BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040815
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 118/289 (40%), Gaps = 64/289 (22%)
Query: 8 NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNV----------------- 50
N G IP L NC+ L ++ L N +++ P W+G L L +
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 51 -------LILRSNIFYGVI------EEPRTGCGF-SKLRIIDLSNNRF------SGNLPS 90
L L +N+F G I + + F + R + + N+ +GNL
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-- 590
Query: 91 KSFLCWNAMKIVNARRMMTYN--KIPDILAG---------------IILSNNRFVGAIPA 133
L + ++ R+ T N I + G + +S N G IP
Sbjct: 591 ---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 134 SIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193
I ++ IP +G+L L LDLS+ K GRIPQ + LT L +
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 194 VSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNED 242
+S+N L+GPIP+ QF TF F N GLCG PL + C+ P+N D
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 751
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 83/205 (40%), Gaps = 45/205 (21%)
Query: 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV 61
E +N F G+IP +L NCS+L L L +S T PS LG+L KL L L N+ G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG- 453
Query: 62 IEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII 121
E P+ L + L N +G +PS C N L I
Sbjct: 454 -EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-------------------LNWIS 493
Query: 122 LSNNRFVGAIPASIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
LSNNR G IP I G L NL L LSN F+G IP
Sbjct: 494 LSNNRLTGEIPKWI------------------------GRLENLAILKLSNNSFSGNIPA 529
Query: 182 QLVELTFLEFFNVSDNYLTGPIPQG 206
+L + L + +++ N G IP
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 97/233 (41%), Gaps = 34/233 (14%)
Query: 6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWL-GTLPKLNVLILRSNIFYGVI-- 62
S N F G IP + L++L L + + P +L G L L L N FYG +
Sbjct: 252 SSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 63 --------------------EEPR-TGCGFSKLRIIDLSNNRFSGNLP-SKSFLCWNAMK 100
E P T L+++DLS N FSG LP S + L + +
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 101 IVNARRMMTYNKIPDI-------LAGIILSNNRFVGAIPASIANLKGXXXXXXXXXXXXX 153
+ + + +P++ L + L NN F G IP +++N
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 154 XIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
IPSSLG+L+ L L L G IPQ+L+ + LE + N LTG IP G
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 21 CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80
C LEFL + + S P +LG L L + N G + C ++L+++++S
Sbjct: 196 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNIS 252
Query: 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG-------IILSNNRFVGAIPA 133
+N+F G +P L +++ ++ +IPD L+G + LS N F GA+P
Sbjct: 253 SNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 134 SIANLKGXXXXXXXXXXXXXXIP-SSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEF 191
+ +P +L + L+ LDLS +F+G +P+ L L+ L
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 192 FNVSDNYLTGPI 203
++S N +GPI
Sbjct: 370 LDLSSNNFSGPI 381
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG 60
M S+N+ G IP+ + + L L LG+ IS + P +G L LN+L L SN G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 61 VIEEPRTGCGFSKLRIIDLSNNRFSGNLP 89
I P+ + L IDLSNN SG +P
Sbjct: 692 RI--PQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 159 LGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP----QGKQFATFDN 214
LG+ + L+ LD+S K +G + + T L+ N+S N GPIP + Q+ +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 215 TSFDGN-----SGLC 224
F G SG C
Sbjct: 276 NKFTGEIPDFLSGAC 290
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 118/289 (40%), Gaps = 64/289 (22%)
Query: 8 NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNV----------------- 50
N G IP L NC+ L ++ L N +++ P W+G L L +
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 51 -------LILRSNIFYGVI------EEPRTGCGF-SKLRIIDLSNNRF------SGNLPS 90
L L +N+F G I + + F + R + + N+ +GNL
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-- 593
Query: 91 KSFLCWNAMKIVNARRMMTYN--KIPDILAG---------------IILSNNRFVGAIPA 133
L + ++ R+ T N I + G + +S N G IP
Sbjct: 594 ---LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 134 SIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193
I ++ IP +G+L L LDLS+ K GRIPQ + LT L +
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 194 VSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGETPTNED 242
+S+N L+GPIP+ QF TF F N GLCG PL + C+ P+N D
Sbjct: 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 83/205 (40%), Gaps = 45/205 (21%)
Query: 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV 61
E +N F G+IP +L NCS+L L L +S T PS LG+L KL L L N+ G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG- 456
Query: 62 IEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGII 121
E P+ L + L N +G +PS C N L I
Sbjct: 457 -EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-------------------LNWIS 496
Query: 122 LSNNRFVGAIPASIANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQ 181
LSNNR G IP I G L NL L LSN F+G IP
Sbjct: 497 LSNNRLTGEIPKWI------------------------GRLENLAILKLSNNSFSGNIPA 532
Query: 182 QLVELTFLEFFNVSDNYLTGPIPQG 206
+L + L + +++ N G IP
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 97/233 (41%), Gaps = 34/233 (14%)
