Query 040815
Match_columns 305
No_of_seqs 378 out of 3073
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 12:05:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.8E-30 6E-35 257.6 18.0 223 2-227 360-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-28 2.3E-33 246.3 19.1 225 1-228 335-589 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.7E-26 1E-30 201.9 1.8 234 1-237 176-482 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.8E-24 1.5E-28 188.3 4.7 197 1-200 128-330 (873)
5 KOG4237 Extracellular matrix p 99.9 3.5E-23 7.7E-28 176.0 -1.4 225 2-229 71-365 (498)
6 KOG0444 Cytoskeletal regulator 99.8 2.5E-22 5.4E-27 180.0 -3.0 216 4-227 84-339 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 4.8E-22 1E-26 178.2 -2.7 222 2-229 130-381 (1255)
8 KOG0617 Ras suppressor protein 99.8 5.5E-21 1.2E-25 145.8 -1.0 156 3-185 38-194 (264)
9 KOG0472 Leucine-rich repeat pr 99.8 1.1E-20 2.3E-25 161.5 -2.9 93 130-223 426-541 (565)
10 KOG0472 Leucine-rich repeat pr 99.8 3.6E-21 7.8E-26 164.3 -5.8 209 2-222 72-309 (565)
11 KOG0618 Serine/threonine phosp 99.8 1.1E-19 2.3E-24 169.3 0.1 213 1-223 244-489 (1081)
12 KOG0617 Ras suppressor protein 99.8 1E-20 2.3E-25 144.3 -5.6 180 18-223 29-212 (264)
13 PLN03150 hypothetical protein; 99.7 7.7E-18 1.7E-22 159.4 12.4 117 117-233 420-538 (623)
14 PRK15387 E3 ubiquitin-protein 99.7 9.4E-17 2E-21 152.7 11.4 60 140-204 403-462 (788)
15 KOG4237 Extracellular matrix p 99.7 1E-18 2.2E-23 149.1 -1.8 199 1-202 94-361 (498)
16 PRK15370 E3 ubiquitin-protein 99.7 1.1E-16 2.3E-21 152.8 11.3 199 2-223 203-428 (754)
17 PRK15387 E3 ubiquitin-protein 99.7 3.5E-16 7.6E-21 148.8 13.0 56 164-224 403-459 (788)
18 PLN03210 Resistant to P. syrin 99.7 4.2E-16 9.1E-21 157.4 14.4 189 2-198 615-836 (1153)
19 PRK15370 E3 ubiquitin-protein 99.6 3.2E-16 6.8E-21 149.7 8.6 197 2-222 182-400 (754)
20 PLN03210 Resistant to P. syrin 99.6 2.8E-15 6.1E-20 151.4 15.9 213 1-222 637-905 (1153)
21 cd00116 LRR_RI Leucine-rich re 99.6 3.8E-16 8.2E-21 137.0 1.7 200 1-200 54-291 (319)
22 KOG0618 Serine/threonine phosp 99.6 4.9E-16 1.1E-20 145.2 1.5 109 69-199 380-488 (1081)
23 cd00116 LRR_RI Leucine-rich re 99.6 8.7E-16 1.9E-20 134.7 2.5 198 1-200 26-263 (319)
24 KOG0532 Leucine-rich repeat (L 99.5 9.7E-16 2.1E-20 136.5 -3.6 171 2-202 79-249 (722)
25 COG4886 Leucine-rich repeat (L 99.4 6.6E-13 1.4E-17 120.1 7.2 192 3-205 98-295 (394)
26 PLN03150 hypothetical protein; 99.4 2.3E-12 5E-17 122.4 9.9 113 73-204 419-532 (623)
27 COG4886 Leucine-rich repeat (L 99.3 1.5E-12 3.3E-17 117.7 7.2 188 26-223 97-290 (394)
28 KOG0532 Leucine-rich repeat (L 99.3 1.6E-14 3.4E-19 128.9 -5.9 191 3-224 55-248 (722)
29 KOG3207 Beta-tubulin folding c 99.2 4.2E-12 9.1E-17 110.3 2.9 182 17-200 141-339 (505)
30 PF14580 LRR_9: Leucine-rich r 99.2 1.3E-11 2.9E-16 97.5 5.3 77 117-194 66-147 (175)
31 PF14580 LRR_9: Leucine-rich r 99.2 1.2E-11 2.7E-16 97.7 4.9 137 5-169 4-146 (175)
32 KOG1259 Nischarin, modulator o 99.2 3.4E-12 7.4E-17 106.2 -0.9 134 43-203 281-415 (490)
33 PF13855 LRR_8: Leucine rich r 99.1 7.2E-11 1.6E-15 77.0 3.2 60 140-199 2-61 (61)
34 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.8E-15 75.2 3.5 61 115-175 1-61 (61)
35 KOG1259 Nischarin, modulator o 99.0 1E-10 2.2E-15 97.5 1.1 104 114-222 306-411 (490)
36 KOG3207 Beta-tubulin folding c 99.0 9.1E-11 2E-15 102.1 0.4 175 1-178 149-341 (505)
37 KOG1909 Ran GTPase-activating 98.9 6.1E-10 1.3E-14 94.5 0.8 198 2-200 34-283 (382)
38 KOG1859 Leucine-rich repeat pr 98.8 1.7E-10 3.8E-15 106.2 -2.7 109 112-226 184-295 (1096)
39 KOG0531 Protein phosphatase 1, 98.8 8.6E-10 1.9E-14 100.3 1.6 93 4-105 78-170 (414)
40 KOG0531 Protein phosphatase 1, 98.8 8.3E-10 1.8E-14 100.4 -1.2 79 20-105 70-148 (414)
41 KOG1909 Ran GTPase-activating 98.8 5.9E-09 1.3E-13 88.6 3.9 184 16-200 24-254 (382)
42 KOG4579 Leucine-rich repeat (L 98.7 7.6E-10 1.6E-14 82.0 -2.5 46 130-176 91-136 (177)
43 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.5E-14 90.3 -4.6 175 2-196 189-372 (419)
44 KOG4579 Leucine-rich repeat (L 98.5 6.6E-09 1.4E-13 77.1 -2.0 112 22-158 27-141 (177)
45 KOG4658 Apoptotic ATPase [Sign 98.4 1.7E-07 3.6E-12 91.8 3.3 85 17-105 566-650 (889)
46 KOG2982 Uncharacterized conser 98.3 4.5E-07 9.8E-12 76.0 3.3 183 20-204 69-266 (418)
47 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.3E-13 93.0 -5.7 60 24-89 166-225 (1096)
48 PRK15386 type III secretion pr 98.2 8.5E-06 1.8E-10 72.5 8.8 135 18-173 48-187 (426)
49 PF12799 LRR_4: Leucine Rich r 98.2 1.8E-06 4E-11 51.8 3.1 36 140-176 2-37 (44)
50 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.6E-11 51.9 2.9 36 164-200 2-37 (44)
51 KOG4658 Apoptotic ATPase [Sign 98.1 3.5E-06 7.6E-11 82.8 5.5 78 117-195 573-650 (889)
52 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.7E-11 72.5 1.9 193 2-200 34-255 (388)
53 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.4E-10 64.0 5.3 125 24-174 21-151 (233)
54 KOG2120 SCF ubiquitin ligase, 97.9 2.5E-07 5.4E-12 77.5 -5.0 90 114-205 259-354 (419)
55 PRK15386 type III secretion pr 97.8 7.3E-05 1.6E-09 66.7 8.3 125 1-150 55-188 (426)
56 KOG1644 U2-associated snRNP A' 97.7 6.3E-05 1.4E-09 59.9 4.9 87 112-200 39-126 (233)
57 KOG2982 Uncharacterized conser 97.7 5.7E-06 1.2E-10 69.5 -1.3 201 21-222 44-261 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.6 0.0001 2.2E-09 61.4 4.6 171 17-202 87-287 (388)
59 PF13306 LRR_5: Leucine rich r 97.6 0.00037 8E-09 52.3 7.4 62 16-81 6-67 (129)
60 KOG3665 ZYG-1-like serine/thre 97.5 0.00011 2.5E-09 70.5 4.1 55 45-103 147-201 (699)
61 PF13306 LRR_5: Leucine rich r 97.4 0.00064 1.4E-08 51.0 7.4 123 40-189 6-128 (129)
62 KOG3665 ZYG-1-like serine/thre 97.4 5.9E-05 1.3E-09 72.5 1.6 128 72-201 122-264 (699)
63 KOG2739 Leucine-rich acidic nu 97.2 0.00024 5.2E-09 58.8 2.8 70 14-85 35-104 (260)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00047 1E-08 57.1 2.2 76 117-194 67-150 (260)
65 KOG2123 Uncharacterized conser 96.5 8.8E-05 1.9E-09 62.0 -5.1 96 3-103 24-123 (388)
66 PF00560 LRR_1: Leucine Rich R 96.3 0.0018 3.9E-08 32.3 0.8 18 24-42 2-19 (22)
67 PF00560 LRR_1: Leucine Rich R 96.2 0.002 4.4E-08 32.1 0.9 11 142-152 3-13 (22)
68 KOG2123 Uncharacterized conser 96.0 0.0011 2.3E-08 55.7 -1.3 59 21-85 18-76 (388)
69 KOG4308 LRR-containing protein 95.7 7.1E-05 1.5E-09 68.8 -10.2 83 3-85 92-185 (478)
70 smart00369 LRR_TYP Leucine-ric 95.7 0.011 2.4E-07 30.7 2.3 23 71-94 1-23 (26)
71 smart00370 LRR Leucine-rich re 95.7 0.011 2.4E-07 30.7 2.3 23 71-94 1-23 (26)
72 PF13504 LRR_7: Leucine rich r 95.1 0.013 2.8E-07 27.1 1.2 13 73-85 2-14 (17)
73 KOG0473 Leucine-rich repeat pr 94.1 0.001 2.3E-08 54.3 -6.4 82 116-200 43-124 (326)
74 KOG0473 Leucine-rich repeat pr 93.2 0.0072 1.6E-07 49.6 -3.1 86 69-176 39-124 (326)
75 smart00370 LRR Leucine-rich re 92.3 0.14 2.9E-06 26.4 2.1 14 22-35 2-15 (26)
76 smart00369 LRR_TYP Leucine-ric 92.3 0.14 2.9E-06 26.4 2.1 14 22-35 2-15 (26)
77 KOG4308 LRR-containing protein 91.5 0.002 4.4E-08 59.4 -9.2 162 2-177 119-304 (478)
78 PF13516 LRR_6: Leucine Rich r 91.4 0.039 8.5E-07 27.9 -0.6 13 164-176 3-15 (24)
79 KOG3864 Uncharacterized conser 89.3 0.083 1.8E-06 42.5 -0.7 81 116-196 102-185 (221)
80 PF08374 Protocadherin: Protoc 88.2 0.67 1.5E-05 37.4 3.7 26 257-282 35-60 (221)
81 KOG1947 Leucine rich repeat pr 86.9 0.11 2.4E-06 47.9 -1.6 16 135-150 358-373 (482)
82 smart00365 LRR_SD22 Leucine-ri 85.1 0.77 1.7E-05 23.8 1.7 14 46-59 2-15 (26)
83 PF02439 Adeno_E3_CR2: Adenovi 84.7 0.47 1E-05 26.8 0.9 13 264-276 7-19 (38)
84 smart00364 LRR_BAC Leucine-ric 83.7 0.76 1.6E-05 23.8 1.3 18 72-90 2-19 (26)
85 PF01102 Glycophorin_A: Glycop 82.3 0.92 2E-05 33.5 1.8 10 264-273 68-77 (122)
86 PF02439 Adeno_E3_CR2: Adenovi 82.3 1.6 3.4E-05 24.8 2.3 28 267-294 6-33 (38)
87 KOG3864 Uncharacterized conser 80.7 0.59 1.3E-05 37.7 0.3 84 22-106 101-185 (221)
88 smart00368 LRR_RI Leucine rich 79.5 1.7 3.7E-05 22.8 1.8 14 163-176 2-15 (28)
89 KOG1947 Leucine rich repeat pr 78.3 2.1 4.6E-05 39.5 3.3 85 114-198 213-306 (482)
90 TIGR00864 PCC polycystin catio 76.8 1.2 2.6E-05 49.0 1.3 37 169-205 1-37 (2740)
91 PF08693 SKG6: Transmembrane a 76.6 3 6.5E-05 24.1 2.3 8 260-267 12-19 (40)
92 PF04478 Mid2: Mid2 like cell 75.4 3.8 8.1E-05 31.4 3.3 19 260-278 49-67 (154)
93 PF08114 PMP1_2: ATPase proteo 73.4 5.8 0.00013 22.8 2.9 9 282-290 29-37 (43)
94 PTZ00382 Variant-specific surf 72.3 2.3 4.9E-05 30.1 1.4 16 262-277 64-79 (96)
95 PF10873 DUF2668: Protein of u 71.4 3.1 6.6E-05 31.4 1.9 30 267-296 64-93 (155)
96 TIGR00864 PCC polycystin catio 68.2 3.8 8.3E-05 45.5 2.6 32 145-176 1-32 (2740)
97 KOG4341 F-box protein containi 67.9 2.1 4.6E-05 38.5 0.6 137 44-197 292-436 (483)
98 KOG4242 Predicted myosin-I-bin 67.7 14 0.00031 34.0 5.6 63 23-85 215-281 (553)
99 KOG3763 mRNA export factor TAP 65.8 3.6 7.8E-05 38.4 1.6 38 45-82 217-254 (585)
100 PF04478 Mid2: Mid2 like cell 64.4 1.8 3.8E-05 33.1 -0.5 24 257-280 50-73 (154)
101 PF13908 Shisa: Wnt and FGF in 60.9 5.9 0.00013 31.5 1.9 6 192-197 9-14 (179)
102 PF01102 Glycophorin_A: Glycop 59.1 3.8 8.2E-05 30.3 0.4 33 263-295 63-95 (122)
103 COG3216 Uncharacterized protei 58.6 8.1 0.00018 30.3 2.2 43 259-301 136-179 (184)
104 PF03302 VSP: Giardia variant- 54.3 6.4 0.00014 35.7 1.2 12 263-274 366-377 (397)
105 PF01034 Syndecan: Syndecan do 53.6 4.3 9.3E-05 26.0 -0.0 9 264-272 13-21 (64)
106 PF15176 LRR19-TM: Leucine-ric 52.5 13 0.00028 26.3 2.2 22 279-300 36-57 (102)
107 PF06697 DUF1191: Protein of u 52.4 46 0.00099 28.5 5.8 10 262-271 216-225 (278)
108 PF08374 Protocadherin: Protoc 50.9 12 0.00026 30.4 2.1 21 260-280 41-61 (221)
109 KOG3763 mRNA export factor TAP 49.4 9.8 0.00021 35.6 1.6 64 20-85 216-283 (585)
110 PF02009 Rifin_STEVOR: Rifin/s 47.6 12 0.00025 32.5 1.7 9 278-286 275-283 (299)
111 PF15050 SCIMP: SCIMP protein 47.2 7.1 0.00015 28.4 0.3 10 285-294 32-41 (133)
112 PF15069 FAM163: FAM163 family 46.8 23 0.0005 26.8 2.9 20 268-287 14-33 (143)
113 PF06305 DUF1049: Protein of u 46.7 9.4 0.0002 24.7 0.8 8 269-276 28-35 (68)
114 PTZ00370 STEVOR; Provisional 44.5 18 0.00038 30.9 2.2 19 278-296 269-287 (296)
115 TIGR01478 STEVOR variant surfa 43.6 18 0.00039 30.8 2.1 18 278-295 273-290 (295)
116 PF05795 Plasmodium_Vir: Plasm 40.9 34 0.00074 30.1 3.7 12 283-294 304-315 (354)
117 PF02064 MAS20: MAS20 protein 40.8 9.1 0.0002 28.3 0.0 15 267-281 3-17 (121)
118 smart00367 LRR_CC Leucine-rich 39.9 23 0.0005 17.8 1.5 11 163-173 2-12 (26)
119 PF15179 Myc_target_1: Myc tar 39.7 11 0.00024 29.8 0.3 19 261-279 21-39 (197)
120 PF14991 MLANA: Protein melan- 37.0 11 0.00024 27.2 -0.1 12 283-294 42-53 (118)
121 PF15179 Myc_target_1: Myc tar 35.9 15 0.00032 29.1 0.5 22 259-280 23-44 (197)
122 PF07204 Orthoreo_P10: Orthore 35.8 29 0.00063 24.1 1.8 20 267-286 49-68 (98)
123 PRK09459 pspG phage shock prot 35.6 31 0.00066 22.9 1.8 16 283-298 56-71 (76)
124 PF05808 Podoplanin: Podoplani 32.9 14 0.00031 28.6 0.0 9 262-270 131-139 (162)
125 PF03302 VSP: Giardia variant- 32.0 28 0.00061 31.6 1.7 19 260-278 369-387 (397)
126 PF01708 Gemini_mov: Geminivir 31.5 1.8E+02 0.0039 20.2 5.2 6 284-289 55-60 (91)
127 PF04971 Lysis_S: Lysis protei 30.8 52 0.0011 21.5 2.3 15 283-297 50-64 (68)
128 PF05568 ASFV_J13L: African sw 30.5 43 0.00093 25.3 2.1 19 269-287 34-52 (189)
129 PF01708 Gemini_mov: Geminivir 30.2 39 0.00085 23.3 1.7 40 257-297 33-72 (91)
130 PF15298 AJAP1_PANP_C: AJAP1/P 30.1 59 0.0013 26.2 2.9 8 259-266 100-107 (205)
131 TIGR00985 3a0801s04tom mitocho 29.4 13 0.00029 28.4 -0.7 17 265-281 11-27 (148)
132 COG1380 Putative effector of m 29.4 66 0.0014 24.1 3.0 32 273-304 96-127 (128)
133 PF10577 UPF0560: Uncharacteri 29.3 36 0.00078 33.5 1.9 8 285-292 294-301 (807)
134 PF05545 FixQ: Cbb3-type cytoc 29.0 53 0.0012 19.7 2.1 13 276-288 18-30 (49)
135 PF01299 Lamp: Lysosome-associ 28.3 21 0.00046 31.1 0.3 12 263-274 273-284 (306)
136 PF11346 DUF3149: Protein of u 27.9 52 0.0011 19.3 1.7 8 283-290 29-36 (42)
137 PF12768 Rax2: Cortical protei 27.5 96 0.0021 26.8 4.1 15 21-35 15-29 (281)
138 PF12877 DUF3827: Domain of un 26.3 87 0.0019 30.2 3.8 16 257-272 267-282 (684)
139 PF12259 DUF3609: Protein of u 25.8 67 0.0015 28.8 2.9 9 280-288 316-324 (361)
140 PF10873 DUF2668: Protein of u 25.6 70 0.0015 24.3 2.5 18 260-277 61-78 (155)
141 PF06667 PspB: Phage shock pro 25.0 83 0.0018 21.1 2.5 13 283-295 18-30 (75)
142 PF03672 UPF0154: Uncharacteri 24.0 86 0.0019 20.3 2.4 13 267-279 5-17 (64)
143 PF15145 DUF4577: Domain of un 24.0 49 0.0011 23.8 1.4 16 257-272 59-74 (128)
144 PF15099 PIRT: Phosphoinositid 23.0 67 0.0015 23.8 2.0 11 284-294 100-110 (129)
145 PRK11677 hypothetical protein; 22.7 28 0.00061 26.3 -0.0 17 266-282 7-23 (134)
146 PF14851 FAM176: FAM176 family 22.0 45 0.00098 25.8 1.0 18 269-286 30-47 (153)
147 PRK09458 pspB phage shock prot 21.8 89 0.0019 20.9 2.2 15 282-296 17-31 (75)
148 TIGR02976 phageshock_pspB phag 21.6 1E+02 0.0022 20.6 2.5 12 283-294 18-29 (75)
149 PF10389 CoatB: Bacteriophage 21.0 1E+02 0.0022 18.4 2.1 20 270-289 25-44 (46)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.8e-30 Score=257.63 Aligned_cols=223 Identities=28% Similarity=0.411 Sum_probs=150.2
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|++++.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++..|..+ ..++.|+.|++++
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~ 437 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISN 437 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcC
Confidence 45666666665556555555555555555555555555555555555555555555554444433 4444455555555
Q ss_pred CcCcccCChhhhhcc-----------------------chhhhhhhcccccc------CcccccccEEEccCCccccccc
Q 040815 82 NRFSGNLPSKSFLCW-----------------------NAMKIVNARRMMTY------NKIPDILAGIILSNNRFVGAIP 132 (305)
Q Consensus 82 n~l~g~~p~~~~~~l-----------------------~~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~l~~~~p 132 (305)
|.+++.+|.. +..+ .+|+.|+++.+... ...++.|+.|++++|.+.+.+|
T Consensus 438 N~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 438 NNLQGRINSR-KWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CcccCccChh-hccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 4444333322 3333 44555554432211 1224567888888888888888
Q ss_pred hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc
Q 040815 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212 (305)
Q Consensus 133 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 212 (305)
..+..+++|+.|+|++|.+++.+|..+..+++|++|+|++|++++.+|..+..++.|+++++++|+++|.+|....+..+
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~ 596 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAI 596 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhccc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888887777778
Q ss_pred CCCccCCCCCCCCCC
Q 040815 213 DNTSFDGNSGLCGKP 227 (305)
Q Consensus 213 ~~~~~~~n~~~c~~~ 227 (305)
....+.||+.+|+.+
T Consensus 597 ~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 597 NASAVAGNIDLCGGD 611 (968)
T ss_pred ChhhhcCCccccCCc
Confidence 788888998888743
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=246.25 Aligned_cols=225 Identities=30% Similarity=0.413 Sum_probs=197.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+..|..+ ..+++|+.|+++
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~--~~~~~L~~L~L~ 412 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL--GACRSLRRVRLQ 412 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH--hCCCCCCEEECc
Confidence 479999999999999999999999999999999999999999999999999999999998887776 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccC-----------------------------cccccccEEEccCCcccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYN-----------------------------KIPDILAGIILSNNRFVGAI 131 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~-----------------------------~~~~~L~~L~ls~n~l~~~~ 131 (305)
+|++++.+|.. |..++.|+.++++.+.... .....|+.|++++|.+++.+
T Consensus 413 ~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 413 DNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred CCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence 99999888865 8889999988876521100 01245788888999998899
Q ss_pred chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCC
Q 040815 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA 210 (305)
Q Consensus 132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~ 210 (305)
|..+.++++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.||+++|+++|.+|.. ..+.
