Query 040816
Match_columns 128
No_of_seqs 110 out of 738
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 2.1E-51 7.2E-56 297.1 13.1 128 1-128 24-167 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 4.1E-50 1.4E-54 287.9 2.8 128 1-128 21-159 (160)
3 2ast_A S-phase kinase-associat 100.0 2.7E-46 9.1E-51 267.5 13.8 126 2-127 19-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 1.9E-43 6.6E-48 248.5 11.2 113 1-114 19-141 (141)
5 2fnj_C Transcription elongatio 99.9 1.2E-23 4.2E-28 138.8 4.4 74 1-79 18-96 (96)
6 1vcb_B Protein (elongin C); tu 99.9 3.1E-23 1.1E-27 140.5 6.2 74 1-79 34-112 (112)
7 1hv2_A Elongin C, ELC1; protei 99.9 1.8E-23 6E-28 138.8 4.2 74 1-79 21-99 (99)
8 4ajy_C Transcription elongatio 99.8 5.8E-21 2E-25 125.9 5.4 73 2-79 20-97 (97)
9 2yy9_A Zinc finger and BTB dom 98.6 1.6E-08 5.6E-13 69.1 3.6 81 3-100 45-125 (135)
10 1buo_A POZ domain, protein (pr 98.5 8.5E-07 2.9E-11 59.2 8.1 74 3-94 48-121 (121)
11 2vkp_A BTB/POZ domain-containi 98.4 1.3E-06 4.5E-11 56.8 7.7 75 3-93 32-108 (109)
12 3htm_A Speckle-type POZ protei 98.4 3.3E-06 1.1E-10 58.9 9.3 84 3-102 54-140 (172)
13 2vpk_A Myoneurin; transcriptio 98.3 2.6E-06 8.9E-11 56.2 8.3 72 3-91 42-115 (116)
14 2if5_A Zinc finger and BTB dom 98.3 3.3E-06 1.1E-10 55.9 8.3 72 3-90 45-119 (120)
15 3b84_A Zinc finger and BTB dom 98.3 9.2E-07 3.2E-11 58.9 5.5 73 3-92 44-116 (119)
16 2q81_A MIZ-1 protein; BTB/POZ 98.3 2.1E-06 7.3E-11 57.1 6.5 71 3-91 47-117 (119)
17 1r29_A B-cell lymphoma 6 prote 98.3 4E-06 1.4E-10 56.1 7.9 74 3-92 49-125 (127)
18 4eoz_A Speckle-type POZ protei 98.2 1.8E-06 6.2E-11 58.6 4.8 91 3-112 45-138 (145)
19 3ga1_A Nucleus accumbens-assoc 98.2 1E-06 3.5E-11 59.4 3.3 73 3-92 53-126 (129)
20 2ppi_A Gigaxonin; BTB domain, 98.1 3.9E-06 1.3E-10 57.8 5.7 72 3-90 67-143 (144)
21 2z8h_A Transcription regulator 98.1 3.8E-06 1.3E-10 57.2 5.3 78 3-96 56-135 (138)
22 3hve_A Gigaxonin; ubiquitin, c 98.1 6.6E-06 2.3E-10 61.2 6.6 83 3-101 51-138 (256)
23 3hqi_A Speckle-type POZ protei 97.9 4.5E-05 1.5E-09 58.1 8.6 84 3-102 194-280 (312)
24 3i3n_A Kelch-like protein 11; 97.9 1.5E-05 5.1E-10 60.0 5.1 84 3-102 55-147 (279)
25 3ohu_A Transcription regulator 97.8 2.2E-06 7.6E-11 57.3 0.0 71 3-89 52-124 (125)
26 3m5b_A Zinc finger and BTB dom 97.7 3.8E-05 1.3E-09 51.3 4.8 58 19-92 60-117 (119)
27 3fkc_A Transcriptional regulat 97.7 7.8E-05 2.7E-09 49.3 5.9 65 3-84 51-115 (116)
28 2ihc_A Transcription regulator 97.6 1E-05 3.4E-10 54.1 0.8 72 3-90 49-122 (124)
29 3drz_A BTB/POZ domain-containi 76.7 11 0.00037 23.9 6.5 57 20-92 50-106 (107)
30 2k9n_A MYB24; R2R3 domain, DNA 71.1 5.4 0.00018 25.3 3.9 35 88-122 25-66 (107)
31 2xf7_A GP23.1; viral protein; 67.0 3.6 0.00012 22.7 2.0 35 91-127 12-47 (51)
32 1gv2_A C-MYB, MYB proto-oncoge 66.8 4.6 0.00016 25.4 2.9 35 88-122 28-69 (105)
33 1wgx_A KIAA1903 protein; MYB D 65.8 4 0.00014 24.8 2.3 20 88-107 35-54 (73)
34 1h8a_C AMV V-MYB, MYB transfor 65.1 10 0.00035 24.7 4.4 36 87-122 50-92 (128)
35 1pd7_B MAD1; PAH2, SIN3, eukar 64.4 2.1 7.3E-05 20.7 0.7 12 67-78 5-16 (26)
36 4eef_G F-HB80.4, designed hema 61.7 2.1 7E-05 26.2 0.4 45 62-110 25-69 (74)
37 2cqq_A RSGI RUH-037, DNAJ homo 60.9 5.8 0.0002 23.8 2.4 19 88-107 35-53 (72)
38 1ug2_A 2610100B20RIK gene prod 59.8 6.2 0.00021 25.1 2.4 20 88-107 59-78 (95)
39 3g5o_A Uncharacterized protein 59.7 18 0.00063 23.0 4.8 49 62-110 47-97 (108)
40 3osg_A MYB21; transcription-DN 56.4 14 0.00049 24.0 4.0 36 87-122 33-75 (126)
41 3zqc_A MYB3; transcription-DNA 54.5 6.5 0.00022 25.9 2.0 35 88-122 26-67 (131)
42 2cjj_A Radialis; plant develop 53.0 8.3 0.00028 24.3 2.2 20 88-107 35-54 (93)
43 1x41_A Transcriptional adaptor 52.7 10 0.00034 21.5 2.4 20 88-107 32-51 (60)
44 3tnt_A SARS coronavirus main p 52.6 14 0.00048 28.2 3.7 96 20-118 189-297 (306)
45 2jsp_A Transcriptional regulat 51.0 6.8 0.00023 24.6 1.5 18 96-113 43-60 (87)
46 3hm5_A DNA methyltransferase 1 48.3 21 0.00072 22.5 3.5 18 89-106 54-76 (93)
47 2eqr_A N-COR1, N-COR, nuclear 48.1 11 0.00039 21.4 2.1 19 88-106 35-53 (61)
48 1h89_C C-MYB, MYB proto-oncoge 47.3 18 0.0006 24.4 3.4 36 87-122 81-123 (159)
49 2yus_A SWI/SNF-related matrix- 47.1 13 0.00045 22.5 2.4 39 63-107 22-60 (79)
50 2cqr_A RSGI RUH-043, DNAJ homo 46.9 6.1 0.00021 23.8 0.8 21 87-107 44-64 (73)
51 3lvl_A NIFU-like protein; prot 45.7 20 0.0007 23.6 3.4 38 70-107 53-91 (129)
52 3mkl_A HTH-type transcriptiona 45.6 53 0.0018 20.5 7.8 44 26-73 3-46 (120)
53 2lr8_A CAsp8-associated protei 51.4 4.4 0.00015 24.4 0.0 21 86-107 38-58 (70)
54 2qq4_A Iron-sulfur cluster bio 45.3 22 0.00074 23.7 3.5 21 86-106 70-90 (138)
55 3few_X Colicin S4; cell lysis, 45.3 21 0.00072 28.7 3.8 29 86-114 164-192 (505)
56 3htm_A Speckle-type POZ protei 45.1 16 0.00056 24.2 2.9 63 28-95 101-165 (172)
57 2elk_A SPCC24B10.08C protein; 44.2 17 0.00057 20.4 2.4 20 87-106 32-52 (58)
58 2yum_A ZZZ3 protein, zinc fing 43.6 16 0.00054 21.5 2.3 20 87-106 36-55 (75)
59 1xjs_A NIFU-like protein; SR17 43.3 24 0.00082 23.8 3.5 38 70-107 55-93 (147)
60 3d55_A Antitoxin, uncharacteri 42.7 16 0.00055 22.4 2.3 48 62-109 38-90 (91)
61 3d23_B 3C-like proteinase; mai 41.3 18 0.00063 27.4 2.8 95 20-118 191-296 (302)
62 2ftc_M Mitochondrial ribosomal 41.0 18 0.00061 23.3 2.4 22 87-108 13-34 (110)
63 3kf9_B MLCK2, myosin light cha 40.4 13 0.00044 17.2 1.2 13 66-78 6-18 (22)
64 1su0_B NIFU like protein ISCU; 40.2 32 0.0011 23.5 3.8 38 70-107 54-92 (159)
65 3tlo_A 3CL-Pro, 3CLP, 3C-like 39.2 11 0.00038 28.7 1.3 94 21-118 190-294 (303)
66 1i4j_A 50S ribosomal protein L 38.0 20 0.0007 23.0 2.4 22 87-108 17-38 (110)
67 2kw0_A CCMH protein; oxidoredu 37.5 22 0.00075 22.3 2.3 18 89-106 48-66 (90)
68 4e2i_2 DNA polymerase alpha su 37.2 33 0.0011 21.0 3.0 35 27-61 19-71 (78)
69 2hl7_A Cytochrome C-type bioge 36.8 23 0.00079 21.9 2.3 18 89-106 51-69 (84)
70 1guu_A C-MYB, MYB proto-oncoge 35.4 19 0.00067 19.4 1.7 19 88-106 27-45 (52)
71 3r8s_S 50S ribosomal protein L 35.1 24 0.00083 22.7 2.4 21 87-107 17-37 (110)
72 3hr0_A COG4; conserved oligome 35.0 20 0.00068 26.7 2.2 23 98-120 239-261 (263)
73 4eo3_A Bacterioferritin comigr 34.8 8.8 0.0003 29.1 0.2 35 68-112 246-280 (322)
74 2guz_B Mitochondrial import in 34.6 33 0.0011 19.9 2.7 22 97-118 1-25 (65)
75 2cu7_A KIAA1915 protein; nucle 34.3 27 0.00093 20.3 2.3 20 87-106 31-50 (72)
76 2z7e_A ISCU protein, NIFU-like 34.1 26 0.00089 24.0 2.5 23 85-107 68-90 (157)
77 1x3u_A Transcriptional regulat 33.0 57 0.0019 18.4 3.7 22 88-109 23-44 (79)
78 1tc3_C Protein (TC3 transposas 33.0 43 0.0015 16.5 2.9 17 93-109 18-34 (51)
79 4eb5_C NIFU protein (NIFU-1); 32.9 32 0.0011 23.5 2.8 23 84-106 62-84 (153)
80 1xb4_A VPS25, hypothetical 23. 32.2 19 0.00065 25.9 1.6 13 34-46 33-45 (202)
81 1jw2_A Hemolysin expression mo 31.8 85 0.0029 18.8 4.4 15 62-76 35-49 (72)
82 2d9a_A B-MYB, MYB-related prot 31.7 29 0.00098 19.3 2.1 21 87-107 31-51 (60)
83 2llk_A Cyclin-D-binding MYB-li 30.9 34 0.0012 20.4 2.4 20 87-107 45-64 (73)
84 1ni7_A ER75, hypothetical prot 30.6 48 0.0016 22.7 3.4 34 82-115 87-128 (155)
85 4dyq_A Gene 1 protein; GP1, oc 30.0 47 0.0016 21.8 3.2 27 82-111 17-43 (140)
86 1gvd_A MYB proto-oncogene prot 29.6 21 0.00072 19.3 1.2 20 88-107 27-46 (52)
