Query 040815
Match_columns 305
No_of_seqs 378 out of 3073
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 19:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.3E-36 1.5E-40 291.2 19.4 231 2-236 446-752 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-34 9.4E-39 250.3 13.7 225 2-232 80-312 (313)
3 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-31 3.7E-36 262.8 14.0 220 2-228 270-565 (844)
4 3zyi_A Leucine-rich repeat-con 100.0 8.4E-31 2.9E-35 239.5 18.8 223 1-228 78-308 (452)
5 3zyj_A Leucine-rich repeat-con 100.0 1E-30 3.5E-35 238.1 18.8 223 1-228 67-297 (440)
6 3rgz_A Protein brassinosteroid 100.0 4.8E-30 1.6E-34 248.8 18.0 220 1-223 421-717 (768)
7 1ogq_A PGIP-2, polygalacturona 100.0 2E-30 7E-35 225.8 12.7 218 1-223 53-281 (313)
8 3v47_A TOLL-like receptor 5B a 100.0 3.2E-29 1.1E-33 228.9 18.1 115 114-228 298-413 (455)
9 4g8a_A TOLL-like receptor 4; l 100.0 2.6E-29 9.1E-34 238.0 17.6 111 118-228 472-585 (635)
10 1ozn_A Reticulon 4 receptor; N 100.0 4.7E-29 1.6E-33 214.2 17.1 221 2-228 15-243 (285)
11 2o6q_A Variable lymphocyte rec 100.0 1.5E-27 5.1E-32 203.4 21.4 203 1-227 19-222 (270)
12 4fcg_A Uncharacterized protein 100.0 8.3E-29 2.8E-33 217.0 13.6 200 1-206 84-296 (328)
13 2id5_A Lingo-1, leucine rich r 100.0 2.3E-28 7.8E-33 224.7 16.8 227 1-228 59-338 (477)
14 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.8E-33 214.0 13.8 224 1-228 31-266 (306)
15 2z80_A TOLL-like receptor 2, v 100.0 2E-29 6.9E-34 223.1 7.1 223 1-227 55-318 (353)
16 2z62_A TOLL-like receptor 4, v 100.0 1.3E-27 4.5E-32 204.3 16.5 205 2-228 32-242 (276)
17 3o6n_A APL1; leucine-rich repe 100.0 9E-28 3.1E-32 215.3 16.1 219 1-226 72-355 (390)
18 3oja_B Anopheles plasmodium-re 100.0 9.5E-28 3.2E-32 226.5 16.2 219 1-226 78-361 (597)
19 3t6q_A CD180 antigen; protein- 100.0 7.1E-28 2.4E-32 227.7 14.8 227 1-228 304-565 (606)
20 1p9a_G Platelet glycoprotein I 100.0 5.8E-27 2E-31 201.8 19.1 201 1-228 13-213 (290)
21 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-27 3.9E-32 205.6 14.1 223 1-226 35-264 (285)
22 3v47_A TOLL-like receptor 5B a 99.9 4.5E-27 1.5E-31 214.7 18.3 107 116-222 276-383 (455)
23 3zyi_A Leucine-rich repeat-con 99.9 5.4E-27 1.9E-31 214.2 18.6 202 1-204 102-307 (452)
24 3zyj_A Leucine-rich repeat-con 99.9 5.9E-27 2E-31 213.3 18.2 202 1-204 91-296 (440)
25 2ft3_A Biglycan; proteoglycan, 99.9 8.7E-27 3E-31 204.4 17.5 195 1-202 57-279 (332)
26 1xku_A Decorin; proteoglycan, 99.9 3.2E-26 1.1E-30 200.6 20.3 212 1-222 55-275 (330)
27 3m19_A Variable lymphocyte rec 99.9 1.4E-26 4.7E-31 195.3 16.8 210 1-235 17-232 (251)
28 4fcg_A Uncharacterized protein 99.9 5.1E-27 1.7E-31 205.6 14.6 196 1-200 107-314 (328)
29 1ziw_A TOLL-like receptor 3; i 99.9 6.5E-27 2.2E-31 224.0 16.3 225 1-228 384-627 (680)
30 2o6q_A Variable lymphocyte rec 99.9 6.9E-26 2.3E-30 193.1 20.2 184 1-205 40-223 (270)
31 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-27 2.1E-31 221.3 14.7 221 2-228 332-563 (606)
32 4eco_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 217.2 18.4 216 1-225 356-602 (636)
33 1xku_A Decorin; proteoglycan, 99.9 5.8E-26 2E-30 199.0 18.2 218 1-224 79-307 (330)
34 1wwl_A Monocyte differentiatio 99.9 1.7E-27 5.8E-32 207.2 8.0 214 2-223 67-309 (312)
35 2id5_A Lingo-1, leucine rich r 99.9 3.5E-27 1.2E-31 216.8 10.5 224 2-228 108-361 (477)
36 2z66_A Variable lymphocyte rec 99.9 8.8E-27 3E-31 202.0 11.6 200 1-204 55-265 (306)
37 4eco_A Uncharacterized protein 99.9 8.7E-27 3E-31 221.4 12.3 215 2-222 85-414 (636)
38 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.4E-31 212.9 13.0 211 1-227 37-254 (487)
39 3o6n_A APL1; leucine-rich repe 99.9 6.8E-26 2.3E-30 203.0 14.7 216 1-221 48-306 (390)
40 1wwl_A Monocyte differentiatio 99.9 9.7E-27 3.3E-31 202.4 8.9 194 1-202 98-311 (312)
41 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-26 9.8E-31 199.9 11.7 210 1-226 37-253 (317)
42 3rfs_A Internalin B, repeat mo 99.9 9.5E-25 3.2E-29 186.2 20.0 179 2-205 45-223 (272)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-25 9.8E-30 208.2 18.2 80 1-85 55-134 (562)
44 4ecn_A Leucine-rich repeat pro 99.9 1.3E-25 4.6E-30 218.2 14.3 215 2-222 327-656 (876)
45 3t6q_A CD180 antigen; protein- 99.9 3.8E-25 1.3E-29 209.0 16.9 218 1-222 36-337 (606)
46 3oja_B Anopheles plasmodium-re 99.9 4.2E-25 1.4E-29 208.5 16.6 218 1-222 54-336 (597)
47 1ziw_A TOLL-like receptor 3; i 99.9 9.9E-25 3.4E-29 208.8 18.8 202 1-205 408-627 (680)
48 4glp_A Monocyte differentiatio 99.9 3.1E-25 1.1E-29 192.7 13.8 199 1-223 94-307 (310)
49 2xwt_C Thyrotropin receptor; s 99.9 2.2E-25 7.4E-30 186.5 11.8 197 1-220 34-236 (239)
50 2z80_A TOLL-like receptor 2, v 99.9 1.2E-25 4.2E-30 198.7 10.6 201 1-205 79-319 (353)
51 1p9a_G Platelet glycoprotein I 99.9 2.5E-24 8.7E-29 185.2 18.5 178 1-203 34-211 (290)
52 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-24 3.9E-29 205.7 16.8 200 1-205 353-563 (606)
53 4ecn_A Leucine-rich repeat pro 99.9 2.8E-24 9.5E-29 209.0 19.4 216 2-224 599-841 (876)
54 2z62_A TOLL-like receptor 4, v 99.9 2.4E-24 8.1E-29 184.0 16.8 184 1-206 55-243 (276)
55 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-25 1.8E-29 204.4 13.5 216 1-222 24-411 (520)
56 2ft3_A Biglycan; proteoglycan, 99.9 1.8E-24 6E-29 189.7 16.0 213 1-223 36-277 (332)
57 2z63_A TOLL-like receptor 4, v 99.9 9.2E-25 3.1E-29 204.7 14.8 221 1-228 307-536 (570)
58 3rfs_A Internalin B, repeat mo 99.9 3.1E-24 1.1E-28 183.0 16.1 197 5-228 26-223 (272)
59 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-24 1.1E-28 210.1 17.8 108 115-222 266-374 (844)
60 3m19_A Variable lymphocyte rec 99.9 1.2E-23 4E-28 177.3 17.5 157 1-178 38-194 (251)
61 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-24 9.3E-29 200.8 14.3 103 1-105 53-156 (549)
62 2z7x_B TOLL-like receptor 1, v 99.9 7.8E-24 2.7E-28 196.5 15.2 217 1-228 250-486 (520)
63 2o6s_A Variable lymphocyte rec 99.9 6.9E-23 2.4E-27 167.6 16.4 175 1-206 10-184 (208)
64 4fmz_A Internalin; leucine ric 99.9 1.1E-22 3.6E-27 179.3 17.4 206 1-222 113-323 (347)
65 3o53_A Protein LRIM1, AGAP0063 99.9 3E-24 1E-28 187.2 7.0 209 3-223 15-227 (317)
66 1h6u_A Internalin H; cell adhe 99.9 9.7E-23 3.3E-27 176.8 16.3 184 1-201 44-231 (308)
67 2z63_A TOLL-like receptor 4, v 99.9 2.2E-23 7.7E-28 195.3 13.2 168 1-172 31-209 (570)
68 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-23 1E-27 194.5 13.1 200 1-227 279-514 (562)
69 3oja_A Leucine-rich immune mol 99.9 9.2E-24 3.2E-28 194.4 8.4 198 14-223 22-227 (487)
70 2xot_A Amphoterin-induced prot 99.9 1.1E-22 3.7E-27 180.4 14.2 179 1-203 21-205 (361)
71 2v70_A SLIT-2, SLIT homolog 2 99.9 6.8E-23 2.3E-27 169.2 12.0 156 25-204 14-170 (220)
72 3bz5_A Internalin-J, INLJ; leu 99.9 7.5E-22 2.6E-26 180.2 19.5 180 1-203 45-249 (457)
73 4glp_A Monocyte differentiatio 99.9 3.7E-23 1.3E-27 179.6 9.9 177 1-201 120-308 (310)
74 2z81_A CD282 antigen, TOLL-lik 99.9 5.8E-23 2E-27 191.8 11.9 193 3-202 10-211 (549)
75 1o6v_A Internalin A; bacterial 99.9 4.1E-22 1.4E-26 182.5 16.1 206 1-224 180-389 (466)
76 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-21 4.8E-26 178.4 19.5 203 1-222 67-298 (457)
77 4fmz_A Internalin; leucine ric 99.9 5E-22 1.7E-26 174.9 15.5 207 1-222 135-345 (347)
78 1o6v_A Internalin A; bacterial 99.9 8.1E-22 2.8E-26 180.6 17.1 203 1-221 71-320 (466)
79 2v9t_B SLIT homolog 2 protein 99.9 8.3E-22 2.9E-26 162.7 15.2 154 26-203 15-168 (220)
80 4g8a_A TOLL-like receptor 4; l 99.9 6.4E-22 2.2E-26 187.3 15.8 178 4-205 37-219 (635)
81 3e6j_A Variable lymphocyte rec 99.9 2.9E-21 9.9E-26 160.4 16.6 156 24-204 21-176 (229)
82 2o6s_A Variable lymphocyte rec 99.9 6.6E-22 2.3E-26 161.8 12.0 160 1-188 31-190 (208)
83 2xot_A Amphoterin-induced prot 99.9 7.1E-22 2.4E-26 175.1 12.8 180 24-227 20-206 (361)
84 2v9t_B SLIT homolog 2 protein 99.9 4.8E-21 1.6E-25 158.1 15.7 153 1-177 14-166 (220)
85 1h6t_A Internalin B; cell adhe 99.9 7.7E-21 2.6E-25 163.5 17.2 166 1-201 49-214 (291)
86 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.9E-26 162.3 12.8 171 1-198 58-237 (239)
87 3cvr_A Invasion plasmid antige 99.9 2.3E-21 7.9E-26 180.6 14.4 178 1-205 62-248 (571)
88 4ay9_X Follicle-stimulating ho 99.9 8.6E-22 2.9E-26 173.9 10.9 216 1-224 33-259 (350)
89 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.4E-26 169.2 11.7 201 6-224 27-231 (308)
90 2v70_A SLIT-2, SLIT homolog 2 99.9 4.5E-21 1.5E-25 158.3 13.7 158 48-228 13-171 (220)
91 1jl5_A Outer protein YOPM; leu 99.9 5.4E-22 1.8E-26 181.0 8.3 181 1-201 14-209 (454)
92 2ca6_A RAN GTPase-activating p 99.9 1.3E-22 4.4E-27 181.5 3.4 223 1-225 35-318 (386)
93 2ca6_A RAN GTPase-activating p 99.8 9.6E-23 3.3E-27 182.3 2.1 204 1-204 63-320 (386)
94 3goz_A Leucine-rich repeat-con 99.8 1.2E-22 4.1E-27 180.2 2.5 58 3-60 3-65 (362)
95 3goz_A Leucine-rich repeat-con 99.8 2.3E-22 7.8E-27 178.4 3.6 223 1-224 25-298 (362)
96 2ast_B S-phase kinase-associat 99.8 1.4E-21 4.7E-26 171.3 8.0 194 1-197 73-282 (336)
97 1m9s_A Internalin B; cell inva 99.8 4.5E-20 1.5E-24 173.5 17.0 166 2-202 47-212 (605)
98 1jl5_A Outer protein YOPM; leu 99.8 9.7E-20 3.3E-24 166.1 18.7 200 1-224 134-371 (454)
99 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.4E-26 170.5 6.7 211 1-220 50-282 (336)
100 1w8a_A SLIT protein; signaling 99.8 2.9E-20 1E-24 150.1 12.9 130 25-178 11-141 (192)
101 3e6j_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 150.1 16.3 156 47-227 20-176 (229)
102 1h6t_A Internalin B; cell adhe 99.8 5.1E-20 1.7E-24 158.4 13.5 184 5-224 31-214 (291)
103 1xeu_A Internalin C; cellular 99.8 4.8E-20 1.7E-24 156.2 12.4 164 3-202 24-187 (263)
104 3g06_A SSPH2 (leucine-rich rep 99.8 2.4E-19 8.3E-24 168.8 17.5 75 139-222 221-296 (622)
105 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.9E-24 169.9 15.7 120 72-205 181-302 (622)
106 4ay9_X Follicle-stimulating ho 99.8 8.9E-20 3.1E-24 160.9 12.8 212 1-221 12-234 (350)
107 4ezg_A Putative uncharacterize 99.8 3.1E-19 1.1E-23 144.6 15.0 154 19-201 41-195 (197)
108 1w8a_A SLIT protein; signaling 99.8 6.8E-20 2.3E-24 147.9 10.4 155 49-227 11-166 (192)
109 1m9s_A Internalin B; cell inva 99.8 1.7E-19 5.7E-24 169.7 12.1 183 4-222 27-209 (605)
110 1dce_A Protein (RAB geranylger 99.8 7.8E-22 2.7E-26 184.3 -4.3 180 2-206 353-552 (567)
111 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-20 8.6E-25 170.1 3.1 60 1-60 145-213 (461)
112 1z7x_W Ribonuclease inhibitor; 99.8 7.2E-21 2.4E-25 173.8 -3.5 200 1-201 116-355 (461)
113 1xeu_A Internalin C; cellular 99.8 4.8E-18 1.6E-22 143.9 14.0 144 1-178 44-187 (263)
114 2wfh_A SLIT homolog 2 protein 99.8 2.6E-18 9E-23 138.7 11.7 132 74-228 12-144 (193)
115 3cvr_A Invasion plasmid antige 99.8 1.6E-18 5.6E-23 161.4 11.8 163 1-187 83-254 (571)
116 2ell_A Acidic leucine-rich nuc 99.8 4.4E-18 1.5E-22 134.1 11.9 134 20-200 22-160 (168)
117 4b8c_D Glucose-repressible alc 99.7 4.3E-19 1.5E-23 170.6 5.3 178 2-206 177-360 (727)
118 4ezg_A Putative uncharacterize 99.7 4.5E-18 1.5E-22 137.8 10.3 152 43-222 41-193 (197)
119 2wfh_A SLIT homolog 2 protein 99.7 5.8E-18 2E-22 136.7 10.8 131 49-204 13-143 (193)
120 2je0_A Acidic leucine-rich nuc 99.7 8E-18 2.7E-22 130.0 10.4 128 21-195 16-148 (149)
121 2ell_A Acidic leucine-rich nuc 99.7 3.3E-18 1.1E-22 134.9 8.4 130 1-176 27-160 (168)
122 2o6r_A Variable lymphocyte rec 99.7 7.5E-17 2.6E-21 128.2 14.4 133 24-204 9-141 (177)
123 2o6r_A Variable lymphocyte rec 99.7 4.9E-17 1.7E-21 129.3 13.2 132 74-227 9-141 (177)
124 2je0_A Acidic leucine-rich nuc 99.7 1.3E-17 4.4E-22 128.8 8.6 81 1-85 20-101 (149)
125 1dce_A Protein (RAB geranylger 99.7 4E-20 1.4E-24 172.8 -7.9 185 19-223 346-546 (567)
126 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.1E-22 160.6 8.1 154 3-181 196-359 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.7 1.6E-16 5.3E-21 126.3 10.4 68 17-91 14-82 (176)
128 1ds9_A Outer arm dynein; leuci 99.7 1.2E-18 4E-23 141.4 -4.5 155 18-200 14-185 (198)
129 3g39_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 122.5 10.9 111 73-205 10-120 (170)
130 3sb4_A Hypothetical leucine ri 99.6 8.3E-16 2.8E-20 134.3 11.7 197 1-202 52-312 (329)
131 3sb4_A Hypothetical leucine ri 99.6 3.2E-16 1.1E-20 137.0 8.9 194 21-221 48-308 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.6 4.5E-16 1.5E-20 123.6 8.6 134 41-200 14-153 (176)
133 2r9u_A Variable lymphocyte rec 99.6 1.9E-15 6.5E-20 119.8 10.9 110 74-205 14-123 (174)
134 1ds9_A Outer arm dynein; leuci 99.6 4.2E-18 1.4E-22 138.0 -6.4 148 2-177 22-186 (198)
135 3g39_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 117.7 10.2 108 117-227 11-119 (170)
136 2r9u_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 115.7 10.2 108 117-227 14-122 (174)
137 3ogk_B Coronatine-insensitive 99.6 9.1E-17 3.1E-21 151.1 -3.7 132 71-202 377-528 (592)
138 2ifg_A High affinity nerve gro 99.5 4.8E-14 1.7E-18 123.9 9.9 106 120-227 13-120 (347)
139 3ogk_B Coronatine-insensitive 99.5 1.8E-15 6.3E-20 142.2 0.5 36 70-105 291-326 (592)
140 2ifg_A High affinity nerve gro 99.5 8.8E-14 3E-18 122.2 9.0 108 75-204 11-120 (347)
141 3un9_A NLR family member X1; l 99.5 2.2E-15 7.4E-20 133.7 -1.3 166 21-201 71-253 (372)
142 3un9_A NLR family member X1; l 99.4 2.7E-15 9.1E-20 133.1 -2.7 185 1-200 75-283 (372)
143 2p1m_B Transport inhibitor res 99.4 2E-15 7E-20 141.8 -4.4 85 114-199 431-518 (594)
144 4fdw_A Leucine rich hypothetic 99.4 3E-12 1E-16 114.6 15.2 205 2-220 139-355 (401)
145 4fdw_A Leucine rich hypothetic 99.4 6.7E-12 2.3E-16 112.3 15.5 179 10-200 124-312 (401)
146 2p1m_B Transport inhibitor res 99.4 1.4E-13 4.7E-18 129.3 2.1 191 1-194 108-345 (594)
147 2ra8_A Uncharacterized protein 99.0 1.2E-10 4.1E-15 102.6 4.6 162 17-200 134-320 (362)
148 4fs7_A Uncharacterized protein 98.7 1E-07 3.4E-12 85.0 13.0 62 134-197 292-353 (394)
149 1io0_A Tropomodulin; LRR prote 98.7 6.1E-09 2.1E-13 82.9 4.2 66 135-200 89-164 (185)
150 3rw6_A Nuclear RNA export fact 98.7 4.1E-09 1.4E-13 88.4 2.7 83 19-103 167-257 (267)
151 3rw6_A Nuclear RNA export fact 98.7 2.9E-08 1E-12 83.2 6.5 82 120-204 148-237 (267)
152 2ra8_A Uncharacterized protein 98.7 1.9E-08 6.5E-13 88.5 5.3 168 14-198 164-341 (362)
153 1io0_A Tropomodulin; LRR prote 98.6 3.7E-09 1.3E-13 84.2 -0.2 62 115-176 93-164 (185)
154 4gt6_A Cell surface protein; l 98.5 1.9E-06 6.5E-11 76.6 14.0 101 115-220 265-367 (394)
155 4fs7_A Uncharacterized protein 98.2 6.3E-06 2.2E-10 73.3 10.3 151 15-173 64-218 (394)
156 3e4g_A ATP synthase subunit S, 98.1 9.9E-07 3.4E-11 68.9 2.2 84 115-198 61-150 (176)
157 4h09_A Hypothetical leucine ri 98.1 4.8E-05 1.6E-09 67.0 13.0 154 17-196 189-342 (379)
158 4gt6_A Cell surface protein; l 98.1 2.4E-05 8.2E-10 69.5 11.0 150 21-199 241-390 (394)
159 4h09_A Hypothetical leucine ri 97.9 0.00016 5.5E-09 63.7 13.2 160 13-197 149-320 (379)
160 3e4g_A ATP synthase subunit S, 97.8 4.5E-06 1.5E-10 65.1 0.7 83 22-107 61-149 (176)
161 3rfe_A Platelet glycoprotein I 97.6 0.00015 5E-09 53.8 6.9 58 143-202 12-70 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 8.3E-05 2.8E-09 59.1 5.2 85 115-199 70-169 (197)
163 3rfe_A Platelet glycoprotein I 97.3 0.00041 1.4E-08 51.3 6.2 56 26-85 12-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00035 1.2E-08 55.4 3.9 84 114-197 40-136 (197)
165 2ks1_B Epidermal growth factor 91.0 0.1 3.5E-06 30.0 1.7 11 265-275 13-23 (44)
166 2l2t_A Receptor tyrosine-prote 91.0 0.072 2.5E-06 30.6 1.0 10 266-275 13-22 (44)
167 2ks1_B Epidermal growth factor 79.8 1.2 4.1E-05 25.5 2.2 18 260-277 12-29 (44)
168 2l2t_A Receptor tyrosine-prote 76.4 1.7 5.7E-05 24.9 2.1 16 261-276 12-27 (44)
169 2k1k_A Ephrin type-A receptor 69.2 1.7 5.8E-05 24.0 1.0 11 266-276 13-23 (38)
170 2lz0_A Uncharacterized protein 68.9 6.1 0.00021 27.0 4.1 48 8-56 6-53 (100)
171 2knc_A Integrin alpha-IIB; tra 53.8 9.5 0.00032 22.8 2.4 11 285-295 33-43 (54)
172 2lz0_A Uncharacterized protein 53.1 32 0.0011 23.3 5.4 42 130-172 11-52 (100)
173 2l8s_A Integrin alpha-1; trans 39.2 14 0.00048 22.0 1.5 8 285-292 30-37 (54)
174 2l9u_A Receptor tyrosine-prote 37.4 17 0.00058 19.2 1.5 13 268-280 11-23 (40)
175 2k1a_A Integrin alpha-IIB; sin 20.1 40 0.0014 18.9 1.1 6 286-291 32-37 (42)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-36 Score=291.21 Aligned_cols=231 Identities=35% Similarity=0.531 Sum_probs=172.0
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|+|++|.+++.+|..+ +.+++|++|++++
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSN 523 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCS
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH--hcCCCCCEEECCC
Confidence 44555555555555555555555555555555555555555555555555555555555544444 4555555555555
Q ss_pred CcCcccCChhhhhccchhhhhhhccccc----------------------------------------------------
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMT---------------------------------------------------- 109 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~---------------------------------------------------- 109 (305)
|.++|.+|.. +..+++|+.|+++.+..
T Consensus 524 N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 524 NSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 5555555543 55555555555443100
Q ss_pred ------------------------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCC
Q 040815 110 ------------------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL 165 (305)
Q Consensus 110 ------------------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 165 (305)
....++.|+.||+++|.++|.+|..+++++.|+.|+|++|+++|.+|..++++++|
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 01124678999999999999999999999999999999999999999999999999
Q ss_pred CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCCCCCCCCC
Q 040815 166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGCESGE 236 (305)
Q Consensus 166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~ 236 (305)
++|||++|+++|.+|..+..++.|++||+++|+++|.+|...++.++...+|.|||.+||.|+. .|....
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999987 787654
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.7e-34 Score=250.30 Aligned_cols=225 Identities=29% Similarity=0.429 Sum_probs=151.2
Q ss_pred EEEccC-CccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 2 EAKRSH-NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 2 ~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+|+|++ |.+.+.+|..|.++++|++|++++|.+++.+|..|..+++|++|++++|.+++..|..+ ..+++|++|+++
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~ 157 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFD 157 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH--hcCCCCCeEECc
Confidence 344442 44444444445555555555555555544445455555555555555555544444333 445555555555
Q ss_pred CCcCcccCChhhhhccc-hhhhhhhcccccc------CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 81 NNRFSGNLPSKSFLCWN-AMKIVNARRMMTY------NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~-~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
+|.+++.+|.. +..+. +|+.|+++.+... ...+. |+.|++++|.+++..|..+..+++|+.|+|++|.+++
T Consensus 158 ~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 55555555543 34443 5555555432111 11122 7777777777777777777888888888888888886
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPLSKGC 232 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~c 232 (305)
.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|....++.+..+.+.+|+++|+.|.. .|
T Consensus 236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 6655 77889999999999999999999999999999999999999999999888889999999999999998765 35
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=262.84 Aligned_cols=220 Identities=25% Similarity=0.293 Sum_probs=143.5
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..+ ..+++|+.|++++
T Consensus 270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF--YGLPKVAYIDLQK 347 (844)
T ss_dssp EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC--SSCTTCCEEECCS
T ss_pred EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh--cCCCCCCEEECCC
Confidence 56666666666666666666666666666666666556666666666666666666665555444 5566666666666
Q ss_pred CcCcccCChhhhhccchhhhhhhcccccc----------------------------------------------Ccccc
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTY----------------------------------------------NKIPD 115 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~----------------------------------------------~~~~~ 115 (305)
|.+. .++...|..+++|+.|+++++... ...++
T Consensus 348 N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 348 NHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp CCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred CCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence 6665 455445555555555555431100 00123
Q ss_pred cccEEEccCCcccc------------------------------ccchhhhCCCCCCEEecCCccccccCCccccCCCCC
Q 040815 116 ILAGIILSNNRFVG------------------------------AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNL 165 (305)
Q Consensus 116 ~L~~L~ls~n~l~~------------------------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 165 (305)
.|+.|++++|.+++ ..+..|..+++|+.|+|++|++++.+|..|..+++|
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 44444444444432 223446667778888888888887777778888888
Q ss_pred CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCC
Q 040815 166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
++|+|++|++++..+..+. ++|+.||+++|++++..|. .+..+..+++.+||+.|+|+.
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence 8888888888866655554 7788888888888887775 456778888999999999875
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=8.4e-31 Score=239.46 Aligned_cols=223 Identities=20% Similarity=0.145 Sum_probs=199.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.|++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..+ ..+++|++|+|+
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 155 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF--EYLSKLRELWLR 155 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS--SSCTTCCEEECC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh--cccCCCCEEECC
Confidence 579999999998889999999999999999999998888999999999999999999998876666 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
+|.+. .+|...|..+++|+.|++.... .....+++|+.|++++|.+++ +| .+..+++|+.|+|++|.+++
T Consensus 156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 99999 8888889999999999987622 123457889999999999984 45 47889999999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. ..+..+..+.+.+||+.|+|..
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 98999999999999999999999988999999999999999999999655543 4567788889999999999974
No 5
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=238.12 Aligned_cols=223 Identities=20% Similarity=0.159 Sum_probs=199.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.++...+..+ ..+++|+.|+++
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 144 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLR 144 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS--CSCSSCCEEECC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh--hccccCceeeCC
Confidence 579999999998888999999999999999999998888899999999999999999998776666 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
+|.+. .++...|..+++|+.|++.... .....+++|+.|++++|.++ .+| .+..+++|+.|+|++|.+++
T Consensus 145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 99999 8888889999999999987622 22345788999999999998 566 47889999999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
..|..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+.. ..+..+..+++.+||+.|+|..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 88999999999999999999999998999999999999999999999665543 4567788889999999999954
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.8e-30 Score=248.78 Aligned_cols=220 Identities=29% Similarity=0.375 Sum_probs=166.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++..|..+ ..+++|+.|+++
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~ 498 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLS 498 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECC
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEcc
Confidence 356666666666666666667777777777777766677777777777777777777776665555 667777888888
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccccc------CcccccccEEEccCCccccccchhhhC-----------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTY------NKIPDILAGIILSNNRFVGAIPASIAN----------------- 137 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~l~~~~p~~~~~----------------- 137 (305)
+|++++.+|.. +..+++|+.|++.++... ...++.|+.|++++|.++|.+|..+..
T Consensus 499 ~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~ 577 (768)
T 3rgz_A 499 NNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577 (768)
T ss_dssp SSCCCSCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEE
T ss_pred CCccCCcCChH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccc
Confidence 88777777754 677777777777653221 233567888888888888777765432
Q ss_pred -----------------------------------------------------CCCCCEEecCCccccccCCccccCCCC
Q 040815 138 -----------------------------------------------------LKGLQVLNLQYNNLQGLIPSSLGNLTN 164 (305)
Q Consensus 138 -----------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 164 (305)
+++|+.|||++|+++|.+|..++.+++
T Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 657 (768)
T 3rgz_A 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657 (768)
T ss_dssp EECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTT
T ss_pred cccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcccc
Confidence 456888999999999999999999999
Q ss_pred CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCC
Q 040815 165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGL 223 (305)
Q Consensus 165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~ 223 (305)
|+.|+|++|.++|.+|..+..+++|+.||+++|+++|.+|.. ..+..+..+++.+|...