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 571 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875 4456
Q ss_pred ccCCCccCCCCCCCCCCC
Q 040815 211 TFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 211 ~l~~~~~~~n~~~c~~~~ 228 (305)
.+..+++.+|+..+..|.
T Consensus 572 ~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 572 SLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccCEEeccCCcceeeCCC
Confidence 778888899988775553
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.7e-26 Score=201.93 Aligned_cols=234 Identities=21% Similarity=0.240 Sum_probs=150.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCC---------------------
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFY--------------------- 59 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--------------------- 59 (305)
++|+|++|+|+..-...|.++.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence 46777777777666667777777777777777776555556666777777777766654
Q ss_pred ---cccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccc------cccCcccccccEEEccCCccccc
Q 040815 60 ---GVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM------MTYNKIPDILAGIILSNNRFVGA 130 (305)
Q Consensus 60 ---~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~------~~~~~~~~~L~~L~ls~n~l~~~ 130 (305)
......| ..+.++++|+|+.|+++ .+..++.-++++|+.|+++.+ .+.....+.|++|+|++|+++..
T Consensus 256 ~I~kL~DG~F--y~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 256 DISKLDDGAF--YGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred CcccccCcce--eeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 2222223 45667777777777777 677777777888888887762 33445577899999999999866
Q ss_pred cchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCc---------------------------ccc
Q 040815 131 IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP---------------------------QQL 183 (305)
Q Consensus 131 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---------------------------~~~ 183 (305)
.+..|..+..|++|+|++|.++..-..+|..+++|++|||++|.+++.+. .+|
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 67777766666666666666664444455555555555555555554332 244
Q ss_pred ccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCC----------------CCCCCCCC
Q 040815 184 VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLS----------------KGCESGET 237 (305)
Q Consensus 184 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~----------------~~c~~~~~ 237 (305)
..++.|++|||.+|.+...-|..-.-..+..+.+....++|+|++. ..|..|++
T Consensus 413 sgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~ 482 (873)
T KOG4194|consen 413 SGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEP 482 (873)
T ss_pred ccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcc
Confidence 4455555555555555544444322224555556666789999765 56887765
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.8e-24 Score=188.34 Aligned_cols=197 Identities=23% Similarity=0.191 Sum_probs=125.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+.|+|.+|.|+..-.+++..++.|+.||||.|.|+...-..|..-.++++|+|++|.|+.+....| .++.+|.+|.|+
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F--~~lnsL~tlkLs 205 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHF--DSLNSLLTLKLS 205 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccc--cccchheeeecc
Confidence 357788888886667777788888888888888875544566666778888888888887766666 677788888888
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 154 (305)
.|+++ .+|...|..+++|+.|++..++ ..++.+++|+.|.|..|++...-.+.|..+.++++|+|+.|+++..
T Consensus 206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 88888 8888888888888888877521 1223344555555555555544444455555555555555555444
Q ss_pred CCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc
Q 040815 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
-.+++.++++|+.|+||+|.|....++.+...++|++|||++|+++
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 4444445555555555555554444444444455555555555554
No 5
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=3.5e-23 Score=176.03 Aligned_cols=225 Identities=19% Similarity=0.196 Sum_probs=165.1
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccC-ccCCcccCCCCCCCCCCCccEEEcc
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRS-NIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+++|..|.|+...+.+|+.+++|+.|||+.|+|+.+-|++|.++.+|..|.+-+ |+|+.+....| .++..|+.|.+.
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F--~gL~slqrLllN 148 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF--GGLSSLQRLLLN 148 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh--hhHHHHHHHhcC
Confidence 578999999977788999999999999999999999999999999887776555 89987776666 667777777776
Q ss_pred CCcCcccCChhhhhccchhhhhhhccc------cccC-------------------------------------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRM------MTYN------------------------------------------- 111 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~------~~~~------------------------------------------- 111 (305)
-|++. -++..+|..++++..|.+.++ ....
T Consensus 149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 66666 566666666666554443320 0000
Q ss_pred ---------------cccccccEE--Ecc-CCccccccc-hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC
Q 040815 112 ---------------KIPDILAGI--ILS-NNRFVGAIP-ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172 (305)
Q Consensus 112 ---------------~~~~~L~~L--~ls-~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 172 (305)
+....++.+ .++ .+...+..| ..|..+++|++|+|++|++++.-+.+|.+...+++|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 000011111 111 122222333 3477899999999999999999999999999999999999
Q ss_pred CcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCCC
Q 040815 173 KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPLS 229 (305)
Q Consensus 173 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~~ 229 (305)
|++....-..|.++..|+.|+|.+|+++..-|.. .....+..+.+.+||+.|+|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 9998666678889999999999999999766643 23445667778899999999653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.5e-22 Score=179.98 Aligned_cols=216 Identities=25% Similarity=0.320 Sum_probs=137.7
Q ss_pred EccCCccc-cccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 4 KRSHNLFE-GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 4 ~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
++.+|++. ..+|..+..+..|+.||||.|++. +.|..+..-+++-+|+||+|+|..++...+ .++..|-+||||+|
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lf--inLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLF--INLTDLLFLDLSNN 160 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHH--HhhHhHhhhccccc
Confidence 44455544 235555666666666666666664 456666666666666666666654433333 45566666666666
Q ss_pred cCcccCChhhhhccchhhhhhhcc------------------------cc-ccC------cccccccEEEccCCcccccc
Q 040815 83 RFSGNLPSKSFLCWNAMKIVNARR------------------------MM-TYN------KIPDILAGIILSNNRFVGAI 131 (305)
Q Consensus 83 ~l~g~~p~~~~~~l~~L~~l~l~~------------------------~~-~~~------~~~~~L~~L~ls~n~l~~~~ 131 (305)
++. .+|+. ...+..|+.|.+++ .. ... ..+.+|..+|+|.|++. .+
T Consensus 161 rLe-~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred hhh-hcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 665 55554 44444555554443 11 111 12446777888888888 88
Q ss_pred chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc--CCCCCCCCC
Q 040815 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT--GPIPQGKQF 209 (305)
Q Consensus 132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~~~~ 209 (305)
|+.+..+++|+.|+||+|+|+ .+....+.-.+|++|+||.|+++ .+|+.+..+++|+.|.+.+|+++ |.....+.+
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 888888888888888888888 44555566678888888888888 78888888888888888888764 433223455
Q ss_pred CccCCCccCCCC------CCCCCC
Q 040815 210 ATFDNTSFDGNS------GLCGKP 227 (305)
Q Consensus 210 ~~l~~~~~~~n~------~~c~~~ 227 (305)
..+..+....|. .+|.|+
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~ 339 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCV 339 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhH
Confidence 555555555553 466665
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=4.8e-22 Score=178.18 Aligned_cols=222 Identities=24% Similarity=0.317 Sum_probs=162.5
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCc----ccCC-------------
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG----VIEE------------- 64 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~------------- 64 (305)
+|+||+|+|..+...-|.+++.|-.||||+|++. .+|..+..+.+|++|+|++|.+.. ..|.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 4566666666333334556666666677777663 566666667777777777775421 0111
Q ss_pred ------CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhcccccc-----CcccccccEEEccCCccccccch
Q 040815 65 ------PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY-----NKIPDILAGIILSNNRFVGAIPA 133 (305)
Q Consensus 65 ------~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~-----~~~~~~L~~L~ls~n~l~~~~p~ 133 (305)
+.++-.+.+|..+|+|.|++. .+|+. ...+.+|+.|+++++... .....+|++|++|.|+++ .+|+
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCCC-cchHH-HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH
Confidence 112245667778888888877 67754 667788888887764321 123567888999999998 8999
Q ss_pred hhhCCCCCCEEecCCcccc-ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCc
Q 040815 134 SIANLKGLQVLNLQYNNLQ-GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFAT 211 (305)
Q Consensus 134 ~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~ 211 (305)
.++.++.|+.|.+.+|+++ .-+|..++++.+|+++..++|.+. .+|+.+..+.+|+.|.|++|.+- .+|+. ..++.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 9999999999999999876 347888999999999999999997 89999999999999999999998 56665 45677
Q ss_pred cCCCccCCCCCCCCCCCC
Q 040815 212 FDNTSFDGNSGLCGKPLS 229 (305)
Q Consensus 212 l~~~~~~~n~~~c~~~~~ 229 (305)
+..+++..||.+.-+|.+
T Consensus 364 l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred cceeeccCCcCccCCCCc
Confidence 888899999988876654
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=5.5e-21 Score=145.79 Aligned_cols=156 Identities=29% Similarity=0.563 Sum_probs=88.4
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
|.||+|+++ .+|+.+.++.+|+.|++++|+|. .+|..++.+++|+.|+++-|++. ..|..| +.++.|+.|||.+|
T Consensus 38 LtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf--gs~p~levldltyn 112 (264)
T KOG0617|consen 38 LTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF--GSFPALEVLDLTYN 112 (264)
T ss_pred hhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc--CCCchhhhhhcccc
Confidence 456666666 55556666666666666666663 45656666666666666666654 333334 56666666666666
Q ss_pred cCcc-cCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815 83 RFSG-NLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN 161 (305)
Q Consensus 83 ~l~g-~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 161 (305)
++.. .+|.. |..++. |+.|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.
T Consensus 113 nl~e~~lpgn-ff~m~t------------------lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 113 NLNENSLPGN-FFYMTT------------------LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred ccccccCCcc-hhHHHH------------------HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 6552 34433 222222 333336666665 55666666666666666666655 45555666
Q ss_pred CCCCCEEeCCCCcCCccCcccccc
Q 040815 162 LTNLESLDLSNKKFAGRIPQQLVE 185 (305)
Q Consensus 162 l~~L~~L~L~~N~l~~~~p~~~~~ 185 (305)
+..|++|++.+|+++ .+|..++.
T Consensus 172 lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred HHHHHHHhcccceee-ecChhhhh
Confidence 666666666666665 44444443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=1.1e-20 Score=161.46 Aligned_cols=93 Identities=26% Similarity=0.400 Sum_probs=68.0
Q ss_pred ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC-----------------------ccCccccccC
Q 040815 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA-----------------------GRIPQQLVEL 186 (305)
Q Consensus 130 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------------------~~~p~~~~~l 186 (305)
-+|..+..+++|..|+|++|.+. .+|..++.+..|+.||++.|++. ...|+.+.++
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 45555666777777777777776 56777777777777777777664 2223346678
Q ss_pred CCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815 187 TFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223 (305)
Q Consensus 187 ~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 223 (305)
.+|..||+.+|.+....|..+...++..+.+.|||+.
T Consensus 505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 8899999999999955555577788888889999874
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=3.6e-21 Score=164.32 Aligned_cols=209 Identities=20% Similarity=0.280 Sum_probs=132.6
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|++.+|++. ..|.+++.+..+..++.+.|++. .+|..++.+.+|..|+.++|.+....+ .+ +.+..|+.++..+
T Consensus 72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~-~i--~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD-SI--GRLLDLEDLDATN 146 (565)
T ss_pred EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc-hH--HHHhhhhhhhccc
Confidence 4666677766 56666666666666777776664 466666666666666666666654422 22 4555566666666
Q ss_pred CcCcccCChhhhhccchhhhhhhcccccc----------------------------CcccccccEEEccCCccccccch
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTY----------------------------NKIPDILAGIILSNNRFVGAIPA 133 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~----------------------------~~~~~~L~~L~ls~n~l~~~~p~ 133 (305)
|+++ ++|++ +..+.++..+++.++... ...+..|.-||+..|++. .+|
T Consensus 147 N~i~-slp~~-~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP- 222 (565)
T KOG0472|consen 147 NQIS-SLPED-MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP- 222 (565)
T ss_pred cccc-cCchH-HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-
Confidence 6665 55544 444445544444331110 011233444445555554 444
Q ss_pred hhhCCCCCCEEecCCccccccCCcc-ccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc
Q 040815 134 SIANLKGLQVLNLQYNNLQGLIPSS-LGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212 (305)
Q Consensus 134 ~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 212 (305)
.|.++..|++++++.|++. .+|.. ..+++++.+|||..|++. +.|+.+.-+.+|.+||+|+|.+++..++.+.+ .+
T Consensus 223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HL 299 (565)
T ss_pred CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-ee
Confidence 4555555555555555555 33433 347889999999999998 89999999999999999999999777766665 77
Q ss_pred CCCccCCCCC
Q 040815 213 DNTSFDGNSG 222 (305)
Q Consensus 213 ~~~~~~~n~~ 222 (305)
..+.+.|||.