87 1ofc_X ISWI protein; nuclear p 29.5 28 0.00096 26.6 2.2 42 61-107 112-153 (304)
88 1jr5_A 10 kDa anti-sigma facto 29.5 76 0.0026 19.8 3.8 61 65-128 6-77 (90)
89 2f2c_A Cyclin homolog, V-cycli 29.2 61 0.0021 23.3 4.0 41 80-120 94-135 (254)
90 4iej_A DNA methyltransferase 1 28.8 64 0.0022 20.3 3.5 19 88-106 53-76 (93)
91 2zjr_P 50S ribosomal protein L 28.7 31 0.001 23.1 2.1 22 87-108 38-59 (134)
92 1j2j_B ADP-ribosylation factor 28.7 76 0.0026 17.2 3.3 19 86-104 9-27 (45)
93 2guz_A Mitochondrial import in 28.6 70 0.0024 18.4 3.5 23 96-118 10-33 (71)
94 2xuv_A HDEB, 10K-L protein; un 28.2 22 0.00075 21.7 1.2 27 19-45 38-64 (79)
95 3g0m_A Cysteine desulfuration 28.1 53 0.0018 22.0 3.2 33 82-114 80-120 (141)
96 2dim_A Cell division cycle 5-l 28.0 38 0.0013 19.5 2.2 20 88-107 33-52 (70)
97 2q6f_A Fragment, infectious br 27.8 56 0.0019 24.9 3.5 95 20-118 189-300 (309)
98 3cuq_C Vacuolar protein-sortin 26.8 23 0.0008 24.9 1.3 12 34-45 36-47 (176)
99 1xrx_A SEQA protein; protein f 26.5 44 0.0015 18.5 2.1 26 87-112 11-39 (50)
100 1s1g_A Potassium voltage-gated 26.4 44 0.0015 21.8 2.5 54 20-89 53-107 (124)
101 3few_X Colicin S4; cell lysis, 26.4 38 0.0013 27.2 2.5 38 86-123 251-289 (505)
102 3aaf_A Werner syndrome ATP-dep 26.1 37 0.0013 22.4 2.1 54 65-122 16-75 (134)
103 1b0n_B Protein (SINI protein); 26.0 28 0.00095 19.9 1.3 18 94-111 24-41 (57)
104 2iw5_B Protein corest, REST co 25.6 41 0.0014 24.8 2.4 21 87-107 155-175 (235)
105 1d8j_A General transcription f 25.5 52 0.0018 20.2 2.5 20 26-45 7-27 (81)
106 3drx_A BTB/POZ domain-containi 25.5 62 0.0021 23.2 3.3 53 26-93 61-113 (202)
107 1zx4_A P1 PARB, plasmid partit 25.3 72 0.0025 22.5 3.6 15 94-108 22-36 (192)
108 1vq8_R 50S ribosomal protein L 25.1 42 0.0014 23.0 2.3 21 87-107 29-49 (155)
109 2jpc_A SSRB; DNA binding prote 25.1 52 0.0018 17.6 2.4 17 93-109 10-26 (61)
110 2b67_A COG0778: nitroreductase 25.0 19 0.00067 24.5 0.6 18 95-112 157-174 (204)
111 3d53_A Inorganic pyrophosphata 24.4 1.2E+02 0.004 21.1 4.6 45 25-75 125-170 (173)
112 2din_A Cell division cycle 5-l 24.2 47 0.0016 18.8 2.1 19 88-107 32-50 (66)
113 1qez_A Ppase, S-ppase, protein 23.8 1.2E+02 0.004 21.1 4.4 45 25-75 121-166 (173)
114 1vfr_A NAD(P)H\:FMN oxidoreduc 23.8 15 0.00052 25.3 -0.2 18 95-112 165-183 (218)
115 2yh9_A Small protein A, BAME p 23.5 35 0.0012 20.7 1.5 20 91-110 11-30 (88)
116 2fre_A NAD(P)H-flavin oxidored 23.4 24 0.00084 24.2 0.8 36 67-112 118-153 (200)
117 2jqt_A H-NS/STPA-binding prote 23.3 97 0.0033 18.5 3.3 11 66-76 35-45 (71)
118 2w9y_A CE-FAR-7, fatty acid/re 23.3 70 0.0024 21.6 3.1 47 79-125 88-136 (140)
119 2prd_A Pyrophosphate phosphohy 23.2 1.1E+02 0.0037 21.3 4.2 46 24-75 121-169 (174)
120 3j21_S 50S ribosomal protein L 23.1 50 0.0017 22.6 2.4 21 87-107 32-52 (155)
121 1uqv_A STE50 protein; SAM, ste 23.1 41 0.0014 20.9 1.7 42 25-70 7-50 (85)
122 3bem_A Putative NAD(P)H nitror 22.1 17 0.00057 25.3 -0.3 18 95-112 169-186 (218)
123 1d5y_A ROB transcription facto 21.9 2.2E+02 0.0074 20.1 9.5 17 30-46 3-19 (292)
124 4a17_Q RPL17, 60S ribosomal pr 21.6 53 0.0018 23.2 2.3 21 87-107 31-51 (183)
125 3h4o_A Nitroreductase family p 21.6 31 0.001 23.8 1.0 35 68-112 120-154 (191)
126 1ywq_A Nitroreductase family p 21.6 23 0.00078 23.9 0.4 15 98-112 156-170 (200)
127 2eqx_A Kelch repeat and BTB do 21.6 87 0.003 19.2 3.2 46 62-107 8-62 (105)
128 1sxv_A Inorganic pyrophosphata 21.6 1.4E+02 0.0047 20.8 4.4 45 25-75 119-164 (172)
129 3myf_A Sensor protein; HPT, hi 20.9 1.4E+02 0.0048 18.9 4.1 38 67-104 56-93 (119)
130 1je8_A Nitrate/nitrite respons 20.9 68 0.0023 18.7 2.4 16 94-109 34-49 (82)
131 1m93_A Serine proteinase inhib 20.8 33 0.0011 19.0 0.9 21 91-111 31-51 (55)
132 1f5q_B Gamma herpesvirus cycli 20.5 46 0.0016 24.3 1.8 41 80-120 91-132 (252)
133 1fse_A GERE; helix-turn-helix 20.1 86 0.0029 17.3 2.7 17 93-109 23-39 (74)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=2.1e-51 Score=297.05 Aligned_cols=128 Identities=45% Similarity=0.750 Sum_probs=113.9
Q ss_pred ChhhhhHHHHHHHhcCCC-----C--CceecCCCCHHHHHHHHHHHHhcccCCC---------CcccccchhhhhhccCh
Q 040816 1 AVMLESQTIKHMVEDGCA-----D--SVIPLLNVRGTILSMVIEYLKKHVEAKT---------TEDDLKNWDVDFAKLGQ 64 (128)
Q Consensus 1 ~aa~~S~~i~~~l~~~~~-----~--~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---------~~~~~~~wd~~Fl~~~~ 64 (128)
++|++|+||++||++.+. . .+||||+|+|.+|++|++||+||+.+++ ....+++||++|+++++
T Consensus 24 ~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~ 103 (169)
T 3v7d_A 24 KIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQ 103 (169)
T ss_dssp HHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCH
T ss_pred HHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCH
Confidence 379999999999998653 3 7899999999999999999999998752 24568999999999999
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816 65 DTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF 128 (128)
Q Consensus 65 ~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~f 128 (128)
+.||+|+.|||||+|++|+++||++||++|+||||||||++|||++|||||||+++|+||+|+|
T Consensus 104 ~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~W~~ 167 (169)
T 3v7d_A 104 EMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAE 167 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=4.1e-50 Score=287.85 Aligned_cols=128 Identities=70% Similarity=1.071 Sum_probs=83.3
Q ss_pred ChhhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCC-----------CCcccccchhhhhhccChHHHHH
Q 040816 1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTEDDLKNWDVDFAKLGQDTLFD 69 (128)
Q Consensus 1 ~aa~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~-----------~~~~~~~~wd~~Fl~~~~~~l~~ 69 (128)
++|++|++|++|+++.+...+||||+|+|.+|++|++||+||+.++ .....+++||++|++++.+.||+
T Consensus 21 ~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~e 100 (160)
T 2p1m_A 21 AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFE 100 (160)
T ss_dssp HHHHTCTTTC------------CCTTSCHHHHHHHHHC------------------------------------------
T ss_pred HHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHH
Confidence 3789999999999987777899999999999999999999999764 13456899999999999999999
Q ss_pred HHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816 70 LLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF 128 (128)
Q Consensus 70 li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~f 128 (128)
|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||++++|+||+|+|
T Consensus 101 Li~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~ 159 (160)
T 2p1m_A 101 LILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF 159 (160)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999986
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=2.7e-46 Score=267.54 Aligned_cols=126 Identities=52% Similarity=0.826 Sum_probs=116.4
Q ss_pred hhhhhHHHHHHHhcCC-C----CCceecCCCCHHHHHHHHHHHHhcccCCC----------CcccccchhhhhhccChHH
Q 040816 2 VMLESQTIKHMVEDGC-A----DSVIPLLNVRGTILSMVIEYLKKHVEAKT----------TEDDLKNWDVDFAKLGQDT 66 (128)
Q Consensus 2 aa~~S~~i~~~l~~~~-~----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~----------~~~~~~~wd~~Fl~~~~~~ 66 (128)
+|++|++|++|+++.+ . ..+||||+|+|.+|++|++||+||+.+++ ....+++||++|++++.+.