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 999999999999999999999999999999999999999875 44566777778887643
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2e-30 Score=225.80 Aligned_cols=218 Identities=23% Similarity=0.331 Sum_probs=192.0
Q ss_pred CEEEccCCcccc--ccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEE
Q 040815 1 MEAKRSHNLFEG--RIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L 77 (305)
++|+|++|.+++ .+|..+.++++|++|++++ |.+.+.+|..|+.+++|++|+|++|.+++..|..+ ..+++|++|
T Consensus 53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L 130 (313)
T 1ogq_A 53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--SQIKTLVTL 130 (313)
T ss_dssp EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--GGCTTCCEE
T ss_pred EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--hCCCCCCEE
Confidence 369999999999 8999999999999999995 99999999999999999999999999998887766 889999999
Q ss_pred EccCCcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN 150 (305)
Q Consensus 78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 150 (305)
++++|.+.+.+|.. +..+++|+.|+++.+.. +....+.|+.|++++|.+++.+|..+..++ |+.|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999888865 88999999999876432 222234899999999999999999999987 9999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCC
Q 040815 151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGL 223 (305)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~ 223 (305)
+++.+|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|.. ..+..+..+++.+|...
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 9999999999999999999999999977766 788999999999999999888864 45667777888888654
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.2e-29 Score=228.88 Aligned_cols=115 Identities=23% Similarity=0.191 Sum_probs=88.1
Q ss_pred cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEe
Q 040815 114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193 (305)
Q Consensus 114 ~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 193 (305)
++.|+.|++++|.+++..|..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|++|+
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 45667777777777766666777777777777777777776677777788888888888888877777888888888888
Q ss_pred ccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 194 VSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 194 l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
+++|.+++..+.. ..++.+..+++.+|++.|+||.
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 8888888654433 4567788888999999999873
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.6e-29 Score=238.01 Aligned_cols=111 Identities=21% Similarity=0.305 Sum_probs=91.0
Q ss_pred cEEEccCCcc-ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815 118 AGIILSNNRF-VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196 (305)
Q Consensus 118 ~~L~ls~n~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 196 (305)
+.|++++|.+ .+..|..|..+++|++|+|++|++++..|.+|.++++|++|+|++|++++..|..+..+++|++||+++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 3344444432 223456677788999999999999998899999999999999999999988888999999999999999
Q ss_pred CcccCCCCCC-CCC-CccCCCccCCCCCCCCCCC
Q 040815 197 NYLTGPIPQG-KQF-ATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 197 N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~~ 228 (305)
|++++..|.. ..+ ..+..+++.+||+.|+|..
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999887764 233 4678889999999999964
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.7e-29 Score=214.23 Aligned_cols=221 Identities=17% Similarity=0.192 Sum_probs=163.8
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|++|++++
T Consensus 15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSD 89 (285)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCS
T ss_pred EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc--CCccCCCEEeCCC
Confidence 4666666666 455433 4567777777777766555666777777777777777766655555 6667777777777
Q ss_pred Cc-CcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc
Q 040815 82 NR-FSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL 154 (305)
Q Consensus 82 n~-l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 154 (305)
|. +. .++...|..+++|+.|++.++. .....++.|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 76 44 5555556667777777665421 1123367788999999999876677788899999999999999977
Q ss_pred CCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040815 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
.+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+. ...++.+..+++.+|++.|+|+.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 777788899999999999999988888899999999999999999865543 24567778888999999998864
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.5e-27 Score=203.38 Aligned_cols=203 Identities=22% Similarity=0.224 Sum_probs=170.5
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.++...+..+ ..+++|++|+++
T Consensus 19 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~--~~l~~L~~L~l~ 93 (270)
T 2o6q_A 19 NSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF--KELKNLETLWVT 93 (270)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT--SSCTTCCEEECC
T ss_pred CEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh--cCCCCCCEEECC
Confidence 46899999999 5776654 789999999999988777789999999999999999987766555 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.+. .+|...|.. ++.|+.|++++|.+++..+..|..+++|+.|+|++|.+++..+..|.
T Consensus 94 ~n~l~-~~~~~~~~~------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQ------------------LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp SSCCC-CCCTTTTTT------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCcCC-cCCHhHccc------------------ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 99998 777665554 45577888999999977778888999999999999999977667788
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCCCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+. ...+..+..+.+.+||+.|+|+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999999999977777788899999999999999865443 2446677888899999999886
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=8.3e-29 Score=216.99 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=169.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+ ..+++|++|+++
T Consensus 84 ~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~L~L~ 158 (328)
T 4fcg_A 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRELSIR 158 (328)
T ss_dssp CEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCEEEEE
T ss_pred eEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCEEECC
Confidence 47999999999 78888999999999999999998 78999999999999999999998 445554 889999999999
Q ss_pred CCcCcccCChhh--------hhccchhhhhhhccccc-----cCcccccccEEEccCCccccccchhhhCCCCCCEEecC
Q 040815 81 NNRFSGNLPSKS--------FLCWNAMKIVNARRMMT-----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQ 147 (305)
Q Consensus 81 ~n~l~g~~p~~~--------~~~l~~L~~l~l~~~~~-----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls 147 (305)
+|++.+.+|... |..+++|+.|+++.+.. ....++.|+.|++++|.++ .+|..+..+++|++|+|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECc
Confidence 988888888753 23478888888776321 1233668889999999988 466678888999999999
Q ss_pred CccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815 148 YNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206 (305)
Q Consensus 148 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 206 (305)
+|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 98888888888888999999999998888888888888999999999999888888863
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=224.72 Aligned_cols=227 Identities=20% Similarity=0.236 Sum_probs=159.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCC--------------
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR-------------- 66 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------- 66 (305)
++|+|++|.+++..|.+|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+
T Consensus 59 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 59 EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 456677777666666666666666666666666665444455666666666666666655444333
Q ss_pred --------CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccc------cCcc-------------------
Q 040815 67 --------TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKI------------------- 113 (305)
Q Consensus 67 --------~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~------------------- 113 (305)
.+..+++|+.|++++|.++ .++...+..+++|+.|++..+.. ....
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred ccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 1144555555555555555 45555555555555555443100 0000
Q ss_pred -----cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCC
Q 040815 114 -----PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF 188 (305)
Q Consensus 114 -----~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 188 (305)
..+|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..+..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 126777888888888555567889999999999999999888888999999999999999999988999999999
Q ss_pred CCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 189 LEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 189 L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
|++|++++|.+++..+.. ..+..+..+.+.+|++.|+|+.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 999999999999655432 4566788889999999999853
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=214.03 Aligned_cols=224 Identities=17% Similarity=0.181 Sum_probs=187.5
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEE
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 78 (305)
++|+|++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++|.++... ..+ ..+++|++|+
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~-~~~--~~l~~L~~L~ 107 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNF--LGLEQLEHLD 107 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE-EEE--ETCTTCCEEE
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh-hhc--CCCCCCCEEE
Confidence 5799999999955555689999999999999998733 3667778999999999999987643 233 7799999999
Q ss_pred ccCCcCcccCCh-hhhhccchhhhhhhcccc------ccCcccccccEEEccCCcccc-ccchhhhCCCCCCEEecCCcc
Q 040815 79 LSNNRFSGNLPS-KSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVG-AIPASIANLKGLQVLNLQYNN 150 (305)
Q Consensus 79 L~~n~l~g~~p~-~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~ 150 (305)
+++|.+. .++. ..+..+++|+.|+++.+. .....++.|+.|++++|.+++ ..|..+..+++|+.|++++|.
T Consensus 108 l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 9999998 5554 568889999999987632 123346889999999999986 578889999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCC-CccCCCccCCCCCCCCCCC
Q 040815 151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQF-ATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~~~~ 228 (305)
+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|.. ..+ ..+..+++.+|++.|+|+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99888999999999999999999999877778899999999999999999887754 334 3678888999999998753
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2e-29 Score=223.08 Aligned_cols=223 Identities=18% Similarity=0.194 Sum_probs=182.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~ 132 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF--KPLSSLTFLNLL 132 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH--TTCTTCSEEECT
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh--CCCccCCEEECC
Confidence 578999999997666689999999999999999988778889999999999999999987654434 778999999999
Q ss_pred CCcCcccCCh-hhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815 81 NNRFSGNLPS-KSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 81 ~n~l~g~~p~-~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
+|.+. .+|. ..|..+++|+.|+++.+. .....++.|+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 99998 7776 668889999999887642 12234678899999999998888888999999999999999887
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCcc-------------------------------CccccccCCCCCEEeccCCcccC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGR-------------------------------IPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~-------------------------------~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
...+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 44333445688899999999988763 3455778899999999999999
Q ss_pred CCCCC--CCCCccCCCccCCCCCCCCCC
Q 040815 202 PIPQG--KQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 202 ~~p~~--~~~~~l~~~~~~~n~~~c~~~ 227 (305)
.+|.. ..++.+..+++.+|++.|+|+
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 55553 467788889999999999986
No 16
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.3e-27 Score=204.29 Aligned_cols=205 Identities=20% Similarity=0.213 Sum_probs=136.4
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|++|++++
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~ 109 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVE 109 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTT
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh--cCCccccEEECCC
Confidence 45555555554444445555555555555555544444445555555555555555544443333 4455555555555
Q ss_pred CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc-cchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA-IPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
|.+. .++...+ ..++.|+.|++++|.+++. +|..+..+++|+.|++++|++++..+..+.
T Consensus 110 n~l~-~~~~~~~------------------~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 110 TNLA-SLENFPI------------------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp SCCC-CSTTCCC------------------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCcc-ccCchhc------------------ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 5554 3332212 2356788899999999863 688999999999999999999987777777
Q ss_pred CCCCCC----EEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 161 NLTNLE----SLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 161 ~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
.+++|+ +|++++|.+++..+..+ ...+|++|++++|.+++..+.. ..+..+..+.+.+|++.|+|+.
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 777776 89999999986555544 4458999999999999665543 4567788888999999999863
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=9e-28 Score=215.27 Aligned_cols=219 Identities=17% Similarity=0.157 Sum_probs=145.1
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.++...+..+ ..+++|++|+++
T Consensus 72 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~ 149 (390)
T 3o6n_A 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS 149 (390)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHh--cCCCCCcEEECC
Confidence 467777887776666677777888888888887777667777777788888888887776544444 567777777777
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc---------------------------------------------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT--------------------------------------------------- 109 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--------------------------------------------------- 109 (305)
+|.+. .+++..|..+++|+.|++..+..
T Consensus 150 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L 228 (390)
T 3o6n_A 150 NNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228 (390)
T ss_dssp SSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred CCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence 77777 55555577777777766554110
Q ss_pred --------------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815 110 --------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175 (305)
Q Consensus 110 --------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 175 (305)
....++.|+.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|++|++++|.+
T Consensus 229 ~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 229 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred cEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc
Confidence 01113455566666666665556666666666666666666663 344455666667777777766
Q ss_pred CccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK 226 (305)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 226 (305)
+ .+|..+..+++|++|++++|.++.. | ...++.+..+++.+|++.|++
T Consensus 308 ~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 308 L-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred e-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence 6 4555566677777777777777643 3 335667777788888888865
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=9.5e-28 Score=226.53 Aligned_cols=219 Identities=17% Similarity=0.157 Sum_probs=153.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..+ ..+++|++|+++
T Consensus 78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~Ls 155 (597)
T 3oja_B 78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMS 155 (597)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh--ccCCCCCEEEee
Confidence 468888888887777788888888888888888887777777888888888888888876655544 677888888888
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc---------------------------------------------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT--------------------------------------------------- 109 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--------------------------------------------------- 109 (305)
+|.+. .+++..|..+++|+.|+++++..
T Consensus 156 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L 234 (597)
T 3oja_B 156 NNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234 (597)
T ss_dssp SSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred CCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence 88887 45555577777777777654210
Q ss_pred --------------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815 110 --------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175 (305)
Q Consensus 110 --------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 175 (305)
....++.|+.|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+
T Consensus 235 ~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l 313 (597)
T 3oja_B 235 TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 313 (597)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred CEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence 01123456666666666666666666666666666666666664 355555667777777777777
Q ss_pred CccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK 226 (305)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 226 (305)
+ .+|..+..+++|++|++++|.+++. | ...++.+..+.+.+|++.|+|
T Consensus 314 ~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 314 L-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred C-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 6 5666667777777777777777644 2 235667778888899888865
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=7.1e-28 Score=227.66 Aligned_cols=227 Identities=19% Similarity=0.177 Sum_probs=140.0
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcCh-hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPS-WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
++|++++|.+++..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++....+..+..+++|+.|++
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 4566677766655565666666666666666665544433 255555555555555555544311111244445555555
Q ss_pred cCCc------------------------CcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCcccc
Q 040815 80 SNNR------------------------FSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVG 129 (305)
Q Consensus 80 ~~n~------------------------l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~ 129 (305)
++|. +.+..+...+..+++|+.|+++++. .....++.|++|++++|.+++
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 5544 4433333334445555555544321 112235567777777777664
Q ss_pred c---cchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815 130 A---IPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206 (305)
Q Consensus 130 ~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 206 (305)
. .+..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..++.| +|++++|.+++..|..
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence 2 22456677777777777777777777777788888888888888887777788888888 8888888888666543
Q ss_pred -CCCCccCCCccCCCCCCCCCCC
Q 040815 207 -KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 207 -~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
..+..+..+++.+||+.|+|+.
T Consensus 543 ~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 543 LPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp HHHHHTSSEEECTTCCEECSGGG
T ss_pred cccCCCCCEEeCCCCCccccCCc
Confidence 3455677888999999998863
No 20
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=5.8e-27 Score=201.76 Aligned_cols=201 Identities=22% Similarity=0.182 Sum_probs=168.9
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+++++++|.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|.+++..+. ..+++|+.|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~L~Ls 85 (290)
T 1p9a_G 13 LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGTLDLS 85 (290)
T ss_dssp CEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCEEECC
T ss_pred cEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCEEECC
Confidence 47899999998 6776653 7999999999999988888999999999999999999876433 578999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.+. .+|.. +.. ++.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus 86 ~N~l~-~l~~~-~~~------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 86 HNQLQ-SLPLL-GQT------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp SSCCS-SCCCC-TTT------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCcCC-cCchh-hcc------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 99998 77753 332 45688888999999977778899999999999999999987777888
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
.+++|+.|+|++|+++...+..+..+++|++|++++|.++...+.......+..+.+.+||+.|+|..
T Consensus 146 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCcc
Confidence 99999999999999996666677889999999999999994433334455677888999999998853
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=205.58 Aligned_cols=223 Identities=17% Similarity=0.165 Sum_probs=188.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCcc-CCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNI-FYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L 79 (305)
++|+|++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. ++...+..+ ..+++|++|++
T Consensus 35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--~~l~~L~~L~l 112 (285)
T 1ozn_A 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--HGLGRLHTLHL 112 (285)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--TTCTTCCEEEC
T ss_pred eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--cCCcCCCEEEC
Confidence 579999999998777889999999999999999998889999999999999999997 777766666 88999999999
Q ss_pred cCCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
++|.+. .++...|..+++|+.|+++.+. .....++.|+.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 113 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 999999 6666679999999999988632 123447889999999999997666779999999999999999999
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK 226 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 226 (305)
..|..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+....+..+.......+...|..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 8899999999999999999999987778899999999999999999987664322233344444455554543
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=4.5e-27 Score=214.68 Aligned_cols=107 Identities=19% Similarity=0.210 Sum_probs=74.1
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEecc
Q 040815 116 ILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVS 195 (305)
Q Consensus 116 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 195 (305)
.|+.|++++|.+++..|..+..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 35555555555555556667777777777777777777777777777777777777777776667777777778888888
Q ss_pred CCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815 196 DNYLTGPIPQG-KQFATFDNTSFDGNSG 222 (305)
Q Consensus 196 ~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 222 (305)
+|.+++..|.. ..++.+..+++.+|..
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCcccccChhhccccccccEEECCCCcc
Confidence 88777665543 4455666666666654
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.4e-27 Score=214.21 Aligned_cols=202 Identities=16% Similarity=0.099 Sum_probs=181.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.|++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..+ ..+++|+.|+++
T Consensus 102 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~ 179 (452)
T 3zyi_A 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLG 179 (452)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred CEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCC
Confidence 579999999998888999999999999999999998777889999999999999999998766666 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|+..+.++...|..+++|+.|+++.+.. ....++.|+.|++++|.+++..|..|..+++|+.|+|++|++++..|
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred CCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 96655589988899999999999876321 22346789999999999998889999999999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 204 (305)
..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999999999998777888999999999999999987654
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=5.9e-27 Score=213.25 Aligned_cols=202 Identities=18% Similarity=0.122 Sum_probs=181.7
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+.+|.++++|++|+|++|++++..+..|..+++|++|+|++|.++...+..+ ..+++|+.|+++
T Consensus 91 ~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~l~ 168 (440)
T 3zyj_A 91 EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLG 168 (440)
T ss_dssp CEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT--TTCTTCCEEECC
T ss_pred CEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh--hhCcccCEeCCC
Confidence 579999999998888999999999999999999998777789999999999999999998776666 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|+..+.++...|..+++|+.|+++.+.. ....++.|+.|++++|.+++..|..|..+++|+.|+|++|++++..+
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 96655589988899999999999886321 22346789999999999998889999999999999999999999999
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 204 (305)
..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 999999999999999999998888888999999999999999987654
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=8.7e-27 Score=204.43 Aligned_cols=195 Identities=22% Similarity=0.231 Sum_probs=138.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|.++++|++|++++|.+++..|..|+.+++|++|++++|.++... ... .++|++|+++
T Consensus 57 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~----~~~L~~L~l~ 131 (332)
T 2ft3_A 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-PNL----PSSLVELRIH 131 (332)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCC-SSC----CTTCCEEECC
T ss_pred eEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccC-ccc----cccCCEEECC
Confidence 57999999999777889999999999999999999888889999999999999999998543 222 2788888888
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccccc--------Cc--------------------ccccccEEEccCCccccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NK--------------------IPDILAGIILSNNRFVGAIP 132 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~--------------------~~~~L~~L~ls~n~l~~~~p 132 (305)
+|.+. .+|...|..+++|+.|++..+... .. ..+.|+.|++++|.+++..+
T Consensus 132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCH
Confidence 88888 777777888888888877653210 00 11345555666666655555
Q ss_pred hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 133 ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 133 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++.
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 55666666666666666666555555666666666666666666 5555566666666666666666543
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=3.2e-26 Score=200.61 Aligned_cols=212 Identities=21% Similarity=0.186 Sum_probs=163.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.++.. |... .++|+.|+++
T Consensus 55 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~----~~~L~~L~l~ 129 (330)
T 1xku_A 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM----PKTLQELRVH 129 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC----CTTCCEEECC
T ss_pred eEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh----cccccEEECC
Confidence 5799999999987777899999999999999999988899999999999999999999854 3222 3789999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc--------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT--------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
+|.+. .++...|..+++|+.|++..+.. ....++.|+.|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 99998 77777788888888888775322 1233567888888888777 4554443 67788888888877
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSG 222 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~ 222 (305)
+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ...++.+..+.+.+|..
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 777777777788888888888877766667777778888888888777 4443 34455666666776654
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=1.4e-26 Score=195.29 Aligned_cols=210 Identities=20% Similarity=0.224 Sum_probs=169.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|+|++|.+++..+..+ ..+++|++|+++
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 91 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF--DDLTELGTLGLA 91 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECT
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh--ccCCcCCEEECC
Confidence 46899999999 6777664 799999999999999888899999999999999999998877666 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.++ .+|...|.. ++.|+.|++++|.+++..+..|..+++|++|+|++|++++..+..|.
T Consensus 92 ~n~l~-~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 92 NNQLA-SLPLGVFDH------------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp TSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCccc-ccChhHhcc------------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 99999 777665554 45678888999999977777789999999999999999987777899
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCc------cCCCccCCCCCCCCCCCCCCCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFAT------FDNTSFDGNSGLCGKPLSKGCES 234 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~------l~~~~~~~n~~~c~~~~~~~c~~ 234 (305)
.+++|++|+|++|++++..+..+..+++|++|++++|++++.......+.. .......|+. .|+.+....|..
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~ 231 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSD 231 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTT
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCC
Confidence 999999999999999988888899999999999999999987443221111 1111223333 566666667766
Q ss_pred C
Q 040815 235 G 235 (305)
Q Consensus 235 ~ 235 (305)
+
T Consensus 232 ~ 232 (251)
T 3m19_A 232 G 232 (251)
T ss_dssp S
T ss_pred C
Confidence 5
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.1e-27 Score=205.62 Aligned_cols=196 Identities=19% Similarity=0.199 Sum_probs=177.0
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCC-------CCCCCC
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRT-------GCGFSK 73 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~~~l~~ 73 (305)
++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..+. +..+++
T Consensus 107 ~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~ 184 (328)
T 4fcg_A 107 QHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184 (328)
T ss_dssp SEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTT
T ss_pred CEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCC
Confidence 58999999999 89999999999999999999998 7899999999999999999988887776651 134899
Q ss_pred ccEEEccCCcCcccCChhhhhccchhhhhhhccccc-----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCC
Q 040815 74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY 148 (305)
Q Consensus 74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 148 (305)
|++|++++|.++ .+|.. +..+++|+.|+++++.. ....++.|+.|++++|.+.+.+|..+..+++|+.|+|++
T Consensus 185 L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 185 LQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 999999999999 99976 88999999999876321 123467899999999999999999999999999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCccc
Q 040815 149 NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
|.+.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.+++..|.+.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999988775
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=6.5e-27 Score=223.97 Aligned_cols=225 Identities=16% Similarity=0.132 Sum_probs=180.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcC-hhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
++|+|++|++++..|.+|..+++|++|++++|.+++.+| ..|..+++|++|++++|.+++..+..+ ..+++|+.|++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~~L~~L~l 461 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF--ALVPSLQRLML 461 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT--TTCTTCCEEEC
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh--hcCcccccchh
Confidence 467888888888888888889999999999998876555 678888999999999998887776666 67888999999
Q ss_pred cCCcCc--ccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccc--------hhhhCCCCCCE
Q 040815 80 SNNRFS--GNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIP--------ASIANLKGLQV 143 (305)
Q Consensus 80 ~~n~l~--g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p--------~~~~~l~~L~~ 143 (305)
++|.+. +.+|. .|..+++|+.|+++++. .....++.|+.|++++|.+++..+ ..+..+++|++
T Consensus 462 ~~n~l~~~~~~p~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 462 RRVALKNVDSSPS-PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp TTSCCBCTTCSSC-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred ccccccccccCCc-ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 888876 34554 47888888888887632 123446789999999999885422 23778899999
Q ss_pred EecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC--CCCccCCCccCCCC
Q 040815 144 LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK--QFATFDNTSFDGNS 221 (305)
Q Consensus 144 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~l~~~~~~~n~ 221 (305)
|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|.+++..|... .+..+..+++.+||
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCC
Confidence 9999999995555678999999999999999997666778889999999999999997665431 45678888999999
Q ss_pred CCCCCCC
Q 040815 222 GLCGKPL 228 (305)
Q Consensus 222 ~~c~~~~ 228 (305)
+.|+|+.
T Consensus 621 ~~c~c~~ 627 (680)
T 1ziw_A 621 FDCTCES 627 (680)
T ss_dssp CCBCCCC
T ss_pred cccCCcc
Confidence 9999974
No 30
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6.9e-26 Score=193.06 Aligned_cols=184 Identities=18% Similarity=0.205 Sum_probs=162.5
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+.+|.++++|++|++++|.++...+..|..+++|++|++++|.++...+..+ ..+++|+.|+++
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 117 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF--DQLVNLAELRLD 117 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT--TTCSSCCEEECC
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc--ccccCCCEEECC
Confidence 579999999997777799999999999999999987767778899999999999999998776665 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.++ .++...|.. ++.|+.|++++|.+++..+..|..+++|+.|+|++|.+++..+..|.
T Consensus 118 ~n~l~-~~~~~~~~~------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (270)
T 2o6q_A 118 RNQLK-SLPPRVFDS------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178 (270)
T ss_dssp SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCccC-eeCHHHhCc------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence 99999 666655554 45678888999999977677789999999999999999987777899
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
.+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 999999999999999977777788999999999999999987654
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=6.1e-27 Score=221.25 Aligned_cols=221 Identities=16% Similarity=0.101 Sum_probs=178.4
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCC--cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDT--FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
+|++++|...+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++.. ..+ ..+++|+.|++
T Consensus 332 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~--~~l~~L~~L~l 406 (606)
T 3vq2_A 332 SLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANF--MGLEELQHLDF 406 (606)
T ss_dssp EEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCC--TTCTTCCEEEC
T ss_pred eeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhc--cCCCCCCeeEC
Confidence 4455555333222 455778888888888888765 3777888888999999888887643 333 77899999999
Q ss_pred cCCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCcccc-ccchhhhCCCCCCEEecCCcccc
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVG-AIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
++|.+.+..|...+..+++|+.|+++.+.. ....++.|+.|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 999998655546688899999998876322 23346889999999999997 47888999999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCC-ccCCCccCCCCCCCCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA-TFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~l~~~~~~~n~~~c~~~~ 228 (305)
+..|..+..+++|++|++++|++++.+|..+..+++|++|++++|+++ .+|.. ..++ .+..+++.+||+.|+|+.
T Consensus 487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999999999988999999999999999999999 55553 3444 478888999999999875
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.5e-26 Score=217.22 Aligned_cols=216 Identities=16% Similarity=0.197 Sum_probs=177.9
Q ss_pred CEEEccCCccccccchhccCCCC-CcEEeCCCcccCCCcChhccCCC--CCCEEEccCccCCcccCCCCCCC-------C
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSK-LEFLGLGNYQISDTFPSWLGTLP--KLNVLILRSNIFYGVIEEPRTGC-------G 70 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~-------~ 70 (305)
++|+|++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|++|++++|.+++..|..+ . .
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l--~~~~~~~~~ 431 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF--DPLDPTPFK 431 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS--CTTCSSCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh--ccccccccc
Confidence 46777777777 67777788887 888888888887 6777776544 78888888888887766655 4 6
Q ss_pred CCCccEEEccCCcCcccCChhhhhccchhhhhhhcccccc------Cccc-------ccccEEEccCCccccccchhhh-
Q 040815 71 FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY------NKIP-------DILAGIILSNNRFVGAIPASIA- 136 (305)
Q Consensus 71 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~------~~~~-------~~L~~L~ls~n~l~~~~p~~~~- 136 (305)
+++|+.|++++|.++ .+|...+..+++|+.|+++.+... .... +.|+.|++++|.++ .+|..+.
T Consensus 432 ~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred CCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 679999999999999 899888888999999998763221 1111 28999999999999 7888887
Q ss_pred -CCCCCCEEecCCccccccCCccccCCCCCCEEeC------CCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCC
Q 040815 137 -NLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDL------SNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 209 (305)
Q Consensus 137 -~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~ 209 (305)
.+++|+.|+|++|++++ +|..+..+++|++|+| ++|.+.+.+|..+..+++|++|++++|.+ +.+|... .