T Consensus 300 ~~L~leGNPl 309 (565)
T KOG0472|consen 300 KFLALEGNPL 309 (565)
T ss_pred eehhhcCCch
Confidence 7788899985
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=1.1e-19 Score=169.30 Aligned_cols=213 Identities=24% Similarity=0.360 Sum_probs=151.0
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+++|+++|+++ .+|+.+..+.+|+.++...|+++ .+|..+...++|+.|....|.+..+.+.. .+++.|++|||.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~l---e~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFL---EGLKSLRTLDLQ 318 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcc---cccceeeeeeeh
Confidence 36788888888 57788888999999999999884 67888888888888888888887665433 568999999999
Q ss_pred CCcCcccCChhhhhccch-hhhhhhcc------------------------------ccccCcccccccEEEccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNA-MKIVNARR------------------------------MMTYNKIPDILAGIILSNNRFVG 129 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~-L~~l~l~~------------------------------~~~~~~~~~~L~~L~ls~n~l~~ 129 (305)
.|++. .+|+..+..... +..++.+. +.........|+.|+|++|+++
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 99998 888876655543 55554332 1111122345666666666665
Q ss_pred ccc-hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC-CCCCCC
Q 040815 130 AIP-ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG-PIPQGK 207 (305)
Q Consensus 130 ~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~ 207 (305)
.+| ..+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333 33455666666666666666 45566666666666666666665 555 67788999999999999974 455555
Q ss_pred CCCccCCCccCCCCCC
Q 040815 208 QFATFDNTSFDGNSGL 223 (305)
Q Consensus 208 ~~~~l~~~~~~~n~~~ 223 (305)
..+++..+++.||++.
T Consensus 474 p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred CCcccceeeccCCccc
Confidence 5578999999999863
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1e-20 Score=144.28 Aligned_cols=180 Identities=26% Similarity=0.431 Sum_probs=147.2
Q ss_pred ccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccc
Q 040815 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWN 97 (305)
Q Consensus 18 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~ 97 (305)
+-++.+++.|.||+|+++ .+|..+..+.+|+.|++.+|+++.. |..+ +++++|+.|+++-|++. .+|.+ |+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~i--ssl~klr~lnvgmnrl~-~lprg-fgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSI--SSLPKLRILNVGMNRLN-ILPRG-FGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-Chhh--hhchhhhheecchhhhh-cCccc-cCCCc
Confidence 446788999999999997 5777889999999999999999865 3333 78999999999999998 88876 88777
Q ss_pred hhhhhhhccccccCcccccccEEEccCCcccc-ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815 98 AMKIVNARRMMTYNKIPDILAGIILSNNRFVG-AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 98 ~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
.|+.|+ +++|++.. .+|..|..++.|+.|+|+.|.+. .+|..++++++|+.|.+..|.+-
T Consensus 103 ~levld------------------ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 103 ALEVLD------------------LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hhhhhh------------------ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 666655 77777763 46888888999999999999999 77888999999999999999998
Q ss_pred ccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc---CCCccCCCCCC
Q 040815 177 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF---DNTSFDGNSGL 223 (305)
Q Consensus 177 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l---~~~~~~~n~~~ 223 (305)
.+|..++.+..|++|.+++|.++-..|+.+.+... .....+.|||.
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 89999999999999999999999555554433222 22334566653
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.75 E-value=7.7e-18 Score=159.43 Aligned_cols=117 Identities=40% Similarity=0.680 Sum_probs=105.1
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196 (305)
Q Consensus 117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 196 (305)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCC--CCccCCCccCCCCCCCCCCCCCCCC
Q 040815 197 NYLTGPIPQGKQ--FATFDNTSFDGNSGLCGKPLSKGCE 233 (305)
Q Consensus 197 N~l~~~~p~~~~--~~~l~~~~~~~n~~~c~~~~~~~c~ 233 (305)
|.++|.+|.... ...+..+.+.+|+.+|+.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999997521 2344567789999999877555553
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=9.4e-17 Score=152.65 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 204 (305)
+|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|..+..++.|+.|++++|+|++..|
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 34444444444442 3322 123444555555554 445555555555555555555554433
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=1e-18 Score=149.11 Aligned_cols=199 Identities=21% Similarity=0.206 Sum_probs=169.1
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
|.||||+|.|+.+-|++|.++.++..|-+-+ |+|+....+.|+++..|+.|.+.-|.+.-...+.+ ..+++|..|.+
T Consensus 94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al--~dL~~l~lLsl 171 (498)
T KOG4237|consen 94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDAL--RDLPSLSLLSL 171 (498)
T ss_pred ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHH--HHhhhcchhcc
Confidence 5799999999999999999999988876555 99988777789999999999999888877666666 77888888888
Q ss_pred cCCcCcccCChhhhhccchhhhhhhcc-----------------------------------------------------
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNARR----------------------------------------------------- 106 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~----------------------------------------------------- 106 (305)
.+|.+. .++...|..+.+++.+++-.
T Consensus 172 yDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 172 YDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred cchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 888887 77777777777776665321
Q ss_pred ---------------ccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCC
Q 040815 107 ---------------MMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLS 171 (305)
Q Consensus 107 ---------------~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 171 (305)
+...++.+++|+.|+|++|.++++-+.+|..+.++++|.|..|++...-...|.++..|+.|+|.
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 11123447889999999999999999999999999999999999986666789999999999999
Q ss_pred CCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 172 NKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 172 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
+|+|+..-|..|..+.+|.+|++-.|++.+.
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCcccCc
Confidence 9999999999999999999999999998654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=1.1e-16 Score=152.85 Aligned_cols=199 Identities=21% Similarity=0.309 Sum_probs=115.4
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccC-------------------CCCCCEEEccCccCCccc
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGT-------------------LPKLNVLILRSNIFYGVI 62 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-------------------l~~L~~L~L~~n~l~~~~ 62 (305)
.|+|++|+|+ .+|..+. ++|++|++++|+++ .+|..+.. ..+|+.|++++|+++.+
T Consensus 203 ~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~L- 277 (754)
T PRK15370 203 TLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCL- 277 (754)
T ss_pred EEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCcc-
Confidence 5667777776 4454432 35566666655554 23332210 13566666666666532
Q ss_pred CCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccc--c-CcccccccEEEccCCccccccchhhhCCC
Q 040815 63 EEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT--Y-NKIPDILAGIILSNNRFVGAIPASIANLK 139 (305)
Q Consensus 63 ~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--~-~~~~~~L~~L~ls~n~l~~~~p~~~~~l~ 139 (305)
|..+ .++|+.|++++|+++ .+|.... .+|+.|++..+.. + ...+++|+.|++++|.++ .+|..+. +
T Consensus 278 P~~l----~~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~ 346 (754)
T PRK15370 278 PENL----PEELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--P 346 (754)
T ss_pred cccc----CCCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--C
Confidence 3222 246777777777776 5664321 3566666554221 1 123456778888888877 4665553 5
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-----CCCCccCC
Q 040815 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-----KQFATFDN 214 (305)
Q Consensus 140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-----~~~~~l~~ 214 (305)
+|+.|++++|+++ .+|..+. ++|++|++++|.++ .+|..+. ..|+.|++++|+++ .+|.. ...+.+..
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 7888888888877 4565543 57888888888887 5565543 35777888888887 44432 11233445
Q ss_pred CccCCCCCC
Q 040815 215 TSFDGNSGL 223 (305)
Q Consensus 215 ~~~~~n~~~ 223 (305)
+.+.+||..
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 566677653
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=3.5e-16 Score=148.78 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=29.4
Q ss_pred CCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCC
Q 040815 164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c 224 (305)
+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|.. ..+..+..+.+.+|+...
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 4455555555554 23432 124555666666665 44432 334556666777887643
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=4.2e-16 Score=157.39 Aligned_cols=189 Identities=19% Similarity=0.164 Sum_probs=95.7
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|++. .++..+..+++|+.|+|+++.....+|. +..+++|++|+|++|.....+|..+ ..+++|+.|++++
T Consensus 615 ~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si--~~L~~L~~L~L~~ 690 (1153)
T PLN03210 615 KLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI--QYLNKLEDLDMSR 690 (1153)
T ss_pred EEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh--hccCCCCEEeCCC
Confidence 4555555555 4455555556666666655443334442 4555566666666554433344333 5556666666665
Q ss_pred CcCcccCChhhhhccchhhhhhhcccccc---CcccccccEEEccCCccccccchhhh----------------------
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTY---NKIPDILAGIILSNNRFVGAIPASIA---------------------- 136 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~---------------------- 136 (305)
|.....+|... ++++|+.|+++++... ...+.+|++|++++|.+. .+|..+.
T Consensus 691 c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 691 CENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccccc
Confidence 44333555432 4555555555543222 222345666677666655 4443320
Q ss_pred --------CCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCc
Q 040815 137 --------NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY 198 (305)
Q Consensus 137 --------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 198 (305)
..++|+.|+|++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 11244555555554444555555555555555555543333444433 45555555555543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=3.2e-16 Score=149.67 Aligned_cols=197 Identities=23% Similarity=0.329 Sum_probs=124.2
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|.++.+ |..+ ...|+.|+|++
T Consensus 182 ~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l----~~~L~~L~Ls~ 250 (754)
T PRK15370 182 ELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PATL----PDTIQEMELSI 250 (754)
T ss_pred EEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Chhh----hccccEEECcC
Confidence 6899999999 5777653 68999999999998 4676553 5899999999999865 3322 24788888888
Q ss_pred CcCcccCChhhhhccchhhhhhhccccc--cC-cccccccEEEccCCccccccchhhhC-------------------CC
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMT--YN-KIPDILAGIILSNNRFVGAIPASIAN-------------------LK 139 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~--~~-~~~~~L~~L~ls~n~l~~~~p~~~~~-------------------l~ 139 (305)
|++. .+|.... .+|+.|+++.+.. +. ..++.|+.|++++|.++ .+|..+.. .+
T Consensus 251 N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~ 325 (754)
T PRK15370 251 NRIT-ELPERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPP 325 (754)
T ss_pred CccC-cCChhHh---CCCCEEECcCCccCccccccCCCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccc
Confidence 8888 7886543 3566666654211 11 12456778888888777 34433220 13
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCC
Q 040815 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDG 219 (305)
Q Consensus 140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~ 219 (305)
+|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++. +|.. ....+..+++.+
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~-l~~sL~~LdLs~ 397 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPEN-LPAALQIMQASR 397 (754)
T ss_pred cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHh-HHHHHHHHhhcc
Confidence 45555666665553 444332 56777777777766 455544 2467777777777763 3432 112344444555
Q ss_pred CCC
Q 040815 220 NSG 222 (305)
Q Consensus 220 n~~ 222 (305)
|..
T Consensus 398 N~L 400 (754)
T PRK15370 398 NNL 400 (754)
T ss_pred CCc
Confidence 543
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.65 E-value=2.8e-15 Score=151.44 Aligned_cols=213 Identities=21% Similarity=0.255 Sum_probs=128.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc-
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL- 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L- 79 (305)
++|+|+++...+.+| .+..+++|+.|+|++|.....+|..++.+++|+.|++++|..-..+|... .+++|+.|++
T Consensus 637 k~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Ls 712 (1153)
T PLN03210 637 RNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLS 712 (1153)
T ss_pred CEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCC
Confidence 467887765444566 46777888888888776656777778888888888888764333333322 3444555554
Q ss_pred --------------------cCCcCcccCChhhhhccchhhhhhhcccc-------------ccCcccccccEEEccCCc
Q 040815 80 --------------------SNNRFSGNLPSKSFLCWNAMKIVNARRMM-------------TYNKIPDILAGIILSNNR 126 (305)
Q Consensus 80 --------------------~~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------------~~~~~~~~L~~L~ls~n~ 126 (305)
++|.+. .+|... .+++|..|++.... .....++.|+.|++++|.
T Consensus 713 gc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 713 GCSRLKSFPDISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred CCCCccccccccCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 444444 444321 34455555443310 011124678999999998
Q ss_pred cccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC---------------------CcCCccCcccccc
Q 040815 127 FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN---------------------KKFAGRIPQQLVE 185 (305)
Q Consensus 127 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~---------------------N~l~~~~p~~~~~ 185 (305)
..+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++ |.++ .+|..+..
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~ 867 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEK 867 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhc
Confidence 777899999999999999999875444666544 445555555554 4444 45555666
Q ss_pred CCCCCEEeccC-CcccCCCCCCCCCCccCCCccCCCCC
Q 040815 186 LTFLEFFNVSD-NYLTGPIPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 186 l~~L~~L~l~~-N~l~~~~p~~~~~~~l~~~~~~~n~~ 222 (305)
+++|+.|++++ |++.+..+....+..+..+.+.+++.
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 66666666665 44543322223344454455555443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.58 E-value=3.8e-16 Score=137.00 Aligned_cols=200 Identities=23% Similarity=0.159 Sum_probs=115.5
Q ss_pred CEEEccCCccc------cccchhccCCCCCcEEeCCCcccCCCcChhccCCCC---CCEEEccCccCCcccCCC--CCCC
Q 040815 1 MEAKRSHNLFE------GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPK---LNVLILRSNIFYGVIEEP--RTGC 69 (305)
Q Consensus 1 ~~L~Ls~n~l~------~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~~~~~--~~~~ 69 (305)
++|+++++.+. ..++..+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+....... ..+.
T Consensus 54 ~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~ 133 (319)
T cd00116 54 KELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133 (319)
T ss_pred eEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH
Confidence 35788888776 234567778899999999999997666666665555 999999999886311111 0113
Q ss_pred CC-CCccEEEccCCcCcccCChh---hhhccchhhhhhhcccccc-------C---cccccccEEEccCCccccc----c
Q 040815 70 GF-SKLRIIDLSNNRFSGNLPSK---SFLCWNAMKIVNARRMMTY-------N---KIPDILAGIILSNNRFVGA----I 131 (305)
Q Consensus 70 ~l-~~L~~L~L~~n~l~g~~p~~---~~~~l~~L~~l~l~~~~~~-------~---~~~~~L~~L~ls~n~l~~~----~ 131 (305)
.+ ++|+.|++++|.+++..... .+..+..|+.|++..+.-. . ...+.|+.|++++|.+++. +
T Consensus 134 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 213 (319)
T cd00116 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL 213 (319)
T ss_pred hCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH
Confidence 45 78999999999988432222 2333345555554432110 0 0123566666666665432 2
Q ss_pred chhhhCCCCCCEEecCCccccccCCcccc-----CCCCCCEEeCCCCcCCc----cCccccccCCCCCEEeccCCccc
Q 040815 132 PASIANLKGLQVLNLQYNNLQGLIPSSLG-----NLTNLESLDLSNKKFAG----RIPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
+..+..+++|++|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|.++
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 23344555666666666665532221111 12566666666666652 22333444556666666666665
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=4.9e-16 Score=145.21 Aligned_cols=109 Identities=28% Similarity=0.472 Sum_probs=83.2
Q ss_pred CCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCC
Q 040815 69 CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY 148 (305)
Q Consensus 69 ~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 148 (305)
.+++.|+.|+|++|++. ++|+..+.++..|+.|+ ||+|.++ .+|+.+..+..|++|....
T Consensus 380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~------------------LSGNkL~-~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELN------------------LSGNKLT-TLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred ccccceeeeeecccccc-cCCHHHHhchHHhHHHh------------------cccchhh-hhhHHHHhhhhhHHHhhcC
Confidence 45667777777777776 77776666655555554 8999998 8888899999999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcc
Q 040815 149 NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199 (305)
Q Consensus 149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 199 (305)
|++. ..| .+..++.|+.+|++.|.++...-......++|++||+++|.-
T Consensus 440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 9988 667 588899999999999988854333333347899999999873
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=8.7e-16 Score=134.72 Aligned_cols=198 Identities=20% Similarity=0.119 Sum_probs=110.3
Q ss_pred CEEEccCCccccc----cchhccCCCCCcEEeCCCcccCC------CcChhccCCCCCCEEEccCccCCcccCCCCCCCC
Q 040815 1 MEAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISD------TFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCG 70 (305)
Q Consensus 1 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 70 (305)
++|+++++.++.. ++..+...+++++++++++.+.+ .++..+..+++|+.|++++|.+....+..+ ..
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~ 103 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL--ES 103 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH--HH
Confidence 5789999998643 56677788899999999998862 234567788999999999999875433222 23
Q ss_pred C---CCccEEEccCCcCcccCChh---hhhcc-chhhhhhhcccccc----------CcccccccEEEccCCccccc---
Q 040815 71 F---SKLRIIDLSNNRFSGNLPSK---SFLCW-NAMKIVNARRMMTY----------NKIPDILAGIILSNNRFVGA--- 130 (305)
Q Consensus 71 l---~~L~~L~L~~n~l~g~~p~~---~~~~l-~~L~~l~l~~~~~~----------~~~~~~L~~L~ls~n~l~~~--- 130 (305)
+ ++|+.|++++|++.+.-... .+..+ ++|+.+++.++... ...+..|+.|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 3 45999999999987311111 12233 44455554432111 01123455555555555421
Q ss_pred -cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCccCcccccc-----CCCCCEEeccCCccc
Q 040815 131 -IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQLVE-----LTFLEFFNVSDNYLT 200 (305)
Q Consensus 131 -~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~l~~N~l~ 200 (305)
++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++.....+.. .+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 222233344555555555555422 1222334455555555555554322111111 245555555555553
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.49 E-value=9.7e-16 Score=136.52 Aligned_cols=171 Identities=29% Similarity=0.418 Sum_probs=136.9
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
..||+.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++.. |... +.+ -|+.|-+++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l-p~~l--C~l-pLkvli~sN 152 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL-PDGL--CDL-PLKVLIVSN 152 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC-Chhh--hcC-cceeEEEec
Confidence 3688899988 88888888889999999999884 7888889999999999999998754 3333 444 488899999
Q ss_pred CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN 161 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 161 (305)
|+++ .+|++ ++.. ..|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+..