T Consensus 19 vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~ 98 (159)
T 2ast_A 19 IAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGT 98 (159)
T ss_dssp HHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHH
T ss_pred HHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHH
Confidence 6899999999999843 2 37899999999999999999999997652 2467899999999999999
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCC
Q 040816 67 LFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRA 127 (128)
Q Consensus 67 l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~ 127 (128)
|++|+.||+||+|++|+++||++||++|+||||+|||++|||++||||||+++||+||+|+
T Consensus 99 l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 99 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=1.9e-43 Score=248.53 Aligned_cols=113 Identities=52% Similarity=0.831 Sum_probs=95.3
Q ss_pred ChhhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCC----------CcccccchhhhhhccChHHHHHH
Q 040816 1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKT----------TEDDLKNWDVDFAKLGQDTLFDL 70 (128)
Q Consensus 1 ~aa~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~----------~~~~~~~wd~~Fl~~~~~~l~~l 70 (128)
++|++|++|++|+++.+ ..+||||+|+|.+|++|++||+||+.+++ ....+++||++|++++.+.||+|
T Consensus 19 ~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eL 97 (141)
T 1fs1_B 19 EIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFEL 97 (141)
T ss_dssp GGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHH
T ss_pred HHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHH
Confidence 47899999999999876 77999999999999999999999997752 24568999999999999999999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 040816 71 LMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114 (128)
Q Consensus 71 i~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~ 114 (128)
+.|||||+|++|+++||++||++|+||||||||++|||++||||
T Consensus 98 i~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 98 ILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999999999999999999999997
No 5
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.88 E-value=1.2e-23 Score=138.82 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=64.3
Q ss_pred ChhhhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhh
Q 040816 1 AVMLESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 1 ~aa~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
++|++|+||++|+++.+. ..+||||+|+|.+|+||++||+||+.++.....+++| +++++.||+|+.|||
T Consensus 18 ~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w-----~vd~~~l~eLi~AAn 92 (96)
T 2fnj_C 18 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-----PIAPEIALELLMAAN 92 (96)
T ss_dssp HHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCC-----CCCTTTHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCc-----ccCHHHHHHHHHHHH
Confidence 379999999999998543 3589999999999999999999999875456678888 699999999999999
Q ss_pred hccH
Q 040816 76 YLDI 79 (128)
Q Consensus 76 ~L~i 79 (128)
||+|
T Consensus 93 yLdI 96 (96)
T 2fnj_C 93 FLDC 96 (96)
T ss_dssp HHTC
T ss_pred HhCc
Confidence 9996
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.88 E-value=3.1e-23 Score=140.50 Aligned_cols=74 Identities=26% Similarity=0.405 Sum_probs=64.7
Q ss_pred ChhhhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhh
Q 040816 1 AVMLESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 1 ~aa~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
++|++|+||++||++.+. ..+||||+|+|.+|+||++||+||+.++.....+++| +++++.||+|+.|||
T Consensus 34 ~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w-----~vd~~~lfeLi~AAn 108 (112)
T 1vcb_B 34 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-----PIAPEIALELLMAAN 108 (112)
T ss_dssp HHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCC-----CCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCc-----ccCHHHHHHHHHHHH
Confidence 379999999999998643 2589999999999999999999999876556678888 699999999999999
Q ss_pred hccH
Q 040816 76 YLDI 79 (128)
Q Consensus 76 ~L~i 79 (128)
||+|
T Consensus 109 yLdI 112 (112)
T 1vcb_B 109 FLDC 112 (112)
T ss_dssp HHTC
T ss_pred HhCc
Confidence 9997
No 7
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.88 E-value=1.8e-23 Score=138.81 Aligned_cols=74 Identities=27% Similarity=0.488 Sum_probs=63.9
Q ss_pred ChhhhhHHHHHHHhcCC--CCCceecCCCCHHHHHHHHHHHHhcccCCC---CcccccchhhhhhccChHHHHHHHHHhh
Q 040816 1 AVMLESQTIKHMVEDGC--ADSVIPLLNVRGTILSMVIEYLKKHVEAKT---TEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 1 ~aa~~S~~i~~~l~~~~--~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
++|++|+||++|+++.. ...+||||+|+|.+|+||++||+||+++++ ....+++| +++++.||+|+.|||
T Consensus 21 ~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-----~vd~~~lfeLi~AAn 95 (99)
T 1hv2_A 21 SAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-----EIPTEMSLELLLAAD 95 (99)
T ss_dssp HHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-----CCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-----cCCHHHHHHHHHHHH
Confidence 37999999999999843 237899999999999999999999997642 34567888 699999999999999
Q ss_pred hccH
Q 040816 76 YLDI 79 (128)
Q Consensus 76 ~L~i 79 (128)
||+|
T Consensus 96 yLdI 99 (99)
T 1hv2_A 96 YLSI 99 (99)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 9997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.82 E-value=5.8e-21 Score=125.90 Aligned_cols=73 Identities=26% Similarity=0.411 Sum_probs=63.7
Q ss_pred hhhhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhh
Q 040816 2 VMLESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANY 76 (128)
Q Consensus 2 aa~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~ 76 (128)
||++|++|++|+++.+. ..+||||+|++.+|++|++||+||+.+++....+++| +++++.+++|+.||||
T Consensus 20 vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~-----~i~~~~l~eLl~AAny 94 (97)
T 4ajy_C 20 HALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-----PIAPEIALELLMAANF 94 (97)
T ss_dssp HHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCC-----CCCGGGHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcC-----cCCHHHHHHHHHHHhh
Confidence 68999999999998542 6789999999999999999999999886555678999 4899999999999999
Q ss_pred ccH
Q 040816 77 LDI 79 (128)
Q Consensus 77 L~i 79 (128)
|+.
T Consensus 95 L~~ 97 (97)
T 4ajy_C 95 LDC 97 (97)
T ss_dssp HTC
T ss_pred hCC
Confidence 983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=98.64 E-value=1.6e-08 Score=69.11 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL 82 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L 82 (128)
|..|..++.|+.... ...|.|++++..+++.+++|+....- .++.+.+.+|+.||++|+|+.|
T Consensus 45 aa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~~----------------~i~~~~v~~ll~~A~~l~i~~L 107 (135)
T 2yy9_A 45 ACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGHL----------------ALTSGNRDQVLLAAKELRVPEA 107 (135)
T ss_dssp HHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTCHHH
T ss_pred HHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCCC----------------CCCHHHHHHHHHHHHHhCcHHH
Confidence 456899999998654 56799999999999999999987332 1344668999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHH
Q 040816 83 LDLLCQTVADMIKGKSPE 100 (128)
Q Consensus 83 ~~l~~~~ia~~i~gkt~e 100 (128)
.+.|++++...+.|+++.
T Consensus 108 ~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 108 VELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp HHHHHHCCC---------
T ss_pred HHHHHHHHHHhccCCCCC
Confidence 999999999998888764
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.46 E-value=8.5e-07 Score=59.15 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=61.8
Q ss_pred hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL 82 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L 82 (128)
|..|...+.|+... ...|.+++++..+++.+++|+..-.-. ++.+.+.+|+.||++|+++.|
T Consensus 48 aa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~~----------------~~~~~~~~ll~~A~~~~i~~L 109 (121)
T 1buo_A 48 ACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATLQ----------------AKAEDLDDLLYAAEILEIEYL 109 (121)
T ss_dssp HHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCCC----------------CCGGGHHHHHHHHHHHTCHHH
T ss_pred hhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCCcC----------------CCHHHHHHHHHHHHHHCCHHH
Confidence 45799999999864 567999999999999999999863221 334568999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040816 83 LDLLCQTVADMI 94 (128)
Q Consensus 83 ~~l~~~~ia~~i 94 (128)
.+.|++++...|
T Consensus 110 ~~~c~~~l~~~I 121 (121)
T 1buo_A 110 EEQCLKMLETIQ 121 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999997754
No 11
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.40 E-value=1.3e-06 Score=56.80 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=60.2
Q ss_pred hhhhHHHHHHHhcCCC--CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816 3 MLESQTIKHMVEDGCA--DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK 80 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~--~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~ 80 (128)
+..|...+.|+..... ...|.+|+++..+++.+++|+..-.- .++.+.+.+|+.||++++++
T Consensus 32 a~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~----------------~~~~~~~~~ll~~A~~~~~~ 95 (109)
T 2vkp_A 32 AVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI----------------DLEADTVLATLYAAKKYIVP 95 (109)
T ss_dssp HHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC----------------CCCTTTHHHHHHHHHHTTCH
T ss_pred HHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc----------------cCCHHHHHHHHHHHHHhCcH
Confidence 4579999999986431 27899999999999999999987322 13446788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040816 81 SLLDLLCQTVADM 93 (128)
Q Consensus 81 ~L~~l~~~~ia~~ 93 (128)
.|.+.|.+++...
T Consensus 96 ~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 96 ALAKACVNFLETS 108 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 12
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.35 E-value=3.3e-06 Score=58.88 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816 3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI 79 (128)
Q Consensus 3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i 79 (128)
+..|...+.|+.... ....|.+|+++..+++.+++|+....-. ++.+.+.+|+.+|+++++
T Consensus 54 ~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~----------------~~~~~~~~ll~~A~~~~~ 117 (172)
T 3htm_A 54 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP----------------NLDKMADDLLAAADKYAL 117 (172)
T ss_dssp HHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCT----------------TGGGTHHHHHHHHHHTTC
T ss_pred HHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCC----------------CcHHHHHHHHHHHHHhCc
Confidence 467999999999753 2578999999999999999999863321 334567899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHH
Q 040816 80 KSLLDLLCQTVADMIKGKSPEEI 102 (128)
Q Consensus 80 ~~L~~l~~~~ia~~i~gkt~eei 102 (128)
+.|.+.|.+++...+...+.-++
T Consensus 118 ~~l~~~c~~~l~~~l~~~n~~~~ 140 (172)
T 3htm_A 118 ERLKVMCEDALCSNLSVENAAEI 140 (172)
T ss_dssp HHHHHHHHHHHHHTCCTTTHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999987777666554
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.35 E-value=2.6e-06 Score=56.18 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=58.4
Q ss_pred hhhhHHHHHHHhcCCCCCceecC--CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLL--NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK 80 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~--~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~ 80 (128)
|..|...+.|+... ....|.|+ +++..+++.+++|+..-.-. ++.+.+.+|+.||++|+++
T Consensus 42 aa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~----------------~~~~~v~~ll~~A~~~~i~ 104 (116)
T 2vpk_A 42 ASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGTLN----------------LDSWNVKEIHQAADYLKVE 104 (116)
T ss_dssp HHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSCCC----------------CCTTTHHHHHHHHHHTTCH
T ss_pred hhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCCcc----------------cCHHHHHHHHHHHHHhCCH
Confidence 45799999999876 35556666 99999999999999863211 3345789999999999999
Q ss_pred HHHHHHHHHHH
Q 040816 81 SLLDLLCQTVA 91 (128)
Q Consensus 81 ~L~~l~~~~ia 91 (128)
.|.+.|++++.
T Consensus 105 ~L~~~C~~~l~ 115 (116)
T 2vpk_A 105 EVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998873
No 14
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.32 E-value=3.3e-06 Score=55.91 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816 3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI 79 (128)
Q Consensus 3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i 79 (128)
+..|...+.|+.... ....|.+++++..+++.+++|+..-.-. ++.+.+.+|+.||+++++
T Consensus 45 aa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~----------------~~~~~~~~ll~~A~~~~i 108 (120)
T 2if5_A 45 AACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLT----------------VSTANVGDILSAARLLEI 108 (120)
T ss_dssp HHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCC----------------CCGGGHHHHHHHHHHTTC
T ss_pred HHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCc----------------cCHHHHHHHHHHHHHhCC
Confidence 456999999998752 3568999999999999999999863221 345678999999999999
Q ss_pred HHHHHHHHHHH
Q 040816 80 KSLLDLLCQTV 90 (128)
Q Consensus 80 ~~L~~l~~~~i 90 (128)
++|.+.|.+++
T Consensus 109 ~~L~~~C~~~L 119 (120)
T 2if5_A 109 PAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 15
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.32 E-value=9.2e-07 Score=58.88 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=59.1
Q ss_pred hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL 82 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L 82 (128)
|..|...+.|+.... ...|.+|+++..+++.+++|+..-.-. ++.+.+.+|+.||++|+++.|
T Consensus 44 aa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~~----------------~~~~~v~~ll~~A~~~~i~~L 106 (119)
T 3b84_A 44 ACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHLA----------------LTSGNRDQVLLAARELRVPEA 106 (119)
T ss_dssp HHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCCC----------------CCTTTHHHHHHHHHHTTCHHH
T ss_pred hhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCCc----------------cCHHHHHHHHHHHHHhCcHHH
Confidence 456999999998754 678999999999999999999863221 334558899999999999999
Q ss_pred HHHHHHHHHH
Q 040816 83 LDLLCQTVAD 92 (128)
Q Consensus 83 ~~l~~~~ia~ 92 (128)
.+.|++++..