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~ 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-T 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-C
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-h
Confidence 99999999999999997 8999999999999999 56888999999999999999999999999 5778753 3
Q ss_pred CccCCCccCCCCCCCC
Q 040815 210 ATFDNTSFDGNSGLCG 225 (305)
Q Consensus 210 ~~l~~~~~~~n~~~c~ 225 (305)
+.+..+++.+|+..|-
T Consensus 587 ~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 587 PNISVLDIKDNPNISI 602 (636)
T ss_dssp TTCCEEECCSCTTCEE
T ss_pred CcCCEEECcCCCCccc
Confidence 7888889999998774
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5.8e-26 Score=198.98 Aligned_cols=218 Identities=19% Similarity=0.275 Sum_probs=183.0
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..|..|.++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+ ..+++|+.|+++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 153 (330)
T 1xku_A 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVF--NGLNQMIVVELG 153 (330)
T ss_dssp CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHH--TTCTTCCEEECC
T ss_pred CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHh--cCCccccEEECC
Confidence 58999999999888999999999999999999997 4665553 799999999999988765555 789999999999
Q ss_pred CCcCcc-cCChhhhhccchhhhhhhcccccc---CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSG-NLPSKSFLCWNAMKIVNARRMMTY---NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g-~~p~~~~~~l~~L~~l~l~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|.+.. .+....+..+++|+.|++..+... ....+.|+.|++++|.+++..|..+..+++|+.|++++|.+++..+
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 233 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh
Confidence 999962 244456889999999998763211 1234789999999999998888999999999999999999998888
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC-------CCCccCCCccCCCCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK-------QFATFDNTSFDGNSGLC 224 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-------~~~~l~~~~~~~n~~~c 224 (305)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+... ....+..+++.+||..+
T Consensus 234 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred hhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 88999999999999999999 888899999999999999999996544321 12445667788888755
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.7e-27 Score=207.23 Aligned_cols=214 Identities=23% Similarity=0.258 Sum_probs=162.2
Q ss_pred EEEccCCccc-cccchhcc-------CCCCCcEEeCCCcccCCCcChhc--cCCCCCCEEEccCccCCcccCCCCCCCCC
Q 040815 2 EAKRSHNLFE-GRIPRSLI-------NCSKLEFLGLGNYQISDTFPSWL--GTLPKLNVLILRSNIFYGVIEEPRTGCGF 71 (305)
Q Consensus 2 ~L~Ls~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 71 (305)
+|+|++|.++ +.+|..+. ++++|++|++++|.+++.+|..+ ..+++|++|+|++|.+++. |..+ ..+
T Consensus 67 ~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~--~~l 143 (312)
T 1wwl_A 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL--AEL 143 (312)
T ss_dssp HCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH--HHH
T ss_pred hcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH--HHH
Confidence 4667777773 45665554 67788888888888877777765 6778888888888887766 4333 333
Q ss_pred -----CCccEEEccCCcCcccCChhhhhccchhhhhhhccccc----------cCcccccccEEEccCCcccc--ccc-h
Q 040815 72 -----SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT----------YNKIPDILAGIILSNNRFVG--AIP-A 133 (305)
Q Consensus 72 -----~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----------~~~~~~~L~~L~ls~n~l~~--~~p-~ 133 (305)
++|++|++++|++. .++...|..+++|+.|+++++.. ....++.|++|++++|.+++ .++ .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 77888888888887 55555577777888777776431 11446889999999999983 222 4
Q ss_pred hhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCcc
Q 040815 134 SIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 212 (305)
Q Consensus 134 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 212 (305)
.+..+++|+.|+|++|.+++.+| ..+..+++|++|+|++|.++ .+|..+. ++|++||+++|++++. |....++.+
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L 298 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQV 298 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCC
Confidence 45688999999999999998775 45677899999999999999 7888776 8899999999999976 667778888
Q ss_pred CCCccCCCCCC
Q 040815 213 DNTSFDGNSGL 223 (305)
Q Consensus 213 ~~~~~~~n~~~ 223 (305)
..+++.+|+..
T Consensus 299 ~~L~L~~N~l~ 309 (312)
T 1wwl_A 299 GNLSLKGNPFL 309 (312)
T ss_dssp EEEECTTCTTT
T ss_pred CEEeccCCCCC
Confidence 88889999763
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=3.5e-27 Score=216.80 Aligned_cols=224 Identities=17% Similarity=0.110 Sum_probs=160.6
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|++++
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~ 185 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRH 185 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH--TTCTTCCEEEEES
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh--cccCCCcEEeCCC
Confidence 45555555555555555556666666666666555555556666666666666666655433333 5677777777777
Q ss_pred CcCcccCChhhhhccchhhhhhhcc------------------------cc------ccCcccccccEEEccCCcccccc
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARR------------------------MM------TYNKIPDILAGIILSNNRFVGAI 131 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~------------------------~~------~~~~~~~~L~~L~ls~n~l~~~~ 131 (305)
|.+. .++...|..+++|+.|+++. +. .....++.|+.|++++|.+++..
T Consensus 186 n~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 264 (477)
T 2id5_A 186 LNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264 (477)
T ss_dssp CCCC-EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred CcCc-EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence 7777 45555566666666655443 11 11234678999999999999888
Q ss_pred chhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCc
Q 040815 132 PASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFAT 211 (305)
Q Consensus 132 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~ 211 (305)
+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++.++....+..
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~ 344 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRR 344 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhh
Confidence 88899999999999999999999999999999999999999999987778889999999999999999987653222223
Q ss_pred cCCCccCCCCCCCCCCC
Q 040815 212 FDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 212 l~~~~~~~n~~~c~~~~ 228 (305)
.....+.++...|..|.
T Consensus 345 ~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 345 RWRLNFNRQQPTCATPE 361 (477)
T ss_dssp TTSSCCTTCCCBEEESG
T ss_pred hhccccCccCceeCCch
Confidence 33455677777776553
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.8e-27 Score=202.02 Aligned_cols=200 Identities=20% Similarity=0.174 Sum_probs=173.5
Q ss_pred CEEEccCCccccc--cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEE
Q 040815 1 MEAKRSHNLFEGR--IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L 77 (305)
++|+|++|.++.. .+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+ ..+++|++|
T Consensus 55 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L 131 (306)
T 2z66_A 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF--LSLRNLIYL 131 (306)
T ss_dssp SEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTT--TTCTTCCEE
T ss_pred CEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhh--hhccCCCEE
Confidence 5799999999833 4678888999999999999997 477779999999999999999987654 334 789999999
Q ss_pred EccCCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN 150 (305)
Q Consensus 78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 150 (305)
++++|.+. .++...+..+++|+.|++.++. .....++.|+.|++++|.+++..|..+..+++|+.|+|++|.
T Consensus 132 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 132 DISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp ECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence 99999998 4455568899999999987632 223446789999999999998889999999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCCccCccccccCC-CCCEEeccCCcccCCCC
Q 040815 151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT-FLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p 204 (305)
+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+
T Consensus 211 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9987777899999999999999999999999999985 99999999999998654
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.7e-27 Score=221.40 Aligned_cols=215 Identities=22% Similarity=0.290 Sum_probs=179.7
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcc------------------------------------------------
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQ------------------------------------------------ 33 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~------------------------------------------------ 33 (305)
.|+|++|.++|.+|++++++++|++|+|++|.
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 68999999999999999999999999999884
Q ss_pred ------------------------------cCCCcChhccCCCCCCEEEccCccCCcc-----------------cCCCC
Q 040815 34 ------------------------------ISDTFPSWLGTLPKLNVLILRSNIFYGV-----------------IEEPR 66 (305)
Q Consensus 34 ------------------------------l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~ 66 (305)
+++ +|..|+++++|++|+|++|.+++. +|..+
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence 345 788899999999999999999984 66666
Q ss_pred CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccC-----c---------ccccccEEEccCCccccccc
Q 040815 67 TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYN-----K---------IPDILAGIILSNNRFVGAIP 132 (305)
Q Consensus 67 ~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~-----~---------~~~~L~~L~ls~n~l~~~~p 132 (305)
.+..+++|++|++++|.+.|.+|.. +..+++|+.|+++.+..+. . .++.|+.|++++|.++ .+|
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip 321 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP 321 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred hhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence 2228999999999999999899955 8899999999988765111 1 1278999999999999 888
Q ss_pred h--hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCC-CCEEeccCCcccCCCCCCCC-
Q 040815 133 A--SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQGKQ- 208 (305)
Q Consensus 133 ~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~~~- 208 (305)
. .++.+++|+.|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|....
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 8 89999999999999999998888 8888999999999999998 88888888988 999999999998 6665422
Q ss_pred --CCccCCCccCCCCC
Q 040815 209 --FATFDNTSFDGNSG 222 (305)
Q Consensus 209 --~~~l~~~~~~~n~~ 222 (305)
+..+..+++.+|..
T Consensus 399 ~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEI 414 (636)
T ss_dssp TCSSCEEEEECCSSCT
T ss_pred cccCccCEEECcCCcC
Confidence 22466666666654
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=212.89 Aligned_cols=211 Identities=21% Similarity=0.192 Sum_probs=173.6
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..|..|..+++|++|+|++|.+++..| |..+++|++|+|++|.+++.. ..++|+.|+++
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~~~~L~~L~L~ 107 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSIETLHAA 107 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-------ECTTCCEEECC
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-------CCCCcCEEECc
Confidence 579999999998888899999999999999999987665 889999999999999998763 23789999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCccccccchhhh-CCCCCCEEecCCccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIPASIA-NLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~ 153 (305)
+|.++ .++.. .+++|+.|+++++.. ....++.|+.|++++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 108 ~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99998 44432 356788888776321 223467899999999999988888886 79999999999999997
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
. |. ...+++|++|+|++|.+++..| .+..+++|+.|++++|.+++..+....++.+..+++.+|++.|++.
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred c-cc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 6 33 4468999999999999996544 5889999999999999999754444566788888999999998653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=6.8e-26 Score=203.02 Aligned_cols=216 Identities=20% Similarity=0.179 Sum_probs=155.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+ ..+++|++|+++
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 125 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLE 125 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCEEECC
Confidence 578999999996555568999999999999999998777899999999999999999998877766 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCC----------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANL---------------- 138 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l---------------- 138 (305)
+|.+. .+|...|..+++|+.|+++++. .....++.|+.|++++|.+++.....+.++
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 99999 8998888999999999988632 123346788899999888875422222211
Q ss_pred ---------------------CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815 139 ---------------------KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197 (305)
Q Consensus 139 ---------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 197 (305)
++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 1234444444444421 34555666666666666666666666666666666666666
Q ss_pred cccCCCCCCCCCCccCCCccCCCC
Q 040815 198 YLTGPIPQGKQFATFDNTSFDGNS 221 (305)
Q Consensus 198 ~l~~~~p~~~~~~~l~~~~~~~n~ 221 (305)
.+++..+....++.+..+++.+|.
T Consensus 283 ~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 283 RLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCCEEECSSSCCTTCCEEECCSSC
T ss_pred cCcccCcccCCCCCCCEEECCCCc
Confidence 666433322334555555555554
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=9.7e-27 Score=202.45 Aligned_cols=194 Identities=25% Similarity=0.293 Sum_probs=165.6
Q ss_pred CEEEccCCccccccchhc--cCCCCCcEEeCCCcccCCCcChhccCC-----CCCCEEEccCccCCcccCCCCCCCCCCC
Q 040815 1 MEAKRSHNLFEGRIPRSL--INCSKLEFLGLGNYQISDTFPSWLGTL-----PKLNVLILRSNIFYGVIEEPRTGCGFSK 73 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 73 (305)
++|+|++|++++.+|..+ ..+++|++|++++|++++. |..++.+ ++|++|+|++|.+++..+..+ ..+++
T Consensus 98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~~l~~ 174 (312)
T 1wwl_A 98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--RVFPA 174 (312)
T ss_dssp CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--CCCSS
T ss_pred cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--ccCCC
Confidence 589999999999999876 8999999999999999987 8888776 899999999999998877776 88999
Q ss_pred ccEEEccCCcCcccC--Chh-hhhccchhhhhhhcccccc---------CcccccccEEEccCCccccccc-hhhhCCCC
Q 040815 74 LRIIDLSNNRFSGNL--PSK-SFLCWNAMKIVNARRMMTY---------NKIPDILAGIILSNNRFVGAIP-ASIANLKG 140 (305)
Q Consensus 74 L~~L~L~~n~l~g~~--p~~-~~~~l~~L~~l~l~~~~~~---------~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~ 140 (305)
|++|++++|++.+.+ +.. .+..+++|+.|+++++.-. ...++.|+.|++++|.+++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 999999999987653 322 2378899999998874321 1234789999999999998775 45667899
Q ss_pred CCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 141 LQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 141 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
|++|+|++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 999999999999 7787776 8999999999999965 66 88999999999999999853
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.9e-26 Score=199.93 Aligned_cols=210 Identities=21% Similarity=0.194 Sum_probs=168.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|+.|+++
T Consensus 37 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-------~~~~L~~L~l~ 107 (317)
T 3o53_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-------VGPSIETLHAA 107 (317)
T ss_dssp SEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-------ECTTCCEEECC
T ss_pred CEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-------CCCCcCEEECC
Confidence 579999999998878899999999999999999986554 888999999999999988653 23788999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhh-hCCCCCCEEecCCccccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASI-ANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~ 153 (305)
+|.++ .++.. .+++|+.|+++.+. .....++.|+.|++++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus 108 ~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 99888 44433 35667777776532 122346789999999999998777776 478999999999999986
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLCGK 226 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 226 (305)
. +. ...+++|++|++++|++++ +|..+..+++|++|++++|.+++..+....++.+..+++.+|++.|++
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 184 V-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred c-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence 5 33 3458999999999999995 455588999999999999999954333456678888899999998764
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=9.5e-25 Score=186.21 Aligned_cols=179 Identities=23% Similarity=0.296 Sum_probs=120.0
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|++++|.++ .++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+ ..+++|++|++++
T Consensus 45 ~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 45 QIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF--DKLTNLKELVLVE 118 (272)
T ss_dssp EEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECTT
T ss_pred eeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh--cCCcCCCEEECCC
Confidence 5666666665 232 456666777777777766542 356666677777777776666554444 5666677777777
Q ss_pred CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN 161 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 161 (305)
|.++ .++...|.. ++.|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 119 n~l~-~~~~~~~~~------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 119 NQLQ-SLPDGVFDK------------------LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp SCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcCC-ccCHHHhcc------------------CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 7666 444443333 345666677777777666666677777777777777777666666777
Q ss_pred CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
+++|++|++++|.+++..+..+..+++|++|++++|++.|.+|.
T Consensus 180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 77777777777777776666677777777777777777776664
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.9e-25 Score=208.15 Aligned_cols=80 Identities=21% Similarity=0.098 Sum_probs=58.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+.+|.++++|++|++++|++++..|+.|..+++|++|+|++|.++.+... .+++|++|+++
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~Ls 129 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-----PMASLRHLDLS 129 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-----CCTTCSEEECC
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-----ccccCCEEECC
Confidence 4678888888876677888888888888888888777777788888888888888877644221 35566666666
Q ss_pred CCcCc
Q 040815 81 NNRFS 85 (305)
Q Consensus 81 ~n~l~ 85 (305)
+|.++
T Consensus 130 ~N~l~ 134 (562)
T 3a79_B 130 FNDFD 134 (562)
T ss_dssp SSCCS
T ss_pred CCCcc
Confidence 66665
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-25 Score=218.18 Aligned_cols=215 Identities=18% Similarity=0.204 Sum_probs=181.3
Q ss_pred EEEccCCccccccchhccCCCCCcEEeC-CCcccCCC-------------------------------------------
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGL-GNYQISDT------------------------------------------- 37 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------- 37 (305)
.|+|++|.+.|.+|++++++++|++|+| ++|.++|.
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 6899999999999999999999999999 77765443
Q ss_pred ---------------------------------cChhccCCCCCCEEEccCccCCc-----------------ccCCCCC
Q 040815 38 ---------------------------------FPSWLGTLPKLNVLILRSNIFYG-----------------VIEEPRT 67 (305)
Q Consensus 38 ---------------------------------~p~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~ 67 (305)
+|..|+++++|++|+|++|.+++ .+|..+.
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 78889999999999999999998 2666652
Q ss_pred CCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccC---------------cccccccEEEccCCccccccc
Q 040815 68 GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYN---------------KIPDILAGIILSNNRFVGAIP 132 (305)
Q Consensus 68 ~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~---------------~~~~~L~~L~ls~n~l~~~~p 132 (305)
+..+++|+.|+|++|.+.+.+|.. |..+++|+.|+++.+..+. ..++.|+.|++++|.++ .+|
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 238999999999999999999954 8999999999988764111 12348999999999999 888
Q ss_pred h--hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCC-CCEEeccCCcccCCCCCCCC-
Q 040815 133 A--SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQGKQ- 208 (305)
Q Consensus 133 ~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~~~- 208 (305)
. .++.+++|+.|+|++|.++ .+| .|+.+++|+.|+|++|.++ .+|..+..+++ |+.|++++|.++ .+|....
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 8 8999999999999999999 788 8999999999999999999 89988999999 999999999998 6665422
Q ss_pred C--CccCCCccCCCCC
Q 040815 209 F--ATFDNTSFDGNSG 222 (305)
Q Consensus 209 ~--~~l~~~~~~~n~~ 222 (305)
. ..+..+.+.+|..
T Consensus 641 ~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKI 656 (876)
T ss_dssp TCSSCEEEEECCSSCT
T ss_pred cccCCCCEEECcCCcC
Confidence 1 2255666666653
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=3.8e-25 Score=208.98 Aligned_cols=218 Identities=19% Similarity=0.212 Sum_probs=167.6
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..|..+ ..+++|++|+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~ 113 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL--SGPKALKHLFFI 113 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT--SSCTTCCEEECT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh--cccccccEeecc
Confidence 579999999998888999999999999999999998889999999999999999999998877776 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCccccccchhhhCCCCCC--EEecCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQ--VLNLQYNNLQ 152 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~--~L~Ls~N~l~ 152 (305)
+|.++ .++...+..+++|+.|+++.+.. ....+++|+.|++++|.+++..|..++.+++|+ .|++++|.++
T Consensus 114 ~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 114 QTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99998 66555588899999999876321 112267899999999999877788888888888 7788877776
Q ss_pred ccCCcc--------------------------------------------------------------------------
Q 040815 153 GLIPSS-------------------------------------------------------------------------- 158 (305)
Q Consensus 153 ~~~p~~-------------------------------------------------------------------------- 158 (305)
+..|..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 554433
Q ss_pred -ccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815 159 -LGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG 222 (305)
Q Consensus 159 -~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 222 (305)
|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|.. ..++.+..+.+.+|..
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 445566666777776666 56666666667777777777666554422 3445555555666543
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.2e-25 Score=208.47 Aligned_cols=218 Identities=20% Similarity=0.189 Sum_probs=158.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+.|++++|.++...+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..+ +.+++|++|+|+
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 131 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLE 131 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCCEEEee
Confidence 468999999997666678999999999999999998888899999999999999999999887776 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc------cCcccccccEEEccCCccccccc----------------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKIPDILAGIILSNNRFVGAIP---------------------- 132 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~~~~L~~L~ls~n~l~~~~p---------------------- 132 (305)
+|.++ .+|...|..+++|+.|+++++.. ....++.|+.|++++|.+++...
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 99999 89988889999999999886321 22346778888888888775322
Q ss_pred -------------------------------------hhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcC
Q 040815 133 -------------------------------------ASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKF 175 (305)
Q Consensus 133 -------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 175 (305)
..+..+++|+.|+|++|.+++.+|..|..+++|+.|+|++|.+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 2244455566666666666655555666666666666666666
Q ss_pred CccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCC
Q 040815 176 AGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 176 ~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 222 (305)
++ +|..+..+++|+.|++++|.+++..+....++.+..+++.+|..
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCC
Confidence 53 34445555666666666666653222223344455555555543
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=9.9e-25 Score=208.85 Aligned_cols=202 Identities=18% Similarity=0.167 Sum_probs=177.8
Q ss_pred CEEEccCCccccccc-hhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCc--ccCCCCCCCCCCCccEE
Q 040815 1 MEAKRSHNLFEGRIP-RSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYG--VIEEPRTGCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~l~~L~~L 77 (305)
++|+|++|.+++.+| ..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.++. ..|..+ ..+++|+.|
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L 485 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTIL 485 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEE
Confidence 579999999998776 689999999999999999998889999999999999999999874 444444 889999999
Q ss_pred EccCCcCcccCChhhhhccchhhhhhhccccc--------------cCcccccccEEEccCCccccccchhhhCCCCCCE
Q 040815 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT--------------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQV 143 (305)
Q Consensus 78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~--------------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 143 (305)
++++|+++ .+|+..|..+++|+.|+++++.. ....++.|+.|++++|.++...+..|..+++|+.
T Consensus 486 ~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 486 DLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 99999999 78888899999999999886321 1345688999999999999554567999999999
Q ss_pred EecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccc-cCCCCCEEeccCCcccCCCCC
Q 040815 144 LNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLV-ELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 144 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~l~~N~l~~~~p~ 205 (305)
|+|++|++++..+..|..+++|++|++++|++++..+..+. .+++|+.+++++|++.|.++.
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999987777789999999999999999988888777 789999999999999998874
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=3.1e-25 Score=192.71 Aligned_cols=199 Identities=24% Similarity=0.213 Sum_probs=142.8
Q ss_pred CEEEccCCccccccchhc--cCCCCCcEEeCCCcccCCCcC----hhccCCCCCCEEEccCccCCcccCCCCCCCCCCCc
Q 040815 1 MEAKRSHNLFEGRIPRSL--INCSKLEFLGLGNYQISDTFP----SWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKL 74 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 74 (305)
++|+|++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|+|++|.+++..+..+ ..+++|
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L 171 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV--RAFPAL 171 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC--CCCTTC
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh--ccCCCC
Confidence 457777777777676666 677777777777777765444 234456777777777777766655555 667777
Q ss_pred cEEEccCCcCccc--CChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccch----hhhCCCCCCEEecCC
Q 040815 75 RIIDLSNNRFSGN--LPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPA----SIANLKGLQVLNLQY 148 (305)
Q Consensus 75 ~~L~L~~n~l~g~--~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~Ls~ 148 (305)
++|++++|++.+. ++... ....++.|++|++++|.++ .++. .+..+++|++|+|++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~-----------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAAL-----------------CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSH 233 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTS-----------------CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTT
T ss_pred CEEECCCCCCccchhhhHHH-----------------hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCC
Confidence 7777777776532 11110 0112556788889999997 3343 357889999999999
Q ss_pred ccccccCCccccCC---CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815 149 NNLQGLIPSSLGNL---TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223 (305)
Q Consensus 149 N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 223 (305)
|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....++.+..+.+.+|+..
T Consensus 234 N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 234 NSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred CCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence 99998878777776 69999999999999 7777664 7899999999999963 44456778888888888763
No 49
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.2e-25 Score=186.51 Aligned_cols=197 Identities=12% Similarity=0.112 Sum_probs=148.5
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcc-cCCCcChhccCCCCCCEEEccC-ccCCcccCCCCCCCCCCCccEEE
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQ-ISDTFPSWLGTLPKLNVLILRS-NIFYGVIEEPRTGCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~ 78 (305)
++|+|++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.++...+..+ ..+++|+.|+
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~L~ 111 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKFLG 111 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCEEe
Confidence 467888888886666677788888888888886 7655556777788888888887 77776655555 6777888888
Q ss_pred ccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCC-ccccccchhhhCCCCCC-EEecCCccccccCC
Q 040815 79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNN-RFVGAIPASIANLKGLQ-VLNLQYNNLQGLIP 156 (305)
Q Consensus 79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p 156 (305)
+++|.++ .+|. |..+++| ..|+.|++++| .+++..+..|..+++|+ .|++++|.++...+
T Consensus 112 l~~n~l~-~lp~--~~~l~~L---------------~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 112 IFNTGLK-MFPD--LTKVYST---------------DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp EEEECCC-SCCC--CTTCCBC---------------CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred CCCCCCc-cccc--ccccccc---------------ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 8888877 4664 4433322 11348999999 99877777799999999 99999999994444
Q ss_pred ccccCCCCCCEEeCCCCc-CCccCccccccC-CCCCEEeccCCcccCCCCCCCCCCccCCCccCCC
Q 040815 157 SSLGNLTNLESLDLSNKK-FAGRIPQQLVEL-TFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGN 220 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n 220 (305)
..|.. ++|++|++++|+ +++..+..+..+ ++|++|++++|.+++ +|.. .+..+..+.+.++
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 44544 899999999995 987667788889 999999999999984 4543 5666666666554
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.2e-25 Score=198.72 Aligned_cols=201 Identities=19% Similarity=0.229 Sum_probs=167.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L~L 79 (305)
++|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.++.... ..+ ..+++|++|++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~--~~l~~L~~L~l 156 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF--SHLTKLQILRV 156 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSC--TTCTTCCEEEE
T ss_pred CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhh--ccCCCCcEEEC
Confidence 579999999998888899999999999999999987666669999999999999999986544 344 78999999999
Q ss_pred cCCc-CcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815 80 SNNR-FSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 80 ~~n~-l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
++|+ +. .++...|..+++|+.|+++.+. .....++.|+.|++++|.+....+..+..+++|+.|++++|.++
T Consensus 157 ~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 157 GNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 9995 55 7777779999999999987632 22334678999999999997443344556899999999999988
Q ss_pred cc-------------------------------CCccccCCCCCCEEeCCCCcCCccCccc-cccCCCCCEEeccCCccc
Q 040815 153 GL-------------------------------IPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 153 ~~-------------------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 200 (305)
+. +|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|+++
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 64 3445678899999999999999 56655 589999999999999999
Q ss_pred CCCCC
Q 040815 201 GPIPQ 205 (305)
Q Consensus 201 ~~~p~ 205 (305)
|.+|.
T Consensus 315 ~~~~~ 319 (353)
T 2z80_A 315 CSCPR 319 (353)
T ss_dssp CCHHH
T ss_pred CcCCC
Confidence 88763
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.5e-24 Score=185.21 Aligned_cols=178 Identities=25% Similarity=0.276 Sum_probs=155.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|..+++|++|++++|.+++..+. +.+++|++|++++|.++.. |..+ ..+++|+.|+++
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l-~~~~--~~l~~L~~L~l~ 108 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSL-PLLG--QTLPALTVLDVS 108 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSC-CCCT--TTCTTCCEEECC
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcC-chhh--ccCCCCCEEECC
Confidence 5799999999988889999999999999999999864432 7899999999999999854 4444 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|+++ .+|...|.. ++.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|.
T Consensus 109 ~N~l~-~l~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 169 (290)
T 1p9a_G 109 FNRLT-SLPLGALRG------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN 169 (290)
T ss_dssp SSCCC-CCCSSTTTT------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT
T ss_pred CCcCc-ccCHHHHcC------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhc
Confidence 99999 777665655 44578888999999977777889999999999999999977667788
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI 203 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 203 (305)
.+++|++|+|++|+++ .+|..+..++.|+.+++++|++.+..
T Consensus 170 ~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 9999999999999999 78888888999999999999998764
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.1e-24 Score=205.73 Aligned_cols=200 Identities=21% Similarity=0.142 Sum_probs=176.9
Q ss_pred CEEEccCCccccc--cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccEE
Q 040815 1 MEAKRSHNLFEGR--IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~L 77 (305)
++|+|++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+ ..+++|+.|
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L 429 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF--LSLEKLLYL 429 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT--TTCTTCCEE
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh--hccccCCEE
Confidence 5799999999976 48899999999999999999975 67889999999999999999988766 344 789999999
Q ss_pred EccCCcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc
Q 040815 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN 150 (305)
Q Consensus 78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 150 (305)
++++|.+.+..| ..+..+++|+.|+++++.. ....++.|+.|++++|.+++..|..+..+++|++|+|++|+
T Consensus 430 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 430 DISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 999999995555 4589999999999876422 23446899999999999998889999999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCCccCccccccCC-CCCEEeccCCcccCCCCC
Q 040815 151 LQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT-FLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~ 205 (305)
+++.+|..+..+++|++|++++|+++ .+|..+..++ +|++|++++|++.+.++.
T Consensus 509 l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 509 LLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99988999999999999999999999 7888898887 599999999999987764
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=2.8e-24 Score=208.97 Aligned_cols=216 Identities=14% Similarity=0.198 Sum_probs=148.6
Q ss_pred EEEccCCccccccchhccCCCC-CcEEeCCCcccCCCcChhccCCC--CCCEEEccCccCCcccCCCC---CCCCCCCcc
Q 040815 2 EAKRSHNLFEGRIPRSLINCSK-LEFLGLGNYQISDTFPSWLGTLP--KLNVLILRSNIFYGVIEEPR---TGCGFSKLR 75 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~~~~~~---~~~~l~~L~ 75 (305)
+|+|++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+. +|+.|+|++|.+++.+|... ....+++|+
T Consensus 599 ~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~ 676 (876)
T 4ecn_A 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676 (876)
T ss_dssp EEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred EEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence 3455555554 44444555554 555555555554 3444444332 25555555555544333211 011334788
Q ss_pred EEEccCCcCcccCChhhhhccchhhhhhhccccc------cCcc-------cccccEEEccCCccccccchhhh--CCCC
Q 040815 76 IIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT------YNKI-------PDILAGIILSNNRFVGAIPASIA--NLKG 140 (305)
Q Consensus 76 ~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~------~~~~-------~~~L~~L~ls~n~l~~~~p~~~~--~l~~ 140 (305)
.|++++|.+. .+|...+..+++|+.|+++.+.. .... ++.|+.|++++|.++ .+|..+. .+++
T Consensus 677 ~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 677 TVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754 (876)
T ss_dssp EEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred EEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence 8888888888 78888777888888888876321 1111 127999999999998 7888886 8899
Q ss_pred CCEEecCCccccccCCccccCCCCCCEEeCCC------CcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCC
Q 040815 141 LQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN------KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 214 (305)
Q Consensus 141 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~ 214 (305)
|+.|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|++++|.+ +.+|... .+.+..
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~ 831 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYI 831 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCE
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCE
Confidence 9999999999986 788888999999999976 778888999999999999999999999 6777752 357777
Q ss_pred CccCCCCCCC
Q 040815 215 TSFDGNSGLC 224 (305)
Q Consensus 215 ~~~~~n~~~c 224 (305)
+++.+|+...
T Consensus 832 LdLs~N~l~~ 841 (876)
T 4ecn_A 832 LDIADNPNIS 841 (876)
T ss_dssp EECCSCTTCE
T ss_pred EECCCCCCCc
Confidence 8888887543
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.4e-24 Score=184.03 Aligned_cols=184 Identities=17% Similarity=0.140 Sum_probs=158.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~ 132 (276)
T 2z62_A 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVA 132 (276)
T ss_dssp SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECC
T ss_pred cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECc
Confidence 589999999998778899999999999999999998888899999999999999999998766555 889999999999
Q ss_pred CCcCcc-cCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCC----EEecCCccccccC
Q 040815 81 NNRFSG-NLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQ----VLNLQYNNLQGLI 155 (305)
Q Consensus 81 ~n~l~g-~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~ 155 (305)
+|.+.+ .+|.. +.. ++.|+.|++++|.+++..+..+..+++|+ .|++++|.+++..