T Consensus 153 Nkl~-~lp~~-ig~~------------------~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~ 210 (722)
T KOG0532|consen 153 NKLT-SLPEE-IGLL------------------PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS 210 (722)
T ss_pred Cccc-cCCcc-cccc------------------hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence 9998 88876 3333 34555668888887 77888888888999999988888 56666764
Q ss_pred CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
+ .|..||+|.|+++ .+|-.|..|+.|++|-|.+|+++.+
T Consensus 211 L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred C-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 4 4888999999988 8888899999999999999988743
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=6.6e-13 Score=120.07 Aligned_cols=192 Identities=31% Similarity=0.431 Sum_probs=114.8
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCC-CCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLP-KLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
|+++.|.+.. ....+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+.... ... ..+++|+.|++++
T Consensus 98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~--~~l~~L~~L~l~~ 172 (394)
T COG4886 98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESLP-SPL--RNLPNLKNLDLSF 172 (394)
T ss_pred eecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhhh-hhh--hccccccccccCC
Confidence 4455555432 22233444666666666666653 444444443 6666666666665331 122 4566666666666
Q ss_pred CcCcccCChhhhhccchhhhhhhcccc--ccC---cccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMM--TYN---KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~---~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
|+++ .+|.. ....+.|+.|++++.. ... ..+..|+++++++|.+. ..+..+..+..+..+.+++|++. .++
T Consensus 173 N~l~-~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 173 NDLS-DLPKL-LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred chhh-hhhhh-hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 6666 55543 2244444444444311 111 12444777778888544 55666777778888888888876 346
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
..++.+++++.|++++|.++ .++. +..+.+++.|++++|.+....|.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 66777888888888888887 4444 77778888888888888765554
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.37 E-value=2.3e-12 Score=122.36 Aligned_cols=113 Identities=35% Similarity=0.533 Sum_probs=99.7
Q ss_pred CccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815 73 KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 73 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
.++.|+|++|.+.|.+|.. +.. ++.|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~------------------L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISK------------------LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhC------------------CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC
Confidence 4788999999999999975 443 456788889999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCccCccccccC-CCCCEEeccCCcccCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVEL-TFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 204 (305)
|.+|..++++++|+.|+|++|.++|.+|..+... .++..+++.+|...+..|
T Consensus 480 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999999999999999999999999988764 467789999998766544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=1.5e-12 Score=117.70 Aligned_cols=188 Identities=28% Similarity=0.318 Sum_probs=147.7
Q ss_pred EEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCC-CccEEEccCCcCcccCChhhhhccchhhhhhh
Q 040815 26 FLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFS-KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNA 104 (305)
Q Consensus 26 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l 104 (305)
.++++.|.+.. ....+..++.++.|++.+|.++.+.+.. ..+. +|+.|++++|.+. .+|.. ...++.|+.|++
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~i~~~~---~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNITDIPPLI---GLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDL 170 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccccCcccc---ccchhhcccccccccchh-hhhhh-hhcccccccccc
Confidence 58888888743 3344566789999999999998765443 3453 8999999999999 87633 788999999998
Q ss_pred cccc--ccCc---ccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccC
Q 040815 105 RRMM--TYNK---IPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI 179 (305)
Q Consensus 105 ~~~~--~~~~---~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 179 (305)
..+. .... ..+.|+.|++++|.++ .+|..+.....|+++.+++|.+. ..+..+..+.++..+.+.+|++. .+
T Consensus 171 ~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 171 SFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred CCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 7632 1221 5778999999999998 78877767777999999999655 46677889999999999999987 44
Q ss_pred ccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815 180 PQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223 (305)
Q Consensus 180 p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 223 (305)
+..+..++.++.|++++|.++ .++....+..+..+++.+|...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cchhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence 677888999999999999998 5554666777888888887654
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=1.6e-14 Score=128.90 Aligned_cols=191 Identities=26% Similarity=0.391 Sum_probs=155.1
Q ss_pred EEccCCccccccch--hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 3 AKRSHNLFEGRIPR--SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 3 L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
|.|++-++. .+|. +=.++..-...||+.|++. ++|..+..+..|..+.|..|.+..+ |... +.+..|+++||+
T Consensus 55 l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i-p~~i--~~L~~lt~l~ls 129 (722)
T KOG0532|consen 55 LLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI-PEAI--CNLEALTFLDLS 129 (722)
T ss_pred cccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceec-chhh--hhhhHHHHhhhc
Confidence 456666665 3432 2245666777899999995 7898888888999999999998744 4444 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
.|+++ .+|..++. --|+.|.+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++
T Consensus 130 ~NqlS-~lp~~lC~--------------------lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~ 186 (722)
T KOG0532|consen 130 SNQLS-HLPDGLCD--------------------LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG 186 (722)
T ss_pred cchhh-cCChhhhc--------------------CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh
Confidence 99999 88876442 13788889999998 89999998899999999999999 6788899
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c 224 (305)
.+.+|+.|.+..|++. .+|..+..++ |..||+++|+++ .+|. ...+..+..+.++.||...
T Consensus 187 ~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence 9999999999999998 7788888776 999999999999 5554 4666778888899998643
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.2e-12 Score=110.32 Aligned_cols=182 Identities=22% Similarity=0.244 Sum_probs=101.8
Q ss_pred hccCCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhh
Q 040815 17 SLINCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFL 94 (305)
Q Consensus 17 ~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~ 94 (305)
....|++++.|||+.|-+... +......+++|+.|+|+.|++........ ...++.|+.|.|+.|.++..--..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~~lK~L~l~~CGls~k~V~~~~~ 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLSHLKQLVLNSCGLSWKDVQWILL 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhhhhheEEeccCCCCHHHHHHHHH
Confidence 445677888888888776633 22334567788888888887754332222 135677788888888777322223345
Q ss_pred ccchhhhhhhccccc------cCcccccccEEEccCCccccccc--hhhhCCCCCCEEecCCcccccc-CCcc-----cc
Q 040815 95 CWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIP--ASIANLKGLQVLNLQYNNLQGL-IPSS-----LG 160 (305)
Q Consensus 95 ~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~ 160 (305)
.+++|+.|++..+.. ....+..|++|||++|.+. ..+ ...+.++.|..|+++.+.+... .|+. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 566666666655321 1123455666666666654 222 3345566666666666665522 1221 12
Q ss_pred CCCCCCEEeCCCCcCCc-cCccccccCCCCCEEeccCCccc
Q 040815 161 NLTNLESLDLSNKKFAG-RIPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
..++|++|+++.|++.. ..-..+..+++|+.|.+..|.++
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 34566666666666631 11123444555666666666665
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=1.3e-11 Score=97.48 Aligned_cols=77 Identities=29% Similarity=0.350 Sum_probs=28.7
Q ss_pred ccEEEccCCccccccchhh-hCCCCCCEEecCCccccccC-CccccCCCCCCEEeCCCCcCCccC---ccccccCCCCCE
Q 040815 117 LAGIILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQGLI-PSSLGNLTNLESLDLSNKKFAGRI---PQQLVELTFLEF 191 (305)
Q Consensus 117 L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~ 191 (305)
|+.|++++|.++ .+.+.+ ..+++|++|+|++|+|...- -..+..+++|++|+|.+|.++..- ...+..+|+|+.
T Consensus 66 L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 66 LKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp --EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred hhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 333444444444 222222 24566666777666665311 123556677777777777766321 124566788887
Q ss_pred Eec
Q 040815 192 FNV 194 (305)
Q Consensus 192 L~l 194 (305)
||-
T Consensus 145 LD~ 147 (175)
T PF14580_consen 145 LDG 147 (175)
T ss_dssp ETT
T ss_pred eCC
Confidence 764
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.22 E-value=1.2e-11 Score=97.66 Aligned_cols=137 Identities=33% Similarity=0.339 Sum_probs=41.4
Q ss_pred ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhcc-CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815 5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLG-TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83 (305)
Q Consensus 5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 83 (305)
|..+.|. ..+ .+.+...+++|+|++|.|+.+ +.++ .+.+|+.|+|++|.|+.+. . +..++.|+.|++++|+
T Consensus 4 lt~~~i~-~~~-~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~--l~~L~~L~~L~L~~N~ 75 (175)
T PF14580_consen 4 LTANMIE-QIA-QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--G--LPGLPRLKTLDLSNNR 75 (175)
T ss_dssp ------------------------------------S--TT-TT--EEE-TTS--S--T--T------TT--EEE--SS-
T ss_pred ccccccc-ccc-ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--C--ccChhhhhhcccCCCC
Confidence 3444444 233 234555677788888877632 2344 4677788888888777553 1 2457778888888887
Q ss_pred CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcccccc-chhhhCCCCCCEEecCCccccccCCc----c
Q 040815 84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI-PASIANLKGLQVLNLQYNNLQGLIPS----S 158 (305)
Q Consensus 84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~----~ 158 (305)
++ .+.+..... ++.|++|++++|.+...- -..+..+++|+.|+|.+|.++.. +. .
T Consensus 76 I~-~i~~~l~~~------------------lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~v 135 (175)
T PF14580_consen 76 IS-SISEGLDKN------------------LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFV 135 (175)
T ss_dssp ---S-CHHHHHH-------------------TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHH
T ss_pred CC-ccccchHHh------------------CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHH
Confidence 77 565432222 345666667777776321 13456677788888888877632 32 2
Q ss_pred ccCCCCCCEEe
Q 040815 159 LGNLTNLESLD 169 (305)
Q Consensus 159 ~~~l~~L~~L~ 169 (305)
+..+|+|+.||
T Consensus 136 i~~lP~Lk~LD 146 (175)
T PF14580_consen 136 IYKLPSLKVLD 146 (175)
T ss_dssp HHH-TT-SEET
T ss_pred HHHcChhheeC
Confidence 45677777777
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=3.4e-12 Score=106.18 Aligned_cols=134 Identities=27% Similarity=0.277 Sum_probs=99.6
Q ss_pred cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEc
Q 040815 43 GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122 (305)
Q Consensus 43 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~l 122 (305)
.....|++||||+|.|+.+. .+. .-+|.++.|++|+|.+. .+.. .+ .+++|+.|||
T Consensus 281 dTWq~LtelDLS~N~I~~iD-ESv--KL~Pkir~L~lS~N~i~-~v~n--La------------------~L~~L~~LDL 336 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQID-ESV--KLAPKLRRLILSQNRIR-TVQN--LA------------------ELPQLQLLDL 336 (490)
T ss_pred chHhhhhhccccccchhhhh-hhh--hhccceeEEecccccee-eehh--hh------------------hcccceEeec
Confidence 34567888888888887542 222 55788888888888887 4432 11 1456778888
Q ss_pred cCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCcc-CccccccCCCCCEEeccCCcccC
Q 040815 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 123 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
|+|.++ .+..+-..+-++++|.|+.|.+... ..+.++-+|..||+++|+|... --..++++|.|+.+.|.+|++.+
T Consensus 337 S~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 337 SGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 888887 6667777788999999999988732 3477788899999999998742 23467889999999999999985
Q ss_pred CC
Q 040815 202 PI 203 (305)
Q Consensus 202 ~~ 203 (305)
.+
T Consensus 414 ~v 415 (490)
T KOG1259|consen 414 SV 415 (490)
T ss_pred cc
Confidence 43
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.09 E-value=7.2e-11 Score=77.02 Aligned_cols=60 Identities=38% Similarity=0.619 Sum_probs=33.7
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcc
Q 040815 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYL 199 (305)
Q Consensus 140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l 199 (305)
+|++|++++|+++...+.+|..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555544444555555555555555555544445555556666666655543
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.04 E-value=1.8e-10 Score=75.16 Aligned_cols=61 Identities=41% Similarity=0.593 Sum_probs=56.1
Q ss_pred ccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815 115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175 (305)
Q Consensus 115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 175 (305)
++|++|++++|.++...+..|..+++|++|++++|.++...|.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3689999999999966678899999999999999999988888999999999999999975
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.99 E-value=1e-10 Score=97.46 Aligned_cols=104 Identities=25% Similarity=0.286 Sum_probs=70.5
Q ss_pred cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEe
Q 040815 114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193 (305)
Q Consensus 114 ~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 193 (305)
.+.++.|++|.|.+. .+. .+..+++|+.||||+|.++ .+.++-.++-+++.|.|++|.+.. -..+..+-+|..||
T Consensus 306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLD 380 (490)
T ss_pred ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheecc
Confidence 566777778888776 332 2667777888888888777 445555567777788888887642 13456667788899
Q ss_pred ccCCcccC--CCCCCCCCCccCCCccCCCCC
Q 040815 194 VSDNYLTG--PIPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 194 l~~N~l~~--~~p~~~~~~~l~~~~~~~n~~ 222 (305)
+++|++.. .+-..+.++.+..+.+.+||.
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 99998862 122234566677777788875
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.1e-11 Score=102.14 Aligned_cols=175 Identities=19% Similarity=0.180 Sum_probs=119.7
Q ss_pred CEEEccCCccccc--cchhccCCCCCcEEeCCCcccCCCcChhc-cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEE
Q 040815 1 MEAKRSHNLFEGR--IPRSLINCSKLEFLGLGNYQISDTFPSWL-GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 77 (305)
+.||||+|-+..- +-.-...|++|+.|+++.|.+.-...... ..+++|+.|.|+.|.++...-.. .+..+|+|+.|
T Consensus 149 ~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~-~~~~fPsl~~L 227 (505)
T KOG3207|consen 149 RDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW-ILLTFPSLEVL 227 (505)
T ss_pred eeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH-HHHhCCcHHHh
Confidence 4689999988743 33445679999999999999864333222 25789999999999987322111 22568999999
Q ss_pred EccCCcCcccCChhhhhccchhhhhhhccc--cccC-----cccccccEEEccCCccccc-cchh-----hhCCCCCCEE
Q 040815 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRM--MTYN-----KIPDILAGIILSNNRFVGA-IPAS-----IANLKGLQVL 144 (305)
Q Consensus 78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~--~~~~-----~~~~~L~~L~ls~n~l~~~-~p~~-----~~~l~~L~~L 144 (305)
+|..|... .+.......+..|+.|+++++ ..+. ..++.|..|.++.+.+... .|+. ...+++|+.|
T Consensus 228 ~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 228 YLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred hhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence 99999533 222222556778888888763 2222 2366788888888887633 2322 3456899999
Q ss_pred ecCCccccccCC--ccccCCCCCCEEeCCCCcCCcc
Q 040815 145 NLQYNNLQGLIP--SSLGNLTNLESLDLSNKKFAGR 178 (305)
Q Consensus 145 ~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~ 178 (305)
+++.|++. ..+ ..+..+++|+.|.+..|.++.+
T Consensus 307 ~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 307 NISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 99999996 222 2355677888888889988744
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=6.1e-10 Score=94.53 Aligned_cols=198 Identities=19% Similarity=0.179 Sum_probs=97.5
Q ss_pred EEEccCCccccc----cchhccCCCCCcEEeCCCcc---cCCCcCh-------hccCCCCCCEEEccCccCCcccCCCC-
Q 040815 2 EAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQ---ISDTFPS-------WLGTLPKLNVLILRSNIFYGVIEEPR- 66 (305)
Q Consensus 2 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~~~- 66 (305)
+|+||+|.+... +...+.+.+.|+..++++-- ....+|+ ++...++|++|+||+|.+.-..+..+
T Consensus 34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~ 113 (382)
T KOG1909|consen 34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLE 113 (382)
T ss_pred EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHH
Confidence 578888877632 33445555666666665421 1122332 22344566666666666532211111
Q ss_pred -CCCCCCCccEEEccCCcCcccCChhhh-------------hccchhhhhhhccccc----------cCcccccccEEEc
Q 040815 67 -TGCGFSKLRIIDLSNNRFSGNLPSKSF-------------LCWNAMKIVNARRMMT----------YNKIPDILAGIIL 122 (305)
Q Consensus 67 -~~~~l~~L~~L~L~~n~l~g~~p~~~~-------------~~l~~L~~l~l~~~~~----------~~~~~~~L~~L~l 122 (305)
.+.++..|+.|+|.+|.+. ..-...+ ..-+.|+++...+++. ..+..+.|+.+.+
T Consensus 114 ~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~ 192 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRL 192 (382)
T ss_pred HHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEE
Confidence 1134556666666666554 2221111 1112222222222111 1122345666666
Q ss_pred cCCccccc----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCccCcccc-----ccCCCC
Q 040815 123 SNNRFVGA----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQL-----VELTFL 189 (305)
Q Consensus 123 s~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L 189 (305)
..|.+... +...+..+++|++|||..|-|+.. +...+..+++|+.|++++|.+...-...+ ...|+|
T Consensus 193 ~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L 272 (382)
T KOG1909|consen 193 SQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSL 272 (382)
T ss_pred ecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCC
Confidence 66665411 233455667777777777766532 22234455667777777766654333222 124666
Q ss_pred CEEeccCCccc
Q 040815 190 EFFNVSDNYLT 200 (305)
Q Consensus 190 ~~L~l~~N~l~ 200 (305)
+.+++.+|.++
T Consensus 273 ~vl~l~gNeIt 283 (382)
T KOG1909|consen 273 EVLELAGNEIT 283 (382)
T ss_pred ceeccCcchhH
Confidence 77777777665
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.85 E-value=1.7e-10 Score=106.23 Aligned_cols=109 Identities=24% Similarity=0.347 Sum_probs=82.7
Q ss_pred cccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCc-cccCCCCCCEEeCCCCcCCccCccccccCCCCC
Q 040815 112 KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS-SLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE 190 (305)
Q Consensus 112 ~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 190 (305)
+.++.++.|+|++|+++. +. .+..++.|++|||++|.+. .+|. ....+. |+.|.+++|.++. + ..+.++.+|+
T Consensus 184 qll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~ 257 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLY 257 (1096)
T ss_pred HHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhh
Confidence 346778888999999983 33 7888999999999999998 4554 333444 9999999999873 3 2467899999
Q ss_pred EEeccCCcccCCC--CCCCCCCccCCCccCCCCCCCCC
Q 040815 191 FFNVSDNYLTGPI--PQGKQFATFDNTSFDGNSGLCGK 226 (305)
Q Consensus 191 ~L~l~~N~l~~~~--p~~~~~~~l~~~~~~~n~~~c~~ 226 (305)
.||+++|-+.+-- .....+..+..+.++|||..|..