T Consensus 107 ~~~C~~~l~~ 116 (119)
T 3b84_A 107 VELCQSFKPK 116 (119)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.27 E-value=2.1e-06 Score=57.07 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL 82 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L 82 (128)
|..|...++|+... ...|.+++++..+++.+++|+..-.- .++.+.+.+|+.||++|+++.|
T Consensus 47 aa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~----------------~i~~~~~~~ll~~A~~l~i~~L 108 (119)
T 2q81_A 47 AACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAKL----------------SLSPENVDDVLAVATFLQMQDI 108 (119)
T ss_dssp HHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTCHHH
T ss_pred HHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCCC----------------ccCHHHHHHHHHHHHHhCCHHH
Confidence 45699999999873 56788999999999999999986322 1344568999999999999999
Q ss_pred HHHHHHHHH
Q 040816 83 LDLLCQTVA 91 (128)
Q Consensus 83 ~~l~~~~ia 91 (128)
.+.|+++++
T Consensus 109 ~~~C~~~l~ 117 (119)
T 2q81_A 109 ITACHALKS 117 (119)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999874
No 17
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.27 E-value=4e-06 Score=56.13 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=60.7
Q ss_pred hhhhHHHHHHHhcCCC--CCceec-CCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816 3 MLESQTIKHMVEDGCA--DSVIPL-LNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI 79 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~--~~~Ipl-~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i 79 (128)
|..|..+++|+..... ...|.| ++++..+++.+++|+..-.- .++.+.+.+|+.||++|++
T Consensus 49 aa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~----------------~~~~~~~~~ll~~A~~~~i 112 (127)
T 1r29_A 49 MACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL----------------NLREGNIMAVMATAMYLQM 112 (127)
T ss_dssp HHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTC
T ss_pred HHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc----------------CcCHHHHHHHHHHHHHhCC
Confidence 4579999999987542 567999 89999999999999976321 1345678999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040816 80 KSLLDLLCQTVAD 92 (128)
Q Consensus 80 ~~L~~l~~~~ia~ 92 (128)
+.|.+.|.+++..
T Consensus 113 ~~L~~~c~~~l~~ 125 (127)
T 1r29_A 113 EHVVDTCRKFIKA 125 (127)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998853
No 18
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.19 E-value=1.8e-06 Score=58.62 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816 3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI 79 (128)
Q Consensus 3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i 79 (128)
+..|..++.|+.... ....|.+|+++..+++.+++|+....-. ++.+.+.+|+.+|+++++
T Consensus 45 ~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~----------------~~~~~~~~ll~~A~~~~~ 108 (145)
T 4eoz_A 45 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP----------------NLDKMADDLLAAADKYAL 108 (145)
T ss_dssp HHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCT----------------TGGGTHHHHHHHHHHTTC
T ss_pred HHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccC----------------CcHHHHHHHHHHHHHhCH
Confidence 457999999998753 2468999999999999999999863321 234567899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCC
Q 040816 80 KSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112 (128)
Q Consensus 80 ~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~ 112 (128)
+.|.+.|++++...+...+ .-.++.+..-+
T Consensus 109 ~~l~~~c~~~l~~~l~~~n---~~~~l~~A~~~ 138 (145)
T 4eoz_A 109 ERLKVMCEDALCSNLSVEN---AAEILILADLH 138 (145)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHHHhCCHHH---HHHHHHHHHHh
Confidence 9999999999987665443 34444444443
No 19
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.17 E-value=1e-06 Score=59.38 Aligned_cols=73 Identities=11% Similarity=0.183 Sum_probs=55.5
Q ss_pred hhhhHHHHHHHhcCCCCCceecC-CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLL-NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKS 81 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~-~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~ 81 (128)
+..|...+.|+... ....|.+| +++..+++.+++|+..-.- .++.+.+.+|+.||++|+|+.
T Consensus 53 aa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~~----------------~i~~~~~~~ll~~A~~~~i~~ 115 (129)
T 3ga1_A 53 AASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGRL----------------SMNVGDQDLLMYTAGFLQIQE 115 (129)
T ss_dssp HHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSEE----------------ECCTTTHHHHHHHHHHTTBTT
T ss_pred HHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCcc----------------ccCHHHHHHHHHHHHHhCCHH
Confidence 45799999999987 56789998 8999999999999976322 234456899999999999999
Q ss_pred HHHHHHHHHHH
Q 040816 82 LLDLLCQTVAD 92 (128)
Q Consensus 82 L~~l~~~~ia~ 92 (128)
|.+.|++++..
T Consensus 116 l~~~C~~~L~~ 126 (129)
T 3ga1_A 116 IMEKGTEFFLK 126 (129)
T ss_dssp SSCC-------
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 20
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.14 E-value=3.9e-06 Score=57.79 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHhcCC-----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhc
Q 040816 3 MLESQTIKHMVEDGC-----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYL 77 (128)
Q Consensus 3 a~~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L 77 (128)
|..|..++.|+.... ....|.|++++..+++.+++|+..-.- .++.+.+.+|+.||++|
T Consensus 67 aa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~----------------~i~~~~v~~ll~~A~~l 130 (144)
T 2ppi_A 67 AAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI----------------RLNEDTIQDVVQAADLL 130 (144)
T ss_dssp HHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCC----------------CCCTTTHHHHHHHHHHT
T ss_pred HHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCC----------------CCCHHHHHHHHHHHHHh
Confidence 456999999998742 356899999999999999999975211 13456789999999999
Q ss_pred cHHHHHHHHHHHH
Q 040816 78 DIKSLLDLLCQTV 90 (128)
Q Consensus 78 ~i~~L~~l~~~~i 90 (128)
+++.|.+.|++++
T Consensus 131 ~i~~L~~~C~~~L 143 (144)
T 2ppi_A 131 LLTDLKTLCCEFL 143 (144)
T ss_dssp TCHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHh
Confidence 9999999998764
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.12 E-value=3.8e-06 Score=57.23 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=62.9
Q ss_pred hhhhHHHHHHHhcCCC-CCceecC-CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816 3 MLESQTIKHMVEDGCA-DSVIPLL-NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK 80 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~-~~~Ipl~-~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~ 80 (128)
|..|...+.|+..... ...|.+| +|+...++.+++|+..-.- .++.+.+.+|+.||++|+++
T Consensus 56 aa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~----------------~i~~~~v~~ll~~A~~~~i~ 119 (138)
T 2z8h_A 56 AACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKL----------------ILSKDNVDEVCRCVEFLSVH 119 (138)
T ss_dssp HHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHHTCG
T ss_pred HHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCc----------------ccCHHHHHHHHHHHHHhCCH
Confidence 4579999999987543 3578896 8999999999999987322 13456689999999999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 040816 81 SLLDLLCQTVADMIKG 96 (128)
Q Consensus 81 ~L~~l~~~~ia~~i~g 96 (128)
.|.+.|++++...+..
T Consensus 120 ~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 120 NIEESCFQFLKFKFLD 135 (138)
T ss_dssp GGHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998765543
No 22
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.09 E-value=6.6e-06 Score=61.20 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=61.3
Q ss_pred hhhhHHHHHHHhcCC-----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhc
Q 040816 3 MLESQTIKHMVEDGC-----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYL 77 (128)
Q Consensus 3 a~~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L 77 (128)
|..|...+.|+.... ....|++++++..+++.+++|+..-.-. ++.+.+.+|+.||++|
T Consensus 51 aa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~----------------i~~~~v~~ll~~A~~l 114 (256)
T 3hve_A 51 AAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR----------------LNEDTIQDVVQAADLL 114 (256)
T ss_dssp HTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCC----------------CC-CCHHHHHHHHHHH
T ss_pred HHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCc----------------ccHhHHHHHHHHHHHH
Confidence 446899999997642 2568999999999999999999863221 3445688999999999
Q ss_pred cHHHHHHHHHHHHHHHhcCCCHHH
Q 040816 78 DIKSLLDLLCQTVADMIKGKSPEE 101 (128)
Q Consensus 78 ~i~~L~~l~~~~ia~~i~gkt~ee 101 (128)
+++.|.+.|+.++...+.-.+.-+
T Consensus 115 ~i~~l~~~c~~~L~~~l~~~n~~~ 138 (256)
T 3hve_A 115 LLTDLKTLCCEFLEGCIAAENCIG 138 (256)
T ss_dssp TCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred ChHHHHHHHHHHHHhhCCHhhHHH
Confidence 999999999999887766554333
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=97.92 E-value=4.5e-05 Score=58.11 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=67.0
Q ss_pred hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816 3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI 79 (128)
Q Consensus 3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i 79 (128)
|..|...+.|+...- ....|.|++++..+++.+++|+....-. ++...+.+|+.||+++++
T Consensus 194 aa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~----------------~~~~~~~~ll~~A~~~~~ 257 (312)
T 3hqi_A 194 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP----------------NLDKMADDLLAAADKYAL 257 (312)
T ss_dssp HHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCT----------------THHHHHHHHHHHHHHTTC
T ss_pred HHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCC----------------ChHHHHHHHHHHHHHhCH
Confidence 567999999998642 3578999999999999999999763221 123788999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHH
Q 040816 80 KSLLDLLCQTVADMIKGKSPEEI 102 (128)
Q Consensus 80 ~~L~~l~~~~ia~~i~gkt~eei 102 (128)
+.|...|...+...+...+.-++
T Consensus 258 ~~l~~~c~~~l~~~~~~~n~~~~ 280 (312)
T 3hqi_A 258 ERLKVMCEDALCSNLSVENAAEI 280 (312)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHH
Confidence 99999999999877766665554
No 24
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=97.88 E-value=1.5e-05 Score=60.02 Aligned_cols=84 Identities=10% Similarity=0.118 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHhcCC---CCCceecC------CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHH
Q 040816 3 MLESQTIKHMVEDGC---ADSVIPLL------NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMA 73 (128)
Q Consensus 3 a~~S~~i~~~l~~~~---~~~~Ipl~------~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~A 73 (128)
|..|...+.|+.+.- ....|.++ +|+..+++.+++|+....-. ++.+.+.+|+.|
T Consensus 55 aa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~----------------i~~~~v~~ll~~ 118 (279)
T 3i3n_A 55 AAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR----------------VSTGSVHEVLEL 118 (279)
T ss_dssp HHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEE----------------EETTTHHHHHHH
T ss_pred HHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcc----------------cCHHHHHHHHHH
Confidence 345777888887642 24678888 89999999999999863321 334568899999
Q ss_pred hhhccHHHHHHHHHHHHHHHhcCCCHHHH
Q 040816 74 ANYLDIKSLLDLLCQTVADMIKGKSPEEI 102 (128)
Q Consensus 74 A~~L~i~~L~~l~~~~ia~~i~gkt~eei 102 (128)
|++|+++.|.+.|+.++...+...+.-.+
T Consensus 119 A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 119 ADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred HHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 99999999999999999888777665554
No 25
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=97.84 E-value=2.2e-06 Score=57.25 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHhcCCC-CCceecCC-CCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816 3 MLESQTIKHMVEDGCA-DSVIPLLN-VRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK 80 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~-~~~Ipl~~-v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~ 80 (128)
|..|...+.|+..... ...|.+|+ ++..+++.+++|+..-.- .++.+.+.+|+.||++|+|+
T Consensus 52 aa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~----------------~~~~~~v~~ll~~A~~l~i~ 115 (125)