T Consensus 133 ~n~l~~~~l~~~-~~~------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 133 HNLIQSFKLPEY-FSN------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (276)
T ss_dssp SSCCCCCCCCGG-GGG------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred CCccceecCchh-hcc------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence 999983 24543 443 45688888999999987777887777777 8999999999766
Q ss_pred CccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815 156 PSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206 (305)
Q Consensus 156 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 206 (305)
+..+. ..+|++|++++|.+++..+..+..+++|++|++++|++++.+|..
T Consensus 194 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 194 PGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 66554 458999999999999777777889999999999999999988754
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.2e-25 Score=204.42 Aligned_cols=216 Identities=18% Similarity=0.153 Sum_probs=165.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..|.+|.++++|++|++++|++++..|..|+.+++|++|+|++|.++.+... .+++|++|+++
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~L~ 98 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-----PTVNLKHLDLS 98 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-----CCCCCSEEECC
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-----ccCCccEEecc
Confidence 5789999999977778899999999999999999888888999999999999999998854322 57889999999
Q ss_pred CCcCcc-cCChhhhhccchhhhhhhcccccc---Ccc-------------------------------------------
Q 040815 81 NNRFSG-NLPSKSFLCWNAMKIVNARRMMTY---NKI------------------------------------------- 113 (305)
Q Consensus 81 ~n~l~g-~~p~~~~~~l~~L~~l~l~~~~~~---~~~------------------------------------------- 113 (305)
+|.+++ .+|. .|+.+++|+.|+++.+.-. ...
T Consensus 99 ~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 99 FNAFDALPICK-EFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SSCCSSCCCCG-GGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CCccccccchh-hhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 998884 3554 4777777777766541100 000
Q ss_pred --------------------------------------------------------------------cccccEEEccCC
Q 040815 114 --------------------------------------------------------------------PDILAGIILSNN 125 (305)
Q Consensus 114 --------------------------------------------------------------------~~~L~~L~ls~n 125 (305)
.+.|+.|++++|
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n 257 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence 115677777777
Q ss_pred ccccccchhh-----------------------------------------------------hCCCCCCEEecCCcccc
Q 040815 126 RFVGAIPASI-----------------------------------------------------ANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 126 ~l~~~~p~~~-----------------------------------------------------~~l~~L~~L~Ls~N~l~ 152 (305)
.++|.+|..+ ..+++|++|++++|.++
T Consensus 258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence 7776666544 56678888888888888
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCc--cCccccccCCCCCEEeccCCcccCCCCCC--CCCCccCCCccCCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAG--RIPQQLVELTFLEFFNVSDNYLTGPIPQG--KQFATFDNTSFDGNSG 222 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n~~ 222 (305)
+.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++.+|.. ..+..+..+.+.+|..
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l 411 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence 8788888888999999999998886 56677888899999999999998756643 3456677777777754
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.8e-24 Score=189.72 Aligned_cols=213 Identities=18% Similarity=0.178 Sum_probs=167.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++++++++.++ .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 36 ~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 110 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF--SPLRKLQKLYIS 110 (332)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS--TTCTTCCEEECC
T ss_pred CEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh--hCcCCCCEEECC
Confidence 47899999998 677766 4799999999999988778899999999999999999998877666 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc------ccCcccccccEEEccCCcccc--ccchhhhCC--------------
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM------TYNKIPDILAGIILSNNRFVG--AIPASIANL-------------- 138 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~------~~~~~~~~L~~L~ls~n~l~~--~~p~~~~~l-------------- 138 (305)
+|.+. .+|...+ ++|+.|++..+. .....++.|+.|++++|.++. ..+..+..+
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 99999 8887654 678888877532 123447789999999998853 455555444
Q ss_pred ------CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCc
Q 040815 139 ------KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFAT 211 (305)
Q Consensus 139 ------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~ 211 (305)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. ...++.
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 35666777777777666677888888888888888888777777888888888888888888 5554 345566
Q ss_pred cCCCccCCCCCC
Q 040815 212 FDNTSFDGNSGL 223 (305)
Q Consensus 212 l~~~~~~~n~~~ 223 (305)
+..+++.+|...
T Consensus 266 L~~L~l~~N~l~ 277 (332)
T 2ft3_A 266 LQVVYLHTNNIT 277 (332)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCCCC
Confidence 777777777654
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=9.2e-25 Score=204.72 Aligned_cols=221 Identities=21% Similarity=0.236 Sum_probs=181.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+++....+..+..+++|+.|+++
T Consensus 307 ~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 307 QHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp SEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred cEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 47899999988 6665 4688899999999888766554 67888999999999887653111222678889999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc-------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc-
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM-------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ- 152 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~-------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 152 (305)
+|.+. .++.. +..+++|+.|++.++. .....++.|+.|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 382 ~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 382 FNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp SCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence 99888 56655 7788888888877532 12344678999999999999889999999999999999999998
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|.. ..++.+..+++.+|++.|+|+.
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 578899999999999999999999888999999999999999999999876653 5567788889999999999875
No 58
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.1e-24 Score=183.02 Aligned_cols=197 Identities=21% Similarity=0.225 Sum_probs=165.6
Q ss_pred ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcC
Q 040815 5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRF 84 (305)
Q Consensus 5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 84 (305)
+..+.+.... .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 26 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDIS--A--LKELTNLTYLILTGNQL 97 (272)
T ss_dssp HTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCCG--G--GTTCTTCCEEECTTSCC
T ss_pred hcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCch--h--hcCCCCCCEEECCCCcc
Confidence 4455554332 34578999999999999864 33 5788999999999999998752 3 37899999999999999
Q ss_pred cccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815 85 SGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN 164 (305)
Q Consensus 85 ~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 164 (305)
+ .++...|.. ++.|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 98 ~-~~~~~~~~~------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 98 Q-SLPNGVFDK------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp C-CCCTTTTTT------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred C-ccChhHhcC------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 9 666655554 456788889999999877888999999999999999999887778899999
Q ss_pred CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCCC
Q 040815 165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
|++|++++|++++..+..+..+++|++|++++|.+++..|.. ..+..+..+++.+|++.|.|+.
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 999999999999888878899999999999999999877653 5677888899999999999873
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=210.07 Aligned_cols=108 Identities=20% Similarity=0.257 Sum_probs=79.5
Q ss_pred ccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEec
Q 040815 115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNV 194 (305)
Q Consensus 115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 194 (305)
+.++.|++++|.+.+..+..+..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|++|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 34566666666666556666777778888888888888777777888888888888888888777778888888888888
Q ss_pred cCCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815 195 SDNYLTGPIPQG-KQFATFDNTSFDGNSG 222 (305)
Q Consensus 195 ~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 222 (305)
++|.+++..+.. ..+..+..+++.+|..
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 888887555432 3456677777777764
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.2e-23 Score=177.30 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=142.0
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+ ..+++|++|+|+
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 115 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLG 115 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHh--cccCCCCEEEcC
Confidence 579999999998888899999999999999999999888889999999999999999998876666 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.++ .+|...|.. ++.|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+.
T Consensus 116 ~N~l~-~~~~~~~~~------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 176 (251)
T 3m19_A 116 GNQLK-SLPSGVFDR------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176 (251)
T ss_dssp SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCcCC-CcChhHhcc------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHh
Confidence 99999 777665554 45678888999999977777899999999999999999988888899
Q ss_pred CCCCCCEEeCCCCcCCcc
Q 040815 161 NLTNLESLDLSNKKFAGR 178 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~ 178 (305)
.+++|++|++++|.+++.
T Consensus 177 ~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 177 RLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSCCBCTT
T ss_pred CCCCCCEEEeeCCceeCC
Confidence 999999999999999876
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.7e-24 Score=200.75 Aligned_cols=103 Identities=16% Similarity=0.219 Sum_probs=60.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcc-cCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV-IEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~L 79 (305)
++|+|++|++++..|.+|.++++|++|++++|.+++..|..|+.+++|++|++++|.+++. .+..+ ..+++|++|++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L 130 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRI 130 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhh--hccCCccEEEC
Confidence 3566666666655556666666666666666666665555566666666666666666542 22222 55666666666
Q ss_pred cCCcCcccCChhhhhccchhhhhhhc
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNAR 105 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~ 105 (305)
++|.+.+.+|...|..+++|+.|++.
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CCCccccccCHhhhhcccccCeeecc
Confidence 66654345554445555555555543
No 62
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.8e-24 Score=196.50 Aligned_cols=217 Identities=18% Similarity=0.194 Sum_probs=162.9
Q ss_pred CEEEccCCccccccchhc-----cCCCCCcEEeCCCcccCCCcC-hhccCC---CCCCEEEccCccCCcccCCCCCCCCC
Q 040815 1 MEAKRSHNLFEGRIPRSL-----INCSKLEFLGLGNYQISDTFP-SWLGTL---PKLNVLILRSNIFYGVIEEPRTGCGF 71 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~l 71 (305)
++|++++|.++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... + ...+
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~---~-~~~l 323 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML---C-PSKI 323 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---C-CSSC
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc---c-hhhC
Confidence 357777777777777776 6777777777777776 344 333333 45677777776654331 1 1457
Q ss_pred CCccEEEccCCcCcccCChhhhhccchhhhhhhcccccc--------CcccccccEEEccCCccccccchh-hhCCCCCC
Q 040815 72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPDILAGIILSNNRFVGAIPAS-IANLKGLQ 142 (305)
Q Consensus 72 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~~L~~L~ls~n~l~~~~p~~-~~~l~~L~ 142 (305)
++|++|++++|.+++.+|.. +..+++|+.|+++++... ...++.|+.|++++|.+++.+|.. +..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 78888888888887555543 677777887777653211 234678999999999999757654 78889999
Q ss_pred EEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC--CCCCCccCCCccCCC
Q 040815 143 VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFDGN 220 (305)
Q Consensus 143 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~--~~~~~~l~~~~~~~n 220 (305)
.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|. ...+..+..+++.+|
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCC
Confidence 999999999988877664 79999999999999 888888899999999999999994 554 345677888889999
Q ss_pred CCCCCCCC
Q 040815 221 SGLCGKPL 228 (305)
Q Consensus 221 ~~~c~~~~ 228 (305)
++.|+|+.
T Consensus 479 ~~~c~c~~ 486 (520)
T 2z7x_B 479 PWDCSCPR 486 (520)
T ss_dssp CBCCCHHH
T ss_pred CCcccCCc
Confidence 99999864
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.9e-23 Score=167.62 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=147.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--NKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--CCCCCcCEEECC
Confidence 35788888888 566554 5699999999999998777788999999999999999997766555 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.++ .+|...|.. ++.|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.
T Consensus 85 ~n~l~-~~~~~~~~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 85 TNQLQ-SLPNGVFDK------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCcCC-ccCHhHhcC------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 99999 777655554 45678888999999977777789999999999999999977777789
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 206 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 206 (305)
.+++|++|++++|.+.+ .++.|++|+++.|.++|.+|..
T Consensus 146 ~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred cCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 99999999999998764 3567899999999999999863
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.1e-22 Score=179.29 Aligned_cols=206 Identities=18% Similarity=0.210 Sum_probs=117.8
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++ ++. +..+++|++|++++|......+ .+..+++|++|++++|.+....+ +..+++|+.|+++
T Consensus 113 ~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 113 RELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLN 185 (347)
T ss_dssp SEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECT
T ss_pred CEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEcc
Confidence 578889998884 443 7788888888888886544433 47778888888888887765543 2567778888888
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|.+. .++. +..+++|+.+++..+.. ....++.|+.|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 186 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 186 YNQIE-DISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp TSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred CCccc-cccc--ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 77776 4543 55566666665544211 12234455556666655553222 45555555555555555532
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSG 222 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~ 222 (305)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..|.. ..++.+..+.+.+|+.
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 2344555555555555555432 23444555555555555554333321 2233444444444443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3e-24 Score=187.16 Aligned_cols=209 Identities=21% Similarity=0.180 Sum_probs=170.4
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
++++.+.+...+...+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+ + ..+++|++|++++|
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNN 90 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E--TTCTTCCEEECCSS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h--hhcCCCCEEECcCC
Confidence 4566666665555666778899999999999998888899999999999999999987654 3 78999999999999
Q ss_pred cCcccCChhhhhccchhhhhhhccccc---cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccc
Q 040815 83 RFSGNLPSKSFLCWNAMKIVNARRMMT---YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL 159 (305)
Q Consensus 83 ~l~g~~p~~~~~~l~~L~~l~l~~~~~---~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 159 (305)
.++ .++ ..++|+.|+++.+.. ....++.|+.|++++|.+++..+..+..+++|+.|+|++|.+++..+..+
T Consensus 91 ~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 91 YVQ-ELL-----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEE-EEE-----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccc-ccc-----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 998 444 237788888775321 12236789999999999998778889999999999999999998777776
Q ss_pred -cCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815 160 -GNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223 (305)
Q Consensus 160 -~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 223 (305)
..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+....+..+..+++.+|...
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred hhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc
Confidence 4789999999999999855 43 33589999999999999976665555677788888888654
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=9.7e-23 Score=176.84 Aligned_cols=184 Identities=20% Similarity=0.234 Sum_probs=140.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. . +..+++|+.|+++
T Consensus 44 ~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~--~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 44 TTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--A--IAGLQSIKTLDLT 115 (308)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--G--GTTCTTCCEEECT
T ss_pred CEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--h--hcCCCCCCEEECC
Confidence 578999999984 55 68889999999999999976544 889999999999999998752 2 3788999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|.++ .++. +..+++|+.|+++.+.. ....++.|+.|++++|.+++. +. +..+++|+.|++++|.+++..+
T Consensus 116 ~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 116 STQIT-DVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp TSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCC-Cchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh
Confidence 99998 5654 77788888877765321 123456788888888887743 33 7777888888888888875433
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
+..+++|++|++++|++++.. .+..+++|++|++++|++++
T Consensus 191 --l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 677788888888888887544 26777888888888888774
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=195.28 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=127.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+|++|.++...+..+ ..+++|++|+++
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~ 108 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAV 108 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECT
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh--cCcccccccccc
Confidence 578999999988778888999999999999999988777888889999999999999888776666 788899999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccchhhhCCCCC----CEEecCCc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIPASIANLKGL----QVLNLQYN 149 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L----~~L~Ls~N 149 (305)
+|.++ .++...+..+++|+.|+++.+.. ....+++|+.|++++|.+++..+..+..+++| +.|++++|
T Consensus 109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 99888 67665588888888888776321 12235778888888888887777777777777 77888887
Q ss_pred cccccCCccccCCCCCCEEeCCC
Q 040815 150 NLQGLIPSSLGNLTNLESLDLSN 172 (305)
Q Consensus 150 ~l~~~~p~~~~~l~~L~~L~L~~ 172 (305)
.+++..|..+..+ +|+.|++++
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~ 209 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRN 209 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEES
T ss_pred CceecCHHHhccC-cceeEeccc
Confidence 7766555444332 344444333
No 68
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.9e-23 Score=194.52 Aligned_cols=200 Identities=20% Similarity=0.227 Sum_probs=133.8
Q ss_pred CEEEccCCccccccchhc-----cCCC--------------------------CCcEEeCCCcccCCCcChhccCCCCCC
Q 040815 1 MEAKRSHNLFEGRIPRSL-----INCS--------------------------KLEFLGLGNYQISDTFPSWLGTLPKLN 49 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l-----~~l~--------------------------~L~~L~L~~n~l~~~~p~~~~~l~~L~ 49 (305)
++|++++|.++|.+|..+ ..++ +|++|++++|.+.... ....+++|+
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~ 356 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFT 356 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCce
Confidence 468899999998888766 3333 3566666666553211 125778899
Q ss_pred EEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh--hhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815 50 VLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS--KSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127 (305)
Q Consensus 50 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l 127 (305)
+|++++|.+++..+..+ ..+++|+.|++++|+++ .++. ..+.. ++.|+.|++++|.+
T Consensus 357 ~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~~~------------------l~~L~~L~l~~N~l 415 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLK-NFFKVALMTKN------------------MSSLETLDVSLNSL 415 (562)
T ss_dssp EEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCC-BTTHHHHTTTT------------------CTTCCEEECTTSCC
T ss_pred EEECCCCccccchhhhh--cccCCCCEEECCCCCcC-CcccchhhhcC------------------CCCCCEEECCCCcC
Confidence 99999998888766666 78889999999999888 5543 22333 34566666777777
Q ss_pred ccccch-hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-
Q 040815 128 VGAIPA-SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ- 205 (305)
Q Consensus 128 ~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~- 205 (305)
++.+|. .+..+++|+.|++++|.+++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|.
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~ 491 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDG 491 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTT
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHH
Confidence 763443 356667777777777777666555443 56777777777776 566656677777777777777773 443
Q ss_pred -CCCCCccCCCccCCCCCCCCCC
Q 040815 206 -GKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 206 -~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
...++.+..+++.+|++.|+|+
T Consensus 492 ~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 492 VFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp STTTCTTCCCEECCSCCBCCCHH
T ss_pred HHhcCCCCCEEEecCCCcCCCcc
Confidence 2445556666677777777664
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.2e-24 Score=194.42 Aligned_cols=198 Identities=22% Similarity=0.203 Sum_probs=165.5
Q ss_pred cchhccCCC----CCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCC
Q 040815 14 IPRSLINCS----KLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLP 89 (305)
Q Consensus 14 ~~~~l~~l~----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p 89 (305)
+|..+..+. +|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ + ..+++|++|+|++|.++ .+|
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l--~~l~~L~~L~Ls~N~l~-~l~ 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L--ESLSTLRTLDLNNNYVQ-ELL 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--C--TTCTTCCEEECCSSEEE-EEE
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--c--ccCCCCCEEEecCCcCC-CCC
Confidence 455555554 89999999999999888999999999999999999988765 3 78999999999999998 554
Q ss_pred hhhhhccchhhhhhhcccccc---CcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc-CCCCC
Q 040815 90 SKSFLCWNAMKIVNARRMMTY---NKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG-NLTNL 165 (305)
Q Consensus 90 ~~~~~~l~~L~~l~l~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L 165 (305)
. .++|+.|+++++... ...++.|+.|++++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|
T Consensus 97 ~-----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 97 V-----GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp E-----CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred C-----CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 3 377888887763221 12357899999999999988898999999999999999999998888876 79999
Q ss_pred CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCC
Q 040815 166 ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGL 223 (305)
Q Consensus 166 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~ 223 (305)
++|+|++|.+++. |. ...+++|++|++++|.+++..|....+..+..+++.+|...
T Consensus 172 ~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 172 EHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred cEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 9999999999966 33 34589999999999999987776566677888888888653
No 70
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=1.1e-22 Score=180.42 Aligned_cols=179 Identities=25% Similarity=0.255 Sum_probs=136.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhcc-CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLG-TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
+++++++|.++ .+|..+. ..++.|+|++|+|++..+..|. .+++|++|+|++|.|+++.+..+ ..+++|+.|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~--~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF--VPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc--cCCCCCCEEEC
Confidence 36788888888 5676553 5688888888888877777776 88888888888888887766666 77888888888
Q ss_pred cCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccc
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSL 159 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 159 (305)
++|++. .++...|.. ++.|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..|
T Consensus 96 s~N~l~-~~~~~~~~~------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 156 (361)
T 2xot_A 96 SSNHLH-TLDEFLFSD------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156 (361)
T ss_dssp CSSCCC-EECTTTTTT------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred CCCcCC-cCCHHHhCC------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh
Confidence 888888 666555554 3456777788888887778888888888888888888885544444
Q ss_pred ---cCCCCCCEEeCCCCcCCccCccccccCCC--CCEEeccCCcccCCC
Q 040815 160 ---GNLTNLESLDLSNKKFAGRIPQQLVELTF--LEFFNVSDNYLTGPI 203 (305)
Q Consensus 160 ---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~ 203 (305)
..+++|+.|+|++|++++..+..+..++. ++.|++++|++.+..
T Consensus 157 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp C----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 56888888888888888666667777776 377888888887643
No 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.89 E-value=6.8e-23 Score=169.21 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=121.3
Q ss_pred cEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCC-CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815 25 EFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE-PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN 103 (305)
Q Consensus 25 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~ 103 (305)
+.+++++|.++. +|..+ ...+++|+|++|.+++..+. .+ ..+++|+.|+|++|.++ .++...|..
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~--~~l~~L~~L~L~~N~i~-~i~~~~~~~-------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIF--KKLPQLRKINFSNNKIT-DIEEGAFEG-------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCG--GGCTTCCEEECCSSCCC-EECTTTTTT--------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhh--ccCCCCCEEECCCCcCC-EECHHHhCC--------
Confidence 467777777753 56544 23567788888877766432 23 66778888888888877 555444544
Q ss_pred hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815 104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183 (305)
Q Consensus 104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 183 (305)
++.|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+
T Consensus 80 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 80 ----------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp ----------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred ----------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 3456677788888887777778889999999999999998888889999999999999999998888899
Q ss_pred ccCCCCCEEeccCCcccCCCC
Q 040815 184 VELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 184 ~~l~~L~~L~l~~N~l~~~~p 204 (305)
..+++|+.|++++|++++.++
T Consensus 150 ~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTCTTCCEEECCSCCEECSGG
T ss_pred cCCCCCCEEEecCcCCcCCCc
Confidence 999999999999999988765
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=7.5e-22 Score=180.22 Aligned_cols=180 Identities=22% Similarity=0.200 Sum_probs=116.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++ +| .+..+++|++|++++|++++. | ++.+++|++|++++|.+++. ++ ..+++|++|+++
T Consensus 45 ~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~--~~l~~L~~L~L~ 114 (457)
T 3bz5_A 45 TSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DV--TPLTKLTYLNCD 114 (457)
T ss_dssp CEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CC--TTCTTCCEEECC
T ss_pred CEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ec--CCCCcCCEEECC
Confidence 467777777775 34 567777777777777777653 3 66677777777777776654 12 556666666666
Q ss_pred CCcCcccCChhhhhccchhhhhhhcc---------------------cccc----CcccccccEEEccCCccccccchhh
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARR---------------------MMTY----NKIPDILAGIILSNNRFVGAIPASI 135 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~---------------------~~~~----~~~~~~L~~L~ls~n~l~~~~p~~~ 135 (305)
+|.++ .+| +..+++|+.|+++. +... ...++.|+.|++++|.+++ +| +
T Consensus 115 ~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l 187 (457)
T 3bz5_A 115 TNKLT-KLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--V 187 (457)
T ss_dssp SSCCS-CCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--C
T ss_pred CCcCC-eec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--c
Confidence 66666 343 45555555555443 2111 1224566777777777764 34 5
Q ss_pred hCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC
Q 040815 136 ANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI 203 (305)
Q Consensus 136 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 203 (305)
..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|.+++..
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 6677777777777777754 26677778888888887775 45 667777888888888887653
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.7e-23 Score=179.65 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=145.5
Q ss_pred CEEEccCCccccccc----hhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcc--cCCCCCCCCCCCc
Q 040815 1 MEAKRSHNLFEGRIP----RSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV--IEEPRTGCGFSKL 74 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L 74 (305)
++|+|++|.+++..+ ..+..+++|++|++++|.+++..+..|+.+++|++|+|++|.+.+. .+....+..+++|
T Consensus 120 ~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L 199 (310)
T 4glp_A 120 SSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI 199 (310)
T ss_dssp SSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC
T ss_pred CEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC
Confidence 468999999997655 4556899999999999999988889999999999999999998653 2222223678999
Q ss_pred cEEEccCCcCcccCChh---hhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCC---CCCCEEecCC
Q 040815 75 RIIDLSNNRFSGNLPSK---SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANL---KGLQVLNLQY 148 (305)
Q Consensus 75 ~~L~L~~n~l~g~~p~~---~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~Ls~ 148 (305)
++|++++|+++ .++.. .+.. ++.|++|++++|.+++..|..+..+ ++|++|+|++
T Consensus 200 ~~L~Ls~N~l~-~l~~~~~~l~~~------------------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 200 QNLALRNTGME-TPTGVCAALAAA------------------GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp CSCBCCSSCCC-CHHHHHHHHHHH------------------TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred CEEECCCCCCC-chHHHHHHHHhc------------------CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 99999999997 54432 1222 4568888999999998878887777 6999999999
Q ss_pred ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815 149 NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 149 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 9999 6777664 8999999999999963 43 6788999999999999974
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=5.8e-23 Score=191.76 Aligned_cols=193 Identities=21% Similarity=0.215 Sum_probs=137.2
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
.|.++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+ ..+++|++|++++|
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLDLSDN 84 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEECTTS
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEECCCC
Confidence 456667776 5665543 677777777777776667777777777777777777777665555 67777777777777
Q ss_pred cCcccCChhhhhccchhhhhhhccccc-------cCcccccccEEEccCCccccccc-hhhhCCCCCCEEecCCcccccc
Q 040815 83 RFSGNLPSKSFLCWNAMKIVNARRMMT-------YNKIPDILAGIILSNNRFVGAIP-ASIANLKGLQVLNLQYNNLQGL 154 (305)
Q Consensus 83 ~l~g~~p~~~~~~l~~L~~l~l~~~~~-------~~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ 154 (305)
.++ .+++..|..+++|+.|+++++.. ....++.|+.|++++|.+.+.+| ..+..+++|++|++++|.+++.
T Consensus 85 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 85 HLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp CCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred ccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 777 56666677777777777765321 12335678888888887444554 5678888888888888888877
Q ss_pred CCccccCCCCCCEEeCCCCcCCccCccc-cccCCCCCEEeccCCcccCC
Q 040815 155 IPSSLGNLTNLESLDLSNKKFAGRIPQQ-LVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 155 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~ 202 (305)
.|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.+++.
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccc
Confidence 8888888888888888888776 34443 34577888888888888763
No 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=4.1e-22 Score=182.55 Aligned_cols=206 Identities=25% Similarity=0.306 Sum_probs=152.9
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.+++. + .+..+++|++|++++|.+++..| ++.+++|++|++++|.+++.. . +..+++|+.|+++
T Consensus 180 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 180 ERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--T--LASLTNLTDLDLA 251 (466)
T ss_dssp CEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--G--GGGCTTCSEEECC
T ss_pred CEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--h--hhcCCCCCEEECC
Confidence 4678888887743 3 47778888888888888876555 666788888888888877542 2 2667888888888
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|.+. .++. +..+++|+.|+++.+.. ....++.|+.|++++|.+++..+ +..+++|+.|++++|++++..|
T Consensus 252 ~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 252 NNQIS-NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred CCccc-cchh--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 88887 4443 67778888887765321 12346778888888888885444 7788888888888888886655
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 224 (305)
+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| ...++.+..+.+.+|++..
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 67888888999988888854 467788889999999999887776 5566777777777776654
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.4e-21 Score=178.41 Aligned_cols=203 Identities=15% Similarity=0.091 Sum_probs=134.1
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCC--------------
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPR-------------- 66 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------- 66 (305)
++|+|++|.+++. | ++.+++|++|++++|.+++. + ++.+++|++|++++|.+++. ++
T Consensus 67 ~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 67 TKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARN 137 (457)
T ss_dssp SEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTS
T ss_pred CEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCC
Confidence 3455666655542 2 55555555555555555442 2 44555555555555555442 11
Q ss_pred -----CCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccc---cCcccccccEEEccCCccccccchhhhCC
Q 040815 67 -----TGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT---YNKIPDILAGIILSNNRFVGAIPASIANL 138 (305)
Q Consensus 67 -----~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~---~~~~~~~L~~L~ls~n~l~~~~p~~~~~l 138 (305)
.++.+++|+.|++++|...+.++ +..+++|+.|+++.+.. ....++.|+.|++++|.+++. .+..+
T Consensus 138 ~l~~l~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~---~l~~l 211 (457)
T 3bz5_A 138 TLTEIDVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL---DLNQN 211 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC---CCTTC
T ss_pred ccceeccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee---ccccC
Confidence 01344555555555554333442 56677788887765321 133467899999999999965 38899
Q ss_pred CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCC-------CCCEEeccCCcccCCCCCCCCCCc
Q 040815 139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT-------FLEFFNVSDNYLTGPIPQGKQFAT 211 (305)
Q Consensus 139 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-------~L~~L~l~~N~l~~~~p~~~~~~~ 211 (305)
++|+.|++++|++++ +| +..+++|++|++++|++++..+..+..+. +|+.+++++|.+.+.+|. ..+..
T Consensus 212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~ 287 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRK 287 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTT
T ss_pred CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc-ccccc
Confidence 999999999999997 56 88999999999999999987655554443 556777777777777764 35677
Q ss_pred cCCCccCCCCC
Q 040815 212 FDNTSFDGNSG 222 (305)
Q Consensus 212 l~~~~~~~n~~ 222 (305)
+..+++.+|+.
T Consensus 288 L~~L~Ls~n~~ 298 (457)
T 3bz5_A 288 IKELDVTHNTQ 298 (457)
T ss_dssp CCCCCCTTCTT
T ss_pred CCEEECCCCcc
Confidence 88888888874
No 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=5e-22 Score=174.94 Aligned_cols=207 Identities=19% Similarity=0.233 Sum_probs=173.1
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|+++
T Consensus 135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAY 207 (347)
T ss_dssp CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECC
T ss_pred eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc----ccCCCccceeecc
Confidence 579999997664554 48999999999999999976544 7889999999999999987643 3778999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
+|.+. .++. +..+++|+.|++.++.. ....++.|+.|++++|.+++ + ..+..+++|+.|++++|.+++.
