BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040816
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 11/123 (8%)
Query: 1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTE 49
AV LESQTI HMVED C D+ +PL NV IL+ VIEY K+HVEA T++
Sbjct: 21 AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80
Query: 50 DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
DDLK WD DF K+ Q TLF+L++AANYL+IK+LLDL CQTVADMIKGK+PEEIR TF+I+
Sbjct: 81 DDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140
Query: 110 NDF 112
NDF
Sbjct: 141 NDF 143
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 5 ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVE--AKTTEDDLKNWDVDFAKL 62
+S TIK M+ED D V PL NV IL VI++ H + + DD+ WD +F K+
Sbjct: 23 QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPGGSGTDDIPVWDQEFLKV 81
Query: 63 GQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 82 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 131
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 5 ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVE--AKTTEDDLKNWDVDFAKL 62
+S TIK M+ED D V PL NV IL VI++ H + + DD+ WD +F K+
Sbjct: 23 QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPGGSGTDDIPVWDQEFLKV 81
Query: 63 GQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 82 DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 131
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Query: 5 ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQ 64
+S TIK M+ED D V PL NV IL VI++ H + DD+ WD +F K+ Q
Sbjct: 23 QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKD--DPPDDIPVWDQEFLKVDQ 79
Query: 65 DTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 80 GTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 127
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 11/118 (9%)
Query: 5 ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTEDDLKN 54
+S TIK M+ED D V PL NV IL VI++ H + DD+
Sbjct: 23 QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV 81
Query: 55 WDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 82 WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 15/123 (12%)
Query: 5 ESQTIKHMVED-----GCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTE 49
+S TIK M+ED D +PL NV IL VI++ H +
Sbjct: 22 QSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81
Query: 50 DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
DD+ WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+
Sbjct: 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 141
Query: 110 NDF 112
NDF
Sbjct: 142 NDF 144
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 108 bits (269), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 15/123 (12%)
Query: 5 ESQTIKHMVED-----GCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTE 49
+S TIK M+ED D +PL NV IL VI++ H +
Sbjct: 26 QSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 85
Query: 50 DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
DD+ WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+
Sbjct: 86 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 145
Query: 110 NDF 112
NDF
Sbjct: 146 NDF 148
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 73/113 (64%), Gaps = 11/113 (9%)
Query: 5 ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTEDDLKN 54
+S TIK M+ED D V PL NV IL VI++ H + DD+
Sbjct: 22 QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV 80
Query: 55 WDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFH 107
WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+
Sbjct: 81 WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 133
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 72/101 (71%), Gaps = 9/101 (8%)
Query: 21 VIPLLNVRGTILSMVIEYLKKHVEAKTTEDD---------LKNWDVDFAKLGQDTLFDLL 71
V+P+ NVR ++L VIE+ + H ++ ++D + +WD +F K+ Q+ L++++
Sbjct: 51 VMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEII 110
Query: 72 MAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