T 3ohu_A 52 AACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKL----------------LLSRENIREVIRCAEFLRMH 115 (125)
T ss_dssp HHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEE----------------EECTTTHHHHHHHHHHHTBS
T ss_pred HHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCce----------------EECHHHHHHHHHHHHHhCCH
Confidence 4579999999987543 56799998 999999999999875221 24456689999999999999
Q ss_pred HHHHHHHHH
Q 040816 81 SLLDLLCQT 89 (128)
Q Consensus 81 ~L~~l~~~~ 89 (128)
.|.+.|+++
T Consensus 116 ~L~~~C~~~ 124 (125)
T 3ohu_A 116 NLEDSCFSF 124 (125)
T ss_dssp SCTTSSCCC
T ss_pred HHHHHHHHh
Confidence 999888653
No 26
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=97.74 E-value=3.8e-05 Score=51.29 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=47.2
Q ss_pred CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 040816 19 DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVAD 92 (128)
Q Consensus 19 ~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~ 92 (128)
...|.+++|+..+++.+++|+..-.- .++.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus 60 ~~~i~l~~v~~~~f~~ll~fiYtg~~----------------~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 60 GQWALGEGISPSTFAQLLNFVYGESV----------------ELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp EEEECCSSCCHHHHHHHHHHHTTCCE----------------EECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CCEEEeCCCCHHHHHHHHHHHcCCCc----------------CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 35688999999999999999875211 24566789999999999999999999998755
No 27
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=97.70 E-value=7.8e-05 Score=49.28 Aligned_cols=65 Identities=17% Similarity=0.311 Sum_probs=53.1
Q ss_pred hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816 3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL 82 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L 82 (128)
|..|...+.|+... ...|.+++++..+++.+++|+..-. ++ .++.+.+.+|+.||++|+|+.|
T Consensus 51 aa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~--------~~-------~~~~~~~~~ll~~A~~l~i~~L 113 (116)
T 3fkc_A 51 SASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSK--------IV-------RVRSDLLDELIKSGQLLGVKFI 113 (116)
T ss_dssp HHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSC--------CC-------SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCC--------cC-------CCCHHHHHHHHHHHHHhCcccc
Confidence 45789999999865 5689999999999999999987522 11 2456788999999999999998
Q ss_pred HH
Q 040816 83 LD 84 (128)
Q Consensus 83 ~~ 84 (128)
.+
T Consensus 114 ~~ 115 (116)
T 3fkc_A 114 AA 115 (116)
T ss_dssp HT
T ss_pred Cc
Confidence 75
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=97.64 E-value=1e-05 Score=54.10 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHhcCCC-CCceecC-CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816 3 MLESQTIKHMVEDGCA-DSVIPLL-NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK 80 (128)
Q Consensus 3 a~~S~~i~~~l~~~~~-~~~Ipl~-~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~ 80 (128)
|..|...+.|+..... ...|.+| +|+...++.+++|+..-.- .++.+.+.+|+.||++|+++
T Consensus 49 aa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~----------------~i~~~~v~~ll~~A~~~~~~ 112 (124)
T 2ihc_A 49 AACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKL----------------ILSKENVDEVCKCVEFLSVH 112 (124)
T ss_dssp HHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEE----------------EEETTTHHHHHHHHHHHTBS
T ss_pred HHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCc----------------ccCHHHHHHHHHHHHHHCCH
Confidence 4579999999987542 4578886 8999999999999987322 13345689999999999999
Q ss_pred HHHHHHHHHH
Q 040816 81 SLLDLLCQTV 90 (128)
Q Consensus 81 ~L~~l~~~~i 90 (128)
.|.+.|++++
T Consensus 113 ~L~~~C~~~l 122 (124)
T 2ihc_A 113 NIEESCFQFL 122 (124)
T ss_dssp SCCGGGGGTC
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=76.68 E-value=11 Score=23.90 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=40.8
Q ss_pred CceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 040816 20 SVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVAD 92 (128)
Q Consensus 20 ~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~ 92 (128)
..+=+ +-++..++.|+.|+..-+-. +++ ++. ...+...|.|.+|.+|++.+-..|..
T Consensus 50 ~~~fi-DRdp~~F~~IL~~lr~g~l~------~p~------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 50 GAYLI-DRDPTYFGPVLNYLRHGKLV------INK------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp SCEEE-CSCHHHHHHHHHHHHHSCCC------CCT------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ceEEe-cCChHHHHHHHHHhCCCeeC------CCC------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34444 78999999999999874322 111 011 24578899999999999999887753
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=71.11 E-value=5.4 Score=25.35 Aligned_cols=35 Identities=14% Similarity=0.519 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHhh
Q 040816 88 QTVADMIKGKSPEEIRQTFH------IQ-NDFTPEEEEEIRT 122 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~------i~-~d~t~eee~~i~~ 122 (128)
..||..+.|+|+.+.|+.+. |. ..+|+||.+.+..
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 57888899999999988753 32 4599999887655
No 31
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=67.00 E-value=3.6 Score=22.75 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=26.9
Q ss_pred HHHhcC-CCHHHHHhhcCCCCCCCHHHHHHHhhhCCCC
Q 040816 91 ADMIKG-KSPEEIRQTFHIQNDFTPEEEEEIRTETPRA 127 (128)
Q Consensus 91 a~~i~g-kt~eeir~~f~i~~d~t~eee~~i~~e~~W~ 127 (128)
-.+..| -+.++||+..+ ..|+|++|-.+| .++||-
T Consensus 12 D~W~~GT~~~~~mR~AV~-~G~iTQ~E~D~I-~~ypwg 47 (51)
T 2xf7_A 12 DSWLDGTASEELLRVAVN-AGDLTQEEADKI-MSYPWG 47 (51)
T ss_dssp HHHHHTCCCHHHHHHHHH-HTSSCHHHHHHH-HTSCTT
T ss_pred HHHhcchhhHHHHHHHHh-cCcccHHHHHHH-HhCccc
Confidence 345666 48899999887 368999999888 578883
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=66.79 E-value=4.6 Score=25.44 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCHHHHHhhcC------C-CCCCCHHHHHHHhh
Q 040816 88 QTVADMIKGKSPEEIRQTFH------I-QNDFTPEEEEEIRT 122 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~------i-~~d~t~eee~~i~~ 122 (128)
..||..+.|+|+.+.|..+. + ...+|+||.+.+..
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 57888889999999988763 2 23589998887765
No 33
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=65.77 E-value=4 Score=24.75 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57899999999999976553
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=65.05 E-value=10 Score=24.74 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCCHHHHHhhcC------C-CCCCCHHHHHHHhh
Q 040816 87 CQTVADMIKGKSPEEIRQTFH------I-QNDFTPEEEEEIRT 122 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~------i-~~d~t~eee~~i~~ 122 (128)
=..||..+.|+|..++|..+. + ...+|+||.+.+.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 367888999999999988763 2 23589998877654
No 35
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=64.35 E-value=2.1 Score=20.74 Aligned_cols=12 Identities=50% Similarity=0.686 Sum_probs=9.4
Q ss_pred HHHHHHHhhhcc
Q 040816 67 LFDLLMAANYLD 78 (128)
Q Consensus 67 l~~li~AA~~L~ 78 (128)
+--|+.||.||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345789999997
No 36
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=61.71 E-value=2.1 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.547 Sum_probs=30.3
Q ss_pred cChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCC
Q 040816 62 LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQN 110 (128)
Q Consensus 62 ~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~ 110 (128)
-..+.+|+-..|..=-+-+.-. ..||..+-|||++|+++.+.++.
T Consensus 25 ~eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 25 FSENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp TTHHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC---
T ss_pred HHHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHhh
Confidence 4567788877766543333222 47888889999999999988753
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=60.86 E-value=5.8 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||..+ |||++|+++.+.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 4567766 899999988764
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=59.79 E-value=6.2 Score=25.10 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
.+||.++.+||++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45899999999999999884
No 39
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=59.66 E-value=18 Score=23.05 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=40.9
Q ss_pred cChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCC--CHHHHHhhcCCCC
Q 040816 62 LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGK--SPEEIRQTFHIQN 110 (128)
Q Consensus 62 ~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gk--t~eeir~~f~i~~ 110 (128)
++.+..-.|......|..+.+.....+.++..-.|+ |.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 566666677777788888899999999998888886 8999999999875
No 40
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=56.37 E-value=14 Score=24.01 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCHHHHHhhcC------CCC-CCCHHHHHHHhh
Q 040816 87 CQTVADMIKGKSPEEIRQTFH------IQN-DFTPEEEEEIRT 122 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~------i~~-d~t~eee~~i~~ 122 (128)
=..||..+.|+|+.+.|+.+. +.. .+|+||.+.+..
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 467888899999999988753 333 589998887654
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=54.45 E-value=6.5 Score=25.90 Aligned_cols=35 Identities=26% Similarity=0.583 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCHHHHHhhc------CCCC-CCCHHHHHHHhh
Q 040816 88 QTVADMIKGKSPEEIRQTF------HIQN-DFTPEEEEEIRT 122 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f------~i~~-d~t~eee~~i~~ 122 (128)
..||..+.|+|+.+.|+.+ ++.. .+|+||.+.+..
T Consensus 26 ~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 26 PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 3667778899999998876 3443 599999887654
No 42
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=52.99 E-value=8.3 Score=24.30 Aligned_cols=20 Identities=30% Similarity=0.791 Sum_probs=17.7
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||..+-|||.+|+|..+.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 67899999999999998775
No 43
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.70 E-value=10 Score=21.50 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||..+.|+|+.++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 67888999999999998763
No 44
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=52.63 E-value=14 Score=28.16 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=62.9
Q ss_pred CceecCCCCHHHHHHHHHHHHhcccCC---------CCcccccchhh--hhhccChH--HHHHHHHHhhhccHHHHHHHH
Q 040816 20 SVIPLLNVRGTILSMVIEYLKKHVEAK---------TTEDDLKNWDV--DFAKLGQD--TLFDLLMAANYLDIKSLLDLL 86 (128)
Q Consensus 20 ~~Ipl~~v~~~~L~~Vi~~c~~h~~~~---------~~~~~~~~wd~--~Fl~~~~~--~l~~li~AA~~L~i~~L~~l~ 86 (128)
....++.-+--.-.-|+.|+.-+--.. ...++..+|-. .|-.+..+ ..+..+.|..--++.+|+...
T Consensus 189 ~~~Q~~~~d~~~T~NVvAwLYAAilng~~Wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI 268 (306)
T 3tnt_A 189 QTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAAL 268 (306)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHH
T ss_pred hhhhccCccceeehhHHHHHHHHHhcCCeEEeeccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHH
Confidence 334444444444556788886654432 12233445533 24335543 458999999999999999888
Q ss_pred HHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHH
Q 040816 87 CQTVADMIKGKSPEEIRQTFHIQNDFTPEEEE 118 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~ 118 (128)
-+.+.+=..||+ |--...++++|||+|--
T Consensus 269 ~~ll~~g~~G~~---IlG~~~leDE~Tp~~V~ 297 (306)
T 3tnt_A 269 KELLQNGMNGRT---ILGSTILEDEFTPFDVV 297 (306)
T ss_dssp HHHHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred HHHHhcCcCCce---eeccccccccCCHHHHH
Confidence 877777677887 66667788999997754
No 45
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=51.04 E-value=6.8 Score=24.58 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=16.8
Q ss_pred CCCHHHHHhhcCCCCCCC
Q 040816 96 GKSPEEIRQTFHIQNDFT 113 (128)
Q Consensus 96 gkt~eeir~~f~i~~d~t 113 (128)
|.||+|=|+.+|++.|+.