T Consensus 208 ~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-- 280 (347)
T 4fmz_A 208 VNQIT-DITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-- 280 (347)
T ss_dssp SSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--
T ss_pred cCCCC-CCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--
Confidence 99998 5554 78889999998876321 13457889999999999985 3 4688999999999999999964
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 222 (305)
..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..| ...++.+..+++.+|+.
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence 458899999999999999999999999999999999999999997766 55677888888888864
No 78
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=8.1e-22 Score=180.60 Aligned_cols=203 Identities=26% Similarity=0.320 Sum_probs=99.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+ +.++++|++|++++|.+++..+ ++.+++|++|++++|.+++..+ + ..+++|++|+++
T Consensus 71 ~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~--~~l~~L~~L~l~ 142 (466)
T 1o6v_A 71 TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--L--KNLTNLNRLELS 142 (466)
T ss_dssp CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCSEEEEE
T ss_pred CEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--H--cCCCCCCEEECC
Confidence 456666666664332 6666666666666666654433 5666666666666666655432 2 455555555555
Q ss_pred CCcCcccCChhhhhccchhhh---------------------hh----------------------hccccc----cCcc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKI---------------------VN----------------------ARRMMT----YNKI 113 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~---------------------l~----------------------l~~~~~----~~~~ 113 (305)
+|.+. .++. +..+++|+. |+ +..+.. ....
T Consensus 143 ~n~l~-~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 219 (466)
T 1o6v_A 143 SNTIS-DISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 219 (466)
T ss_dssp EEEEC-CCGG--GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred CCccC-CChh--hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccc
Confidence 55554 2321 222222222 22 221100 0111
Q ss_pred cccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEe
Q 040815 114 PDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFN 193 (305)
Q Consensus 114 ~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 193 (305)
++.|+.|++++|.+++ + ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 220 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 2334444444444432 1 234444555555555555543322 4555555555555555553322 55556666666
Q ss_pred ccCCcccCCCCCCCCCCccCCCccCCCC
Q 040815 194 VSDNYLTGPIPQGKQFATFDNTSFDGNS 221 (305)
Q Consensus 194 l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 221 (305)
+++|.+++..| ...++.+..+.+.+|.
T Consensus 294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 294 LNENQLEDISP-ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred cCCCcccCchh-hcCCCCCCEEECcCCc
Confidence 66666654332 3344455555555554
No 79
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=8.3e-22 Score=162.67 Aligned_cols=154 Identities=22% Similarity=0.274 Sum_probs=90.5
Q ss_pred EEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhc
Q 040815 26 FLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNAR 105 (305)
Q Consensus 26 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~ 105 (305)
.++++++.++ .+|..+. ++|+.|++++|.+++..+..+ ..+++|+.|+|++|.++ .+++..|..
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~--~~l~~L~~L~Ls~N~i~-~~~~~~~~~---------- 78 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAF--SPYKKLRRIDLSNNQIS-ELAPDAFQG---------- 78 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSS--TTCTTCCEEECCSSCCC-EECTTTTTT----------
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHh--hCCCCCCEEECCCCcCC-CcCHHHhhC----------
Confidence 4445555443 2333221 345555555555554443333 44555555555555555 232222332
Q ss_pred cccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccccc
Q 040815 106 RMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVE 185 (305)
Q Consensus 106 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 185 (305)
++.|+.|++++|.++...+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..+..
T Consensus 79 --------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 79 --------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp --------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred --------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 233444445555555333444566777777777777777777777777778888888888877666666777
Q ss_pred CCCCCEEeccCCcccCCC
Q 040815 186 LTFLEFFNVSDNYLTGPI 203 (305)
Q Consensus 186 l~~L~~L~l~~N~l~~~~ 203 (305)
+++|++|++++|++.+..
T Consensus 151 l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CTTCCEEECCSSCEECSG
T ss_pred CCCCCEEEeCCCCcCCCC
Confidence 778888888888877644
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=6.4e-22 Score=187.29 Aligned_cols=178 Identities=24% Similarity=0.226 Sum_probs=135.4
Q ss_pred EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815 4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83 (305)
Q Consensus 4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 83 (305)
+-++.+++ .+|..+ -+++++|||++|+|++..+..|.++++|++|+|++|.|+++.+..| .++++|++|+|++|+
T Consensus 37 ~c~~~~l~-~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f--~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 37 QCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--QSLSHLSTLILTGNP 111 (635)
T ss_dssp ECTTSCCS-SCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEEECTTCC
T ss_pred ECCCCCcC-ccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh--cCCCCCCEEEccCCc
Confidence 33444566 567554 2578999999999987777788999999999999999988877766 788999999999999
Q ss_pred CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc-cCCccccCC
Q 040815 84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG-LIPSSLGNL 162 (305)
Q Consensus 84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l 162 (305)
++ .+|..+|.+++ +|++|++++|.+++..+..|+++++|++|+|++|.+++ .+|..+..+
T Consensus 112 l~-~l~~~~f~~L~------------------~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l 172 (635)
T 4g8a_A 112 IQ-SLALGAFSGLS------------------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172 (635)
T ss_dssp CC-EECGGGGTTCT------------------TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred CC-CCCHHHhcCCC------------------CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc
Confidence 88 78877776644 46666788888886666678888888888888888865 356777788
Q ss_pred CCCCEEeCCCCcCCccCccccccCCCC----CEEeccCCcccCCCCC
Q 040815 163 TNLESLDLSNKKFAGRIPQQLVELTFL----EFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 163 ~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~l~~N~l~~~~p~ 205 (305)
++|++|++++|++++..+..+..+.++ ..++++.|.++...+.
T Consensus 173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 888888888888887777776655443 3577888877754443
No 81
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=2.9e-21 Score=160.41 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=115.9
Q ss_pred CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815 24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN 103 (305)
Q Consensus 24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~ 103 (305)
-+.++.+++.++ .+|..+ .++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+. .+|...|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~i~~~~~~~-------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSNQLG-ALPVGVFDS-------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT--------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCCCCC-CcChhhccc--------
Confidence 456777777764 455433 3677777777777777666555 66777777777777776 666554443
Q ss_pred hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815 104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183 (305)
Q Consensus 104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 183 (305)
++.|+.|++++|.+++..+..|..+++|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+
T Consensus 87 ----------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 87 ----------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp ----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred ----------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 344666667777777666666778888999999999888 678888888899999999999886666778
Q ss_pred ccCCCCCEEeccCCcccCCCC
Q 040815 184 VELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 184 ~~l~~L~~L~l~~N~l~~~~p 204 (305)
..+++|+.|++++|++++.++
T Consensus 156 ~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 156 DRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTCTTCCEEECTTSCBCTTBG
T ss_pred hCCCCCCEEEeeCCCccCCcc
Confidence 888899999999999887765
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=6.6e-22 Score=161.76 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=138.7
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~ 108 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALN 108 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECC
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcC
Confidence 579999999997777788999999999999999997777778999999999999999998766555 789999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.++ .++...|.. ++.|+.|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 109 ~N~l~-~~~~~~~~~------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------- 162 (208)
T 2o6s_A 109 TNQLQ-SLPDGVFDK------------------LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------- 162 (208)
T ss_dssp SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------
T ss_pred CCcCc-ccCHhHhcc------------------CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------
Confidence 99999 677655554 4567888899999997777778999999999999998774
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTF 188 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 188 (305)
.+++|+.|+++.|.++|.+|..++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4568999999999999999998887654
No 83
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.87 E-value=7.1e-22 Score=175.15 Aligned_cols=180 Identities=19% Similarity=0.185 Sum_probs=146.5
Q ss_pred CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCC-CCCCccEEEccCCcCcccCChhhhhccchhhhh
Q 040815 24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGC-GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIV 102 (305)
Q Consensus 24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l 102 (305)
-+.++++++.++ .+|..+ ...++.|+|++|.+++..+..+ . .+++|+.|+|++|+++ .++...|..
T Consensus 20 ~~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~--~~~l~~L~~L~L~~N~i~-~i~~~~~~~------- 86 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWT--PTRLTNLHSLLLSHNHLN-FISSEAFVP------- 86 (361)
T ss_dssp TTEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSS--SSCCTTCCEEECCSSCCC-EECTTTTTT-------
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhh--hhcccccCEEECCCCcCC-ccChhhccC-------
Confidence 368999999997 477654 3569999999999998876665 5 8999999999999999 677655654
Q ss_pred hhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccc
Q 040815 103 NARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQ 182 (305)
Q Consensus 103 ~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 182 (305)
++.|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..
T Consensus 87 -----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 87 -----------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp -----------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred -----------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 455788889999999777778999999999999999999888999999999999999999999654444
Q ss_pred c---ccCCCCCEEeccCCcccCCCCCC-CCCCc--cCCCccCCCCCCCCCC
Q 040815 183 L---VELTFLEFFNVSDNYLTGPIPQG-KQFAT--FDNTSFDGNSGLCGKP 227 (305)
Q Consensus 183 ~---~~l~~L~~L~l~~N~l~~~~p~~-~~~~~--l~~~~~~~n~~~c~~~ 227 (305)
+ ..+++|+.||+++|.|++..+.. ..++. +..+.+.+||+.|+|.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5 56899999999999999543221 12222 3567899999999985
No 84
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=4.8e-21 Score=158.11 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=132.6
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
+.++++++.++ .+|..+. ++|+.|++++|.|++..+..|..+++|++|+|++|.+++..+..+ ..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECC
Confidence 36788999998 6776654 789999999999988777789999999999999999998877777 889999999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.++ .+|...|.. ++.|+.|++++|.+++..|..|..+++|+.|+|++|.+++..+..|.
T Consensus 89 ~N~l~-~l~~~~f~~------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 89 GNKIT-ELPKSLFEG------------------LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp SSCCC-CCCTTTTTT------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred CCcCC-ccCHhHccC------------------CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence 99999 888776655 44577788999999988888999999999999999999988777899
Q ss_pred CCCCCCEEeCCCCcCCc
Q 040815 161 NLTNLESLDLSNKKFAG 177 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~ 177 (305)
.+++|++|+|++|.+..
T Consensus 150 ~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEEeCCCCcCC
Confidence 99999999999998864
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=7.7e-21 Score=163.53 Aligned_cols=166 Identities=21% Similarity=0.316 Sum_probs=123.2
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+++... +..+++|+.|+++
T Consensus 49 ~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 49 DQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS----LKDLKKLKSLSLE 120 (291)
T ss_dssp CEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG----GTTCTTCCEEECT
T ss_pred cEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh----hccCCCCCEEECC
Confidence 457777777763 33 46677777777777777765443 6777777777777777765421 2667777777777
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|.+. .++. +. .++.|+.|++++|.+++. ..+..+++|+.|++++|.+++..| +.
T Consensus 121 ~n~i~-~~~~--l~------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 121 HNGIS-DING--LV------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp TSCCC-CCGG--GG------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCcCC-CChh--hc------------------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 77776 3321 22 255688888999999854 568889999999999999986544 88
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
.+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 89999999999999985 44 38889999999999999875
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2e-21 Score=162.32 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=142.8
Q ss_pred CEEEccCCc-cccccchhccCCCCCcEEeCCC-cccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCcc---
Q 040815 1 MEAKRSHNL-FEGRIPRSLINCSKLEFLGLGN-YQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLR--- 75 (305)
Q Consensus 1 ~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~--- 75 (305)
++|+|++|+ +++..+.+|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++. |. + ..+++|+
T Consensus 58 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l-p~-~--~~l~~L~~L~ 133 (239)
T 2xwt_C 58 SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF-PD-L--TKVYSTDIFF 133 (239)
T ss_dssp CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC-CC-C--TTCCBCCSEE
T ss_pred cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc-cc-c--cccccccccc
Confidence 579999997 8877777999999999999998 999877778899999999999999999874 43 3 6778887
Q ss_pred EEEccCC-cCcccCChhhhhccchhhhhhhccccccCccccccc-EEEccCCccccccchhhhCCCCCCEEecCCcc-cc
Q 040815 76 IIDLSNN-RFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILA-GIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQ 152 (305)
Q Consensus 76 ~L~L~~n-~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~ 152 (305)
.|++++| .+. .+|...|.. ++.|+ .|++++|.++ .+|......++|+.|++++|. ++
T Consensus 134 ~L~l~~N~~l~-~i~~~~~~~------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 134 ILEITDNPYMT-SIPVNAFQG------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLT 193 (239)
T ss_dssp EEEEESCTTCC-EECTTTTTT------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCC
T ss_pred EEECCCCcchh-hcCcccccc------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcc
Confidence 9999999 888 777766665 44577 7889999998 565554444899999999995 99
Q ss_pred ccCCccccCC-CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCc
Q 040815 153 GLIPSSLGNL-TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNY 198 (305)
Q Consensus 153 ~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 198 (305)
+..+..|..+ ++|++|++++|.++ .+|.. .+++|+.|+++++.
T Consensus 194 ~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 194 VIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred cCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 7777889999 99999999999998 45544 67889999998763
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=2.3e-21 Score=180.60 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=146.7
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.|++ +|..+ +++|++|+|++|.|+ .+| ..+++|++|+|++|.++++ |. + .. +|+.|+++
T Consensus 62 ~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l--~~--~L~~L~Ls 128 (571)
T 3cvr_A 62 SELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL-PE-L--PA--SLKHLDVD 128 (571)
T ss_dssp SEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC-CC-C--CT--TCCEEECC
T ss_pred cEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc-ch-h--hc--CCCEEECC
Confidence 479999999996 77766 489999999999997 577 4579999999999999984 44 4 33 99999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSS 158 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 158 (305)
+|.++ .+|. .+++|+.|+++++. .+...+++|+.|++++|.+++ +|. +. ++|+.|+|++|.|+ .+|.
T Consensus 129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~- 197 (571)
T 3cvr_A 129 NNQLT-MLPE----LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA- 197 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred CCcCC-CCCC----cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-
Confidence 99999 5886 57888888887642 233356789999999999996 776 65 89999999999999 6676
Q ss_pred ccCCCCC-------CEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 159 LGNLTNL-------ESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 159 ~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
+.. +| +.|+|++|.|+ .+|..+..+++|+.|++++|++++.+|.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 654 77 99999999999 6888888899999999999999987664
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.6e-22 Score=173.91 Aligned_cols=216 Identities=17% Similarity=0.181 Sum_probs=139.1
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcC-hhccCCCCCCE-EEccCccCCcccCCCCCCCCCCCccEEE
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP-SWLGTLPKLNV-LILRSNIFYGVIEEPRTGCGFSKLRIID 78 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~~~l~~L~~L~ 78 (305)
++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.++.|+++.+.+..+ ..+++|++|+
T Consensus 33 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f--~~l~~L~~L~ 110 (350)
T 4ay9_X 33 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLL 110 (350)
T ss_dssp SEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB--CCCTTCCEEE
T ss_pred CEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh--hhcccccccc
Confidence 467888888875445577888888888888887765554 45677777664 5666677777766666 7778888888
Q ss_pred ccCCcCcccCChhhhhccchhhhhhhcccc--------ccCcccccccEEEccCCccccccchhhhCCCCCCEEecCC-c
Q 040815 79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMM--------TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQY-N 149 (305)
Q Consensus 79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~--------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N 149 (305)
+++|.+. .+|+..+....++..+++.... .+......++.|++++|.++ .+|.......+|+++++++ |
T Consensus 111 l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 111 ISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCT
T ss_pred ccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCC
Confidence 8888887 6665555555555555554311 11222346778888888887 4555544566788888874 5
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815 150 NLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 150 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 224 (305)
.++...+.+|..+++|++||+++|+|+...+.. +.+|+.|.+.++.--..+|....+..+..+.+ .+++.|
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c 259 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC 259 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence 666444456788888888888888888433333 34455555544432336665555555555544 344444
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.6e-21 Score=169.20 Aligned_cols=201 Identities=17% Similarity=0.185 Sum_probs=162.9
Q ss_pred cCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815 6 SHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS 85 (305)
Q Consensus 6 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (305)
..+.+++.+ .+.++++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ + ..+++|++|++++|.+.
T Consensus 27 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~--~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 27 GKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--L--KNLTKITELELSGNPLK 98 (308)
T ss_dssp TCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCCSCCEEECCSCCCS
T ss_pred CCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--H--ccCCCCCEEEccCCcCC
Confidence 344444333 23468899999999999975 55 68899999999999999987754 3 88999999999999998
Q ss_pred ccCChhhhhccchhhhhhhccccc----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815 86 GNLPSKSFLCWNAMKIVNARRMMT----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN 161 (305)
Q Consensus 86 g~~p~~~~~~l~~L~~l~l~~~~~----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 161 (305)
.++ .+..+++|+.|+++++.. ....++.|+.|++++|.+++..+ +..+++|+.|++++|.+++. +. +..
T Consensus 99 -~~~--~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~ 171 (308)
T 1h6u_A 99 -NVS--AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LAN 171 (308)
T ss_dssp -CCG--GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred -Cch--hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcC
Confidence 665 388899999999876321 23447889999999999985544 88999999999999999964 44 889
Q ss_pred CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815 162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 224 (305)
+++|++|++++|.+++..+ +..+++|++|++++|.+++..| ...++.+..+.+.+|+..+
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 9999999999999985443 8889999999999999996553 4566777888888887644
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=158.29 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=134.6
Q ss_pred CCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815 48 LNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127 (305)
Q Consensus 48 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l 127 (305)
-+.+++++|.++.+ |..+ ...++.|++++|.+++..+...|.. ++.|+.|++++|.+
T Consensus 13 ~~~l~~s~n~l~~i-P~~~----~~~~~~L~L~~N~l~~~~~~~~~~~------------------l~~L~~L~L~~N~i 69 (220)
T 2v70_A 13 GTTVDCSNQKLNKI-PEHI----PQYTAELRLNNNEFTVLEATGIFKK------------------LPQLRKINFSNNKI 69 (220)
T ss_dssp TTEEECCSSCCSSC-CSCC----CTTCSEEECCSSCCCEECCCCCGGG------------------CTTCCEEECCSSCC
T ss_pred CCEeEeCCCCcccC-ccCC----CCCCCEEEcCCCcCCccCchhhhcc------------------CCCCCEEECCCCcC
Confidence 36899999999865 3332 3567999999999994445444544 45678888999999
Q ss_pred ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-
Q 040815 128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG- 206 (305)
Q Consensus 128 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~- 206 (305)
++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|++++|.+++..|..
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 9887889999999999999999999888888999999999999999999888999999999999999999999886754
Q ss_pred CCCCccCCCccCCCCCCCCCCC
Q 040815 207 KQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 207 ~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
..+..+..+.+.+|++.|+|+.
T Consensus 150 ~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTCTTCCEEECCSCCEECSGGG
T ss_pred cCCCCCCEEEecCcCCcCCCch
Confidence 4567788889999999999874
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=5.4e-22 Score=181.02 Aligned_cols=181 Identities=20% Similarity=0.235 Sum_probs=122.6
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCC-------------CEEEccCccCCcccCCCCC
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKL-------------NVLILRSNIFYGVIEEPRT 67 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~~~~~~ 67 (305)
++|++++|.+ |.+|++++++++|++|++++|.+.+.+|..++.+.+| ++|++++|.+++...
T Consensus 14 ~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~---- 88 (454)
T 1jl5_A 14 QEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE---- 88 (454)
T ss_dssp ---------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----
T ss_pred hhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----
Confidence 4689999999 6999999999999999999999999999999988764 999999999987532
Q ss_pred CCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCCCCCCEEe
Q 040815 68 GCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLN 145 (305)
Q Consensus 68 ~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 145 (305)
-.++|+.|++++|.++ .+|.. +.+|+.|+++.+. .+...++.|++|++++|.+++ +| .++.+++|++|+
T Consensus 89 --~~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 89 --LPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp --CCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred --CcCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 1368999999999998 47752 3677777776532 222445788999999998885 67 588888888888
Q ss_pred cCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccC
Q 040815 146 LQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 146 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
+++|++++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++
T Consensus 160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 88888885 55433 477777777777775 45 46667777777777776664
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.3e-22 Score=181.47 Aligned_cols=223 Identities=17% Similarity=0.174 Sum_probs=143.0
Q ss_pred CEEEccCCccccccc----hhccCCCCCcEEeCCCcc---cCCCcChhc-------cCCCCCCEEEccCccCCcc----c
Q 040815 1 MEAKRSHNLFEGRIP----RSLINCSKLEFLGLGNYQ---ISDTFPSWL-------GTLPKLNVLILRSNIFYGV----I 62 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~L~~n~l~~~----~ 62 (305)
++|+|++|.+++..+ ..+..+++|++|+|++|. +++.+|..+ ..+++|++|+|++|.++.. +
T Consensus 35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 114 (386)
T 2ca6_A 35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL 114 (386)
T ss_dssp CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHH
T ss_pred cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHH
Confidence 468888888886533 446778888888888854 334455444 6778888888888888752 2
Q ss_pred CCCCCCCCCCCccEEEccCCcCcccCChh---hhhcc---------chhhhhhhcccccc----------CcccccccEE
Q 040815 63 EEPRTGCGFSKLRIIDLSNNRFSGNLPSK---SFLCW---------NAMKIVNARRMMTY----------NKIPDILAGI 120 (305)
Q Consensus 63 ~~~~~~~~l~~L~~L~L~~n~l~g~~p~~---~~~~l---------~~L~~l~l~~~~~~----------~~~~~~L~~L 120 (305)
+..+ ..+++|++|+|++|.+.+..+.. .+..+ ++|+.|+++.+... ...++.|+.|
T Consensus 115 ~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 115 IDFL--SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHH--HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHH--HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 2233 56778888888888876222211 12222 66777776653211 1124577778
Q ss_pred EccCCcccc-----ccchhhhCCCCCCEEecCCcccc----ccCCccccCCCCCCEEeCCCCcCCcc----Ccccccc--
Q 040815 121 ILSNNRFVG-----AIPASIANLKGLQVLNLQYNNLQ----GLIPSSLGNLTNLESLDLSNKKFAGR----IPQQLVE-- 185 (305)
Q Consensus 121 ~ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~-- 185 (305)
++++|.++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ++..+..
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 888877762 23336677777888888888775 45666677777788888888777754 4555533
Q ss_pred CCCCCEEeccCCcccC----CCCCC--CCCCccCCCccCCCCCCCC
Q 040815 186 LTFLEFFNVSDNYLTG----PIPQG--KQFATFDNTSFDGNSGLCG 225 (305)
Q Consensus 186 l~~L~~L~l~~N~l~~----~~p~~--~~~~~l~~~~~~~n~~~c~ 225 (305)
+++|++|++++|.+++ .+|.. ..++.+..+.+.+|+....
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 7777778887777775 24432 1245666666777765443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=9.6e-23 Score=182.30 Aligned_cols=204 Identities=19% Similarity=0.207 Sum_probs=159.3
Q ss_pred CEEEccCC---ccccccchhc-------cCCCCCcEEeCCCcccCC----CcChhccCCCCCCEEEccCccCCcccCCCC
Q 040815 1 MEAKRSHN---LFEGRIPRSL-------INCSKLEFLGLGNYQISD----TFPSWLGTLPKLNVLILRSNIFYGVIEEPR 66 (305)
Q Consensus 1 ~~L~Ls~n---~l~~~~~~~l-------~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 66 (305)
++|+|++| ++++.+|..+ ..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.++...+..+
T Consensus 63 ~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 142 (386)
T 2ca6_A 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI 142 (386)
T ss_dssp CEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH
T ss_pred cEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHH
Confidence 57899985 4555666555 789999999999999987 477788899999999999999864332222
Q ss_pred C--CCCC---------CCccEEEccCCcCc-ccCCh--hhhhccchhhhhhhccccc-----------cCcccccccEEE
Q 040815 67 T--GCGF---------SKLRIIDLSNNRFS-GNLPS--KSFLCWNAMKIVNARRMMT-----------YNKIPDILAGII 121 (305)
Q Consensus 67 ~--~~~l---------~~L~~L~L~~n~l~-g~~p~--~~~~~l~~L~~l~l~~~~~-----------~~~~~~~L~~L~ 121 (305)
. +..+ ++|++|++++|++. +.++. ..+..+++|+.|++..+.. ....++.|+.|+
T Consensus 143 ~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~ 222 (386)
T 2ca6_A 143 ARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222 (386)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEE
T ss_pred HHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEE
Confidence 0 1223 89999999999997 34442 3466788889888876321 223467899999
Q ss_pred ccCCccc----cccchhhhCCCCCCEEecCCcccccc----CCcccc--CCCCCCEEeCCCCcCCc----cCcccc-ccC
Q 040815 122 LSNNRFV----GAIPASIANLKGLQVLNLQYNNLQGL----IPSSLG--NLTNLESLDLSNKKFAG----RIPQQL-VEL 186 (305)
Q Consensus 122 ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l 186 (305)
+++|.++ +.+|..+..+++|+.|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ ..+
T Consensus 223 Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l 302 (386)
T 2ca6_A 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302 (386)
T ss_dssp CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred CcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC
Confidence 9999996 57888899999999999999999865 566663 48999999999999997 477777 568
Q ss_pred CCCCEEeccCCcccCCCC
Q 040815 187 TFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 187 ~~L~~L~l~~N~l~~~~p 204 (305)
++|++|++++|.+++..+
T Consensus 303 ~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 303 PDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCEEECTTSBSCTTSH
T ss_pred CCceEEEccCCcCCcchh
Confidence 999999999999997654
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.2e-22 Score=180.18 Aligned_cols=58 Identities=12% Similarity=-0.049 Sum_probs=27.7
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcC----hhccCCC-CCCEEEccCccCCc
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFP----SWLGTLP-KLNVLILRSNIFYG 60 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~ 60 (305)
++|++|.+++.+|..+...++|++|+|++|.+++..+ ..|..++ +|++|+|++|.+++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 65 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF 65 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH
Confidence 4455555554444444444445555555555544333 3444444 45555555554443
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.3e-22 Score=178.40 Aligned_cols=223 Identities=16% Similarity=0.095 Sum_probs=165.4
Q ss_pred CEEEccCCccccccc----hhccCCC-CCcEEeCCCcccCCCcChhccCC-----CCCCEEEccCccCCcccCCCC--CC
Q 040815 1 MEAKRSHNLFEGRIP----RSLINCS-KLEFLGLGNYQISDTFPSWLGTL-----PKLNVLILRSNIFYGVIEEPR--TG 68 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~--~~ 68 (305)
++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..+ .+
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTL 104 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHH
Confidence 579999999997766 7888998 99999999999998777777664 999999999999986544322 01
Q ss_pred CCC-CCccEEEccCCcCcccCChhhhhc-----cchhhhhhhcccccc-----------CcccccccEEEccCCcccccc
Q 040815 69 CGF-SKLRIIDLSNNRFSGNLPSKSFLC-----WNAMKIVNARRMMTY-----------NKIPDILAGIILSNNRFVGAI 131 (305)
Q Consensus 69 ~~l-~~L~~L~L~~n~l~g~~p~~~~~~-----l~~L~~l~l~~~~~~-----------~~~~~~L~~L~ls~n~l~~~~ 131 (305)
..+ ++|+.|++++|.++ ..+...+.. ..+|+.|+++++.-. ...+..|+.|++++|.+++..
T Consensus 105 ~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 105 AAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HTSCTTCCEEECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HhCCCCccEEECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 334 79999999999998 555544433 258888888763221 112348999999999998777
Q ss_pred chhhh----CC-CCCCEEecCCcccccc----CCccccC-CCCCCEEeCCCCcCCccCc----cccccCCCCCEEeccCC
Q 040815 132 PASIA----NL-KGLQVLNLQYNNLQGL----IPSSLGN-LTNLESLDLSNKKFAGRIP----QQLVELTFLEFFNVSDN 197 (305)
Q Consensus 132 p~~~~----~l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~l~~N 197 (305)
+..+. .+ ++|+.|+|++|.+++. ++..+.. .++|++|+|++|.+++..+ ..+..+++|++|++++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 65544 44 5999999999999863 4445555 4589999999999987654 33466788999999999
Q ss_pred cccCCCCC--------CCCCCccCCCccCCCCCCC
Q 040815 198 YLTGPIPQ--------GKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 198 ~l~~~~p~--------~~~~~~l~~~~~~~n~~~c 224 (305)
.+.+..+. .....++..+++.+|....
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 86543221 2345567777888887543
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.4e-21 Score=171.31 Aligned_cols=194 Identities=16% Similarity=0.126 Sum_probs=130.3
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCC-cChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDT-FPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
++|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+ ..+++|++|++
T Consensus 73 ~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L 149 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNL 149 (336)
T ss_dssp SEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEEC
T ss_pred eEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEEC
Confidence 3577777777765554 45678888888888887655 66777778888888888887765554444 56788888888
Q ss_pred cCC-cCcccCChhhhhccchhhhhhhcccccc--------Ccccc-cccEEEccCC--ccc-cccchhhhCCCCCCEEec
Q 040815 80 SNN-RFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPD-ILAGIILSNN--RFV-GAIPASIANLKGLQVLNL 146 (305)
Q Consensus 80 ~~n-~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~-~L~~L~ls~n--~l~-~~~p~~~~~l~~L~~L~L 146 (305)
++| .+++......+..+++|+.|++.++..+ ...++ .|+.|++++| .++ +.++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 888 5664212234666777777777654111 12245 7777777777 444 345666677777788888
Q ss_pred CCcc-ccccCCccccCCCCCCEEeCCCCc-CCccCccccccCCCCCEEeccCC
Q 040815 147 QYNN-LQGLIPSSLGNLTNLESLDLSNKK-FAGRIPQQLVELTFLEFFNVSDN 197 (305)
Q Consensus 147 s~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N 197 (305)
++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7777 666666677777778888887774 33222235667777777877777
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.84 E-value=4.5e-20 Score=173.51 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=126.3
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
+|+|++|.+.. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++.. . +..+++|+.|+|++
T Consensus 47 ~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~--l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 47 QIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--S--LKDLKKLKSLSLEH 118 (605)
T ss_dssp CCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--T--STTCTTCCEEECTT
T ss_pred EEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--h--hccCCCCCEEEecC
Confidence 46677777763 33 46677777777777777765444 667777777777777776532 2 36677777777777
Q ss_pred CcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccC
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGN 161 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 161 (305)
|.+. .++. +. .++.|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..