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 9999999887532 11233456677789999988854
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=8.6e-10 Score=100.30 Aligned_cols=93 Identities=24% Similarity=0.295 Sum_probs=49.2
Q ss_pred EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815 4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83 (305)
Q Consensus 4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 83 (305)
.+..|.+. .+-..+..+++|+.|++.+|+|... ...+..+++|++|++++|.|+.+.+. ..++.|+.|++++|.
T Consensus 78 ~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 78 NLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNL 151 (414)
T ss_pred ccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccch----hhccchhhheeccCc
Confidence 34445444 2223455666666666666666532 22245566666666666666554322 335556666666666
Q ss_pred CcccCChhhhhccchhhhhhhc
Q 040815 84 FSGNLPSKSFLCWNAMKIVNAR 105 (305)
Q Consensus 84 l~g~~p~~~~~~l~~L~~l~l~ 105 (305)
++ .+.. +..+..|+.++++
T Consensus 152 i~-~~~~--~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 152 IS-DISG--LESLKSLKLLDLS 170 (414)
T ss_pred ch-hccC--CccchhhhcccCC
Confidence 66 4442 3334444444433
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=8.3e-10 Score=100.41 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=39.2
Q ss_pred CCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchh
Q 040815 20 NCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM 99 (305)
Q Consensus 20 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L 99 (305)
.+..++.+.+..|.+.. +-..+..+.+|..|++.+|.|..+... +..+++|++|++++|.++ .+.. +..+..|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL---LSSLVNLQVLDLSFNKIT-KLEG--LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc---hhhhhcchheeccccccc-cccc--hhhccch
Confidence 34455555555555542 222344555666666666666544221 134566666666666665 3332 3334444
Q ss_pred hhhhhc
Q 040815 100 KIVNAR 105 (305)
Q Consensus 100 ~~l~l~ 105 (305)
+.|++.
T Consensus 143 ~~L~l~ 148 (414)
T KOG0531|consen 143 KELNLS 148 (414)
T ss_pred hhheec
Confidence 444443
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=5.9e-09 Score=88.63 Aligned_cols=184 Identities=20% Similarity=0.244 Sum_probs=132.7
Q ss_pred hhccCCCCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcccCCC---------CCCCCCCCccEEEccCC
Q 040815 16 RSLINCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEP---------RTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 16 ~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~~~l~~L~~L~L~~n 82 (305)
+.+..+..+++++|++|.+... +...+...++|+.-++++- ++|..... ..+...++|+.+|||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3556789999999999999633 3344566788999888865 33332211 12245679999999999
Q ss_pred cCcccCCh---hhhhccchhhhhhhcccc-------------------ccCcccccccEEEccCCccccc----cchhhh
Q 040815 83 RFSGNLPS---KSFLCWNAMKIVNARRMM-------------------TYNKIPDILAGIILSNNRFVGA----IPASIA 136 (305)
Q Consensus 83 ~l~g~~p~---~~~~~l~~L~~l~l~~~~-------------------~~~~~~~~L~~L~ls~n~l~~~----~p~~~~ 136 (305)
.+.-.-+. ..+.....|+.|++.++. ......+.|+.++.+.|++... +...|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 98733332 235667889999987621 1122367899999999998632 345577
Q ss_pred CCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815 137 NLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 137 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
..+.|+.+.++.|.|... +-.++..+++|+.|||..|.++.. +...+..++.|+.|+++++.+.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 788999999999988622 224577899999999999998753 3445677889999999999886
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.72 E-value=7.6e-10 Score=81.98 Aligned_cols=46 Identities=30% Similarity=0.512 Sum_probs=19.7
Q ss_pred ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 130 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
.+|..+..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.
T Consensus 91 dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 91 DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 33333444444444444444444 23333333444444444444443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.6e-09 Score=90.27 Aligned_cols=175 Identities=20% Similarity=0.150 Sum_probs=87.4
Q ss_pred EEEccCCccccc-cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCcc-CCcccCCCCCCCCCCCccEEEc
Q 040815 2 EAKRSHNLFEGR-IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNI-FYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 2 ~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L 79 (305)
+||||+..|+.. +-..+..+..|+.|.|.++++.+.+...+..-.+|+.|+|+.+. ++. ......+.+++.|+.|++
T Consensus 189 ~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~LNl 267 (419)
T KOG2120|consen 189 HLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLDELNL 267 (419)
T ss_pred HhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhhHhhcCc
Confidence 456666666522 33345556667777777777666666666666667777776653 111 000111245666777777
Q ss_pred cCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcc--c-cccchhhhCCCCCCEEecCCcc-ccccC
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF--V-GAIPASIANLKGLQVLNLQYNN-LQGLI 155 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l--~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~ 155 (305)
+.+.+..+.-..+... .-+.|..|++++..- . ..+..-...+++|..||||.|. ++...
T Consensus 268 sWc~l~~~~Vtv~V~h-----------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 268 SWCFLFTEKVTVAVAH-----------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred hHhhccchhhhHHHhh-----------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 7766553332222221 122334444444321 1 0111122345666666666543 33222
Q ss_pred CccccCCCCCCEEeCCCCcCCccCccc---cccCCCCCEEeccC
Q 040815 156 PSSLGNLTNLESLDLSNKKFAGRIPQQ---LVELTFLEFFNVSD 196 (305)
Q Consensus 156 p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~l~~ 196 (305)
-..|.+++-|++|.++.|-. .+|.. +...|.|.+||+.+
T Consensus 331 ~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 331 FQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 23355566666666666532 34443 34456677777653
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.53 E-value=6.6e-09 Score=77.07 Aligned_cols=112 Identities=25% Similarity=0.293 Sum_probs=84.4
Q ss_pred CCCcEEeCCCcccCCCcChhc---cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815 22 SKLEFLGLGNYQISDTFPSWL---GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA 98 (305)
Q Consensus 22 ~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~ 98 (305)
..+..+||+++++- .+++.. .....|+..+|++|.+....+... ..++.+++++|++|.++ ++|.+ +..++.
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft--~kf~t~t~lNl~~neis-dvPeE-~Aam~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFT--IKFPTATTLNLANNEIS-DVPEE-LAAMPA 101 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHh--hccchhhhhhcchhhhh-hchHH-HhhhHH
Confidence 45667889998883 455544 355678888999999976544333 45678999999999999 99988 777666
Q ss_pred hhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcc
Q 040815 99 MKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS 158 (305)
Q Consensus 99 L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 158 (305)
|+.++ ++.|.+. ..|..+..+.++..|+..+|.+. .+|-.
T Consensus 102 Lr~lN------------------l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 102 LRSLN------------------LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhcc------------------cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 55555 8899988 77788888999999999999877 44443
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.40 E-value=1.7e-07 Score=91.85 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=44.7
Q ss_pred hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhcc
Q 040815 17 SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCW 96 (305)
Q Consensus 17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l 96 (305)
.|..++.|+.|||++|.=.+.+|..++.+-+|++|+|++..+... |..+ ..+..|.+|++..+.....+ +.....+
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L-P~~l--~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L 641 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL-PSGL--GNLKKLIYLNLEVTGRLESI-PGILLEL 641 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc-chHH--HHHHhhheeccccccccccc-cchhhhc
Confidence 355566666666665544455666666666666666666655532 2222 55556666666555443222 2334445
Q ss_pred chhhhhhhc
Q 040815 97 NAMKIVNAR 105 (305)
Q Consensus 97 ~~L~~l~l~ 105 (305)
.+|++|.+.
T Consensus 642 ~~Lr~L~l~ 650 (889)
T KOG4658|consen 642 QSLRVLRLP 650 (889)
T ss_pred ccccEEEee
Confidence 555555443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=4.5e-07 Score=75.95 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=106.1
Q ss_pred CCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccc
Q 040815 20 NCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWN 97 (305)
Q Consensus 20 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~ 97 (305)
..+.++.+||.+|.|+.. +...+.++|.|++|+|+.|.+...+.... ....+|+.|-|.+..+...-.......++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 356788888888888742 33345578888888888888865544332 34668888888877776555555566677
Q ss_pred hhhhhhhcccc------c---cCcccccccEEEccCCcccc--ccchhhhCCCCCCEEecCCccccccC-CccccCCCCC
Q 040815 98 AMKIVNARRMM------T---YNKIPDILAGIILSNNRFVG--AIPASIANLKGLQVLNLQYNNLQGLI-PSSLGNLTNL 165 (305)
Q Consensus 98 ~L~~l~l~~~~------~---~~~~~~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L 165 (305)
.++.++++.+. + ....-+.+++|....|.... .+..--.-.+++..+.+..|.+...- -..+...+.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 77777655420 0 00111233333333332210 00000112356667777777665321 2335556677
Q ss_pred CEEeCCCCcCCcc-CccccccCCCCCEEeccCCcccCCCC
Q 040815 166 ESLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 166 ~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~~p 204 (305)
..|+|+.|+|..- --+.+..++.|..|.+++|++..++-
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 7788888877531 12356677888888888887765443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=2e-08 Score=92.98 Aligned_cols=60 Identities=28% Similarity=0.316 Sum_probs=28.9
Q ss_pred CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCC
Q 040815 24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLP 89 (305)
Q Consensus 24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p 89 (305)
|...+.++|.+. ....++.-++.|+.|+|++|+++..- .+..++.|++|||++|.+. .+|
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~-~vp 225 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLR-HVP 225 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhc-ccc
Confidence 444455555553 34444444555555555555554331 1134555555555555554 444
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=8.5e-06 Score=72.53 Aligned_cols=135 Identities=15% Similarity=0.202 Sum_probs=70.9
Q ss_pred ccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC-cCcccCChhhhhcc
Q 040815 18 LINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN-RFSGNLPSKSFLCW 96 (305)
Q Consensus 18 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~g~~p~~~~~~l 96 (305)
+..+.+++.|++++|.++ .+|. -..+|+.|.++++.--...|..+ .++|+.|++++| .+. .+|..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~-sLP~s----- 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS-GLPES----- 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc-ccccc-----
Confidence 334677888888888775 4451 13368888887643222333322 247788888777 444 55543
Q ss_pred chhhhhhhcc--ccccCcccccccEEEccCCccc--cccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC
Q 040815 97 NAMKIVNARR--MMTYNKIPDILAGIILSNNRFV--GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172 (305)
Q Consensus 97 ~~L~~l~l~~--~~~~~~~~~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 172 (305)
|+.|++.. ...+...|+.|+.|.+.+++.. ..+|..+ .++|+.|++++|... ..|..+. .+|+.|+++.
T Consensus 114 --Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 114 --VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred --cceEEeCCCCCcccccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 22222221 2233445566666666432211 0111111 146777777776655 3343332 4677777766
Q ss_pred C
Q 040815 173 K 173 (305)
Q Consensus 173 N 173 (305)
|
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.8e-06 Score=51.75 Aligned_cols=36 Identities=42% Similarity=0.660 Sum_probs=17.0
Q ss_pred CCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815 140 GLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 140 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
+|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 23334555555555555555544
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.7e-06 Score=51.92 Aligned_cols=36 Identities=44% Similarity=0.677 Sum_probs=18.1
Q ss_pred CCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc
Q 040815 164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
+|++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.11 E-value=3.5e-06 Score=82.76 Aligned_cols=78 Identities=33% Similarity=0.446 Sum_probs=35.7
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS 195 (305)
Q Consensus 117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 195 (305)
|+.|||++|.--+.+|..++.+-+|+.|+|++..++ .+|..+.++..|.+||+..+.-...+|.....+++|++|.+.
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 334444444333344555555555555555555444 444445555555555554443333333434444444444443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=1.2e-06 Score=72.51 Aligned_cols=193 Identities=20% Similarity=0.186 Sum_probs=114.1
Q ss_pred EEEccCCccccc----cchhccCCCCCcEEeCCCcccC---CCcCh-------hccCCCCCCEEEccCccCCcccCCCC-
Q 040815 2 EAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQIS---DTFPS-------WLGTLPKLNVLILRSNIFYGVIEEPR- 66 (305)
Q Consensus 2 ~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~---~~~p~-------~~~~l~~L~~L~L~~n~l~~~~~~~~- 66 (305)
++|||+|.|... +...+.+-.+|+..++++--.. ..+++ ++.+|++|+..+||.|.+....|...
T Consensus 34 evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~ 113 (388)
T COG5238 34 EVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELG 113 (388)
T ss_pred EEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHH
Confidence 578888888744 3334555677777777764221 12232 34578889999999998865444321
Q ss_pred -CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcccccc----chhhhCCCCC
Q 040815 67 -TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAI----PASIANLKGL 141 (305)
Q Consensus 67 -~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~----p~~~~~l~~L 141 (305)
.++.-+.|.+|.|++|.+- .+...-++. .|..|-.+ ... ..-+.|+.++...|++..-. ...+.....|
T Consensus 114 d~is~~t~l~HL~l~NnGlG-p~aG~rigk--al~~la~n--KKa-a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 114 DLISSSTDLVHLKLNNNGLG-PIAGGRIGK--ALFHLAYN--KKA-ADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred HHHhcCCCceeEEeecCCCC-ccchhHHHH--HHHHHHHH--hhh-ccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 1245678889999988875 444333321 12222110 000 11456888888888875211 1223344578
Q ss_pred CEEecCCccccccCC-----ccccCCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815 142 QVLNLQYNNLQGLIP-----SSLGNLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 142 ~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
+++.+..|.|...-- ..+..+.+|+.|||..|-++-. +...+..++.|+.|.+.++.++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 888888887652211 1123567888888888877632 2334556677788888777765
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1.1e-05 Score=64.02 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=79.0
Q ss_pred CcEEeCCCcccCCCcChhccC-CCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhh
Q 040815 24 LEFLGLGNYQISDTFPSWLGT-LPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV 102 (305)
Q Consensus 24 L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l 102 (305)
=+.++|.+.++.. .+.++. +.+...+||++|.+.... .+ ..++.|.+|.|++|+++ .|.+..-.
T Consensus 21 e~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~~l~--~l--p~l~rL~tLll~nNrIt-~I~p~L~~-------- 85 (233)
T KOG1644|consen 21 ERELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLRKLD--NL--PHLPRLHTLLLNNNRIT-RIDPDLDT-------- 85 (233)
T ss_pred ccccccccccccc--hhhccccccccceecccccchhhcc--cC--CCccccceEEecCCcce-eeccchhh--------
Confidence 4556666666532 112332 346777888888775442 22 45778888888888887 55543221
Q ss_pred hhccccccCcccccccEEEccCCccccccc--hhhhCCCCCCEEecCCccccccC---CccccCCCCCCEEeCCCCc
Q 040815 103 NARRMMTYNKIPDILAGIILSNNRFVGAIP--ASIANLKGLQVLNLQYNNLQGLI---PSSLGNLTNLESLDLSNKK 174 (305)
Q Consensus 103 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~L~~N~ 174 (305)
..+.|..|.|.+|++. .+. +-+..++.|+.|.+-+|.++..- --.+..+++|+.||.+.=.
T Consensus 86 ----------~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 86 ----------FLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ----------hccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 2455677778888776 221 22557788999999898877321 1236678999999976543
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.5e-07 Score=77.48 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=60.1
Q ss_pred cccccEEEccCCccccccch-hhhCC-CCCCEEecCCccc---cccCCccccCCCCCCEEeCCCC-cCCccCccccccCC
Q 040815 114 PDILAGIILSNNRFVGAIPA-SIANL-KGLQVLNLQYNNL---QGLIPSSLGNLTNLESLDLSNK-KFAGRIPQQLVELT 187 (305)
Q Consensus 114 ~~~L~~L~ls~n~l~~~~p~-~~~~l-~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~ 187 (305)
+..|.+|+++++.+....-. .+.+. +.|+.|+|++..- ...+..-...+++|.+|||++| .++...-..|..++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 55677777999887644322 22222 5688999988532 1122222457899999999987 56655556778899
Q ss_pred CCCEEeccCCcccCCCCC
Q 040815 188 FLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 188 ~L~~L~l~~N~l~~~~p~ 205 (305)
.|++|.++.+.. .+|+
T Consensus 339 ~L~~lSlsRCY~--i~p~ 354 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPE 354 (419)
T ss_pred hheeeehhhhcC--CChH
Confidence 999999987753 4554
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=7.3e-05 Score=66.71 Aligned_cols=125 Identities=16% Similarity=0.208 Sum_probs=82.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCc-cCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSN-IFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
+.|++++|.|+ .+| . -..+|+.|+++++.--..+|+.+ ..+|+.|++++| .+... ...|+.|++
T Consensus 55 ~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---------P~sLe~L~L 119 (426)
T PRK15386 55 GRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---------PESVRSLEI 119 (426)
T ss_pred CEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc---------ccccceEEe
Confidence 46899999888 566 2 24579999998754334667644 358999999998 54322 245788888
Q ss_pred cCCcCc--ccCChhhhhccchhhhhhhccc-----cc-cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815 80 SNNRFS--GNLPSKSFLCWNAMKIVNARRM-----MT-YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN 150 (305)
Q Consensus 80 ~~n~l~--g~~p~~~~~~l~~L~~l~l~~~-----~~-~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 150 (305)
+.+... +.+|. +|+.|.+... .. ....|++|+.|++++|... ..|..+. .+|+.|+++.+.