T Consensus 43 gltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 43 SMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp CSCHHHHHHHTTCGGGCC
T ss_pred CCCHHHHHHHhCCCCCCc
Confidence 899999999999999874
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=48.27 E-value=21 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=13.9
Q ss_pred HHHHHh-----cCCCHHHHHhhc
Q 040816 89 TVADMI-----KGKSPEEIRQTF 106 (128)
Q Consensus 89 ~ia~~i-----~gkt~eeir~~f 106 (128)
.|++.. .++|.|+|+..|
T Consensus 54 vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 54 VIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eehhhhccCCCCCCCHHHHHHHH
Confidence 677777 478999998765
No 47
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.13 E-value=11 Score=21.44 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=16.2
Q ss_pred HHHHHHhcCCCHHHHHhhc
Q 040816 88 QTVADMIKGKSPEEIRQTF 106 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f 106 (128)
..||..+.|||+.++++++
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 5678889999999998775
No 48
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=47.35 E-value=18 Score=24.45 Aligned_cols=36 Identities=25% Similarity=0.504 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCHHHHHhhcC------CC-CCCCHHHHHHHhh
Q 040816 87 CQTVADMIKGKSPEEIRQTFH------IQ-NDFTPEEEEEIRT 122 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~------i~-~d~t~eee~~i~~ 122 (128)
=..||..+.|+|..++|..+. +. ..+|+||...+.+
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 357888999999999988764 22 3589988887654
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=47.05 E-value=13 Score=22.50 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcC
Q 040816 63 GQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 63 ~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~ 107 (128)
..++-.-|+.|-.-.+ . -=..||..+.++|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 3444444555544444 1 2367899999999999998875
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.89 E-value=6.1 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
=..||..+-|+|..|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 367899999999999998764
No 51
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=45.66 E-value=20 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=24.1
Q ss_pred HHHHhhhccHHHHH-HHHHHHHHHHhcCCCHHHHHhhcC
Q 040816 70 LLMAANYLDIKSLL-DLLCQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 70 li~AA~~L~i~~L~-~l~~~~ia~~i~gkt~eeir~~f~ 107 (128)
.|..+.|-.-=--. -.++..++.+++|||.+|.+++.+
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34444444433233 344456688999999999988754
No 52
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.64 E-value=53 Score=20.47 Aligned_cols=44 Identities=9% Similarity=0.061 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHH
Q 040816 26 NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMA 73 (128)
Q Consensus 26 ~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~A 73 (128)
++....+.+|++|+..|...+. .+.+. ++-+.++...|..++..
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~---~~~~l-A~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 3 ALQPNMRTRVCTVINNNIAHEW---TLARI-ASELLMSPSLLKKKLRE 46 (120)
T ss_dssp --CCCHHHHHHHHHHTSTTSCC---CHHHH-HHHTTCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccCCC---CHHHH-HHHHCcCHHHHHHHHHH
Confidence 3556678899999988876531 23332 23344556666665554
No 53
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=51.45 E-value=4.4 Score=24.39 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCCHHHHHhhcC
Q 040816 86 LCQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 86 ~~~~ia~~i~gkt~eeir~~f~ 107 (128)
+-..||.++ +||++|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 446788888 899999988875
No 54
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=45.30 E-value=22 Score=23.74 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=17.0
Q ss_pred HHHHHHHHhcCCCHHHHHhhc
Q 040816 86 LCQTVADMIKGKSPEEIRQTF 106 (128)
Q Consensus 86 ~~~~ia~~i~gkt~eeir~~f 106 (128)
++..++.+++|||.+|.++..
T Consensus 70 SaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 70 SASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp HHHHHHHHHTTSBHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHH
Confidence 345668899999999998876
No 55
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=45.28 E-value=21 Score=28.70 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 040816 86 LCQTVADMIKGKSPEEIRQTFHIQNDFTP 114 (128)
Q Consensus 86 ~~~~ia~~i~gkt~eeir~~f~i~~d~t~ 114 (128)
+-.-|..+|.-||||||-+.+|++.|-.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDESQ 192 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccchH
Confidence 34556788999999999999999988654
No 56
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=45.14 E-value=16 Score=24.17 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcccCCCCcccccchhhhhhc--cChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc
Q 040816 28 RGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAK--LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIK 95 (128)
Q Consensus 28 ~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~--~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~ 95 (128)
+...+..++.-..+..-. .+...-.+|+. ++.+..++++..|...+.+.|.+.|.++|+..+.
T Consensus 101 ~~~~~~~ll~~A~~~~~~-----~l~~~c~~~l~~~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 101 LDKMADDLLAAADKYALE-----RLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp GGGTHHHHHHHHHHTTCH-----HHHHHHHHHHHHTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHHHHhCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 334455556555554432 34455566664 6788899999999999999999999999987554
No 57
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=44.24 E-value=17 Score=20.45 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=16.8
Q ss_pred HHHHHHHhc-CCCHHHHHhhc
Q 040816 87 CQTVADMIK-GKSPEEIRQTF 106 (128)
Q Consensus 87 ~~~ia~~i~-gkt~eeir~~f 106 (128)
=..||..+. |+|+.+.|..+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 367888998 99999999865
No 58
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.63 E-value=16 Score=21.50 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHhhc
Q 040816 87 CQTVADMIKGKSPEEIRQTF 106 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f 106 (128)
=..||..+.|+|..++|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46788899999999999876
No 59
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=43.28 E-value=24 Score=23.81 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=24.2
Q ss_pred HHHHhhhccHHHHHHHH-HHHHHHHhcCCCHHHHHhhcC
Q 040816 70 LLMAANYLDIKSLLDLL-CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 70 li~AA~~L~i~~L~~l~-~~~ia~~i~gkt~eeir~~f~ 107 (128)
.|..+.|-.-=--.-.+ +..++.+++|||.+|.+++.+
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34444444433333333 455688999999999988764
No 60
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=42.72 E-value=16 Score=22.38 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=21.1
Q ss_pred cChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCH-----HHHHhhcCCC
Q 040816 62 LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSP-----EEIRQTFHIQ 109 (128)
Q Consensus 62 ~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~-----eeir~~f~i~ 109 (128)
++.+..-.+....+.|..+.+.+-..+.++..-.|++. +|+++.+|+.
T Consensus 38 ~s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 38 MSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EEHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eeHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 34444555566667777888887777777776666644 8899999975
No 61
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}
Probab=41.35 E-value=18 Score=27.44 Aligned_cols=95 Identities=18% Similarity=0.312 Sum_probs=60.8
Q ss_pred CceecCCCCHHHHHHHHHHHHhcccCCC---------Ccccccchhh--hhhccChHHHHHHHHHhhhccHHHHHHHHHH
Q 040816 20 SVIPLLNVRGTILSMVIEYLKKHVEAKT---------TEDDLKNWDV--DFAKLGQDTLFDLLMAANYLDIKSLLDLLCQ 88 (128)
Q Consensus 20 ~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---------~~~~~~~wd~--~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~ 88 (128)
....++.-+--.-.-|+.|+.-+--... ..++..+|-. .|-++.....++.+.|..-.++.+|+...-+
T Consensus 191 ~~~Q~~~~d~~~T~NVvA~LYAAilng~~Wf~~~~~~s~~~fN~WA~~ngft~~~~~~~~~~Laa~TgVsVe~lLaaI~~ 270 (302)
T 3d23_B 191 QVVQLPVKDYVQTVNVIAWLYAAILNNCAWFVQNDVCSTEDFNVWAMANGFSQVKADLVLDALASMTGVSIETLLAAIKR 270 (302)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCSCCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred hhhhccCccceeehhHHHHHHHHHHcCCceeeccceecHHHHHHHHHhCCcccccchhHHHHHHHHhCCcHHHHHHHHHH
Confidence 3444554444455678888876554321 2334455633 3445666678999999999999999875544
Q ss_pred HHHHHhcCCCHHHHHhhcCCCCCCCHHHHH
Q 040816 89 TVADMIKGKSPEEIRQTFHIQNDFTPEEEE 118 (128)
Q Consensus 89 ~ia~~i~gkt~eeir~~f~i~~d~t~eee~ 118 (128)
. +.-..||+ |--...++++|||+|--
T Consensus 271 L-~~gf~G~~---IlG~~~leDE~Tp~~V~ 296 (302)
T 3d23_B 271 L-YMGFQGRQ---ILGSCTFEDELAPSDVY 296 (302)
T ss_dssp H-HTCCTTCC---BTTBSSCCCSSCHHHHH
T ss_pred H-hcCCCCce---eeccccccccCCHHHHH
Confidence 3 54445554 55566688899998754
No 62
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=41.02 E-value=18 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCCHHHHHhhcCC
Q 040816 87 CQTVADMIKGKSPEEIRQTFHI 108 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~i 108 (128)
++.+|+.|+||+++|-..++..
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~f 34 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLEF 34 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4678999999999999888873
No 63
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=40.45 E-value=13 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhcc
Q 040816 66 TLFDLLMAANYLD 78 (128)
Q Consensus 66 ~l~~li~AA~~L~ 78 (128)
.-|..+.|||+|-
T Consensus 6 K~f~av~Aanrl~ 18 (22)
T 3kf9_B 6 KNFIAVSAANRFK 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3467788998873
No 64
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=40.20 E-value=32 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHHHhhhccHHHHHHHH-HHHHHHHhcCCCHHHHHhhcC
Q 040816 70 LLMAANYLDIKSLLDLL-CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 70 li~AA~~L~i~~L~~l~-~~~ia~~i~gkt~eeir~~f~ 107 (128)
.|..+.|-.-=--.-.+ +..++.+++|||.+|.+++.+
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 34444444433333333 455688999999999988764
No 65
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=39.16 E-value=11 Score=28.69 Aligned_cols=94 Identities=15% Similarity=0.269 Sum_probs=59.5
Q ss_pred ceecCCCCHHHHHHHHHHHHhcccCC---------CCcccccchhh--hhhccChHHHHHHHHHhhhccHHHHHHHHHHH
Q 040816 21 VIPLLNVRGTILSMVIEYLKKHVEAK---------TTEDDLKNWDV--DFAKLGQDTLFDLLMAANYLDIKSLLDLLCQT 89 (128)
Q Consensus 21 ~Ipl~~v~~~~L~~Vi~~c~~h~~~~---------~~~~~~~~wd~--~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ 89 (128)
...++.-+--.-.-|+.|+.-+--+. ...++..+|-. .|-.......+.++.|..-.++.+|+...-+
T Consensus 190 v~Q~~~~d~~~T~NVvAwLYAAilng~~wfl~~~~~sv~dfN~WA~~ngft~~~~~~~~~~Laa~TGVsV~~lL~aI~~- 268 (303)
T 3tlo_A 190 SLQVESANLMLSDNVVAFLYAALLNGCRWWLCSTRVNVDGFNEWAMANGYTSVSSVECYSILAAKTGVSVEQLLASIQH- 268 (303)
T ss_dssp CCCCCCCCCBCHHHHHHHHHHHHHTTCCTTCCCCCCCHHHHHHHHHHHTBCCCCCSGGGHHHHHHHTCCHHHHHHHHHH-
T ss_pred hhcccCccceeehhHHHHHHHHHHcCCCeeeccceecHHHHHHHHHhcCccccccchHHHHHHHHhCCcHHHHHHHHHH-
Confidence 33444444444556788887655432 12334455633 3444666678999999999999999876654
Q ss_pred HHHHhcCCCHHHHHhhcCCCCCCCHHHHH
Q 040816 90 VADMIKGKSPEEIRQTFHIQNDFTPEEEE 118 (128)
Q Consensus 90 ia~~i~gkt~eeir~~f~i~~d~t~eee~ 118 (128)
++.-..|++ |--...++++|||+|--
T Consensus 269 L~~g~~G~~---IlG~~~leDE~Tp~~V~ 294 (303)
T 3tlo_A 269 LHEGFGGKN---ILGYSSLCDEFTLAEVV 294 (303)
T ss_dssp HTTCCTTCC---BTTBSSCCCCCCHHHHH
T ss_pred HhcCCCCce---ecccccccccCCHHHHH
Confidence 544444554 55566788899998754
No 66
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=37.98 E-value=20 Score=23.04 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCHHHHHhhcCC
Q 040816 87 CQTVADMIKGKSPEEIRQTFHI 108 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~i 108 (128)
++.+|+.|+||+++|-..++..