T Consensus 119 N~l~-~l~~--l~------------------~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 119 NGIS-DING--LV------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp SCCC-CCGG--GG------------------GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CCCC-CCcc--cc------------------CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 7776 3332 22 256788999999999865 678999999999999999997655 889
Q ss_pred CCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 162 LTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 162 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
+++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++.
T Consensus 174 l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 99999999999999864 4 588999999999999999864
No 98
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=9.7e-20 Score=166.10 Aligned_cols=200 Identities=23% Similarity=0.305 Sum_probs=102.1
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEE--
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIID-- 78 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~-- 78 (305)
++|+|++|.+++ +| ++.++++|++|++++|++++ +|.. ..+|++|++++|.+++. | .+ ..+++|+.|+
T Consensus 134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~--~~l~~L~~L~l~ 203 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-EL--QNLPFLTAIYAD 203 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CC--TTCTTCCEEECC
T ss_pred CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcC-c-cc--cCCCCCCEEECC
Confidence 456667776664 55 46667777777777766654 3432 13455555555555442 2 11 3444444444
Q ss_pred ------------------ccCCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCC
Q 040815 79 ------------------LSNNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANL 138 (305)
Q Consensus 79 ------------------L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l 138 (305)
+++|.+. .+|. +..+++|+.|+++++. .+...++.|+.|++++|.+++ +|.. +
T Consensus 204 ~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 204 NNSLKKLPDLPLSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred CCcCCcCCCCcCcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcc---c
Confidence 4444444 4442 4555555555555421 122234556666666666553 3332 2
Q ss_pred CCCCEEecCCccccc--cCCccc-------------cCC-CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 139 KGLQVLNLQYNNLQG--LIPSSL-------------GNL-TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 139 ~~L~~L~Ls~N~l~~--~~p~~~-------------~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
++|+.|++++|.+++ .+|..+ ..+ ++|++|++++|++++ +|.. +++|++|++++|.++ .
T Consensus 277 ~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E 351 (454)
T ss_dssp TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence 456666666666554 122111 111 355566666666553 4432 355666666666666 3
Q ss_pred CCCCCCCCccCCCccCCCCCCC
Q 040815 203 IPQGKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 203 ~p~~~~~~~l~~~~~~~n~~~c 224 (305)
+|. .+..+..+++.+|...+
T Consensus 352 lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 352 VPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCC--CCTTCCEEECCSSCCSS
T ss_pred ccc--hhhhccEEECCCCCCCc
Confidence 444 34555566666665544
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.9e-21 Score=170.47 Aligned_cols=211 Identities=17% Similarity=0.157 Sum_probs=169.7
Q ss_pred CEEEccCCccccccchhccCC--CCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcc-cCCCCCCCCCCCccEE
Q 040815 1 MEAKRSHNLFEGRIPRSLINC--SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGV-IEEPRTGCGFSKLRII 77 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L 77 (305)
+.|++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+ ..+++|+.|
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L 123 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNL 123 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEE
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEE
Confidence 46899999887 4566667 8999999999999887665 56799999999999998754 44444 778999999
Q ss_pred EccCCcCcccCChhhhhccchhhhhhhcccccc--------CcccccccEEEccCC-ccccc-cchhhhCCC-CCCEEec
Q 040815 78 DLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY--------NKIPDILAGIILSNN-RFVGA-IPASIANLK-GLQVLNL 146 (305)
Q Consensus 78 ~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~--------~~~~~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~L 146 (305)
++++|.+++..+. .+..+++|+.|++.++..+ ...+++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 9999999866664 4778999999999875322 223678999999999 99865 678889999 9999999
Q ss_pred CCc--ccc-ccCCccccCCCCCCEEeCCCCc-CCccCccccccCCCCCEEeccCCcccCCCCC----CCCCCccCCCccC
Q 040815 147 QYN--NLQ-GLIPSSLGNLTNLESLDLSNKK-FAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ----GKQFATFDNTSFD 218 (305)
Q Consensus 147 s~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~----~~~~~~l~~~~~~ 218 (305)
++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..+. ...++.+..+++.
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEecc
Confidence 999 555 4567778889999999999999 787888889999999999999995 22222 2345666777777
Q ss_pred CC
Q 040815 219 GN 220 (305)
Q Consensus 219 ~n 220 (305)
||
T Consensus 281 ~~ 282 (336)
T 2ast_B 281 GI 282 (336)
T ss_dssp TS
T ss_pred Cc
Confidence 76
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.83 E-value=2.9e-20 Score=150.08 Aligned_cols=130 Identities=20% Similarity=0.287 Sum_probs=72.6
Q ss_pred cEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCC-CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815 25 EFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEE-PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN 103 (305)
Q Consensus 25 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~ 103 (305)
+++++++|.++ .+|..+. .+|++|++++|.+++..+. .+ ..+++|++|+|++|.+++..| ..|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~~-------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLF--GRLPHLVKLELKRNQLTGIEP-NAFEG-------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSG--GGCTTCCEEECCSSCCCCBCT-TTTTT--------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccc--ccCCCCCEEECCCCCCCCcCH-hHcCC--------
Confidence 56677777764 4555442 2677777777777655443 23 566777777777776662222 22222
Q ss_pred hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCcc
Q 040815 104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGR 178 (305)
Q Consensus 104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 178 (305)
++.|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.+.+.
T Consensus 77 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 77 ----------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp ----------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred ----------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 22233344444444444444455556666666666666655566666666666666666666544
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.4e-19 Score=150.13 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=130.7
Q ss_pred CCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCc
Q 040815 47 KLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNR 126 (305)
Q Consensus 47 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~ 126 (305)
.-+.++.+++.++.+. ..+ .++|+.|+|++|.++ .++...|.. ++.|+.|++++|.
T Consensus 20 s~~~v~c~~~~l~~ip-~~~----~~~L~~L~Ls~n~i~-~~~~~~~~~------------------l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVP-AGI----PTNAQILYLHDNQIT-KLEPGVFDS------------------LINLKELYLGSNQ 75 (229)
T ss_dssp ETTEEECTTSCCSSCC-SCC----CTTCSEEECCSSCCC-CCCTTTTTT------------------CTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccC-CCC----CCCCCEEEcCCCccC-ccCHHHhhC------------------ccCCcEEECCCCC
Confidence 4678999999987653 222 389999999999999 454444554 4567888899999
Q ss_pred cccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-
Q 040815 127 FVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ- 205 (305)
Q Consensus 127 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~- 205 (305)
+++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++..+.
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98666677899999999999999999877778899999999999999999 8899999999999999999999965543
Q ss_pred CCCCCccCCCccCCCCCCCCCC
Q 040815 206 GKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 206 ~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
...+..+..+.+.+|++.|+|+
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 2456778888999999999986
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=5.1e-20 Score=158.40 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=149.1
Q ss_pred ccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcC
Q 040815 5 RSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRF 84 (305)
Q Consensus 5 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l 84 (305)
+..+.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ + ..+++|+.|++++|.+
T Consensus 31 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l--~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 31 LKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--L--ANLKNLGWLFLDENKV 102 (291)
T ss_dssp TTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEECCSSCC
T ss_pred hcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--c--ccCCCCCEEECCCCcC
Confidence 4445555332 235689999999999999754 4 48889999999999999988754 3 7899999999999999
Q ss_pred cccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815 85 SGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN 164 (305)
Q Consensus 85 ~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 164 (305)
+ .++. +.. ++.|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++
T Consensus 103 ~-~~~~--l~~------------------l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 157 (291)
T 1h6t_A 103 K-DLSS--LKD------------------LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK 157 (291)
T ss_dssp C-CGGG--GTT------------------CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred C-CChh--hcc------------------CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCC
Confidence 8 4543 332 56688899999999853 4688999999999999999965 56899999
Q ss_pred CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCCCC
Q 040815 165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSGLC 224 (305)
Q Consensus 165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 224 (305)
|++|++++|.+++..+ +..+++|++|++++|.+++ +|....+..+..+.+.+|+..+
T Consensus 158 L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 158 LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred CCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccC
Confidence 9999999999996554 8899999999999999985 4555667778888888886543
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=4.8e-20 Score=156.21 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=140.0
Q ss_pred EEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCC
Q 040815 3 AKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNN 82 (305)
Q Consensus 3 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 82 (305)
+++++|.+++ ++ .+.++++|++|++++|.++. ++ .+..+++|++|+|++|.+++..+ + ..+++|+.|++++|
T Consensus 24 l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l--~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 24 QNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--L--KDLTKLEELSVNRN 95 (263)
T ss_dssp HHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--G--TTCSSCCEEECCSS
T ss_pred HHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--h--ccCCCCCEEECCCC
Confidence 4678888884 44 67889999999999999974 55 68899999999999999988765 3 78999999999999
Q ss_pred cCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCC
Q 040815 83 RFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNL 162 (305)
Q Consensus 83 ~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 162 (305)
+++ .+|.. . .+.|+.|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+
T Consensus 96 ~l~-~l~~~--~-------------------~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l 149 (263)
T 1xeu_A 96 RLK-NLNGI--P-------------------SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFL 149 (263)
T ss_dssp CCS-CCTTC--C-------------------CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGC
T ss_pred ccC-CcCcc--c-------------------cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccC
Confidence 998 56541 1 1568999999999985 44 589999999999999999964 4 68899
Q ss_pred CCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 163 TNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 163 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
++|++|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 150 ~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999999999966 6788999999999999999865
No 104
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.4e-19 Score=168.84 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=41.3
Q ss_pred CCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCcc
Q 040815 139 KGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSF 217 (305)
Q Consensus 139 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~ 217 (305)
++|+.|+|++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|. ...++.+..+++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 445555666665553 33 23455666666666665 3444 3456666666666666 4443 233445555566
Q ss_pred CCCCC
Q 040815 218 DGNSG 222 (305)
Q Consensus 218 ~~n~~ 222 (305)
.+|+.
T Consensus 292 ~~N~l 296 (622)
T 3g06_A 292 EGNPL 296 (622)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 66654
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.7e-19 Score=169.85 Aligned_cols=120 Identities=25% Similarity=0.337 Sum_probs=86.9
Q ss_pred CCccEEEccCCcCcccCChhhhhccchhhhhhhccc--cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCc
Q 040815 72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM--MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYN 149 (305)
Q Consensus 72 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~--~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 149 (305)
++|+.|++++|.++ .+|.. +++|+.|++.++ ..+...+++|+.|++++|.+++ +| ..+++|+.|+|++|
T Consensus 181 ~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 181 SGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN 251 (622)
T ss_dssp TTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence 44444555555444 33321 233444443331 1222335779999999999984 56 45689999999999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 150 NLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 150 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
.++ .+|. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 252 ~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 252 RLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 999 5665 6789999999999999 8899999999999999999999987664
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=8.9e-20 Score=160.95 Aligned_cols=212 Identities=13% Similarity=0.050 Sum_probs=158.5
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccC-CCCCCCCCCCccE-EE
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIE-EPRTGCGFSKLRI-ID 78 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~l~~L~~-L~ 78 (305)
++++.++++++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.++ ..| .++++++. ++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f--~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB--CSCTTCCEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh--hcchhhhhhhc
Confidence 35788899999 788766 4789999999999986656689999999999999999876554 344 77888775 66
Q ss_pred ccCCcCcccCChhhhhccchhhhhhhcccccc------CcccccccEEEccC-CccccccchhhhCCC-CCCEEecCCcc
Q 040815 79 LSNNRFSGNLPSKSFLCWNAMKIVNARRMMTY------NKIPDILAGIILSN-NRFVGAIPASIANLK-GLQVLNLQYNN 150 (305)
Q Consensus 79 L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~------~~~~~~L~~L~ls~-n~l~~~~p~~~~~l~-~L~~L~Ls~N~ 150 (305)
++.|++. .+++..|..+++|+.|++.++... ......+..+++.+ +.+....+..|..+. .++.|+|++|+
T Consensus 87 ~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 7789999 888888999999999998763211 11234567788865 567655555666664 68999999999
Q ss_pred ccccCCccccCCCCCCEEeCCC-CcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCC
Q 040815 151 LQGLIPSSLGNLTNLESLDLSN-KKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNS 221 (305)
Q Consensus 151 l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~ 221 (305)
++.. |.......+|++|++++ |.++...++.|..+++|++||+++|+|+ .+|.. .+..+..+...++.
T Consensus 166 i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~-~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 166 IQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY-GLENLKKLRARSTY 234 (350)
T ss_dssp CCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS-SCTTCCEEECTTCT
T ss_pred ccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh-hhccchHhhhccCC
Confidence 9954 44444567899999985 6666444457899999999999999999 45543 34555555444443
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=3.1e-19 Score=144.64 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=126.7
Q ss_pred cCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815 19 INCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA 98 (305)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~ 98 (305)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++... . +..+++|++|++++|.+++..+.. +..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~--- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN--P--ISGLSNLERLRIMGKDVTSDKIPN-LSG--- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG--G--GTTCTTCCEEEEECTTCBGGGSCC-CTT---
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch--h--hhcCCCCCEEEeECCccCcccChh-hcC---
Confidence 56789999999999997 456 6889999999999999776442 3 377999999999999998545533 332
Q ss_pred hhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcc-ccccCCccccCCCCCCEEeCCCCcCCc
Q 040815 99 MKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQGLIPSSLGNLTNLESLDLSNKKFAG 177 (305)
Q Consensus 99 L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~ 177 (305)
++.|+.|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus 111 ---------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 111 ---------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ---------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred ---------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 4568888899999998889999999999999999998 65 556 68999999999999999985
Q ss_pred cCccccccCCCCCEEeccCCcccC
Q 040815 178 RIPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 178 ~~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
++ .+..+++|++|++++|++.+
T Consensus 174 -~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 174 -YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -CT-TGGGCSSCCEEEECBC----
T ss_pred -hH-HhccCCCCCEEEeeCcccCC
Confidence 44 68899999999999999864
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=6.8e-20 Score=147.93 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=123.4
Q ss_pred CEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh-hhhhccchhhhhhhccccccCcccccccEEEccCCcc
Q 040815 49 NVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS-KSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRF 127 (305)
Q Consensus 49 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l 127 (305)
+++++++|.++.+ |..+ ..+|+.|++++|.+. .++. ..|.. ++.|+.|++++|.+
T Consensus 11 ~~l~~s~~~l~~i-p~~~----~~~l~~L~l~~n~i~-~~~~~~~~~~------------------l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDI----PLHTTELLLNDNELG-RISSDGLFGR------------------LPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTSCCSSC-CSCC----CTTCSEEECCSCCCC-SBCCSCSGGG------------------CTTCCEEECCSSCC
T ss_pred CEEEcCCCCcCcC-ccCC----CCCCCEEECCCCcCC-ccCCcccccc------------------CCCCCEEECCCCCC
Confidence 7899999999755 3332 248999999999998 5553 33443 45678888999999
Q ss_pred ccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCC
Q 040815 128 VGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK 207 (305)
Q Consensus 128 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~ 207 (305)
++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|+++|.++...
T Consensus 67 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp CCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred CCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence 98889999999999999999999999888889999999999999999999999999999999999999999998876421
Q ss_pred CCCccCCCccCCCCCCCCCC
Q 040815 208 QFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 208 ~~~~l~~~~~~~n~~~c~~~ 227 (305)
....+....+.++...|..|
T Consensus 147 ~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 147 FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp HHHHHHHHCCSGGGCBBCSS
T ss_pred HHHHHHHcCCCCCCCCCCCC
Confidence 11112222344555555544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.7e-19 Score=169.66 Aligned_cols=183 Identities=19% Similarity=0.264 Sum_probs=150.6
Q ss_pred EccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCc
Q 040815 4 KRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNR 83 (305)
Q Consensus 4 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~ 83 (305)
.++.+.+.+..+ +..+.+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC
Confidence 355566664433 4678999999999999975 44 58899999999999999988765 3789999999999999
Q ss_pred CcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCC
Q 040815 84 FSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLT 163 (305)
Q Consensus 84 l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 163 (305)
+. .+|. +.. ++.|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..++
T Consensus 99 l~-~l~~--l~~------------------l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~ 153 (605)
T 1m9s_A 99 IK-DLSS--LKD------------------LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT 153 (605)
T ss_dssp CC-CCTT--STT------------------CTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred CC-CChh--hcc------------------CCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccC
Confidence 98 5552 332 5668889999999985 3 4588999999999999999965 5689999
Q ss_pred CCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCCCCCCccCCCccCCCCC
Q 040815 164 NLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 164 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~ 222 (305)
+|+.|+|++|.+++..| +..+++|+.|+|++|.+++ +|....+..+..+.+.+|+.
T Consensus 154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEE
T ss_pred CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcC
Confidence 99999999999997666 8899999999999999996 46666677788888888764
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=7.8e-22 Score=184.34 Aligned_cols=180 Identities=21% Similarity=0.234 Sum_probs=131.8
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcc-------------cCCCcChhccCCCCCCEEE-ccCccCCcccCC---
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQ-------------ISDTFPSWLGTLPKLNVLI-LRSNIFYGVIEE--- 64 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~~~--- 64 (305)
.|+|++|+++ .+|..++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+......
T Consensus 353 ~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~ 431 (567)
T 1dce_A 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 431 (567)
T ss_dssp SCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred eccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhh
Confidence 4677777776 677778888888888876664 4456666677777777776 454433211000
Q ss_pred --CCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCC
Q 040815 65 --PRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQ 142 (305)
Q Consensus 65 --~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 142 (305)
.+.......|+.|+|++|.++ .+|. +.. ++.|+.|++++|.++ .+|..++.+++|+
T Consensus 432 ~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 432 ENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQ------------------LLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HHHHHHHHHTTCSEEECTTSCCS-SCCC--GGG------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred cccccccCccCceEEEecCCCCC-CCcC--ccc------------------cccCcEeecCccccc-ccchhhhcCCCCC
Confidence 000001125788888888888 5764 443 445778889999998 7888999999999
Q ss_pred EEecCCccccccCCccccCCCCCCEEeCCCCcCCccC-ccccccCCCCCEEeccCCcccCCCCCC
Q 040815 143 VLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRI-PQQLVELTFLEFFNVSDNYLTGPIPQG 206 (305)
Q Consensus 143 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~l~~N~l~~~~p~~ 206 (305)
.|+|++|.+++ +| .++.+++|++|+|++|.+++.. |..+..+++|+.|++++|++++.+|..
T Consensus 490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999999986 56 7889999999999999999776 888999999999999999998776643
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=2.5e-20 Score=170.14 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=31.7
Q ss_pred CEEEccCCccccc----cchhccCCCCCcEEeCCCcccCCCcChhcc-----CCCCCCEEEccCccCCc
Q 040815 1 MEAKRSHNLFEGR----IPRSLINCSKLEFLGLGNYQISDTFPSWLG-----TLPKLNVLILRSNIFYG 60 (305)
Q Consensus 1 ~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~ 60 (305)
++|+|++|++++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.
T Consensus 145 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred eEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 3566666666653 244455556666666666665433222222 23455555555555543
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=7.2e-21 Score=173.78 Aligned_cols=200 Identities=18% Similarity=0.102 Sum_probs=140.6
Q ss_pred CEEEccCCccccccchhcc-----CCCCCcEEeCCCcccCCC----cChhccCCCCCCEEEccCccCCcccCCCCC--C-
Q 040815 1 MEAKRSHNLFEGRIPRSLI-----NCSKLEFLGLGNYQISDT----FPSWLGTLPKLNVLILRSNIFYGVIEEPRT--G- 68 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~- 68 (305)
++|+|++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++......+. +
T Consensus 116 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 195 (461)
T 1z7x_W 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh
Confidence 5799999998865444333 356899999999998864 355667789999999999988654222210 0
Q ss_pred CCCCCccEEEccCCcCccc----CChhhhhccchhhhhhhccccc-----------cCcccccccEEEccCCccccc---
Q 040815 69 CGFSKLRIIDLSNNRFSGN----LPSKSFLCWNAMKIVNARRMMT-----------YNKIPDILAGIILSNNRFVGA--- 130 (305)
Q Consensus 69 ~~l~~L~~L~L~~n~l~g~----~p~~~~~~l~~L~~l~l~~~~~-----------~~~~~~~L~~L~ls~n~l~~~--- 130 (305)
...++|+.|++++|.+++. ++ ..+..+++|+.|+++.+.. ....++.|+.|++++|.+++.
T Consensus 196 ~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 274 (461)
T 1z7x_W 196 DSPCQLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274 (461)
T ss_dssp HSCCCCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred cCCCCceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence 1356899999999988732 33 3366778888888776321 112357889999999988854
Q ss_pred -cchhhhCCCCCCEEecCCccccccCCcccc-----CCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815 131 -IPASIANLKGLQVLNLQYNNLQGLIPSSLG-----NLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 131 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 567777788899999998888754443332 235788888888887754 4555666777888888888776
Q ss_pred C
Q 040815 201 G 201 (305)
Q Consensus 201 ~ 201 (305)
+
T Consensus 355 ~ 355 (461)
T 1z7x_W 355 D 355 (461)
T ss_dssp H
T ss_pred c
Confidence 4
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.8e-18 Score=143.88 Aligned_cols=144 Identities=23% Similarity=0.270 Sum_probs=122.4
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|+|++|.+++..+. .. ++|+.|+++
T Consensus 44 ~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~----~~-~~L~~L~L~ 114 (263)
T 1xeu_A 44 QNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI----PS-ACLSRLFLD 114 (263)
T ss_dssp SEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC----CC-SSCCEEECC
T ss_pred cEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc----cc-CcccEEEcc
Confidence 57999999998 566 78999999999999999987554 89999999999999999875322 22 899999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
+|+++ .++. +.. ++.|+.|++++|.+++. + .+..+++|+.|++++|++++. ..+.
T Consensus 115 ~N~l~-~~~~--l~~------------------l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 115 NNELR-DTDS--LIH------------------LKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp SSCCS-BSGG--GTT------------------CTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred CCccC-CChh--hcC------------------cccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhc
Confidence 99998 4542 333 55688889999999854 4 688999999999999999976 6689
Q ss_pred CCCCCCEEeCCCCcCCcc
Q 040815 161 NLTNLESLDLSNKKFAGR 178 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~ 178 (305)
.+++|+.|++++|.+++.
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 999999999999999855
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=138.70 Aligned_cols=132 Identities=21% Similarity=0.331 Sum_probs=113.9
Q ss_pred ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
-+.+++++|.++ .+|... ++.++.|++++|.++ .+|..|..+++|+.|+|++|.+++
T Consensus 12 ~~~l~~~~~~l~-~ip~~~---------------------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~ 68 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKGI---------------------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST 68 (193)
T ss_dssp TTEEECTTSCCS-SCCSCC---------------------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCEEEcCCCCCC-cCCCCC---------------------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE
Confidence 367899999988 888642 346889999999998 788899999999999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC-CCCCCccCCCccCCCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKPL 228 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~~ 228 (305)
..+.+|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+. ...+..+..+.+.+|++.|+|..
T Consensus 69 i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 69 LSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred eCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 8888899999999999999999988888899999999999999999965543 24567788888999999999864
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.6e-18 Score=161.42 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=134.6
Q ss_pred CEEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 1 MEAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
++|+|++|.|+ .+| ..+++|++|++++|+|++ +|. +.. +|++|+|++|.++++. . .+++|+.|+++
T Consensus 83 ~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp-~-----~l~~L~~L~Ls 148 (571)
T 3cvr_A 83 TVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLP-E-----LPALLEYINAD 148 (571)
T ss_dssp SEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCC-C-----CCTTCCEEECC
T ss_pred CEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCC-C-----cCccccEEeCC
Confidence 57999999999 677 458999999999999987 776 655 9999999999998843 3 47899999999
Q ss_pred CCcCcccCChhhhhccchhhhhhhcccc--ccCcccccccEEEccCCccccccchhhhCCCCC-------CEEecCCccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMM--TYNKIPDILAGIILSNNRFVGAIPASIANLKGL-------QVLNLQYNNL 151 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~N~l 151 (305)
+|.++ .+|. .+++|+.|+++++. .+....++|+.|++++|.++ .+|. +.. +| +.|+|++|.|
T Consensus 149 ~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 149 NNQLT-MLPE----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred CCccC-cCCC----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 99999 5886 56788888887642 12223378999999999999 7776 654 77 9999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcCCccCccccccCC
Q 040815 152 QGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT 187 (305)
Q Consensus 152 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 187 (305)
+ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9 6788888899999999999999999998877654
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=4.4e-18 Score=134.15 Aligned_cols=134 Identities=24% Similarity=0.227 Sum_probs=82.7
Q ss_pred CCCCCcEEeCCCcccC-CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815 20 NCSKLEFLGLGNYQIS-DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA 98 (305)
Q Consensus 20 ~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~ 98 (305)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|+.|++++|.+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~N~l~~------------ 85 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL--PKLPKLKKLELSENRIFG------------ 85 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC--CCCSSCCEEEEESCCCCS------------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh--ccCCCCCEEECcCCcCch------------
Confidence 3466777777777776 45666666677777777777776654 222 556666666666666653
Q ss_pred hhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccC-CccccCCCCCCEEeCCCCcCCc
Q 040815 99 MKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLI-PSSLGNLTNLESLDLSNKKFAG 177 (305)
Q Consensus 99 L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~ 177 (305)
.+|..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++
T Consensus 86 -------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 86 -------------------------------GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp -------------------------------CCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred -------------------------------HHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 33444445566666666666666421 1456666666666666666664
Q ss_pred cCc---cccccCCCCCEEeccCCccc
Q 040815 178 RIP---QQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 178 ~~p---~~~~~l~~L~~L~l~~N~l~ 200 (305)
..+ ..+..+++|++|++++|.+.
T Consensus 135 ~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 135 LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hHHHHHHHHHhCccCcEecCCCCChh
Confidence 433 35666666777777766665
No 117
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.3e-19 Score=170.56 Aligned_cols=178 Identities=19% Similarity=0.191 Sum_probs=109.2
Q ss_pred EEEccCCccccccchhccCCCCCcE-----EeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccE
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEF-----LGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRI 76 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~-----L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 76 (305)
.|+|.+|.+.. .+..+.....|+. +++..|.+. ..++.|..+++|+.|+|++|.+..+ +... ..+++|+.
T Consensus 177 ~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~l~~L~~ 251 (727)
T 4b8c_D 177 KIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNI-SANI--FKYDFLTR 251 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCSCC-CGGG--GGCCSCSC
T ss_pred eEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCC-Chhh--cCCCCCCE
Confidence 46677777764 3433323332322 233344443 4577788889999999999988744 3333 57889999
Q ss_pred EEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC
Q 040815 77 IDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP 156 (305)
Q Consensus 77 L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 156 (305)
|+|++|.++ .+|.. |.. ++.|+.|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|
T Consensus 252 L~Ls~N~l~-~lp~~-~~~------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp 309 (727)
T 4b8c_D 252 LYLNGNSLT-ELPAE-IKN------------------LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP 309 (727)
T ss_dssp CBCTTSCCS-CCCGG-GGG------------------GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC
T ss_pred EEeeCCcCc-ccChh-hhC------------------CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC
Confidence 999999998 88864 443 455778889999998 78989999999999999999997 778
Q ss_pred ccccCCCCCCEEeCCCCcCCccCccccccCCC-CCEEeccCCcccCCCCCC
Q 040815 157 SSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-LEFFNVSDNYLTGPIPQG 206 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~l~~N~l~~~~p~~ 206 (305)
..|+.+++|++|+|++|.+++.+|..+..+.. +..+++++|.++|.+|..
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 88999999999999999999888887754321 223667777777777653
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.5e-18 Score=137.77 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=126.3
Q ss_pred cCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEc
Q 040815 43 GTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIIL 122 (305)
Q Consensus 43 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~l 122 (305)
..+++|+.|++++|.++... . +..+++|++|++++|.+. .++. +.. ++.|+.|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~--l~~l~~L~~L~l~~n~~~-~~~~--l~~------------------l~~L~~L~l 95 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--G--IEYAHNIKDLTINNIHAT-NYNP--ISG------------------LSNLERLRI 95 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--T--GGGCTTCSEEEEESCCCS-CCGG--GTT------------------CTTCCEEEE
T ss_pred hhcCCccEEeccCCCccChH--H--HhcCCCCCEEEccCCCCC-cchh--hhc------------------CCCCCEEEe
Confidence 56789999999999998543 2 377899999999999776 4431 332 556888999
Q ss_pred cCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCc-CCccCccccccCCCCCEEeccCCcccC
Q 040815 123 SNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKK-FAGRIPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 123 s~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 9999998788899999999999999999998888899999999999999998 55 666 68899999999999999985
Q ss_pred CCCCCCCCCccCCCccCCCCC
Q 040815 202 PIPQGKQFATFDNTSFDGNSG 222 (305)
Q Consensus 202 ~~p~~~~~~~l~~~~~~~n~~ 222 (305)
++....++.+..+.+.+|+.