T Consensus 120 ~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 120 KGSATDSIKNVPN-------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCCCCcccccCcc-------hHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 876643 24554 3455554220 01 1135689999999998866 4555443 589999998763
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=6.3e-05 Score=59.85 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=58.8
Q ss_pred cccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCcc-CccccccCCCCC
Q 040815 112 KIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLE 190 (305)
Q Consensus 112 ~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~ 190 (305)
........+||++|.+. .+ +.|..++.|..|.|++|.|+..-|.--.-+++|..|.|.+|.|... .-+-+..+|+|+
T Consensus 39 ~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 39 ATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 34556777888888775 22 3466677888888888888866555444567788888888877531 112355677888
Q ss_pred EEeccCCccc
Q 040815 191 FFNVSDNYLT 200 (305)
Q Consensus 191 ~L~l~~N~l~ 200 (305)
+|.+-+|+.+
T Consensus 117 ~Ltll~Npv~ 126 (233)
T KOG1644|consen 117 YLTLLGNPVE 126 (233)
T ss_pred eeeecCCchh
Confidence 8888877765
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=5.7e-06 Score=69.51 Aligned_cols=201 Identities=14% Similarity=0.074 Sum_probs=104.8
Q ss_pred CCCCcEEeCCCcccCCCcC-hhcc-CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815 21 CSKLEFLGLGNYQISDTFP-SWLG-TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA 98 (305)
Q Consensus 21 l~~L~~L~L~~n~l~~~~p-~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~ 98 (305)
+..++.|-+.++.|...-. ..|+ ..+.++.|||.+|.|+...........+|.|++|+++.|.++..|... -....+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccc
Confidence 3344455566665542211 1233 367899999999999764332223367999999999999998433321 012334
Q ss_pred hhhhhhccc-------cccCcccccccEEEccCCcccccc--chhhhCC-CCCCEEecCCcccccc--CCccccCCCCCC
Q 040815 99 MKIVNARRM-------MTYNKIPDILAGIILSNNRFVGAI--PASIANL-KGLQVLNLQYNNLQGL--IPSSLGNLTNLE 166 (305)
Q Consensus 99 L~~l~l~~~-------~~~~~~~~~L~~L~ls~n~l~~~~--p~~~~~l-~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~ 166 (305)
|+.+-+++. ..+...++.+++|.+|.|++.... .+..... +.+.+|.+-.|...-- .-.--.-.+++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 444444331 112222444555555555332100 0000001 1223333222221100 000001236677
Q ss_pred EEeCCCCcCCcc-CccccccCCCCCEEeccCCcccCC--CCCCCCCCccCCCccCCCCC
Q 040815 167 SLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTGP--IPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 167 ~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~--~p~~~~~~~l~~~~~~~n~~ 222 (305)
.+.+..|.+... -......+|.+..|+|+.|++... +.+...++.+..+....+|.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 777777866532 223456678888999999988632 33335666777777777764
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.56 E-value=0.0001 Score=61.40 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=104.5
Q ss_pred hccCCCCCcEEeCCCcccCCCcChhc----cCCCCCCEEEccCccCCcccCCCC-----------CCCCCCCccEEEccC
Q 040815 17 SLINCSKLEFLGLGNYQISDTFPSWL----GTLPKLNVLILRSNIFYGVIEEPR-----------TGCGFSKLRIIDLSN 81 (305)
Q Consensus 17 ~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~~l~~L~~L~L~~ 81 (305)
++.+|++|+..+||+|.+....|..+ +.-+.|..|.|++|.+.-....-+ .+.+-|.|++.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 55689999999999999986666544 456889999999997742111111 124568999999999
Q ss_pred CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc-----cchhhhCCCCCCEEecCCccccccCC
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA-----IPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
|++. .-|.......-. .-..|+.+.+..|.|.-. .-..+..+.+|+.|||..|-++-.-.
T Consensus 167 NRle-ngs~~~~a~~l~--------------sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 167 NRLE-NGSKELSAALLE--------------SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred chhc-cCcHHHHHHHHH--------------hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 9987 444332111000 012355666666765421 11123346778888888887763322
Q ss_pred ----ccccCCCCCCEEeCCCCcCCccCccccc------cCCCCCEEeccCCcccCC
Q 040815 157 ----SSLGNLTNLESLDLSNKKFAGRIPQQLV------ELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 157 ----~~~~~l~~L~~L~L~~N~l~~~~p~~~~------~l~~L~~L~l~~N~l~~~ 202 (305)
.++...+.|+.|.+..|.++..-..++. ..|+|..|-..+|...+.
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 2233445677888888777654333221 246677777777766543
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.56 E-value=0.00037 Score=52.27 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=29.4
Q ss_pred hhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 16 RSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 16 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
.+|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +.......+ ..++.++.+.+.+
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F--~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF--SNCKSLESITFPN 67 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTT--TT-TT-EEEEETS
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeee--ecccccccccccc
Confidence 3566666777777664 344444455666666777776654 444433333 5555666666654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=0.00011 Score=70.53 Aligned_cols=55 Identities=24% Similarity=0.389 Sum_probs=24.2
Q ss_pred CCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815 45 LPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN 103 (305)
Q Consensus 45 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~ 103 (305)
+|+|+.|.+++-.+....- .....++++|..||+|+.+++ .+ ..++.+.+|+.|.
T Consensus 147 LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVLS 201 (699)
T ss_pred CcccceEEecCceecchhH-HHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHHh
Confidence 4555555555543322100 000134555555555555555 33 1144444554444
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00064 Score=50.96 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=54.0
Q ss_pred hhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccE
Q 040815 40 SWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAG 119 (305)
Q Consensus 40 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~ 119 (305)
..|.++.+|+.+.+.. .+..+....| ..+++|+.+++.++ +. .++..+|....+ ++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F--~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~------------------l~~ 62 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAF--SNCTSLKSINFPNN-LT-SIGDNAFSNCKS------------------LES 62 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTT--TT-TT-SEEEESST-TS-CE-TTTTTT-TT-------------------EE
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhc--cccccccccccccc-cc-ccceeeeecccc------------------ccc
Confidence 4566777888888774 4555555555 66777888888775 55 666666655433 344
Q ss_pred EEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCC
Q 040815 120 IILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFL 189 (305)
Q Consensus 120 L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 189 (305)
+.+.+ .+.......|..++.|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 63 i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 63 ITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 44543 232223344555667777777554 443344456565 666666654 3332333445554444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.41 E-value=5.9e-05 Score=72.46 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=76.9
Q ss_pred CCccEEEccCCcCc-ccCChhhhhccchhhhhhhccc----c---ccCcccccccEEEccCCccccccchhhhCCCCCCE
Q 040815 72 SKLRIIDLSNNRFS-GNLPSKSFLCWNAMKIVNARRM----M---TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQV 143 (305)
Q Consensus 72 ~~L~~L~L~~n~l~-g~~p~~~~~~l~~L~~l~l~~~----~---~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 143 (305)
.+|++||+++.... ...|......+|+|+.|.+.+. . ......++|..||+|+.+++. + ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 46777777665432 2233333344566666655441 1 122346778888888888873 3 55778888888
Q ss_pred EecCCccccc-cCCccccCCCCCCEEeCCCCcCCccC--c----cccccCCCCCEEeccCCcccC
Q 040815 144 LNLQYNNLQG-LIPSSLGNLTNLESLDLSNKKFAGRI--P----QQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 144 L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--p----~~~~~l~~L~~L~l~~N~l~~ 201 (305)
|.+.+=.+.. ..-..+.++++|+.||+|..+..... . +.-..+|.|+.||.|+..+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 8777655542 11123557888888888887654221 1 122347888888888776653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00024 Score=58.79 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=34.1
Q ss_pred cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815 14 IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS 85 (305)
Q Consensus 14 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (305)
+......+..|+.|++.+..++.. ..|-.+++|+.|.++.|.+.........+..+++|++++++.|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 333334455555555555544321 1233456666666666633222211222234466666666666654
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00047 Score=57.08 Aligned_cols=76 Identities=32% Similarity=0.395 Sum_probs=39.8
Q ss_pred ccEEEccCC--ccccccchhhhCCCCCCEEecCCccccccCCcc---ccCCCCCCEEeCCCCcCCccC---ccccccCCC
Q 040815 117 LAGIILSNN--RFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS---LGNLTNLESLDLSNKKFAGRI---PQQLVELTF 188 (305)
Q Consensus 117 L~~L~ls~n--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~ 188 (305)
|+.|++|.| .+.+.++.-...+++|++++|+.|++.. +.. +..+.+|..||+.+|..+..- -..|.-+++
T Consensus 67 LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~ 144 (260)
T KOG2739|consen 67 LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPS 144 (260)
T ss_pred hhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhh
Confidence 444445555 3333333333445777777777777662 222 334556667777777655311 123444566
Q ss_pred CCEEec
Q 040815 189 LEFFNV 194 (305)
Q Consensus 189 L~~L~l 194 (305)
|++||-
T Consensus 145 L~~LD~ 150 (260)
T KOG2739|consen 145 LKYLDG 150 (260)
T ss_pred hccccc
Confidence 666643
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=8.8e-05 Score=61.96 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=64.7
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
|+.=++.|+.+ . -...++.|+.|.|+-|.|+..-| |..+++|++|+|..|.|..+ ...+.+.++++|+.|.|..|
T Consensus 24 LNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sl-dEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 24 LNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESL-DELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hcccCCCccHH-H-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccH-HHHHHHhcCchhhhHhhccC
Confidence 44445555522 1 23467888888888888875443 67788888888888888643 23345578888888888888
Q ss_pred cCcccCChhh----hhccchhhhhh
Q 040815 83 RFSGNLPSKS----FLCWNAMKIVN 103 (305)
Q Consensus 83 ~l~g~~p~~~----~~~l~~L~~l~ 103 (305)
.-.|.-+... +..+++|+.||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 8776655432 44566776666
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.28 E-value=0.0018 Score=32.33 Aligned_cols=18 Identities=33% Similarity=0.670 Sum_probs=8.6
Q ss_pred CcEEeCCCcccCCCcChhc
Q 040815 24 LEFLGLGNYQISDTFPSWL 42 (305)
Q Consensus 24 L~~L~L~~n~l~~~~p~~~ 42 (305)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 344433
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.22 E-value=0.002 Score=32.13 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=4.4
Q ss_pred CEEecCCcccc
Q 040815 142 QVLNLQYNNLQ 152 (305)
Q Consensus 142 ~~L~Ls~N~l~ 152 (305)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0011 Score=55.69 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=34.3
Q ss_pred CCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815 21 CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS 85 (305)
Q Consensus 21 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (305)
+.+.+.|+.-++.++++ .....++.|++|.|+-|+|+.+.| + ..+++|+.|+|..|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l--~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--L--QRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--H--HHHHHHHHHHHHhcccc
Confidence 45566666666666432 123456667777777776665432 2 44566666666666555
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.73 E-value=7.1e-05 Score=68.84 Aligned_cols=83 Identities=22% Similarity=0.105 Sum_probs=46.8
Q ss_pred EEccCCccccc----cchhccCCCCCcEEeCCCcccCCCcCh----hccCC-CCCCEEEccCccCCcccCCCC--CCCCC
Q 040815 3 AKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISDTFPS----WLGTL-PKLNVLILRSNIFYGVIEEPR--TGCGF 71 (305)
Q Consensus 3 L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~~~~~~~~--~~~~l 71 (305)
|+|.+|.+... +-..+....+|+.|++++|.+.+.--. .+... ..+++|++..|.++....... .+...
T Consensus 92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~ 171 (478)
T KOG4308|consen 92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKN 171 (478)
T ss_pred hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcc
Confidence 56667776643 233555677788888888877632111 12222 456667777777654322111 11235
Q ss_pred CCccEEEccCCcCc
Q 040815 72 SKLRIIDLSNNRFS 85 (305)
Q Consensus 72 ~~L~~L~L~~n~l~ 85 (305)
..++.+|++.|.+.
T Consensus 172 ~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 172 EHLTELDLSLNGLI 185 (478)
T ss_pred cchhHHHHHhcccc
Confidence 66777777777663
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.68 E-value=0.011 Score=30.66 Aligned_cols=23 Identities=48% Similarity=0.790 Sum_probs=17.9
Q ss_pred CCCccEEEccCCcCcccCChhhhh
Q 040815 71 FSKLRIIDLSNNRFSGNLPSKSFL 94 (305)
Q Consensus 71 l~~L~~L~L~~n~l~g~~p~~~~~ 94 (305)
+++|+.|+|++|++. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 88877664
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.68 E-value=0.011 Score=30.66 Aligned_cols=23 Identities=48% Similarity=0.790 Sum_probs=17.9
Q ss_pred CCCccEEEccCCcCcccCChhhhh
Q 040815 71 FSKLRIIDLSNNRFSGNLPSKSFL 94 (305)
Q Consensus 71 l~~L~~L~L~~n~l~g~~p~~~~~ 94 (305)
+++|+.|+|++|++. .+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467888888888888 88877664
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.09 E-value=0.013 Score=27.11 Aligned_cols=13 Identities=62% Similarity=0.984 Sum_probs=4.9
Q ss_pred CccEEEccCCcCc
Q 040815 73 KLRIIDLSNNRFS 85 (305)
Q Consensus 73 ~L~~L~L~~n~l~ 85 (305)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3445555555444
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.11 E-value=0.001 Score=54.30 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=55.2
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS 195 (305)
Q Consensus 116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 195 (305)
..+.||++.|++- ..-..|.-++.+..||++.|++. ..|..++.+..+..+++..|.++ ..|.++...+.++++++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 3555667776665 44445556666777777777776 56666776667777777777766 667777777777777777
Q ss_pred CCccc
Q 040815 196 DNYLT 200 (305)
Q Consensus 196 ~N~l~ 200 (305)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 77654
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.15 E-value=0.0072 Score=49.56 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=55.8
Q ss_pred CCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCC
Q 040815 69 CGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY 148 (305)
Q Consensus 69 ~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 148 (305)
......+.||++.|++. .+-.. |+.++.+. .||++.|.+. ..|..++....+..+++..
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n-~s~~t~~~------------------rl~~sknq~~-~~~~d~~q~~e~~~~~~~~ 97 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKN-FSILTRLV------------------RLDLSKNQIK-FLPKDAKQQRETVNAASHK 97 (326)
T ss_pred hccceeeeehhhhhHHH-hhccc-hHHHHHHH------------------HHhccHhhHh-hChhhHHHHHHHHHHHhhc
Confidence 34566677777777665 33322 33333333 3346666665 6677777777777777777
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCC
Q 040815 149 NNLQGLIPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
|..+ ..|.+++..+.++++++.+|.+.
T Consensus 98 n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 98 NNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchh-hCCccccccCCcchhhhccCcch
Confidence 7776 66777888888888888777654
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.31 E-value=0.14 Score=26.44 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=7.9
Q ss_pred CCCcEEeCCCcccC
Q 040815 22 SKLEFLGLGNYQIS 35 (305)
Q Consensus 22 ~~L~~L~L~~n~l~ 35 (305)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555554
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.31 E-value=0.14 Score=26.44 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=7.9
Q ss_pred CCCcEEeCCCcccC
Q 040815 22 SKLEFLGLGNYQIS 35 (305)
Q Consensus 22 ~~L~~L~L~~n~l~ 35 (305)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45555555555554
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.55 E-value=0.002 Score=59.39 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=96.0
Q ss_pred EEEccCCccccc----cchhccCC-CCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcc--c--CCCC--
Q 040815 2 EAKRSHNLFEGR----IPRSLINC-SKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGV--I--EEPR-- 66 (305)
Q Consensus 2 ~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~~-- 66 (305)
.|+|++|.+.+. +-..+... ..+++|++..|.++.. +.+.+....+++.++++.|.+... . +...
T Consensus 119 ~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~ 198 (478)
T KOG4308|consen 119 QLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALES 198 (478)
T ss_pred HhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhh
Confidence 478888988843 22233333 6678889988888754 445566778999999999987411 1 1111
Q ss_pred CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc----cchhhhCC-CCC
Q 040815 67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA----IPASIANL-KGL 141 (305)
Q Consensus 67 ~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~----~p~~~~~l-~~L 141 (305)
.+....++++|.++++.++ +..+ .. ++. .+......+.++++..|.+... ....+..+ ..+
T Consensus 199 ~~~~~~~le~L~L~~~~~t---~~~c----~~---l~~----~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 199 AASPLSSLETLKLSRCGVT---SSSC----AL---LDE----VLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred hhcccccHHHHhhhhcCcC---hHHH----HH---HHH----HHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence 0124667888888888776 1110 00 000 0001112244566777776533 22333444 567
Q ss_pred CEEecCCccccccCC----ccccCCCCCCEEeCCCCcCCc
Q 040815 142 QVLNLQYNNLQGLIP----SSLGNLTNLESLDLSNKKFAG 177 (305)
Q Consensus 142 ~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~ 177 (305)
++++++.|.|+..-. ..+..+..++.+.++.|.+..