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~ 38 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY 38 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4678999999999998877764
No 67
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=37.49 E-value=22 Score=22.33 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=12.9
Q ss_pred HHHHHhc-CCCHHHHHhhc
Q 040816 89 TVADMIK-GKSPEEIRQTF 106 (128)
Q Consensus 89 ~ia~~i~-gkt~eeir~~f 106 (128)
.|..++. |+|.+||+.+|
T Consensus 48 ~Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 48 KVYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3444444 99999998875
No 68
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=37.18 E-value=33 Score=20.97 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhcccCC------------------CCcccccchhhhhhc
Q 040816 27 VRGTILSMVIEYLKKHVEAK------------------TTEDDLKNWDVDFAK 61 (128)
Q Consensus 27 v~~~~L~~Vi~~c~~h~~~~------------------~~~~~~~~wd~~Fl~ 61 (128)
.+..+++|.++-|..|+.++ ++...+..|+++|++
T Consensus 19 c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~~~~~lt~~~L~~fE~e~l~ 71 (78)
T 4e2i_2 19 CEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSFEHEFLS 71 (78)
T ss_dssp CCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHTTCCCCCTTTTTGGGTTTSG
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 33456666666666655542 355667888888875
No 69
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=36.78 E-value=23 Score=21.88 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=12.9
Q ss_pred HHHHHhc-CCCHHHHHhhc
Q 040816 89 TVADMIK-GKSPEEIRQTF 106 (128)
Q Consensus 89 ~ia~~i~-gkt~eeir~~f 106 (128)
.|-.++. |+|.+||+.+|
T Consensus 51 ~V~~~l~~G~sd~eI~~~~ 69 (84)
T 2hl7_A 51 QIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3444444 99999998875
No 70
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=35.36 E-value=19 Score=19.40 Aligned_cols=19 Identities=5% Similarity=0.350 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCHHHHHhhc
Q 040816 88 QTVADMIKGKSPEEIRQTF 106 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f 106 (128)
..||..+.|+|+.++|..+
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw 45 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRW 45 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 6788888999999998765
No 71
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=35.10 E-value=24 Score=22.68 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
++.+|+.|+|+++++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 467899999999999888776
No 72
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=35.00 E-value=20 Score=26.68 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=14.8
Q ss_pred CHHHHHhhcCCCCCCCHHHHHHH
Q 040816 98 SPEEIRQTFHIQNDFTPEEEEEI 120 (128)
Q Consensus 98 t~eeir~~f~i~~d~t~eee~~i 120 (128)
|++|+|+.+++-.||.+|+-.++
T Consensus 239 s~~E~r~il~lRvDf~~e~I~~l 261 (263)
T 3hr0_A 239 TPAEVRQVLALRIDFRSEDIKRL 261 (263)
T ss_dssp CHHHHHHHHTTBTTSCHHHHHHC
T ss_pred CHHHHHHHHHhhccCCHHHHHhc
Confidence 66666666666666666655544
No 73
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=34.85 E-value=8.8 Score=29.12 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=24.9
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCC
Q 040816 68 FDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112 (128)
Q Consensus 68 ~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~ 112 (128)
-.++.||..+++-.. .+.|-.++++|+.||||+++
T Consensus 246 ~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 246 GNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCC
Confidence 356666666665431 34577899999999999875
No 74
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=34.55 E-value=33 Score=19.90 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=16.4
Q ss_pred CCHHHHHhhcCCCCC---CCHHHHH
Q 040816 97 KSPEEIRQTFHIQND---FTPEEEE 118 (128)
Q Consensus 97 kt~eeir~~f~i~~d---~t~eee~ 118 (128)
+|.+|-+++|||+.+ .+.++..
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik 25 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKIN 25 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHH
Confidence 477888999999877 6665443
No 75
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=34.27 E-value=27 Score=20.32 Aligned_cols=20 Identities=5% Similarity=0.218 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHhhc
Q 040816 87 CQTVADMIKGKSPEEIRQTF 106 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f 106 (128)
=..||..+.|+|..++|..+
T Consensus 31 W~~Ia~~~~~Rt~~q~k~r~ 50 (72)
T 2cu7_A 31 WTKISKLIGSRTVLQVKSYA 50 (72)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 36789999999999999875
No 76
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=34.10 E-value=26 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCHHHHHhhcC
Q 040816 85 LLCQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 85 l~~~~ia~~i~gkt~eeir~~f~ 107 (128)
.++..++.+++|||.+|.+++.+
T Consensus 68 ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 68 AVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp HHHHHHHHHHTTSBHHHHHHCCH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHh
Confidence 34456788999999999988755
No 77
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=32.99 E-value=57 Score=18.44 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=16.3
Q ss_pred HHHHHHhcCCCHHHHHhhcCCC
Q 040816 88 QTVADMIKGKSPEEIRQTFHIQ 109 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~i~ 109 (128)
..+.-...|+|.+||-+.+|++
T Consensus 23 ~vl~l~~~g~s~~eIA~~l~is 44 (79)
T 1x3u_A 23 QVLSAVVAGLPNKSIAYDLDIS 44 (79)
T ss_dssp HHHHHHTTTCCHHHHHHHTTSC
T ss_pred HHHHHHHcCCCHHHHHHHHCcC
Confidence 3333346789999999999985
No 78
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.97 E-value=43 Score=16.55 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=13.9
Q ss_pred HhcCCCHHHHHhhcCCC
Q 040816 93 MIKGKSPEEIRQTFHIQ 109 (128)
Q Consensus 93 ~i~gkt~eeir~~f~i~ 109 (128)
...|.|..+|-+.|||+
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34688999999999985
No 79
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=32.93 E-value=32 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHhhc
Q 040816 84 DLLCQTVADMIKGKSPEEIRQTF 106 (128)
Q Consensus 84 ~l~~~~ia~~i~gkt~eeir~~f 106 (128)
..++..++.+++|||.+|.+++.
T Consensus 62 ~ASaS~mtelv~GKtleEA~~i~ 84 (153)
T 4eb5_C 62 IATSSMATEMAKGKTIEEALKIT 84 (153)
T ss_dssp HHHHHHHHHHHTTCBHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHhh
Confidence 34445668899999999987654
No 80
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=32.15 E-value=19 Score=25.92 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.9
Q ss_pred HHHHHHHhcccCC
Q 040816 34 MVIEYLKKHVEAK 46 (128)
Q Consensus 34 ~Vi~~c~~h~~~~ 46 (128)
.|+.||+||+-..
T Consensus 33 LIL~ycr~~ki~~ 45 (202)
T 1xb4_A 33 IISQYCKTKKIWY 45 (202)
T ss_dssp HHHHHHHHTTCCE
T ss_pred HHHHHHHHhCeeE
Confidence 4999999998863
No 81
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=31.75 E-value=85 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=10.5
Q ss_pred cChHHHHHHHHHhhh
Q 040816 62 LGQDTLFDLLMAANY 76 (128)
Q Consensus 62 ~~~~~l~~li~AA~~ 76 (128)
++++++..+..||++
T Consensus 35 Lt~~el~~f~~AaDH 49 (72)
T 1jw2_A 35 LSDNELAVFYSAADH 49 (72)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555677777777775
No 82
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=31.69 E-value=29 Score=19.32 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
=..||..+.|+|..++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 31 WKFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHH
Confidence 367888899999999998764
No 83
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=30.91 E-value=34 Score=20.38 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
=..||..+ |+|..++|..+.
T Consensus 45 W~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 45 WATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 36789989 999999998875
No 84
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=30.59 E-value=48 Score=22.67 Aligned_cols=34 Identities=12% Similarity=0.345 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHh--------hcCCCCCCCHH
Q 040816 82 LLDLLCQTVADMIKGKSPEEIRQ--------TFHIQNDFTPE 115 (128)
Q Consensus 82 L~~l~~~~ia~~i~gkt~eeir~--------~f~i~~d~t~e 115 (128)
++.-.+..+...++|+||+||.+ .+|+...+||-
T Consensus 87 IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 87 IVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 44455566677789999999953 45777777773
No 85
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=30.05 E-value=47 Score=21.83 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhhcCCCCC
Q 040816 82 LLDLLCQTVADMIKGKSPEEIRQTFHIQND 111 (128)
Q Consensus 82 L~~l~~~~ia~~i~gkt~eeir~~f~i~~d 111 (128)
+.+-.|..++ .|.|..+|.+.+|+|+-
T Consensus 17 ~~e~I~~~i~---~G~sl~~i~~~~~~ps~ 43 (140)
T 4dyq_A 17 VADDICSLLS---SGESLLKVCKRPGMPDK 43 (140)
T ss_dssp HHHHHHHHHH---TTCCHHHHHTSTTCCCH
T ss_pred HHHHHHHHHH---CCCcHHHHHhcCCCCCH
Confidence 4455565554 69999999999999743
No 86
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=29.62 E-value=21 Score=19.29 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=16.8
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||..+.|+|..++|..+.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 27 SVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888889999999998764
No 87
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=29.53 E-value=28 Score=26.59 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=31.0
Q ss_pred ccChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcC
Q 040816 61 KLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 61 ~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~ 107 (128)
+++.......++|+---+-.. ...||.-+.|||++|+++++.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHH
Confidence 367777888888865555433 356777788999999998875
No 88
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=29.50 E-value=76 Score=19.82 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhc---------cHHHHHHHHHHHHHHHhcCC--CHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816 65 DTLFDLLMAANYL---------DIKSLLDLLCQTVADMIKGK--SPEEIRQTFHIQNDFTPEEEEEIRTETPRAF 128 (128)
Q Consensus 65 ~~l~~li~AA~~L---------~i~~L~~l~~~~ia~~i~gk--t~eeir~~f~i~~d~t~eee~~i~~e~~W~f 128 (128)
+.+.+++..|+-| +-+.++-.-+..+.-...|+ |..-.|++++ ++|++|.+++..++.|-|
T Consensus 6 E~v~eIia~aSiLIKfg~ddIle~q~~FIaFLNElG~t~~G~~~t~~sfr~m~~---~lt~~ek~elieeFn~G~ 77 (90)
T 1jr5_A 6 DTVREIITVASILIKFSREDIVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVS---ELTQEDKKTLIDEFNEGF 77 (90)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTCHHHHHHHHHHHTCCSSSSCCCSHHHHHHHH---TCCHHHHHHHHTTSSSSS
T ss_pred HHHHHHHHHHHHHHHcChHHHHHhHHHHHHHHHHcCCCCCcchhHHHHHHHHHH---HCCHHHHHHHHHHHhccc
Confidence 3455666655432 33334433344444444565 5666788876 789999999999988743
No 89
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=29.18 E-value=61 Score=23.27 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCC-CCHHHHHHH
Q 040816 80 KSLLDLLCQTVADMIKGKSPEEIRQTFHIQND-FTPEEEEEI 120 (128)
Q Consensus 80 ~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d-~t~eee~~i 120 (128)
-.|+-.+|-.||.++.+..|-.++++..+.++ +|.+|-.+.