T Consensus 174 -~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 174 -YRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp -CTTGGGCSSCCEEEECBC--
T ss_pred -hHHhccCCCCCEEEeeCccc
Confidence 45555677788888888863
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=136.66 Aligned_cols=131 Identities=22% Similarity=0.223 Sum_probs=98.8
Q ss_pred CEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccc
Q 040815 49 NVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFV 128 (305)
Q Consensus 49 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~ 128 (305)
+++++++|.++.+. ..+ .++|+.|++++|.++ .+|. .|.. ++.|+.|++++|.++
T Consensus 13 ~~l~~~~~~l~~ip-~~~----~~~l~~L~L~~n~i~-~ip~-~~~~------------------l~~L~~L~Ls~N~i~ 67 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KGI----PRDVTELYLDGNQFT-LVPK-ELSN------------------YKHLTLIDLSNNRIS 67 (193)
T ss_dssp TEEECTTSCCSSCC-SCC----CTTCCEEECCSSCCC-SCCG-GGGG------------------CTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCC-CCC----CCCCCEEECCCCcCc-hhHH-Hhhc------------------ccCCCEEECCCCcCC
Confidence 45666666665432 211 246777777777776 6663 2433 344666667777777
Q ss_pred cccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815 129 GAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 129 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 204 (305)
+..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..+..+++|+.|++++|++.+...
T Consensus 68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 6667778889999999999999998888889999999999999999996666678889999999999999987654
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=8e-18 Score=129.97 Aligned_cols=128 Identities=24% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCCcEEeCCCcccC-CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchh
Q 040815 21 CSKLEFLGLGNYQIS-DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAM 99 (305)
Q Consensus 21 l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L 99 (305)
.++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ ..+++|++|++++|.+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~--~~l~~L~~L~Ls~n~i~~------------- 78 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL--PKLNKLKKLELSDNRVSG------------- 78 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC--CCCTTCCEEECCSSCCCS-------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh--hcCCCCCEEECCCCcccc-------------
Confidence 467777788877776 56677777777777777777777655 222 566677777777776663
Q ss_pred hhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccccc-CCccccCCCCCCEEeCCCCcCCcc
Q 040815 100 KIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGL-IPSSLGNLTNLESLDLSNKKFAGR 178 (305)
Q Consensus 100 ~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~ 178 (305)
.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 79 ------------------------------~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 79 ------------------------------GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp ------------------------------CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred ------------------------------hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 2333444455555555555555542 224455555666666666655544
Q ss_pred Cc---cccccCCCCCEEecc
Q 040815 179 IP---QQLVELTFLEFFNVS 195 (305)
Q Consensus 179 ~p---~~~~~l~~L~~L~l~ 195 (305)
.+ ..+..+++|++||++
T Consensus 129 ~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 129 NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTHHHHHHHHCTTCCEETTB
T ss_pred HHHHHHHHHHCCCcccccCC
Confidence 33 345556666666554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=3.3e-18 Score=134.90 Aligned_cols=130 Identities=25% Similarity=0.289 Sum_probs=97.9
Q ss_pred CEEEccCCccc-cccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFE-GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
++|+|++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.++..+ ..+++|+.|++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 102 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA--EKLPNLTHLNL 102 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH--HHCTTCCEEEC
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH--hhCCCCCEEec
Confidence 57999999998 78898899999999999999999876 778999999999999999988655444 55888999999
Q ss_pred cCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC---
Q 040815 80 SNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP--- 156 (305)
Q Consensus 80 ~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--- 156 (305)
++|.++ .+|. +..+..+++|+.|++++|.+++..+
T Consensus 103 s~N~l~-~~~~-----------------------------------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 140 (168)
T 2ell_A 103 SGNKLK-DIST-----------------------------------------LEPLKKLECLKSLDLFNCEVTNLNDYRE 140 (168)
T ss_dssp BSSSCC-SSGG-----------------------------------------GGGGSSCSCCCEEECCSSGGGTSTTHHH
T ss_pred cCCccC-cchh-----------------------------------------HHHHhcCCCCCEEEeeCCcCcchHHHHH
Confidence 888887 4331 1234455566666666666664433
Q ss_pred ccccCCCCCCEEeCCCCcCC
Q 040815 157 SSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 157 ~~~~~l~~L~~L~L~~N~l~ 176 (305)
..+..+++|++|++++|.+.
T Consensus 141 ~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 141 SVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHTTCSSCCEETTEETTSC
T ss_pred HHHHhCccCcEecCCCCChh
Confidence 25566666666666666655
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=7.5e-17 Score=128.19 Aligned_cols=133 Identities=22% Similarity=0.231 Sum_probs=76.5
Q ss_pred CcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhh
Q 040815 24 LEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVN 103 (305)
Q Consensus 24 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~ 103 (305)
.+.+++++|+++ .+|..+ .++|++|++++|.+++..+..+ ..+++|++|++++|.++ .+|...
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~-~~~~~~----------- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVF--DKLTQLTKLSLSQNQIQ-SLPDGV----------- 71 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSSCCC-CCCTTT-----------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHh--cCcccccEEECCCCcce-EeChhH-----------
Confidence 466777777775 345433 3678888888888876655544 66778888888888776 444332
Q ss_pred hccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCcccc
Q 040815 104 ARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQL 183 (305)
Q Consensus 104 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 183 (305)
+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 72 -------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 120 (177)
T 2o6r_A 72 -------------------------------FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120 (177)
T ss_dssp -------------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred -------------------------------ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence 2334445555555555554444444455555555555555553333334
Q ss_pred ccCCCCCEEeccCCcccCCCC
Q 040815 184 VELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 184 ~~l~~L~~L~l~~N~l~~~~p 204 (305)
..+++|++|++++|++++.+|
T Consensus 121 ~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 121 DRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcccCEEEecCCCeeccCc
Confidence 445555555555555554443
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=4.9e-17 Score=129.29 Aligned_cols=132 Identities=20% Similarity=0.222 Sum_probs=109.7
Q ss_pred ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
.+.+++++|++. .+|... ++.++.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---------------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 66 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---------------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEecCCCCc-cCCCCC---------------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE
Confidence 467777777777 666431 3457788888888886666678899999999999999997
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC-CCCCccCCCccCCCCCCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~ 227 (305)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.. ..+..+..+.+.+|++.|+|+
T Consensus 67 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77777899999999999999999877777899999999999999999655543 456788889999999999876
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.3e-17 Score=128.82 Aligned_cols=81 Identities=25% Similarity=0.233 Sum_probs=71.2
Q ss_pred CEEEccCCccc-cccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEc
Q 040815 1 MEAKRSHNLFE-GRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDL 79 (305)
Q Consensus 1 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L 79 (305)
++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+ ..+++|++|++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~l 95 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--EKCPNLTHLNL 95 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--HHCTTCCEEEC
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--hhCCCCCEEEC
Confidence 57999999999 78999999999999999999999876 778999999999999999988655444 56888999999
Q ss_pred cCCcCc
Q 040815 80 SNNRFS 85 (305)
Q Consensus 80 ~~n~l~ 85 (305)
++|.++
T Consensus 96 s~N~i~ 101 (149)
T 2je0_A 96 SGNKIK 101 (149)
T ss_dssp TTSCCC
T ss_pred CCCcCC
Confidence 988887
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=4e-20 Score=172.76 Aligned_cols=185 Identities=17% Similarity=0.097 Sum_probs=127.2
Q ss_pred cCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccch
Q 040815 19 INCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNA 98 (305)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~ 98 (305)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|......+. . +..+...+.+| ..+..+++
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~--------l-----l~~~~~~~~~~-~~l~~l~~ 410 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL--------L-----MRALDPLLYEK-ETLQYFST 410 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH--------H-----HHHHCTGGGHH-HHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH--------H-----HHhcccccCCH-HHHHHHHh
Confidence 34556666666666664 4566666666666666654431000000 0 00011332333 34666666
Q ss_pred hhhhh-hccc-------------cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815 99 MKIVN-ARRM-------------MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN 164 (305)
Q Consensus 99 L~~l~-l~~~-------------~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 164 (305)
|+.|+ +... ....-....|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.+++
T Consensus 411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred cccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 66665 2210 0000013468999999999995 676 999999999999999999 78999999999
Q ss_pred CCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCC-CC-CCCCCccCCCccCCCCCC
Q 040815 165 LESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPI-PQ-GKQFATFDNTSFDGNSGL 223 (305)
Q Consensus 165 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~-p~-~~~~~~l~~~~~~~n~~~ 223 (305)
|+.|+|++|.+++ +| .+..+++|+.|++++|.+++.. |. ...++.+..+++.+|+..
T Consensus 488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 9999999999996 77 8999999999999999999875 54 356777888888898753
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1.2e-17 Score=160.55 Aligned_cols=154 Identities=23% Similarity=0.198 Sum_probs=107.4
Q ss_pred EEccCCcccc---------ccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCC
Q 040815 3 AKRSHNLFEG---------RIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSK 73 (305)
Q Consensus 3 L~Ls~n~l~~---------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 73 (305)
++|+.|.|.+ ..++.+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+ ..+++
T Consensus 196 l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~ 271 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI--KNLSN 271 (727)
T ss_dssp --------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG--GGGTT
T ss_pred CccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh--hCCCC
Confidence 4555555543 45778899999999999999997 67777779999999999999998 555555 88999
Q ss_pred ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
|++|+|++|.++ .+|.. |.. +..|+.|+|++|.++ .+|..|+.+++|+.|+|++|.+++
T Consensus 272 L~~L~Ls~N~l~-~lp~~-~~~------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAE-LGS------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CCEEECTTSCCS-SCCSS-GGG------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCEEeCcCCcCC-ccChh-hcC------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 999999999999 88865 444 345777778888887 778888888999999999999888
Q ss_pred cCCccccCCCC-CCEEeCCCCcCCccCcc
Q 040815 154 LIPSSLGNLTN-LESLDLSNKKFAGRIPQ 181 (305)
Q Consensus 154 ~~p~~~~~l~~-L~~L~L~~N~l~~~~p~ 181 (305)
.+|..+..+.. +..++|++|.+++.+|.
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 87776643211 12345566666655554
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.68 E-value=1.6e-16 Score=126.28 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=47.3
Q ss_pred hccCCCCCcEEeCCCcccCCCcChhccCC-CCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChh
Q 040815 17 SLINCSKLEFLGLGNYQISDTFPSWLGTL-PKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSK 91 (305)
Q Consensus 17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~ 91 (305)
.+.++.+|+.|++++|+++. +|. +..+ ++|++|++++|.+++. ..+ ..+++|++|++++|.++ .+|+.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l--~~l~~L~~L~Ls~N~l~-~~~~~ 82 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGF--PLLRRLKTLLVNNNRIC-RIGEG 82 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCC--CCCSSCCEEECCSSCCC-EECSC
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--ccc--ccCCCCCEEECCCCccc-ccCcc
Confidence 45677888888888888874 454 4444 4888888888888765 233 66777888888887777 45543
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=1.2e-18 Score=141.35 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=124.6
Q ss_pred ccCCCCCcEEeCCCcccCCCcCh------hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChh
Q 040815 18 LINCSKLEFLGLGNYQISDTFPS------WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSK 91 (305)
Q Consensus 18 l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~ 91 (305)
+.....++.++++.+.+++..|. .+..+++|++|++++|.+++. | . +..+++|+.|++++|.++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l-~-~--~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-S--LSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC-C-C--HHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc-c-c--cccCCCCCEEECCCCCcc-cccch
Confidence 55667888888888888887776 888999999999999999874 3 3 378899999999999998 77753
Q ss_pred hhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeC
Q 040815 92 SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDL 170 (305)
Q Consensus 92 ~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L 170 (305)
+.. ++.|+.|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++
T Consensus 89 -~~~------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 89 -DAV------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp -HHH------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred -hhc------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 332 3457888899999985 55 68889999999999999985432 46889999999999
Q ss_pred CCCcCCccCccc----------cccCCCCCEEeccCCccc
Q 040815 171 SNKKFAGRIPQQ----------LVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 171 ~~N~l~~~~p~~----------~~~l~~L~~L~l~~N~l~ 200 (305)
++|.+++.+|.. +..+++|+.|| +|.++
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 999998776653 77899999987 66665
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=5.3e-16 Score=122.50 Aligned_cols=111 Identities=20% Similarity=0.246 Sum_probs=98.8
Q ss_pred CccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc
Q 040815 73 KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 73 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
..+.+++++|.++ .+|... ++.++.|++++|.+++..|..|..+++|++|+|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---------------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---------------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCCEEEeCCCCcC-ccCccC---------------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 4678999999998 788542 356889999999999888999999999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
+..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+.
T Consensus 68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred ccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 88777889999999999999999977777899999999999999999987664
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=8.3e-16 Score=134.31 Aligned_cols=197 Identities=13% Similarity=0.062 Sum_probs=143.0
Q ss_pred CEEEccCCccc--------------------cccchhccC--------CCCCcEEeCCCcccCCCcChhccCCCCCCEEE
Q 040815 1 MEAKRSHNLFE--------------------GRIPRSLIN--------CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLI 52 (305)
Q Consensus 1 ~~L~Ls~n~l~--------------------~~~~~~l~~--------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 52 (305)
++|||++|++. .....+|.+ +++|+.++|++ .++.+.+.+|.++++|+.|+
T Consensus 52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~ 130 (329)
T 3sb4_A 52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQ 130 (329)
T ss_dssp CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEE
T ss_pred eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEE
Confidence 57999999988 223346777 89999999988 77766677888899999999
Q ss_pred ccCccCCcccCCCCCCCCCCCccEEEccCCcCc---ccCChhhhhccchhh--------------------------hhh
Q 040815 53 LRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS---GNLPSKSFLCWNAMK--------------------------IVN 103 (305)
Q Consensus 53 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~---g~~p~~~~~~l~~L~--------------------------~l~ 103 (305)
+++|.+..+.+..| ..+.++..+.+..+... ..+...+|..+..|+ .+.
T Consensus 131 l~~n~i~~i~~~aF--~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~ 208 (329)
T 3sb4_A 131 IRKKTAPNLLPEAL--ADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLT 208 (329)
T ss_dssp BCCSSCCEECTTSS--CTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEE
T ss_pred cCCCCccccchhhh--cCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEE
Confidence 99998877766666 66666776666553210 022222232222222 111
Q ss_pred hccc------cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCC-EEeCCCCcCC
Q 040815 104 ARRM------MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLE-SLDLSNKKFA 176 (305)
Q Consensus 104 l~~~------~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~ 176 (305)
.... ..+...++.|+.+++++|.++...+..|.++.+|+.++|++| ++...+.+|.++.+|+ .+++.+ .++
T Consensus 209 ~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 209 IEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp EEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred EeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence 1110 011123678999999999999666778999999999999998 7767778899999999 999998 777
Q ss_pred ccCccccccCCCCCEEeccCCcccCC
Q 040815 177 GRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 177 ~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
...+.+|.++++|+.+++++|.++..
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred EEchhhhhCCccCCEEEeCCCccCcc
Confidence 66778999999999999999998843
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=3.2e-16 Score=136.98 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=134.9
Q ss_pred CCCCcEEeCCCcccC--------------------CCcChhccC--------CCCCCEEEccCccCCcccCCCCCCCCCC
Q 040815 21 CSKLEFLGLGNYQIS--------------------DTFPSWLGT--------LPKLNVLILRSNIFYGVIEEPRTGCGFS 72 (305)
Q Consensus 21 l~~L~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 72 (305)
+++|+.|||++|++. ...+.+|.+ +++|+.|+|.+ .++.+.+..| .+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF--~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF--KGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT--TTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh--hcCc
Confidence 889999999999997 222346667 89999999999 8887776666 8899
Q ss_pred CccEEEccCCcCcccCChhhhhccchhhhhhhccccc----------cCc--------------------------cccc
Q 040815 73 KLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMT----------YNK--------------------------IPDI 116 (305)
Q Consensus 73 ~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~----------~~~--------------------------~~~~ 116 (305)
+|+.+++++|.+. .+++.+|..+.++..+....... ... .+..
T Consensus 125 ~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 125 NLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred ccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 9999999999998 88888888877666555433100 000 0222
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCC-EEecc
Q 040815 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLE-FFNVS 195 (305)
Q Consensus 117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~l~ 195 (305)
+..+.+.++-...........+++|+.++|++|+++...+.+|.++.+|+++++.+| +....+.+|.++++|+ .+++.
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence 333333332111111111123789999999999999777778999999999999998 7766777899999999 99999
Q ss_pred CCcccCCCCCC--CCCCccCCCccCCCC
Q 040815 196 DNYLTGPIPQG--KQFATFDNTSFDGNS 221 (305)
Q Consensus 196 ~N~l~~~~p~~--~~~~~l~~~~~~~n~ 221 (305)
+ .++ .++.. .....+..+.+.+|.
T Consensus 283 ~-~l~-~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 283 A-SVT-AIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp T-TCC-EECTTTTTTCTTEEEEEECSSC
T ss_pred c-cce-EEchhhhhCCccCCEEEeCCCc
Confidence 8 565 33332 233445555554443
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=4.5e-16 Score=123.59 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=108.3
Q ss_pred hccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEE
Q 040815 41 WLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGI 120 (305)
Q Consensus 41 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L 120 (305)
.+..+.+|+.|++++|.++.. +... ...++|+.|++++|.++ .++ .+.. ++.|+.|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~--~~~~~L~~L~Ls~N~l~-~~~--~l~~------------------l~~L~~L 69 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLG--ATLDQFDAIDFSDNEIR-KLD--GFPL------------------LRRLKTL 69 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGG--GGTTCCSEEECCSSCCC-EEC--CCCC------------------CSSCCEE
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhh--hcCCCCCEEECCCCCCC-ccc--cccc------------------CCCCCEE
Confidence 456788999999999999865 3322 23349999999999998 442 1332 5568889
Q ss_pred EccCCccccccchhhhCCCCCCEEecCCccccccCCc--cccCCCCCCEEeCCCCcCCccCccc----cccCCCCCEEec
Q 040815 121 ILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPS--SLGNLTNLESLDLSNKKFAGRIPQQ----LVELTFLEFFNV 194 (305)
Q Consensus 121 ~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~l 194 (305)
++++|.+++..+..+..+++|+.|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|+.||+
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 99999999655566689999999999999997 5565 7889999999999999998 55664 889999999999
Q ss_pred cCCccc
Q 040815 195 SDNYLT 200 (305)
Q Consensus 195 ~~N~l~ 200 (305)
++|...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 999875
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=1.9e-15 Score=119.75 Aligned_cols=110 Identities=21% Similarity=0.282 Sum_probs=96.6
Q ss_pred ccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccc
Q 040815 74 LRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQG 153 (305)
Q Consensus 74 L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 153 (305)
-+.+++++|.+. .+|... ++.|+.|++++|.+++..|..|..+++|+.|+|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---------------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---------------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---------------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CcEEEeCCCCCC-ccCCCc---------------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 478999999997 888642 3568999999999998889999999999999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCC
Q 040815 154 LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 205 (305)
Q Consensus 154 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 205 (305)
..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++.+..+.
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 7677789999999999999999976666799999999999999999976543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=4.2e-18 Score=138.03 Aligned_cols=148 Identities=22% Similarity=0.220 Sum_probs=119.6
Q ss_pred EEEccCCccccccch------hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCcc
Q 040815 2 EAKRSHNLFEGRIPR------SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLR 75 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 75 (305)
.++++.+.++|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.. |..+ ..+++|+
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~~~L~ 96 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLD--AVADTLE 96 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-SSHH--HHHHHCS
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-cchh--hcCCcCC
Confidence 356777888887776 89999999999999999986 67 888999999999999999854 3333 5578999
Q ss_pred EEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccc-hhhhCCCCCCEEecCCcccccc
Q 040815 76 IIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIP-ASIANLKGLQVLNLQYNNLQGL 154 (305)
Q Consensus 76 ~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ 154 (305)
.|++++|.++ .+|. +.. ++.|+.|++++|.+++..+ ..+..+++|+.|++++|.+++.
T Consensus 97 ~L~L~~N~l~-~l~~--~~~------------------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 97 ELWISYNQIA-SLSG--IEK------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEEEEEECC-CHHH--HHH------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECcCCcCC-cCCc--ccc------------------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 9999999998 4552 433 3457788899999984332 4788999999999999999877
Q ss_pred CCcc----------ccCCCCCCEEeCCCCcCCc
Q 040815 155 IPSS----------LGNLTNLESLDLSNKKFAG 177 (305)
Q Consensus 155 ~p~~----------~~~l~~L~~L~L~~N~l~~ 177 (305)
+|.. +..+++|+.|| +|.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 6653 78899999998 676653
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=3.6e-15 Score=117.71 Aligned_cols=108 Identities=23% Similarity=0.244 Sum_probs=95.7
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196 (305)
Q Consensus 117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 196 (305)
.+.+++++|.++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999998 6776653 8899999999999988899999999999999999999977777789999999999999
Q ss_pred CcccCCCCC-CCCCCccCCCccCCCCCCCCCC
Q 040815 197 NYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 197 N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
|.+++..+. ...+..+..+.+.+|++.|+|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999976664 3567788899999999999985
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=9.6e-15 Score=115.68 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=94.6
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccC
Q 040815 117 LAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSD 196 (305)
Q Consensus 117 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~ 196 (305)
-+.+++++|.++ .+|..+. ++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367899999997 7787664 8999999999999988899999999999999999999976666788999999999999
Q ss_pred CcccCCCCC-CCCCCccCCCccCCCCCCCCCC
Q 040815 197 NYLTGPIPQ-GKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 197 N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
|.+++..+. ...+..+..+.+.+|++.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999966554 3567788889999999999875
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=9.1e-17 Score=151.06 Aligned_cols=132 Identities=11% Similarity=0.011 Sum_probs=71.2
Q ss_pred CCCccEEEccCCcCcccCChhhhhccchhhhhhhccc---ccc------------CcccccccEEEccCCc--cccccch
Q 040815 71 FSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRM---MTY------------NKIPDILAGIILSNNR--FVGAIPA 133 (305)
Q Consensus 71 l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~---~~~------------~~~~~~L~~L~ls~n~--l~~~~p~ 133 (305)
+++|+.|+++.|.+++..+......+++|+.|++... ..+ ...++.|+.|+++++. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 4555555555555554333332223455555555310 000 1124566666665432 4444444
Q ss_pred hhh-CCCCCCEEecCCccccc-cCCccccCCCCCCEEeCCCCcCCcc-CccccccCCCCCEEeccCCcccCC
Q 040815 134 SIA-NLKGLQVLNLQYNNLQG-LIPSSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 134 ~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
.+. .+++|+.|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 443 36677777777777664 2334446667777777777776544 333345567777777777776643
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.51 E-value=4.8e-14 Score=123.88 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=57.9
Q ss_pred EEccCC-ccccccchhhhCCCCCCEEecCC-ccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815 120 IILSNN-RFVGAIPASIANLKGLQVLNLQY-NNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197 (305)
Q Consensus 120 L~ls~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 197 (305)
++++++ .++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345555 555 3555 55555666666654 5665555555556666666666666666555555556666666666666
Q ss_pred cccCCCCCCCCCCccCCCccCCCCCCCCCC
Q 040815 198 YLTGPIPQGKQFATFDNTSFDGNSGLCGKP 227 (305)
Q Consensus 198 ~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 227 (305)
+|++..+.......+..+.+.+|++.|+|.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 665433332222224555555666665553
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.50 E-value=1.8e-15 Score=142.15 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=21.4
Q ss_pred CCCCccEEEccCCcCcccCChhhhhccchhhhhhhc
Q 040815 70 GFSKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNAR 105 (305)
Q Consensus 70 ~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~ 105 (305)
.+++|+.|++++|.+++......+..+++|+.|++.
T Consensus 291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 456777778877776543333334556666666553
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=8.8e-14 Score=122.21 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred cEEEccCC-cCcccCChhhhhccchhhhhhhccccccCcccccccEEEccC-CccccccchhhhCCCCCCEEecCCcccc
Q 040815 75 RIIDLSNN-RFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN-NRFVGAIPASIANLKGLQVLNLQYNNLQ 152 (305)
Q Consensus 75 ~~L~L~~n-~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 152 (305)
..++++++ +++ .+|. +.. +.+|+.|+|++ |.+++..+..|..+++|+.|+|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~------------------~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 69 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPG------------------AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCS------------------CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred CEEEcCCCCCCC-ccCC--CCC------------------CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence 45688887 888 7885 443 34588888996 9999888889999999999999999999
Q ss_pred ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCC
Q 040815 153 GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIP 204 (305)
Q Consensus 153 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 204 (305)
+..|..|.++++|++|+|++|+|++..+..+..++ |+.|++++|.|.+...
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 99999999999999999999999976666666665 9999999999987643
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=2.2e-15 Score=133.72 Aligned_cols=166 Identities=17% Similarity=0.121 Sum_probs=117.3
Q ss_pred CCCCcEEeCCCcccCCCcChhcc-----CCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhc
Q 040815 21 CSKLEFLGLGNYQISDTFPSWLG-----TLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLC 95 (305)
Q Consensus 21 l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~ 95 (305)
+++|+.|+|++|.++......+. ..++|++|+|++|.++......+ ...+++|+.|+|++|.++ ......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~L~~L~~L~Ls~n~l~-~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRARKLGLQLNSLG-PEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-HHHHHTEEEEECCSSCCC-HHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-HHHHHhccHhhcCCCCCC-HHHHHHHHH
Confidence 46899999999998754443333 23689999999998864322111 123568999999999887 222111211
Q ss_pred cchhhhhhhccccccCcccccccEEEccCCccccc----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCE
Q 040815 96 WNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLES 167 (305)
Q Consensus 96 l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~ 167 (305)
. + ......|+.|+|++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|++
T Consensus 149 ~--L-----------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 149 L--L-----------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp H--H-----------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred H--H-----------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence 0 0 01135699999999998743 455567889999999999998753 3456677889999
Q ss_pred EeCCCCcCCcc----CccccccCCCCCEEeccCCcccC
Q 040815 168 LDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLTG 201 (305)
Q Consensus 168 L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~~ 201 (305)
|+|++|.+++. ++..+...+.|++||+++|.++.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 99999999864 34445567899999999999873
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.45 E-value=2.7e-15 Score=133.13 Aligned_cols=185 Identities=14% Similarity=0.062 Sum_probs=124.2
Q ss_pred CEEEccCCccccccchhccC-----CCCCcEEeCCCcccCCCcChhcc-CCCCCCEEEccCccCCcccCCCCC--C-CCC
Q 040815 1 MEAKRSHNLFEGRIPRSLIN-----CSKLEFLGLGNYQISDTFPSWLG-TLPKLNVLILRSNIFYGVIEEPRT--G-CGF 71 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~--~-~~l 71 (305)
++|+|++|.++......+.. .++|++|+|++|.++......+. .+++|+.|+|++|.++......+. + ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 57999999998654444333 37999999999999754333333 467899999999998653222210 0 235
Q ss_pred CCccEEEccCCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccc----cchhhhCCCCCCEEecC
Q 040815 72 SKLRIIDLSNNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGA----IPASIANLKGLQVLNLQ 147 (305)
Q Consensus 72 ~~L~~L~L~~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls 147 (305)
+.|+.|+|++|.++ ......+.. .+. ..+.|++|+|++|.++.. ++..+...++|+.|+|+
T Consensus 155 ~~L~~L~Ls~n~l~-~~~~~~l~~--~L~------------~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 155 CQITTLRLSNNPLT-AAGVAVLME--GLA------------GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp CCCCEEECCSSCCH-HHHHHHHHH--HHH------------TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred CccceeeCCCCCCC-hHHHHHHHH--HHh------------cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 78999999999987 221111110 011 145699999999999753 35667778899999999
Q ss_pred Ccccccc----CCccccCCCCCCEEeCCCCcCCccCccccccCCC-----CCEEe--ccCCccc
Q 040815 148 YNNLQGL----IPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTF-----LEFFN--VSDNYLT 200 (305)
Q Consensus 148 ~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-----L~~L~--l~~N~l~ 200 (305)
+|.++.. +...+...++|++|||++|.|++.....+..+.. |+.+. +..|.++
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 9999853 3344556789999999999998765555544321 55555 5555443
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=2e-15 Score=141.85 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=45.1
Q ss_pred cccccEEEccCCccccccchhhhC-CCCCCEEecCCccccccCCccc-cCCCCCCEEeCCCCcCCccCcc-ccccCCCCC
Q 040815 114 PDILAGIILSNNRFVGAIPASIAN-LKGLQVLNLQYNNLQGLIPSSL-GNLTNLESLDLSNKKFAGRIPQ-QLVELTFLE 190 (305)
Q Consensus 114 ~~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~ 190 (305)
++.|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 34566666655 444443444433 5566666666666654433333 4456666666666666433322 233356666
Q ss_pred EEeccCCcc
Q 040815 191 FFNVSDNYL 199 (305)
Q Consensus 191 ~L~l~~N~l 199 (305)
+|++++|++
T Consensus 510 ~L~l~~~~~ 518 (594)
T 2p1m_B 510 SLWMSSCSV 518 (594)
T ss_dssp EEEEESSCC
T ss_pred EEeeeCCCC
Confidence 666666655
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=3e-12 Score=114.58 Aligned_cols=205 Identities=9% Similarity=0.060 Sum_probs=152.0
Q ss_pred EEEccCCccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC
Q 040815 2 EAKRSHNLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN 81 (305)
Q Consensus 2 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 81 (305)
.++|..+ ++..-..+|.++ +|+.+++.+ .+...-+.+|.++++|+.+++.+|.++.+....| . ..+|+.+.+.+
T Consensus 139 ~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF--~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 139 KVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF--V-YAGIEEVLLPV 212 (401)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT--T-TCCCSEEECCT
T ss_pred EEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE--e-ecccCEEEeCC
Confidence 4666665 665566788874 799999986 6666667789999999999999999987766666 3 58999999985
Q ss_pred CcCcccCChhhhhccchhhhhhhccccc-----cCcccccccEEEccCCccccccchhhhCCCCCCEEecCCcccc----
Q 040815 82 NRFSGNLPSKSFLCWNAMKIVNARRMMT-----YNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQ---- 152 (305)
Q Consensus 82 n~l~g~~p~~~~~~l~~L~~l~l~~~~~-----~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---- 152 (305)
+ +. .++..+|.++.+|+.+++..... .... ..|+.+.+ .+.++..-..+|.++++|+.+++.+|.+.