Query: 6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWL-GTLPKLNVLILRSNIFYGVI-- 62
S N F G IP + L++L L + + P +L G L L L N FYG +
Sbjct: 255 SSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 63 --------------------EEPR-TGCGFSKLRIIDLSNNRFSGNLP-SKSFLCWNAMK 100
E P T L+++DLS N FSG LP S + L + +
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 101 IVNARRMMTYNKIPDI-------LAGIILSNNRFVGAIPASIANLKGXXXXXXXXXXXXX 153
+ + + +P++ L + L NN F G IP +++N
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 154 XIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206
IPSSLG+L+ L L L G IPQ+L+ + LE + N LTG IP G
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 21 CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80
C LEFL + + S P +LG L L + N G + C ++L+++++S
Sbjct: 199 CVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC--TELKLLNIS 255
Query: 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG-------IILSNNRFVGAIPA 133
+N+F G +P L +++ ++ +IPD L+G + LS N F GA+P
Sbjct: 256 SNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 134 SIANLKGXXXXXXXXXXXXXXIP-SSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEF 191
+ +P +L + L+ LDLS +F+G +P+ L L+ L
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 192 FNVSDNYLTGPI 203
++S N +GPI
Sbjct: 373 LDLSSNNFSGPI 384
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG 60
M S+N+ G IP+ + + L L LG+ IS + P +G L LN+L L SN G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 61 VIEEPRTGCGFSKLRIIDLSNNRFSGNLP 89
I P+ + L IDLSNN SG +P
Sbjct: 695 RI--PQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 159 LGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP----QGKQFATFDN 214
LG+ + L+ LD+S K +G + + T L+ N+S N GPIP + Q+ +
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 215 TSFDGN-----SGLC 224
F G SG C
Sbjct: 279 NKFTGEIPDFLSGAC 293
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 90/239 (37%), Gaps = 42/239 (17%)
Query: 12 GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGF 71
G IP ++ ++L +L + + +S P +L + L L N G + P +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL--PPSISSL 148
Query: 72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI 131
L I NR SG +P +Y + + +S NR G I
Sbjct: 149 PNLVGITFDGNRISGAIPD------------------SYGSFSKLFTSMTISRNRLTGKI 190
Query: 132 PASIANLK-------------------GXXXXXXXXXXXXXXIPSSLGNL---TNLESLD 169
P + ANL G + LG + NL LD
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLD 250
Query: 170 LSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 228
L N + G +PQ L +L FL NVS N L G IPQG FD +++ N LCG PL
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 28/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 156
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
+ S+N+ + P + + I + NK+ DI L +I +NN+
Sbjct: 157 NFSSNQVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 188 FLEF 191
L+
Sbjct: 265 ELKL 268
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 28/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 156
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
S+N+ + P + + I + NK+ DI L +I +NN+
Sbjct: 157 SFSSNQVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 188 FLEF 191
L+
Sbjct: 265 ELKL 268
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 74/184 (40%), Gaps = 28/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 156
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
S+N+ + P + + I + NK+ DI L +I +NN+
Sbjct: 157 SFSSNQVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 209
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 210 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 188 FLEF 191
L+
Sbjct: 265 ELKL 268
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214
+P+ + NL+NL LDLS+ + +P +L L++F DN +T +P +F N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPW--EFGNLCN 317
Query: 215 TSFDGNSGLCGKPLSK 230
F G+ G PL K
Sbjct: 318 LQF---LGVEGNPLEK 330
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 22/188 (11%)
Query: 33 QISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKS 92
Q S T WLGT ++ + S + G+ E + ++L +RFS ++ S +
Sbjct: 220 QNSTTQSLWLGTFEDIDDEDISSAMLKGLCE--------MSVESLNLQEHRFS-DISSTT 270
Query: 93 FLCWNAMK-----IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGXXXXXXX 147
F C+ ++ + + + + K ++L ++LS N F S AN
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR 330
Query: 148 XXXXXXXI-PSSLGNLTNLESLDLSNKKFAGR--IPQQLVELTFLEFFNVSDNYLTGPIP 204
+ L L NL++LDLS+ QL L+ L+ N+S N P
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE-----P 385
Query: 205 QGKQFATF 212
G Q F
Sbjct: 386 LGLQSQAF 393
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 150 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNL 203
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 204 YLSKNHIS 211
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 128 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNL 181
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 182 YLSKNHIS 189
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV----PLAGLTKLQNL 183
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 184 YLSKNHIS 191
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNL 183
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 184 YLSKNHIS 191
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 22/181 (12%)