+AANYL+IK LLD C+ VA+MI+G+SPEEIR+TF+I NDF
Sbjct: 111 LAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 151
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 70/101 (69%), Gaps = 9/101 (8%)
Query: 21 VIPLLNVRGTILSMVIEYLKKHVEAKTTEDD---------LKNWDVDFAKLGQDTLFDLL 71
V P+ NVR ++L VIE+ + H ++ ++D + +WD +F K+ Q+ L++++
Sbjct: 51 VXPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEXLYEII 110
Query: 72 MAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
+AANYL+IK LLD C+ VA+ I+G+SPEEIR+TF+I NDF
Sbjct: 111 LAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDF 151
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 26 NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK 80
N++ L MV + + +V+ T E ++WD+D TL+ + + A+ L K
Sbjct: 697 NLKDQALDMVRDVITAYVDGATGEGYAEDWDLDALWTALKTLYPVGITADSLTRK 751
>pdb|3DVU|A Chain A, Crystal Structure Of The Complex Of Murine Gamma-
Herpesvirus 68 Bcl-2 Homolog M11 And The Beclin 1 Bh3
Domain
pdb|3DVU|B Chain B, Crystal Structure Of The Complex Of Murine Gamma-
Herpesvirus 68 Bcl-2 Homolog M11 And The Beclin 1 Bh3
Domain
Length = 143
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 7 QTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTED---DLKNWDVDFAKLG 63
+T+ + E C DS + L++V I+++ E+ ++H ++ D LKNW D +KL
Sbjct: 20 KTVSKVEELDCVDSAV-LVDV-SKIITLTQEF-RRHYDSVYRADYGPALKNWKRDLSKLF 76
Query: 64 QDTLFDLLMAANYLDIKSLLDLLCQTV 90
D++ + + + +C+ V
Sbjct: 77 TSLFVDVINSGRIVGFFDVGRYVCEEV 103
>pdb|3BL2|A Chain A, Crystal Structure Of M11, The Bcl-2 Homolog Of Murine
Gamma- Herpesvirus 68, Complexed With Mouse Beclin1
(Residues 106- 124)
pdb|3BL2|B Chain B, Crystal Structure Of M11, The Bcl-2 Homolog Of Murine
Gamma- Herpesvirus 68, Complexed With Mouse Beclin1
(Residues 106- 124)
Length = 131
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 7 QTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTED---DLKNWDVDFAKLG 63
+T+ + E C DS + L++V I+++ E+ ++H ++ D LKNW D +KL
Sbjct: 15 KTVSKVEELDCVDSAV-LVDV-SKIITLTQEF-RRHYDSVYRADYGPALKNWKRDLSKLF 71
Query: 64 QDTLFDLLMAANYLDIKSLLDLLCQTV 90
D++ + + + +C+ V
Sbjct: 72 TSLFVDVINSGRIVGFFDVGRYVCEEV 98
>pdb|2ABO|A Chain A, Nmr Structure Of Gamma Herpesvirus 68 A Viral Bcl-2
Homolog
Length = 136
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 7 QTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTED---DLKNWDVDFAKLG 63
+T+ + E C DS + L++V I+++ E+ ++H ++ D LKNW D +KL
Sbjct: 19 KTVSKVEELDCVDSAV-LVDV-SKIITLTQEF-RRHYDSVYRADYGPALKNWKRDLSKLF 75
Query: 64 QDTLFDLLMAANYLDIKSLLDLLCQTV 90
D++ + + + +C+ V
Sbjct: 76 TSLFVDVINSGRIVGFFDVGRYVCEEV 102
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 43 VEAKTTEDDLKNWDVDF-AKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPE 100
V ++ T +L W +F A +G + +++ AN +DIK+ + + V +++KGK+ E
Sbjct: 94 VTSRITCQNLARWVKEFQAVVGNEA--PIVVCANKIDIKNRQKISKKLVMEVLKGKNYE 150
>pdb|3DZE|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Cadmium
pdb|3E3Z|A Chain A, Crystal Structure Of Bovine Coupling Factor B Bound With
Phenylarsine Oxide
pdb|3E4G|A Chain A, Crystal Structure Of Bovine Coupling Factor B, G28e Mutant
Length = 176
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 11 HMVEDGCADSVIPLLNVRGTILSMVI 36
H +EDGC + + L N++ ++L M I
Sbjct: 96 HYIEDGCLERLSQLENLQKSMLEMEI 121
>pdb|3E2J|A Chain A, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|B Chain B, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|C Chain C, Crystal Structure Of Bovine Coupling Factor B
pdb|3E2J|D Chain D, Crystal Structure Of Bovine Coupling Factor B
Length = 176
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 11 HMVEDGCADSVIPLLNVRGTILSMVI 36
H +EDGC + + L N++ ++L M I
Sbjct: 96 HYIEDGCLERLSQLENLQKSMLEMEI 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,051,830
Number of Sequences: 62578
Number of extensions: 104295
Number of successful extensions: 285
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 24
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)