T Consensus 213 ~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 213 T-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp T-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred c-hh-eehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 5 77 88999999999999888765211 1112 56888888 44566456778899999999999888765
Q ss_pred -ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCCCCCC--CCCCccCCCccCCC
Q 040815 153 -GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGPIPQG--KQFATFDNTSFDGN 220 (305)
Q Consensus 153 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~--~~~~~l~~~~~~~n 220 (305)
...+.+|.++++|+.+++.+ .++......|.++++|+.+++..| ++ .++.. ... .+..+.+.+|
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCS
T ss_pred cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCC
Confidence 35567899999999999984 477566678888999999999665 44 22222 112 4555556655
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=6.7e-12 Score=112.33 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=129.3
Q ss_pred cccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCC
Q 040815 10 FEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLP 89 (305)
Q Consensus 10 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p 89 (305)
++..-..+|.++ +|+.+++..+ ++..-..+|.+ .+|+.+.+.. .++.+....| ..+++|+.+++++|.++ .++
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF--~~c~~L~~l~l~~n~l~-~I~ 196 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIF--YYCYNLKKADLSKTKIT-KLP 196 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTT--TTCTTCCEEECTTSCCS-EEC
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHh--hCcccCCeeecCCCcce-Eec
Confidence 454445677775 7999998876 65555667777 4688998886 5666655566 78889999999988888 888
Q ss_pred hhhhhccchhhhhhhccc-----cccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCC
Q 040815 90 SKSFLCWNAMKIVNARRM-----MTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTN 164 (305)
Q Consensus 90 ~~~~~~l~~L~~l~l~~~-----~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 164 (305)
..+|. ..+|+.+.+... ...+..+..|+.+++..| ++..-..+|.+ .+|+.+.+ .+.++.....+|.++++
T Consensus 197 ~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 197 ASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp TTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred hhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 88887 477777776542 122334677888888775 45344556666 78899988 45566566778888999
Q ss_pred CCEEeCCCCcCC-----ccCccccccCCCCCEEeccCCccc
Q 040815 165 LESLDLSNKKFA-----GRIPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 165 L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
|+.+++.+|.+. ...+..|..+++|+.+++.+ .++
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 999998887765 34556788888999998884 354
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=1.4e-13 Score=129.33 Aligned_cols=191 Identities=15% Similarity=0.096 Sum_probs=94.8
Q ss_pred CEEEccCCccccccchhcc-CCCCCcEEeCCCc-ccCCC-cChhccCCCCCCEEEccCccCCcccCCCC--CCCCCCCcc
Q 040815 1 MEAKRSHNLFEGRIPRSLI-NCSKLEFLGLGNY-QISDT-FPSWLGTLPKLNVLILRSNIFYGVIEEPR--TGCGFSKLR 75 (305)
Q Consensus 1 ~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~l~~L~ 75 (305)
++|+|++|.+++..+..+. .+++|++|++++| .++.. ++..+..+++|++|+|++|.+++..+..+ ....+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 3567777766665555554 5677777777766 44322 33333456777777777776554322111 113456777
Q ss_pred EEEccCCcCcccCChhhh----hccchhhhhhhcccccc------CcccccccEEEccCCc-------------------
Q 040815 76 IIDLSNNRFSGNLPSKSF----LCWNAMKIVNARRMMTY------NKIPDILAGIILSNNR------------------- 126 (305)
Q Consensus 76 ~L~L~~n~l~g~~p~~~~----~~l~~L~~l~l~~~~~~------~~~~~~L~~L~ls~n~------------------- 126 (305)
.|++++|. +.+....+ ..+++|+.|++.++... ...++.|+.|+++.+.
T Consensus 188 ~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 188 SLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp EEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred EEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence 77777765 13332222 23356666665543111 1123445555543321
Q ss_pred -------cc----cccchhhhCCCCCCEEecCCccccccCC-ccccCCCCCCEEeCCCCcCCcc-CccccccCCCCCEEe
Q 040815 127 -------FV----GAIPASIANLKGLQVLNLQYNNLQGLIP-SSLGNLTNLESLDLSNKKFAGR-IPQQLVELTFLEFFN 193 (305)
Q Consensus 127 -------l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ 193 (305)
+. +.++..+..+++|++|+|++|.+++... ..+..+++|++|++++| ++.. ++.....+++|++|+
T Consensus 266 ~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 00 1122333345566666666666543221 12345566666666655 3221 222223456666666
Q ss_pred c
Q 040815 194 V 194 (305)
Q Consensus 194 l 194 (305)
+
T Consensus 345 L 345 (594)
T 2p1m_B 345 V 345 (594)
T ss_dssp E
T ss_pred E
Confidence 6
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=1.2e-10 Score=102.57 Aligned_cols=162 Identities=15% Similarity=0.188 Sum_probs=96.0
Q ss_pred hccCCCCCcEEeCCCcccC---------CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCccc
Q 040815 17 SLINCSKLEFLGLGNYQIS---------DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGN 87 (305)
Q Consensus 17 ~l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~ 87 (305)
+...+++|+.|.+.++... +.+...+..+++|+.|+|++|.-... + .+ .+++|+.|++..+.+..
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l-~-~~---~~~~L~~L~L~~~~l~~- 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI-G-KK---PRPNLKSLEIISGGLPD- 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC-C-SC---BCTTCSEEEEECSBCCH-
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee-c-cc---cCCCCcEEEEecCCCCh-
Confidence 4556789999988765331 12344556789999999988731111 1 12 37899999998876652
Q ss_pred CChhhhhccchhhhhhhccccccCcccccccEEEccC--Cccccc-----cchhh--hCCCCCCEEecCCccccccCCcc
Q 040815 88 LPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSN--NRFVGA-----IPASI--ANLKGLQVLNLQYNNLQGLIPSS 158 (305)
Q Consensus 88 ~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~--n~l~~~-----~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~ 158 (305)
..+..+ .. ..+++|+.|+|+. |...+. +...+ ..+++|+.|+|++|.+.+..+..
T Consensus 208 ---~~l~~l---~~----------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 208 ---SVVEDI---LG----------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp ---HHHHHH---HH----------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred ---HHHHHH---HH----------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 211111 00 0144566666642 211111 11112 24678888888888776443333
Q ss_pred cc---CCCCCCEEeCCCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815 159 LG---NLTNLESLDLSNKKFAGR----IPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 159 ~~---~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 32 467888888888888764 2333455678888888888775
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.74 E-value=1e-07 Score=84.99 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=45.3
Q ss_pred hhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815 134 SIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197 (305)
Q Consensus 134 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 197 (305)
.|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 3556777888888654 55455667888889999988654 65455667888888888888765
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=6.1e-09 Score=82.89 Aligned_cols=66 Identities=21% Similarity=0.199 Sum_probs=36.0
Q ss_pred hhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeC--CCCcCCcc----CccccccCCCCCEEeccCCccc
Q 040815 135 IANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDL--SNKKFAGR----IPQQLVELTFLEFFNVSDNYLT 200 (305)
Q Consensus 135 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 200 (305)
+...+.|++|+|++|.|... +..++...++|++|+| ++|.++.. +...+...+.|++|++++|.+.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 33445566666666665532 2334455556666666 55666543 2233444566677777666653
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=4.1e-09 Score=88.43 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=62.8
Q ss_pred cCCCCCcEEeCCCcccCC--CcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCCh------
Q 040815 19 INCSKLEFLGLGNYQISD--TFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPS------ 90 (305)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~------ 90 (305)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|.|++... ...+..+ +|+.|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 568999999999999997 456777889999999999999987621 1112334 999999999999977773
Q ss_pred hhhhccchhhhhh
Q 040815 91 KSFLCWNAMKIVN 103 (305)
Q Consensus 91 ~~~~~l~~L~~l~ 103 (305)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345555555544
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=2.9e-08 Score=83.24 Aligned_cols=82 Identities=27% Similarity=0.268 Sum_probs=52.3
Q ss_pred EEccCCccccccch----hhhCCCCCCEEecCCccccc--cCCccccCCCCCCEEeCCCCcCCccCccccccCC--CCCE
Q 040815 120 IILSNNRFVGAIPA----SIANLKGLQVLNLQYNNLQG--LIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELT--FLEF 191 (305)
Q Consensus 120 L~ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~ 191 (305)
++++.|... .++. ...++++|+.|+|++|.|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence 556666432 2222 22456778888888888776 3445566777888888888877754 2233333 7778
Q ss_pred EeccCCcccCCCC
Q 040815 192 FNVSDNYLTGPIP 204 (305)
Q Consensus 192 L~l~~N~l~~~~p 204 (305)
|++++|++++.+|
T Consensus 225 L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 225 LWLDGNSLCDTFR 237 (267)
T ss_dssp EECTTSTTGGGCS
T ss_pred EEccCCcCccccC
Confidence 8888888776555
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.9e-08 Score=88.48 Aligned_cols=168 Identities=13% Similarity=0.101 Sum_probs=110.7
Q ss_pred cchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccC--CcCcccCChh
Q 040815 14 IPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSN--NRFSGNLPSK 91 (305)
Q Consensus 14 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~--n~l~g~~p~~ 91 (305)
+...+..+++|+.|+|++|.-. .++. + .+++|+.|+|..+.+.......+....+++|+.|+|+. |...+...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~-- 238 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-- 238 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC--
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh--
Confidence 5566678899999999987311 2333 3 38899999999988754321122113689999999864 22211111
Q ss_pred hhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhh---CCCCCCEEecCCcccccc----CCccccCCCC
Q 040815 92 SFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIA---NLKGLQVLNLQYNNLQGL----IPSSLGNLTN 164 (305)
Q Consensus 92 ~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~ 164 (305)
+..+. .+ .....++.|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++
T Consensus 239 -~~~l~---~~------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~ 308 (362)
T 2ra8_A 239 -MNVFR---PL------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308 (362)
T ss_dssp -GGGTG---GG------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT
T ss_pred -HHHHH---HH------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc
Confidence 11111 10 0002367899999999998755444443 578999999999999864 3334456799
Q ss_pred CCEEeCCCCcCCccCcccccc-CCCCCEEeccCCc
Q 040815 165 LESLDLSNKKFAGRIPQQLVE-LTFLEFFNVSDNY 198 (305)
Q Consensus 165 L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~l~~N~ 198 (305)
|+.|+|++|.++...-..+.. + ...++++.|.
T Consensus 309 L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 309 LKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999999999988655444543 3 4668888876
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=3.7e-09 Score=84.20 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=41.7
Q ss_pred ccccEEEccCCccccc----cchhhhCCCCCCEEec--CCcccccc----CCccccCCCCCCEEeCCCCcCC
Q 040815 115 DILAGIILSNNRFVGA----IPASIANLKGLQVLNL--QYNNLQGL----IPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 115 ~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
+.|++|+|++|.+... +...+...+.|++|+| ++|.+... +...+...++|++|+|++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4466677777776643 3455566677888888 77887743 2334555678888888888775
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.50 E-value=1.9e-06 Score=76.64 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=59.7
Q ss_pred ccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEec
Q 040815 115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNV 194 (305)
Q Consensus 115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 194 (305)
..|+.+.+..+... .-...|.++..|+.+.+. +.++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 33455555433222 334456677778888875 4455455567888888888888754 55444567888888888888
Q ss_pred cCCcccCCCCCC--CCCCccCCCccCCC
Q 040815 195 SDNYLTGPIPQG--KQFATFDNTSFDGN 220 (305)
Q Consensus 195 ~~N~l~~~~p~~--~~~~~l~~~~~~~n 220 (305)
..+ ++ .+... .....+..+.+.++
T Consensus 342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 342 PSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred Ccc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 644 43 33322 12234445555554
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.21 E-value=6.3e-06 Score=73.27 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=71.3
Q ss_pred chhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhh
Q 040815 15 PRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFL 94 (305)
Q Consensus 15 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~ 94 (305)
..+|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+++.++ ++.+....| ..+.+|+.+.+..+ +. .+...+|.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF--~~c~~L~~i~~p~~-l~-~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTF--SGCYALKSILLPLM-LK-SIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT--TTCTTCCCCCCCTT-CC-EECTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhh--cccccchhhcccCc-ee-eecceeee
Confidence 346667777777777643 54444556777777777777644 443433344 55666666655543 33 44445555
Q ss_pred ccchhhhhhhcc----ccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeC
Q 040815 95 CWNAMKIVNARR----MMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDL 170 (305)
Q Consensus 95 ~l~~L~~l~l~~----~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 170 (305)
+...+....... .......+..|+.+.+.++... .-...|.++.+|+.+++..| ++.....+|.++..|+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 443222111111 0111122344444444433211 22334444455555555443 22233334445555555444
Q ss_pred CCC
Q 040815 171 SNK 173 (305)
Q Consensus 171 ~~N 173 (305)
..+
T Consensus 216 ~~~ 218 (394)
T 4fs7_A 216 PNS 218 (394)
T ss_dssp CTT
T ss_pred CCC
Confidence 443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=9.9e-07 Score=68.90 Aligned_cols=84 Identities=11% Similarity=0.078 Sum_probs=66.6
Q ss_pred ccccEEEccCCccccccchhhhCCCCCCEEecCCcc-ccccCCccccCC----CCCCEEeCCCCc-CCccCccccccCCC
Q 040815 115 DILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNN-LQGLIPSSLGNL----TNLESLDLSNKK-FAGRIPQQLVELTF 188 (305)
Q Consensus 115 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~ 188 (305)
..|++||++++.++..--..+..+++|+.|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 358999999999886656667899999999999985 765433445554 479999999984 88655566788999
Q ss_pred CCEEeccCCc
Q 040815 189 LEFFNVSDNY 198 (305)
Q Consensus 189 L~~L~l~~N~ 198 (305)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999874
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.07 E-value=4.8e-05 Score=67.04 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=99.6
Q ss_pred hccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhcc
Q 040815 17 SLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCW 96 (305)
Q Consensus 17 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l 96 (305)
.+.....+..+.+....- ......+....+|+.+.+..+ ++.+....+ ..+..|+.+.+..+ ++ .+...+|.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f--~~~~~L~~i~lp~~-v~-~I~~~aF~~~ 262 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAF--YGMKALDEIAIPKN-VT-SIGSFLLQNC 262 (379)
T ss_dssp ECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTT--TTCSSCCEEEECTT-CC-EECTTTTTTC
T ss_pred ccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccc--cCCccceEEEcCCC-cc-EeCcccccee
Confidence 455566677766655432 234456667788888888655 333433444 67788888888765 55 6777777765
Q ss_pred chhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCC
Q 040815 97 NAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFA 176 (305)
Q Consensus 97 ~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 176 (305)
.+|+. +.+..+ +...-...|.++.+|+.+.+.++.++.....+|.++.+|+.++|..+ ++
T Consensus 263 ~~l~~------------------i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~ 322 (379)
T 4h09_A 263 TALKT------------------LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK 322 (379)
T ss_dssp TTCCE------------------EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred ehhcc------------------cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence 55443 334332 33233455777788888888877777566677888888888888654 55
Q ss_pred ccCccccccCCCCCEEeccC
Q 040815 177 GRIPQQLVELTFLEFFNVSD 196 (305)
Q Consensus 177 ~~~p~~~~~l~~L~~L~l~~ 196 (305)
..-..+|.++.+|+.+.+..
T Consensus 323 ~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 323 TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECTTTTTTCTTCCCCCCCT
T ss_pred EEHHHHhhCCCCCCEEEECC
Confidence 34455677778888777654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.07 E-value=2.4e-05 Score=69.48 Aligned_cols=150 Identities=13% Similarity=0.165 Sum_probs=92.9
Q ss_pred CCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCcccCChhhhhccchhh
Q 040815 21 CSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFSGNLPSKSFLCWNAMK 100 (305)
Q Consensus 21 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~~l~~L~ 100 (305)
...+..+.+... ++..-..+|.++.+|+.+.+..+.. .+....| ..++.|+.+.+. +.+. .++..+|.++.+|+
T Consensus 241 ~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF--~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~ 314 (394)
T 4gt6_A 241 QREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAF--MNCPALQDIEFS-SRIT-ELPESVFAGCISLK 314 (394)
T ss_dssp TCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTT--TTCTTCCEEECC-TTCC-EECTTTTTTCTTCC
T ss_pred ccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCccc--ccccccccccCC-Cccc-ccCceeecCCCCcC
Confidence 345555555433 3334456788888899888876543 2333344 778889998886 4466 78888887755544
Q ss_pred hhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCCCcCCccCc
Q 040815 101 IVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSNKKFAGRIP 180 (305)
Q Consensus 101 ~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 180 (305)
.+++..+ ++..-..+|.++.+|+.+.+..+ ++.....+|.++.+|+.+++.++....
T Consensus 315 ------------------~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--- 371 (394)
T 4gt6_A 315 ------------------SIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--- 371 (394)
T ss_dssp ------------------EEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---
T ss_pred ------------------EEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---
Confidence 4445433 44344567888889999988654 664556778899999999998875431
Q ss_pred cccccCCCCCEEeccCCcc
Q 040815 181 QQLVELTFLEFFNVSDNYL 199 (305)
Q Consensus 181 ~~~~~l~~L~~L~l~~N~l 199 (305)
..+.....|+.+.+..|.+
T Consensus 372 ~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 372 NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HTCBCCCCC----------
T ss_pred hhhhccCCCCEEEeCCCCE
Confidence 3566677888887766544
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.91 E-value=0.00016 Score=63.66 Aligned_cols=160 Identities=14% Similarity=0.084 Sum_probs=107.9
Q ss_pred ccchhccCCCCCcEEeCCCcccCC------------CcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEcc
Q 040815 13 RIPRSLINCSKLEFLGLGNYQISD------------TFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLS 80 (305)
Q Consensus 13 ~~~~~l~~l~~L~~L~L~~n~l~~------------~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~ 80 (305)
.-..+|..+.+++...+..+.... .....+.....+..+.+....- ......+ .....|+.+.+.
T Consensus 149 i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f--~~~~~l~~i~~~ 225 (379)
T 4h09_A 149 IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGF--SYGKNLKKITIT 225 (379)
T ss_dssp ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTT--TTCSSCSEEECC
T ss_pred cccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeeccc--ccccccceeeec
Confidence 345688889999998887654321 1222344455666666554322 2222233 567889998887
Q ss_pred CCcCcccCChhhhhccchhhhhhhccccccCcccccccEEEccCCccccccchhhhCCCCCCEEecCCccccccCCcccc
Q 040815 81 NNRFSGNLPSKSFLCWNAMKIVNARRMMTYNKIPDILAGIILSNNRFVGAIPASIANLKGLQVLNLQYNNLQGLIPSSLG 160 (305)
Q Consensus 81 ~n~l~g~~p~~~~~~l~~L~~l~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 160 (305)
.+ +. .+...+|.++.. |+.+.+..+ ++..-...|.++.+|+.+.+..+ ++.....+|.
T Consensus 226 ~~-~~-~i~~~~f~~~~~------------------L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 226 SG-VT-TLGDGAFYGMKA------------------LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp TT-CC-EECTTTTTTCSS------------------CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTT
T ss_pred cc-ee-EEccccccCCcc------------------ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccc
Confidence 65 44 566666665444 455555544 44344567888899999999654 5545567899
Q ss_pred CCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCC
Q 040815 161 NLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDN 197 (305)
Q Consensus 161 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 197 (305)
++.+|+.+++.++.++.....+|.++.+|+.+++..+
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 9999999999999888666778999999999999754
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=4.5e-06 Score=65.14 Aligned_cols=83 Identities=7% Similarity=-0.009 Sum_probs=43.8
Q ss_pred CCCcEEeCCCcccCCCcChhccCCCCCCEEEccCcc-CCcccCCCCCCCCC----CCccEEEccCCc-CcccCChhhhhc
Q 040815 22 SKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSNI-FYGVIEEPRTGCGF----SKLRIIDLSNNR-FSGNLPSKSFLC 95 (305)
Q Consensus 22 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l----~~L~~L~L~~n~-l~g~~p~~~~~~ 95 (305)
-.|+.||++++.|+..--..+..+++|+.|+|++|. ++...-..+ ..+ ++|+.|++++|. ++ .---..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVT-DKGIIALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCC-HHHHHHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCC-HHHHHHHhc
Confidence 356777777776665444445667777777777764 432211111 222 357777777764 44 211112345
Q ss_pred cchhhhhhhccc
Q 040815 96 WNAMKIVNARRM 107 (305)
Q Consensus 96 l~~L~~l~l~~~ 107 (305)
+++|+.|++.++
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 566666665553
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.61 E-value=0.00015 Score=53.79 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEecCCcccc-ccCCccccCCCCCCEEeCCCCcCCccCccccccCCCCCEEeccCCcccCC
Q 040815 143 VLNLQYNNLQ-GLIPSSLGNLTNLESLDLSNKKFAGRIPQQLVELTFLEFFNVSDNYLTGP 202 (305)
Q Consensus 143 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 202 (305)
.++.+++.++ ..+|..+. .+|++|+|++|+|+...+..|..+++|+.|+|++|++.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5566666654 23443322 3566677777776655555566666777777776666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=8.3e-05 Score=59.06 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=58.6
Q ss_pred ccccEEEccCCccccc----cchhhhCCCCCCEEecCCcccccc----CCccccCCCCCCEEeCCCC---cCCc----cC
Q 040815 115 DILAGIILSNNRFVGA----IPASIANLKGLQVLNLQYNNLQGL----IPSSLGNLTNLESLDLSNK---KFAG----RI 179 (305)
Q Consensus 115 ~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N---~l~~----~~ 179 (305)
..|+.|+|++|.+... +.+.+..-+.|+.|+|++|.|... +-+++..-+.|++|+|++| .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 4688888888888643 344455567899999999998753 2234555677999999865 3333 23
Q ss_pred ccccccCCCCCEEeccCCcc
Q 040815 180 PQQLVELTFLEFFNVSDNYL 199 (305)
Q Consensus 180 p~~~~~l~~L~~L~l~~N~l 199 (305)
...+..-+.|+.|+++.|..
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 44566678888999887754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.34 E-value=0.00041 Score=51.34 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=38.3
Q ss_pred EEeCCCcccC-CCcChhccCCCCCCEEEccCccCCcccCCCCCCCCCCCccEEEccCCcCc
Q 040815 26 FLGLGNYQIS-DTFPSWLGTLPKLNVLILRSNIFYGVIEEPRTGCGFSKLRIIDLSNNRFS 85 (305)
Q Consensus 26 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~ 85 (305)
.++-+++.++ ..+|..+ -++|++|+|++|.|+.+.+..+ ..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLL--DALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTG--GGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhh--hhccccCEEEecCCCee
Confidence 5677777775 2455432 2367888888888877766655 66778888888888764
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00035 Score=55.44 Aligned_cols=84 Identities=11% Similarity=0.137 Sum_probs=61.0
Q ss_pred cccccEEEccCC-ccccc----cchhhhCCCCCCEEecCCccccccCC----ccccCCCCCCEEeCCCCcCCcc----Cc
Q 040815 114 PDILAGIILSNN-RFVGA----IPASIANLKGLQVLNLQYNNLQGLIP----SSLGNLTNLESLDLSNKKFAGR----IP 180 (305)
Q Consensus 114 ~~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~----~p 180 (305)
-+.|++|+|++| .+... +.+.+..-+.|+.|+|++|.+....- ..+..-+.|++|+|++|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 356889999985 77532 34556667889999999999975432 3344568899999999999864 33
Q ss_pred cccccCCCCCEEeccCC
Q 040815 181 QQLVELTFLEFFNVSDN 197 (305)
Q Consensus 181 ~~~~~l~~L~~L~l~~N 197 (305)
+.+..-+.|++|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 34555677999999865
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=91.03 E-value=0.1 Score=30.02 Aligned_cols=11 Identities=45% Similarity=0.733 Sum_probs=4.6
Q ss_pred eeehhhhhhHH
Q 040815 265 YAGGLVAGLVL 275 (305)
Q Consensus 265 ~~~~~~~~~~~ 275 (305)
|+++++.++++
T Consensus 13 IA~gVVgGv~~ 23 (44)
T 2ks1_B 13 IATGMVGALLL 23 (44)
T ss_dssp STHHHHHHHHH
T ss_pred EEeehhHHHHH
Confidence 33444444443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.01 E-value=0.072 Score=30.60 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=4.0
Q ss_pred eehhhhhhHH
Q 040815 266 AGGLVAGLVL 275 (305)
Q Consensus 266 ~~~~~~~~~~ 275 (305)
+++++.++++
T Consensus 13 A~gVVgGv~~ 22 (44)
T 2l2t_A 13 AAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHH
T ss_pred EEeehHHHHH
Confidence 3344443433
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=79.80 E-value=1.2 Score=25.52 Aligned_cols=18 Identities=39% Similarity=0.538 Sum_probs=9.8
Q ss_pred EEEEeeeehhhhhhHHHH
Q 040815 260 IILTGYAGGLVAGLVLGF 277 (305)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~ 277 (305)
.++.++++|+++++++++
T Consensus 12 ~IA~gVVgGv~~~~ii~~ 29 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVAL 29 (44)
T ss_dssp SSTHHHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHHHH
Confidence 345566666655555443
No 168
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=76.44 E-value=1.7 Score=24.89 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=7.9
Q ss_pred EEEeeeehhhhhhHHH
Q 040815 261 ILTGYAGGLVAGLVLG 276 (305)
Q Consensus 261 ~~~~~~~~~~~~~~~~ 276 (305)
++.++++|++++++++
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 4455555555444444
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=69.22 E-value=1.7 Score=24.04 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=4.8
Q ss_pred eehhhhhhHHH
Q 040815 266 AGGLVAGLVLG 276 (305)
Q Consensus 266 ~~~~~~~~~~~ 276 (305)
+.+++++.+++
T Consensus 13 IAGiVvG~v~g 23 (38)
T 2k1k_A 13 IVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred eeeeehHHHHH
Confidence 34444444433
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.93 E-value=6.1 Score=27.04 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=33.7
Q ss_pred CccccccchhccCCCCCcEEeCCCcccCCCcChhccCCCCCCEEEccCc
Q 040815 8 NLFEGRIPRSLINCSKLEFLGLGNYQISDTFPSWLGTLPKLNVLILRSN 56 (305)
Q Consensus 8 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 56 (305)
..++..-..+|.++++|+.+.+..+ ++.+-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455455567888888888888765 44455667888888888887654
No 171
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.79 E-value=9.5 Score=22.82 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=4.8
Q ss_pred hhhHhhhhhhh
Q 040815 285 GWILEKLGTQQ 295 (305)
Q Consensus 285 ~~~~~~~~~~~ 295 (305)
-|.+..+++++
T Consensus 33 LwK~GFFkR~~ 43 (54)
T 2knc_A 33 MWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHTTTTC
T ss_pred HHHcCcccCCC
Confidence 34444444443
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.07 E-value=32 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=24.2
Q ss_pred ccchhhhCCCCCCEEecCCccccccCCccccCCCCCCEEeCCC
Q 040815 130 AIPASIANLKGLQVLNLQYNNLQGLIPSSLGNLTNLESLDLSN 172 (305)
Q Consensus 130 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 172 (305)
.-...|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445666666776666544 3334445566666666666654
No 173
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.24 E-value=14 Score=22.05 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=3.4
Q ss_pred hhhHhhhh
Q 040815 285 GWILEKLG 292 (305)
Q Consensus 285 ~~~~~~~~ 292 (305)
-|.+..++
T Consensus 30 LwK~GFFK 37 (54)
T 2l8s_A 30 LWKIGFFK 37 (54)
T ss_dssp HHHHHHTT
T ss_pred HHHcCccc
Confidence 34444443
No 174
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=37.44 E-value=17 Score=19.24 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=5.8
Q ss_pred hhhhhhHHHHHHh
Q 040815 268 GLVAGLVLGFNFS 280 (305)
Q Consensus 268 ~~~~~~~~~~~~~ 280 (305)
.+++++++++.++
T Consensus 11 t~i~gl~vif~~l 23 (40)
T 2l9u_A 11 TVIAGLVVIFMML 23 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 175
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.13 E-value=40 Score=18.92 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.4
Q ss_pred hhHhhh
Q 040815 286 WILEKL 291 (305)
Q Consensus 286 ~~~~~~ 291 (305)
|.+..+
T Consensus 32 wK~GFF 37 (42)
T 2k1a_A 32 WKVGFF 37 (42)
T ss_dssp HHTTTT
T ss_pred HHcCcc
Confidence 333344
Done!