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 888888888875433 334566778888888887764
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.42 E-value=0.039 Score=27.94 Aligned_cols=13 Identities=62% Similarity=0.910 Sum_probs=5.1
Q ss_pred CCCEEeCCCCcCC
Q 040815 164 NLESLDLSNKKFA 176 (305)
Q Consensus 164 ~L~~L~L~~N~l~ 176 (305)
+|++|+|++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.28 E-value=0.083 Score=42.48 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=56.6
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecCCccccccC-Ccccc-CCCCCCEEeCCCC-cCCccCccccccCCCCCEE
Q 040815 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLI-PSSLG-NLTNLESLDLSNK-KFAGRIPQQLVELTFLEFF 192 (305)
Q Consensus 116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~-~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L 192 (305)
.++.+|-++..+..+--+.+..++.++.|.+.++.--+.- -+-++ -.++|+.|++++| +|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3778888888888766677778888888888777532110 00011 3478999999988 6776555667788888888
Q ss_pred eccC
Q 040815 193 NVSD 196 (305)
Q Consensus 193 ~l~~ 196 (305)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 80
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=88.23 E-value=0.67 Score=37.41 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=16.2
Q ss_pred CceEEEEeeeehhhhhhHHHHHHhhh
Q 040815 257 DRKIILTGYAGGLVAGLVLGFNFSTG 282 (305)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (305)
....+++|+++|++.+++++++++.+
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHH
Confidence 45566777777776666655555444
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=86.91 E-value=0.11 Score=47.93 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=9.0
Q ss_pred hhCCCCCCEEecCCcc
Q 040815 135 IANLKGLQVLNLQYNN 150 (305)
Q Consensus 135 ~~~l~~L~~L~Ls~N~ 150 (305)
+..++.++.+.+..+.
T Consensus 358 ~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG 373 (482)
T ss_pred HhcCCCcchhhhhhhh
Confidence 3455566666665555
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.13 E-value=0.77 Score=23.81 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=7.0
Q ss_pred CCCCEEEccCccCC
Q 040815 46 PKLNVLILRSNIFY 59 (305)
Q Consensus 46 ~~L~~L~L~~n~l~ 59 (305)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 83
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=84.74 E-value=0.47 Score=26.83 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.4
Q ss_pred eeeehhhhhhHHH
Q 040815 264 GYAGGLVAGLVLG 276 (305)
Q Consensus 264 ~~~~~~~~~~~~~ 276 (305)
++++++++++++.
T Consensus 7 aIIv~V~vg~~ii 19 (38)
T PF02439_consen 7 AIIVAVVVGMAII 19 (38)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444433
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.75 E-value=0.76 Score=23.79 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=13.8
Q ss_pred CCccEEEccCCcCcccCCh
Q 040815 72 SKLRIIDLSNNRFSGNLPS 90 (305)
Q Consensus 72 ~~L~~L~L~~n~l~g~~p~ 90 (305)
+.|+.|+.++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35788888888888 7775
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=82.29 E-value=0.92 Score=33.51 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=4.0
Q ss_pred eeeehhhhhh
Q 040815 264 GYAGGLVAGL 273 (305)
Q Consensus 264 ~~~~~~~~~~ 273 (305)
+|++|+++++
T Consensus 68 ~Ii~gv~aGv 77 (122)
T PF01102_consen 68 GIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHH
T ss_pred ehhHHHHHHH
Confidence 3334444443
No 86
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=82.26 E-value=1.6 Score=24.77 Aligned_cols=28 Identities=7% Similarity=0.053 Sum_probs=13.9
Q ss_pred ehhhhhhHHHHHHhhhhhhhhHhhhhhh
Q 040815 267 GGLVAGLVLGFNFSTGIIGWILEKLGTQ 294 (305)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (305)
+++++++++++++......+|..+++|.
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4455555555555544444454444433
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=0.59 Score=37.74 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=51.6
Q ss_pred CCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc-CcccCChhhhhccchhh
Q 040815 22 SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR-FSGNLPSKSFLCWNAMK 100 (305)
Q Consensus 22 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~~l~~L~ 100 (305)
..++.+|-++..|..+--+.+..++.++.|.+.++.--+..--...-...++|+.|+++.|. |+ +---..+..+.+|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 45778888888887666666778888888888877532110000011245899999999875 33 22223344556666
Q ss_pred hhhhcc
Q 040815 101 IVNARR 106 (305)
Q Consensus 101 ~l~l~~ 106 (305)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 665443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.55 E-value=1.7 Score=22.83 Aligned_cols=14 Identities=50% Similarity=0.733 Sum_probs=8.9
Q ss_pred CCCCEEeCCCCcCC
Q 040815 163 TNLESLDLSNKKFA 176 (305)
Q Consensus 163 ~~L~~L~L~~N~l~ 176 (305)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666666666665
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=78.35 E-value=2.1 Score=39.45 Aligned_cols=85 Identities=21% Similarity=0.174 Sum_probs=43.0
Q ss_pred cccccEEEccCC-ccccccc----hhhhCCCCCCEEecCCcc-ccccCCcccc-CCCCCCEEeCCCCc-CCcc-Cccccc
Q 040815 114 PDILAGIILSNN-RFVGAIP----ASIANLKGLQVLNLQYNN-LQGLIPSSLG-NLTNLESLDLSNKK-FAGR-IPQQLV 184 (305)
Q Consensus 114 ~~~L~~L~ls~n-~l~~~~p----~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~-~p~~~~ 184 (305)
.+.|+.|+++++ ......+ .....+..|+.|++++.. ++...-..+. .+++|++|.+.++. +++. +-....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 556777777652 1111111 122344667777777666 4432222222 26677777766555 4432 222233
Q ss_pred cCCCCCEEeccCCc
Q 040815 185 ELTFLEFFNVSDNY 198 (305)
Q Consensus 185 ~l~~L~~L~l~~N~ 198 (305)
.++.|++|+++.+.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 45667777777553
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.76 E-value=1.2 Score=49.01 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=32.0
Q ss_pred eCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 169 DLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 169 ~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
||++|+|+...+..|..+++|+.|+|++|+|.|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999977777888899999999999999987654
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=76.65 E-value=3 Score=24.06 Aligned_cols=8 Identities=25% Similarity=0.181 Sum_probs=3.0
Q ss_pred EEEEeeee
Q 040815 260 IILTGYAG 267 (305)
Q Consensus 260 ~~~~~~~~ 267 (305)
.+..++++
T Consensus 12 aIa~~VvV 19 (40)
T PF08693_consen 12 AIAVGVVV 19 (40)
T ss_pred EEEEEEEe
Confidence 33333333
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=75.40 E-value=3.8 Score=31.39 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=10.7
Q ss_pred EEEEeeeehhhhhhHHHHH
Q 040815 260 IILTGYAGGLVAGLVLGFN 278 (305)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~ 278 (305)
.+++|+++|+.++++++++
T Consensus 49 nIVIGvVVGVGg~ill~il 67 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGIL 67 (154)
T ss_pred cEEEEEEecccHHHHHHHH
Confidence 4556767666555554433
No 93
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=73.43 E-value=5.8 Score=22.78 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=4.3
Q ss_pred hhhhhhHhh
Q 040815 282 GIIGWILEK 290 (305)
Q Consensus 282 ~~~~~~~~~ 290 (305)
..++|..++
T Consensus 29 iYRKw~aRk 37 (43)
T PF08114_consen 29 IYRKWQARK 37 (43)
T ss_pred HHHHHHHHH
Confidence 345554443
No 94
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=72.33 E-value=2.3 Score=30.10 Aligned_cols=16 Identities=25% Similarity=0.300 Sum_probs=8.2
Q ss_pred EEeeeehhhhhhHHHH
Q 040815 262 LTGYAGGLVAGLVLGF 277 (305)
Q Consensus 262 ~~~~~~~~~~~~~~~~ 277 (305)
..+.++|+++++++++
T Consensus 64 s~gaiagi~vg~~~~v 79 (96)
T PTZ00382 64 STGAIAGISVAVVAVV 79 (96)
T ss_pred ccccEEEEEeehhhHH
Confidence 3455556665544443
No 95
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=71.37 E-value=3.1 Score=31.35 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=13.8
Q ss_pred ehhhhhhHHHHHHhhhhhhhhHhhhhhhhh
Q 040815 267 GGLVAGLVLGFNFSTGIIGWILEKLGTQQK 296 (305)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (305)
.|+|+++|++..++++.....+.++++.+.
T Consensus 64 aGIVfgiVfimgvva~i~icvCmc~kn~rg 93 (155)
T PF10873_consen 64 AGIVFGIVFIMGVVAGIAICVCMCMKNSRG 93 (155)
T ss_pred eeeehhhHHHHHHHHHHHHHHhhhhhcCCC
Confidence 344444444444444444455555555533
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.17 E-value=3.8 Score=45.46 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=28.9
Q ss_pred ecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815 145 NLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 145 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778999999999999999876
No 97
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=67.87 E-value=2.1 Score=38.47 Aligned_cols=137 Identities=22% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEcc
Q 040815 44 TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILS 123 (305)
Q Consensus 44 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls 123 (305)
.+..|++|+.++..-.+..+...-.....+|++|-++.++--+..- |.. +....+.|+.+++.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~---ft~--------------l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG---FTM--------------LGRNCPHLERLDLE 354 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh---hhh--------------hhcCChhhhhhccc
Confidence 4667888888776542211111111345788888887765221111 111 01112334444444
Q ss_pred CCccc--cccchhhhCCCCCCEEecCCccccccC-----CccccCCCCCCEEeCCCCcCCc-cCccccccCCCCCEEecc
Q 040815 124 NNRFV--GAIPASIANLKGLQVLNLQYNNLQGLI-----PSSLGNLTNLESLDLSNKKFAG-RIPQQLVELTFLEFFNVS 195 (305)
Q Consensus 124 ~n~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~l~ 195 (305)
..... +.+...-.+++.|+++.|+++...... ...-..+..|+.+.|+++.... ..-..+..++.|+.+++-
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~ 434 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI 434 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence 43321 111111235667777777766543111 1112345667777777775432 222334556667776655
Q ss_pred CC
Q 040815 196 DN 197 (305)
Q Consensus 196 ~N 197 (305)
+.
T Consensus 435 ~~ 436 (483)
T KOG4341|consen 435 DC 436 (483)
T ss_pred ch
Confidence 44
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.72 E-value=14 Score=34.00 Aligned_cols=63 Identities=24% Similarity=0.091 Sum_probs=30.8
Q ss_pred CCcEEeCCCcccCCCcChhccCC---CCCCEEEccCccCCc-ccCCCCCCCCCCCccEEEccCCcCc
Q 040815 23 KLEFLGLGNYQISDTFPSWLGTL---PKLNVLILRSNIFYG-VIEEPRTGCGFSKLRIIDLSNNRFS 85 (305)
Q Consensus 23 ~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (305)
.+.+++|+.|.....+|..+..+ ..++.++.+.-.++- ...+++..+.-+.+++.+++.|..+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 45566666666655555433221 234555555444321 1112222244456666666666543
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.77 E-value=3.6 Score=38.36 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=19.0
Q ss_pred CCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 45 LPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 45 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
.+.+..+.|++|++..+..........|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555556666655443222212233456666666666
No 100
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=64.44 E-value=1.8 Score=33.13 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=14.4
Q ss_pred CceEEEEeeeehhhhhhHHHHHHh
Q 040815 257 DRKIILTGYAGGLVAGLVLGFNFS 280 (305)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~ 280 (305)
...-+++|+.++++++++++++++
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~ 73 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIF 73 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeE
Confidence 355666777766666655555443
No 101
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=60.86 E-value=5.9 Score=31.51 Aligned_cols=6 Identities=17% Similarity=0.562 Sum_probs=2.3
Q ss_pred EeccCC
Q 040815 192 FNVSDN 197 (305)
Q Consensus 192 L~l~~N 197 (305)
.|.+++
T Consensus 9 ~d~~g~ 14 (179)
T PF13908_consen 9 YDVMGQ 14 (179)
T ss_pred ecCCCC
Confidence 333333
No 102
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=59.10 E-value=3.8 Score=30.32 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=18.8
Q ss_pred EeeeehhhhhhHHHHHHhhhhhhhhHhhhhhhh
Q 040815 263 TGYAGGLVAGLVLGFNFSTGIIGWILEKLGTQQ 295 (305)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (305)
.+.+++++++++++++..+....|+.++++|+.
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 445677777777777766655555555554443
No 103
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.61 E-value=8.1 Score=30.30 Aligned_cols=43 Identities=19% Similarity=0.104 Sum_probs=18.0
Q ss_pred eEEEEeeeehhh-hhhHHHHHHhhhhhhhhHhhhhhhhhhhccc
Q 040815 259 KIILTGYAGGLV-AGLVLGFNFSTGIIGWILEKLGTQQKATRRR 301 (305)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (305)
..++.++.+|.+ .+++..++.+.+.+.|......++++++.++
T Consensus 136 ~P~l~pm~vgav~~~a~~~ll~y~~~r~~v~~f~~rR~~~~~~~ 179 (184)
T COG3216 136 GPVLKPMLVGAVPAGAIGGLLFYGLTRYSVTRFRERRRRSLAER 179 (184)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444443 3344344333344444444444444444333
No 104
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=54.27 E-value=6.4 Score=35.74 Aligned_cols=12 Identities=33% Similarity=0.578 Sum_probs=4.6
Q ss_pred EeeeehhhhhhH
Q 040815 263 TGYAGGLVAGLV 274 (305)
Q Consensus 263 ~~~~~~~~~~~~ 274 (305)
.++|+||.|++|
T Consensus 366 tgaIaGIsvavv 377 (397)
T PF03302_consen 366 TGAIAGISVAVV 377 (397)
T ss_pred ccceeeeeehhH
Confidence 333334433333
No 105
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=53.57 E-value=4.3 Score=26.05 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=0.0
Q ss_pred eeeehhhhh
Q 040815 264 GYAGGLVAG 272 (305)
Q Consensus 264 ~~~~~~~~~ 272 (305)
++++|.+++
T Consensus 13 avIaG~Vvg 21 (64)
T PF01034_consen 13 AVIAGGVVG 21 (64)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 333343333
No 106
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=52.46 E-value=13 Score=26.25 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=12.5
Q ss_pred HhhhhhhhhHhhhhhhhhhhcc
Q 040815 279 FSTGIIGWILEKLGTQQKATRR 300 (305)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~ 300 (305)
+.+....|+..+...+.++-.+
T Consensus 36 laaKC~~~~k~~~SY~H~rL~e 57 (102)
T PF15176_consen 36 LAAKCPVWYKYLASYRHHRLPE 57 (102)
T ss_pred HHHHhHHHHHHHhccccccCCc
Confidence 3445566766666666555444
No 107
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=52.44 E-value=46 Score=28.50 Aligned_cols=10 Identities=40% Similarity=0.820 Sum_probs=4.2
Q ss_pred EEeeeehhhh
Q 040815 262 LTGYAGGLVA 271 (305)
Q Consensus 262 ~~~~~~~~~~ 271 (305)
++++++|+++
T Consensus 216 v~g~~~G~~~ 225 (278)
T PF06697_consen 216 VVGVVGGVVL 225 (278)
T ss_pred EEEehHHHHH
Confidence 3343444443
No 108
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=50.86 E-value=12 Score=30.43 Aligned_cols=21 Identities=5% Similarity=-0.047 Sum_probs=8.8
Q ss_pred EEEEeeeehhhhhhHHHHHHh
Q 040815 260 IILTGYAGGLVAGLVLGFNFS 280 (305)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~ 280 (305)
+.+++.+++++++|++++++.
T Consensus 41 iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 41 IAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeecchhhhHHHHHHHHHHH
Confidence 333333334444444444444
No 109
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.38 E-value=9.8 Score=35.61 Aligned_cols=64 Identities=23% Similarity=0.144 Sum_probs=34.6
Q ss_pred CCCCCcEEeCCCcccCCCcC--hhccCCCCCCEEEccCc--cCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815 20 NCSKLEFLGLGNYQISDTFP--SWLGTLPKLNVLILRSN--IFYGVIEEPRTGCGFSKLRIIDLSNNRFS 85 (305)
Q Consensus 20 ~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (305)
+.+.+..+.|++|++-.... .--..-++|++|+|++| .+.......- .+...|+.|-|.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccc
Confidence 45666777777777653211 11123467778888877 3322111111 23345777777777765
No 110
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.63 E-value=12 Score=32.52 Aligned_cols=9 Identities=0% Similarity=-0.385 Sum_probs=3.5
Q ss_pred HHhhhhhhh
Q 040815 278 NFSTGIIGW 286 (305)
Q Consensus 278 ~~~~~~~~~ 286 (305)
+++.+++|.