Query: 26 FLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS 85
F GL N I WLGT ++ + +F G+ E K +
Sbjct: 219 FKGLKNSTIQSL---WLGTFEDMDDEDISPAVFEGLCEMSVESINLQK---------HYF 266
Query: 86 GNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG------IILSNNRFVGAIPASIANLK 139
N+ S +F C++ ++ ++ +++P L G ++LS N+F S +N
Sbjct: 267 FNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325
Query: 140 GXXXXXXXXXXXXXXIPS-SLGNLTNLESLDLSNKKF--AGRIPQQLVELTFLEFFNVSD 196
+ + L NL NL LDLS+ + QL L+ L+ N+S
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385
Query: 197 N 197
N
Sbjct: 386 N 386
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 148 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNL 201
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 202 YLSKNHIS 209
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNL 180
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 181 YLSKNHIS 188
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 148 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNL 201
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 202 YLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ G +KL+ +
Sbjct: 148 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL----AGLTKLQNL 201
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 202 YLSKNHIS 209
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ P G +KL+ +
Sbjct: 125 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PL--AGLTKLQNL 178
Query: 78 DLSNNRFSG 86
LS N S
Sbjct: 179 YLSKNHISD 187
>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp
pdb|3EW9|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Potassium Ions
pdb|3EWA|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex
With Amppnp And Ammonium Ions
Length = 322
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 57 IFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI 116
+F IE+ G KL IID + F + L K+ R M T NK+ D+
Sbjct: 190 LFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKL--GRHMATLNKLADL 247
Query: 117 LAGIILSNNRFVGAIP 132
I+L N+ V A P
Sbjct: 248 YNCIVLVTNQ-VAAKP 262
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 14 IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73
+P+ L N L + L N +IS + +L LIL N + PRT G
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI--PPRTFDGLKS 103
Query: 74 LRIIDLSNNRFS 85
LR++ L N S
Sbjct: 104 LRLLSLHGNDIS 115
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L++ +LE L LGN +I+D + L L KL+ L L N ++ R +KL+ +
Sbjct: 128 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVPLAR----LTKLQNL 181
Query: 78 DLSNNRFS 85
LS N S
Sbjct: 182 YLSKNHIS 189
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 29/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 156
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
+ N + + P + + I + NK+ DI L +I +NN+
Sbjct: 157 NFGN-QVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 208
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 263
Query: 188 FLEF 191
L+
Sbjct: 264 ELKL 267
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 73/184 (39%), Gaps = 29/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 156
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
+ N + + P + + I + NK+ DI L +I +NN+
Sbjct: 157 NFGN-QVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 208
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 263
Query: 188 FLEF 191
L+
Sbjct: 264 ELKL 267
>pdb|1E1H|A Chain A, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase.
pdb|1E1H|C Chain C, Crystal Structure Of Recombinant Botulinum Neurotoxin Type
A Light Chain, Self-Inhibiting Zn Endopeptidase
Length = 287
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201
TN E DL+ A ++P + T+L N DNYL G
Sbjct: 88 FTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDNEKDNYLKG 127
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 29/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 107 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 160
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
N + + P + + I + NK+ DI L +I +NN+
Sbjct: 161 SFGN-QVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 212
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 213 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 267
Query: 188 FLEF 191
L+
Sbjct: 268 ELKL 271
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 72/184 (39%), Gaps = 29/184 (15%)
Query: 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77
L N + L L L N QI+D P L L LN L L SN I + G + L+ +
Sbjct: 108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN----TISDISALSGLTSLQQL 161
Query: 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDI--------LAGIILSNNRFVG 129
N + + P + + I + NK+ DI L +I +NN+
Sbjct: 162 SFGN-QVTDLKPLANLTTLERLDI-------SSNKVSDISVLAKLTNLESLIATNNQISD 213
Query: 130 AIPASI-ANLKGXXXXXXXXXXXXXXIPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELT 187
P I NL +L +LTNL LDL+N + + P L +LT
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDI-----GTLASLTNLTDLDLANNQISNLAPLSGLTKLT 268
Query: 188 FLEF 191
L+
Sbjct: 269 ELKL 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,239,745
Number of Sequences: 62578
Number of extensions: 322884
Number of successful extensions: 692
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 98
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)