T Consensus 275 IYLILRYRR 283 (299)
T PF02009_consen 275 IYLILRYRR 283 (299)
T ss_pred HHHHHHHHH
Confidence 333344443
No 111
>PF15050 SCIMP: SCIMP protein
Probab=47.20 E-value=7.1 Score=28.40 Aligned_cols=10 Identities=20% Similarity=0.305 Sum_probs=4.4
Q ss_pred hhhHhhhhhh
Q 040815 285 GWILEKLGTQ 294 (305)
Q Consensus 285 ~~~~~~~~~~ 294 (305)
+|..|..+++
T Consensus 32 R~~lRqGkkw 41 (133)
T PF15050_consen 32 RWQLRQGKKW 41 (133)
T ss_pred HHHHHccccc
Confidence 4544444433
No 112
>PF15069 FAM163: FAM163 family
Probab=46.83 E-value=23 Score=26.83 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=7.2
Q ss_pred hhhhhhHHHHHHhhhhhhhh
Q 040815 268 GLVAGLVLGFNFSTGIIGWI 287 (305)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~ 287 (305)
+.|+.+.+++++.+-+..+|
T Consensus 14 AtVILLcIIaVLCYCRLQYY 33 (143)
T PF15069_consen 14 ATVILLCIIAVLCYCRLQYY 33 (143)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 33333333333333333333
No 113
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.73 E-value=9.4 Score=24.70 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=3.0
Q ss_pred hhhhhHHH
Q 040815 269 LVAGLVLG 276 (305)
Q Consensus 269 ~~~~~~~~ 276 (305)
+++|++++
T Consensus 28 f~~G~llg 35 (68)
T PF06305_consen 28 FLLGALLG 35 (68)
T ss_pred HHHHHHHH
Confidence 33333333
No 114
>PTZ00370 STEVOR; Provisional
Probab=44.46 E-value=18 Score=30.94 Aligned_cols=19 Identities=11% Similarity=0.113 Sum_probs=11.0
Q ss_pred HHhhhhhhhhHhhhhhhhh
Q 040815 278 NFSTGIIGWILEKLGTQQK 296 (305)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~ 296 (305)
+++...+.|.+|+++.-|+
T Consensus 269 vvliilYiwlyrrRK~swk 287 (296)
T PTZ00370 269 VVLIILYIWLYRRRKNSWK 287 (296)
T ss_pred HHHHHHHHHHHHhhcchhH
Confidence 3444566777776655443
No 115
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=43.57 E-value=18 Score=30.85 Aligned_cols=18 Identities=6% Similarity=0.052 Sum_probs=10.6
Q ss_pred HHhhhhhhhhHhhhhhhh
Q 040815 278 NFSTGIIGWILEKLGTQQ 295 (305)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~ 295 (305)
+++...+.|.+|+++.-|
T Consensus 273 vvliiLYiWlyrrRK~sw 290 (295)
T TIGR01478 273 VVLIILYIWLYRRRKKSW 290 (295)
T ss_pred HHHHHHHHHHHHhhcccc
Confidence 344456677777665544
No 116
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=40.87 E-value=34 Score=30.10 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=5.6
Q ss_pred hhhhhHhhhhhh
Q 040815 283 IIGWILEKLGTQ 294 (305)
Q Consensus 283 ~~~~~~~~~~~~ 294 (305)
...|+.+.++++
T Consensus 304 ~g~~~~~~~~r~ 315 (354)
T PF05795_consen 304 FGSWFNRRRGRR 315 (354)
T ss_pred cchhhccccccc
Confidence 345555544443
No 117
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=40.78 E-value=9.1 Score=28.31 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=0.0
Q ss_pred ehhhhhhHHHHHHhh
Q 040815 267 GGLVAGLVLGFNFST 281 (305)
Q Consensus 267 ~~~~~~~~~~~~~~~ 281 (305)
+|++++.+++.++++
T Consensus 3 ag~a~~~~lgYciYF 17 (121)
T PF02064_consen 3 AGVAAAAFLGYCIYF 17 (121)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhhc
Confidence 344444555555544
No 118
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.88 E-value=23 Score=17.85 Aligned_cols=11 Identities=55% Similarity=0.637 Sum_probs=7.0
Q ss_pred CCCCEEeCCCC
Q 040815 163 TNLESLDLSNK 173 (305)
Q Consensus 163 ~~L~~L~L~~N 173 (305)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666666
No 119
>PF15179 Myc_target_1: Myc target protein 1
Probab=39.74 E-value=11 Score=29.75 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=8.8
Q ss_pred EEEeeeehhhhhhHHHHHH
Q 040815 261 ILTGYAGGLVAGLVLGFNF 279 (305)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~ 279 (305)
++++..+.++++++++.++
T Consensus 21 lIlaF~vSm~iGLviG~li 39 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALI 39 (197)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544433
No 120
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=36.98 E-value=11 Score=27.21 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhh
Q 040815 283 IIGWILEKLGTQ 294 (305)
Q Consensus 283 ~~~~~~~~~~~~ 294 (305)
...||++++...
T Consensus 42 iGCWYckRRSGY 53 (118)
T PF14991_consen 42 IGCWYCKRRSGY 53 (118)
T ss_dssp ------------
T ss_pred Hhheeeeecchh
Confidence 346676665433
No 121
>PF15179 Myc_target_1: Myc target protein 1
Probab=35.92 E-value=15 Score=29.05 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=12.7
Q ss_pred eEEEEeeeehhhhhhHHHHHHh
Q 040815 259 KIILTGYAGGLVAGLVLGFNFS 280 (305)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~ 280 (305)
..+-+.+++|++++.++.+++.
T Consensus 23 laF~vSm~iGLviG~li~~Llt 44 (197)
T PF15179_consen 23 LAFCVSMAIGLVIGALIWALLT 44 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777666555443
No 122
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=35.80 E-value=29 Score=24.13 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=9.5
Q ss_pred ehhhhhhHHHHHHhhhhhhh
Q 040815 267 GGLVAGLVLGFNFSTGIIGW 286 (305)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~ 286 (305)
+|+++.++++.++++.+.+|
T Consensus 49 GG~iLilIii~Lv~CC~~K~ 68 (98)
T PF07204_consen 49 GGLILILIIIALVCCCRAKH 68 (98)
T ss_pred chhhhHHHHHHHHHHhhhhh
Confidence 45555555444444444444
No 123
>PRK09459 pspG phage shock protein G; Reviewed
Probab=35.57 E-value=31 Score=22.95 Aligned_cols=16 Identities=6% Similarity=0.522 Sum_probs=8.9
Q ss_pred hhhhhHhhhhhhhhhh
Q 040815 283 IIGWILEKLGTQQKAT 298 (305)
Q Consensus 283 ~~~~~~~~~~~~~~~~ 298 (305)
...|+.|.+++.+.++
T Consensus 56 v~vW~~r~~~~~~~~~ 71 (76)
T PRK09459 56 VVVWVIRAIKAPKVPR 71 (76)
T ss_pred HHHHHHHHhhcccccc
Confidence 4567766665544333
No 124
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=32.95 E-value=14 Score=28.55 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=0.0
Q ss_pred EEeeeehhh
Q 040815 262 LTGYAGGLV 270 (305)
Q Consensus 262 ~~~~~~~~~ 270 (305)
++||++|++
T Consensus 131 LVGIIVGVL 139 (162)
T PF05808_consen 131 LVGIIVGVL 139 (162)
T ss_dssp ---------
T ss_pred eeeehhhHH
Confidence 344444443
No 125
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=32.03 E-value=28 Score=31.64 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=7.8
Q ss_pred EEEEeeeehhhhhhHHHHH
Q 040815 260 IILTGYAGGLVAGLVLGFN 278 (305)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~ 278 (305)
++.|+|++++||+-+|+|+
T Consensus 369 IaGIsvavvvvVgglvGfL 387 (397)
T PF03302_consen 369 IAGISVAVVVVVGGLVGFL 387 (397)
T ss_pred eeeeeehhHHHHHHHHHHH
Confidence 3333333334444444443
No 126
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=31.48 E-value=1.8e+02 Score=20.18 Aligned_cols=6 Identities=33% Similarity=1.032 Sum_probs=3.1
Q ss_pred hhhhHh
Q 040815 284 IGWILE 289 (305)
Q Consensus 284 ~~~~~~ 289 (305)
..|+.|
T Consensus 55 y~~fLk 60 (91)
T PF01708_consen 55 YTWFLK 60 (91)
T ss_pred HHHHHH
Confidence 455554
No 127
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.79 E-value=52 Score=21.46 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=7.5
Q ss_pred hhhhhHhhhhhhhhh
Q 040815 283 IIGWILEKLGTQQKA 297 (305)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (305)
...||+++...+++.
T Consensus 50 ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 50 LTNLYFKIKEDRRKA 64 (68)
T ss_pred HhHhhhhhhHhhhHh
Confidence 345665555444433
No 128
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.47 E-value=43 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHhhhhhhhh
Q 040815 269 LVAGLVLGFNFSTGIIGWI 287 (305)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~ 287 (305)
+++++++.+++++.+..|+
T Consensus 34 ILiaIvVliiiiivli~lc 52 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344443
No 129
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=30.20 E-value=39 Score=23.32 Aligned_cols=40 Identities=5% Similarity=-0.124 Sum_probs=15.4
Q ss_pred CceEEEEeeeehhhhhhHHHHHHhhhhhhhhHhhhhhhhhh
Q 040815 257 DRKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGTQQKA 297 (305)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (305)
.|.-+..+++ ++++++.++.+...+..+=....++.++++
T Consensus 33 ~ws~vv~v~i-~~lvaVg~~YL~y~~fLkDlIlv~KAkrqr 72 (91)
T PF01708_consen 33 PWSRVVEVAI-FTLVAVGCLYLAYTWFLKDLILVLKAKRQR 72 (91)
T ss_pred cceeEeeeee-hHHHHHHHHHHHHHHHHHHHhheeeeccCC
Confidence 4444433333 233333333333334444444444444433
No 130
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=30.12 E-value=59 Score=26.15 Aligned_cols=8 Identities=25% Similarity=0.272 Sum_probs=3.2
Q ss_pred eEEEEeee
Q 040815 259 KIILTGYA 266 (305)
Q Consensus 259 ~~~~~~~~ 266 (305)
.++-+.|.
T Consensus 100 ~~iTITvS 107 (205)
T PF15298_consen 100 QIITITVS 107 (205)
T ss_pred EEEEEeee
Confidence 34444333
No 131
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=29.44 E-value=13 Score=28.45 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=8.0
Q ss_pred eeehhhhhhHHHHHHhh
Q 040815 265 YAGGLVAGLVLGFNFST 281 (305)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ 281 (305)
+++|++++.+++.++++
T Consensus 11 ~~ag~a~~~flgYciYF 27 (148)
T TIGR00985 11 IAAGIAAAAFLGYAIYF 27 (148)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444555555444
No 132
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=29.39 E-value=66 Score=24.08 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=17.2
Q ss_pred hHHHHHHhhhhhhhhHhhhhhhhhhhcccCCC
Q 040815 273 LVLGFNFSTGIIGWILEKLGTQQKATRRRGSR 304 (305)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (305)
+++..++....-.|......+++.++.++.++
T Consensus 96 ~iiST~lv~~vtg~~~~~l~~~~~~~~~~~~~ 127 (128)
T COG1380 96 IIISTLLVLLVTGWVVQLLIRWQSKRHGRKKE 127 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 33344444455566666666666555555444
No 133
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=29.26 E-value=36 Score=33.53 Aligned_cols=8 Identities=0% Similarity=-0.355 Sum_probs=3.7
Q ss_pred hhhHhhhh
Q 040815 285 GWILEKLG 292 (305)
Q Consensus 285 ~~~~~~~~ 292 (305)
.|||++.+
T Consensus 294 l~yCrrkc 301 (807)
T PF10577_consen 294 LCYCRRKC 301 (807)
T ss_pred HHhhhccc
Confidence 45554433
No 134
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=29.03 E-value=53 Score=19.70 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=5.5
Q ss_pred HHHHhhhhhhhhH
Q 040815 276 GFNFSTGIIGWIL 288 (305)
Q Consensus 276 ~~~~~~~~~~~~~ 288 (305)
+++++.+...|..
T Consensus 18 ~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 18 FFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444544
No 135
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=28.33 E-value=21 Score=31.12 Aligned_cols=12 Identities=17% Similarity=-0.025 Sum_probs=5.0
Q ss_pred EeeeehhhhhhH
Q 040815 263 TGYAGGLVAGLV 274 (305)
Q Consensus 263 ~~~~~~~~~~~~ 274 (305)
+-|++|++++.+
T Consensus 273 vPIaVG~~La~l 284 (306)
T PF01299_consen 273 VPIAVGAALAGL 284 (306)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 136
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=27.88 E-value=52 Score=19.27 Aligned_cols=8 Identities=25% Similarity=0.646 Sum_probs=3.1
Q ss_pred hhhhhHhh
Q 040815 283 IIGWILEK 290 (305)
Q Consensus 283 ~~~~~~~~ 290 (305)
..+++.++
T Consensus 29 ~~~~F~~k 36 (42)
T PF11346_consen 29 FIRYFIRK 36 (42)
T ss_pred HHHHHHHH
Confidence 33343333
No 137
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=27.50 E-value=96 Score=26.75 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=8.5
Q ss_pred CCCCcEEeCCCcccC
Q 040815 21 CSKLEFLGLGNYQIS 35 (305)
Q Consensus 21 l~~L~~L~L~~n~l~ 35 (305)
|+.+=..|..+.+..
T Consensus 15 C~~lC~yd~~~~qW~ 29 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWS 29 (281)
T ss_pred CCEEEEEECCCCEee
Confidence 555666666555544
No 138
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=26.34 E-value=87 Score=30.16 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=7.7
Q ss_pred CceEEEEeeeehhhhh
Q 040815 257 DRKIILTGYAGGLVAG 272 (305)
Q Consensus 257 ~~~~~~~~~~~~~~~~ 272 (305)
...|+++|+++.++++
T Consensus 267 ~NlWII~gVlvPv~vV 282 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVV 282 (684)
T ss_pred CCeEEEehHhHHHHHH
Confidence 4456555554443333
No 139
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=25.79 E-value=67 Score=28.80 Aligned_cols=9 Identities=0% Similarity=-0.333 Sum_probs=3.5
Q ss_pred hhhhhhhhH
Q 040815 280 STGIIGWIL 288 (305)
Q Consensus 280 ~~~~~~~~~ 288 (305)
++|..+|++
T Consensus 316 ~~~~~~~~~ 324 (361)
T PF12259_consen 316 LAWLYRTFR 324 (361)
T ss_pred HHhheeehH
Confidence 334444433
No 140
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=25.57 E-value=70 Score=24.32 Aligned_cols=18 Identities=17% Similarity=0.085 Sum_probs=8.7
Q ss_pred EEEEeeeehhhhhhHHHH
Q 040815 260 IILTGYAGGLVAGLVLGF 277 (305)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~ 277 (305)
.++.||++|+|+.+.++.
T Consensus 61 tAIaGIVfgiVfimgvva 78 (155)
T PF10873_consen 61 TAIAGIVFGIVFIMGVVA 78 (155)
T ss_pred ceeeeeehhhHHHHHHHH
Confidence 344455555554444433
No 141
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.00 E-value=83 Score=21.07 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=6.3
Q ss_pred hhhhhHhhhhhhh
Q 040815 283 IIGWILEKLGTQQ 295 (305)
Q Consensus 283 ~~~~~~~~~~~~~ 295 (305)
...|...++..++
T Consensus 18 ap~WL~lHY~sk~ 30 (75)
T PF06667_consen 18 APIWLILHYRSKW 30 (75)
T ss_pred HHHHHHHHHHHhc
Confidence 3455555554443
No 142
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=24.03 E-value=86 Score=20.27 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=5.9
Q ss_pred ehhhhhhHHHHHH
Q 040815 267 GGLVAGLVLGFNF 279 (305)
Q Consensus 267 ~~~~~~~~~~~~~ 279 (305)
+++++++++++++
T Consensus 5 lali~G~~~Gff~ 17 (64)
T PF03672_consen 5 LALIVGAVIGFFI 17 (64)
T ss_pred HHHHHHHHHHHHH
Confidence 3444454444433
No 143
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=24.02 E-value=49 Score=23.83 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=6.8
Q ss_pred CceEEEEeeeehhhhh
Q 040815 257 DRKIILTGYAGGLVAG 272 (305)
Q Consensus 257 ~~~~~~~~~~~~~~~~ 272 (305)
.+..+.+|.++++++.
T Consensus 59 ~~~lffvglii~LivS 74 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVS 74 (128)
T ss_pred ceeehHHHHHHHHHHH
Confidence 3444444444443333
No 144
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=23.04 E-value=67 Score=23.81 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=5.2
Q ss_pred hhhhHhhhhhh
Q 040815 284 IGWILEKLGTQ 294 (305)
Q Consensus 284 ~~~~~~~~~~~ 294 (305)
..|..+..+|+
T Consensus 100 lcW~~~~rkK~ 110 (129)
T PF15099_consen 100 LCWKPIIRKKK 110 (129)
T ss_pred heehhhhHhHH
Confidence 55655444333
No 145
>PRK11677 hypothetical protein; Provisional
Probab=22.73 E-value=28 Score=26.26 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=11.4
Q ss_pred eehhhhhhHHHHHHhhh
Q 040815 266 AGGLVAGLVLGFNFSTG 282 (305)
Q Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (305)
++++++|+++++++..+
T Consensus 7 ~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45677777777766664
No 146
>PF14851 FAM176: FAM176 family
Probab=22.01 E-value=45 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHhhhhhhh
Q 040815 269 LVAGLVLGFNFSTGIIGW 286 (305)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~ 286 (305)
+.+|+++.++++..+..+
T Consensus 30 VC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 30 VCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 333344333333333333
No 147
>PRK09458 pspB phage shock protein B; Provisional
Probab=21.81 E-value=89 Score=20.88 Aligned_cols=15 Identities=7% Similarity=0.178 Sum_probs=7.6
Q ss_pred hhhhhhHhhhhhhhh
Q 040815 282 GIIGWILEKLGTQQK 296 (305)
Q Consensus 282 ~~~~~~~~~~~~~~~ 296 (305)
....|..-++..+++
T Consensus 17 VaPiWL~LHY~sk~~ 31 (75)
T PRK09458 17 VAPIWLWLHYRSKRQ 31 (75)
T ss_pred HHHHHHHHhhccccc
Confidence 345665555544433
No 148
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.62 E-value=1e+02 Score=20.64 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=5.6
Q ss_pred hhhhhHhhhhhh
Q 040815 283 IIGWILEKLGTQ 294 (305)
Q Consensus 283 ~~~~~~~~~~~~ 294 (305)
...|...++..+
T Consensus 18 ap~wl~lHY~~k 29 (75)
T TIGR02976 18 APLWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHhh
Confidence 345554444433
No 149
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=21.04 E-value=1e+02 Score=18.45 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=9.9
Q ss_pred hhhhHHHHHHhhhhhhhhHh
Q 040815 270 VAGLVLGFNFSTGIIGWILE 289 (305)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~ 289 (305)
+.+.++++++....+.|.+|
T Consensus 25 ig~avL~v~V~i~v~kwiRr 44 (46)
T PF10389_consen 25 IGGAVLGVIVGIAVYKWIRR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444455566554
Done!