T Consensus 94 lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 94 LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 35888899999999987644456666666654 888765443
No 90
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=28.82 E-value=64 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=13.2
Q ss_pred HHHHHHhc-----CCCHHHHHhhc
Q 040816 88 QTVADMIK-----GKSPEEIRQTF 106 (128)
Q Consensus 88 ~~ia~~i~-----gkt~eeir~~f 106 (128)
-.|++... ++|+|+|+..|
T Consensus 53 ~vI~DRy~~~~~~~RtvEdLK~RY 76 (93)
T 4iej_A 53 VVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHCCTTTSCCCCHHHHHHHH
T ss_pred EEEeeccccCCCCCCCHHHHHHHH
Confidence 35666654 57999998765
No 91
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=28.68 E-value=31 Score=23.11 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHhhcCC
Q 040816 87 CQTVADMIKGKSPEEIRQTFHI 108 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~i 108 (128)
++.||+.|+|+++++-..+|..
T Consensus 38 ~r~Va~~IRG~~v~eAl~~L~f 59 (134)
T 2zjr_P 38 VRLVVDVIRGKSVQDAEDLLRF 59 (134)
T ss_dssp HHHHHHHSTTSBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4578899999999888777654
No 92
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=28.67 E-value=76 Score=17.25 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCHHHHHh
Q 040816 86 LCQTVADMIKGKSPEEIRQ 104 (128)
Q Consensus 86 ~~~~ia~~i~gkt~eeir~ 104 (128)
-++.++.+|+.+.|++++.
T Consensus 9 kSk~L~~Ll~s~~P~Dlq~ 27 (45)
T 1j2j_B 9 KSKMLARLLKSSHPEDLRA 27 (45)
T ss_dssp HHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHH
Confidence 4678899999999998764
No 93
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=28.59 E-value=70 Score=18.36 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.0
Q ss_pred CCCHHHHHhhcCCCC-CCCHHHHH
Q 040816 96 GKSPEEIRQTFHIQN-DFTPEEEE 118 (128)
Q Consensus 96 gkt~eeir~~f~i~~-d~t~eee~ 118 (128)
++|.++-.++|||+. +.|.+|..
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk 33 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLK 33 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHH
Confidence 468889999999997 68876544
No 94
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=28.20 E-value=22 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=19.8
Q ss_pred CCceecCCCCHHHHHHHHHHHHhcccC
Q 040816 19 DSVIPLLNVRGTILSMVIEYLKKHVEA 45 (128)
Q Consensus 19 ~~~Ipl~~v~~~~L~~Vi~~c~~h~~~ 45 (128)
.+.+++.++.-..-.+|++||+.|...
T Consensus 38 ~D~vd~~~~e~~~~Pkvie~Ckk~P~~ 64 (79)
T 2xuv_A 38 GDTVTLNETDLTQIPXVIEYCXXNPQX 64 (79)
T ss_dssp CSBCCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CCccchhhhhhhcccHHHHHHhcCCcc
Confidence 345666656555678999999998765
No 95
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=28.08 E-value=53 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHh--------hcCCCCCCCH
Q 040816 82 LLDLLCQTVADMIKGKSPEEIRQ--------TFHIQNDFTP 114 (128)
Q Consensus 82 L~~l~~~~ia~~i~gkt~eeir~--------~f~i~~d~t~ 114 (128)
++.-.+..+...+.|+||+||.. .+|+...+||
T Consensus 80 IvkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSp 120 (141)
T 3g0m_A 80 IVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTP 120 (141)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCc
Confidence 34444555666779999999964 3466666766
No 96
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.04 E-value=38 Score=19.48 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=17.3
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||..+.|+|..+.|..+.
T Consensus 33 ~~Ia~~l~~Rt~~qcr~Rw~ 52 (70)
T 2dim_A 33 SRIASLLHRKSAKQCKARWY 52 (70)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 67899999999999998753
No 97
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=27.78 E-value=56 Score=24.86 Aligned_cols=95 Identities=16% Similarity=0.273 Sum_probs=59.2
Q ss_pred CceecCCCCHHHHHHHHHHHHhcccCC---------------CCcccccchhh--hhhccChHHHHHHHHHhhhccHHHH
Q 040816 20 SVIPLLNVRGTILSMVIEYLKKHVEAK---------------TTEDDLKNWDV--DFAKLGQDTLFDLLMAANYLDIKSL 82 (128)
Q Consensus 20 ~~Ipl~~v~~~~L~~Vi~~c~~h~~~~---------------~~~~~~~~wd~--~Fl~~~~~~l~~li~AA~~L~i~~L 82 (128)
....++.-+--.-.-|+.|+.-+--.. ...++..+|-. .|-.......++.+.|..-.++.+|
T Consensus 189 ~~~Q~~~~~~~~T~NVvA~LYAAllng~~~~~~~~~Wl~~~~~s~e~fN~WA~~ngft~~~~~~~~~~Laa~TGVsVe~l 268 (309)
T 2q6f_A 189 EVAQRVPPDNLVTNNIVAWLYAAIISVKESSFSQPKWLESTTVSIEDYNRWASDNGFTPFSTSTAITKLSAITGVDVCKL 268 (309)
T ss_dssp SSCCCCCCCCBCHHHHHHHHHHHHHHC-------CTTSCSSCCCHHHHHHHHHHHTBCCCCCCHHHHHHHHHHTCCHHHH
T ss_pred hhhhccCcceeeehhHHHHHHHHHHcCcccccccccccccceecHHHHHHHHHhCCCcccchhhHHHHHHHHhCCcHHHH
Confidence 334444444444456777776543321 12233445533 3445666789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHH
Q 040816 83 LDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEE 118 (128)
Q Consensus 83 ~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~ 118 (128)
+...- .++.-..||+ |--...++++|||+|--
T Consensus 269 L~aI~-~L~~gf~G~~---IlG~~~leDE~Tp~~V~ 300 (309)
T 2q6f_A 269 LRTIM-VKSAQWGSDP---ILGQYNFEDELTPESVF 300 (309)
T ss_dssp HHHHH-HHHHCCCSCC---BTTBSSCCCSCCHHHHH
T ss_pred HHHHH-HHhcCCCCce---ecccccccccCCHHHHH
Confidence 87655 5565556665 44455688889998754
No 98
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=26.80 E-value=23 Score=24.85 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=10.4
Q ss_pred HHHHHHHhcccC
Q 040816 34 MVIEYLKKHVEA 45 (128)
Q Consensus 34 ~Vi~~c~~h~~~ 45 (128)
.|+.||+||+-.
T Consensus 36 LIl~ycr~~k~~ 47 (176)
T 3cuq_C 36 LVLSFCRLHKQS 47 (176)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCee
Confidence 499999999875
No 99
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=26.45 E-value=44 Score=18.47 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHHHHHhc--CCCHHHH-HhhcCCCCCC
Q 040816 87 CQTVADMIK--GKSPEEI-RQTFHIQNDF 112 (128)
Q Consensus 87 ~~~ia~~i~--gkt~eei-r~~f~i~~d~ 112 (128)
.++||.... |.|+.+| |++|+++..-
T Consensus 11 Y~YIas~t~~igEsaSdiLRRll~l~~~~ 39 (50)
T 1xrx_A 11 YSYIASHTKHIGESASDILRRMLKFSAAS 39 (50)
T ss_dssp HHHHHTTCSSTTCCHHHHHHHHHTC----
T ss_pred HHHHHHhchhhccCHHHHHHHHHcCCccc
Confidence 467777666 7888877 9999988653
No 100
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=26.41 E-value=44 Score=21.83 Aligned_cols=54 Identities=6% Similarity=0.024 Sum_probs=37.2
Q ss_pred CceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH-HHHHHHH
Q 040816 20 SVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL-LDLLCQT 89 (128)
Q Consensus 20 ~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L-~~l~~~~ 89 (128)
+.+=+ +=++..++.|+.|+..-+-. +++ ++ .+-.|...|.|.+|.+| ++.||..
T Consensus 53 g~~Fi-DRdp~~F~~ILnflR~G~l~------~p~------~~---~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 53 KEYFF-DRDPEVFRCVLNFYRTGKLH------YPR------YE---CISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp CSEEE-CSCHHHHHHHHHHHHHSCBC------CCT------TS---CHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred CcEEE-cCChHHHHHHHHHHhcCCCC------CCC------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 34444 56999999999999873321 111 01 25678899999999998 4787753
No 101
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=26.37 E-value=38 Score=27.25 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCHHHHHhhcCCCCCCCH-HHHHHHhhh
Q 040816 86 LCQTVADMIKGKSPEEIRQTFHIQNDFTP-EEEEEIRTE 123 (128)
Q Consensus 86 ~~~~ia~~i~gkt~eeir~~f~i~~d~t~-eee~~i~~e 123 (128)
+-+-|..++.-||||||-+.+|+..|-++ ++.++..-.
T Consensus 251 akagim~k~~hktpeeiyealgfn~de~qrq~~ak~~a~ 289 (505)
T 3few_X 251 AKAGIMDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAY 289 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTTTTTHHHHHHHHHHHHH
T ss_pred hhhhhHHhhccCCHHHHHHHhCCCccchHHHHHHHHHHH
Confidence 34556778999999999999999988743 344444333
No 102
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=26.15 E-value=37 Score=22.41 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHH------hhcCCCCCCCHHHHHHHhh
Q 040816 65 DTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIR------QTFHIQNDFTPEEEEEIRT 122 (128)
Q Consensus 65 ~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir------~~f~i~~d~t~eee~~i~~ 122 (128)
.....++.+..-++= ..+...|++.++|+..+.|+ ..||+-.|++..+...+-.
T Consensus 16 ~~AqkiLs~V~r~~~----rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lir 75 (134)
T 3aaf_A 16 PQAFKLLSAVDILGE----KFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSR 75 (134)
T ss_dssp HHHHHHHHHHHHTTT----CSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----cccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHH
Confidence 344455555554442 35567889999998766655 4789999999988876543
No 103
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=26.04 E-value=28 Score=19.92 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=13.8
Q ss_pred hcCCCHHHHHhhcCCCCC
Q 040816 94 IKGKSPEEIRQTFHIQND 111 (128)
Q Consensus 94 i~gkt~eeir~~f~i~~d 111 (128)
--|.|.+|||+++.+...
T Consensus 24 ~lGlsleEIrefL~l~~~ 41 (57)
T 1b0n_B 24 EANISPEEIRKYLLLNKK 41 (57)
T ss_dssp HTTCCHHHHHHHHHHC--
T ss_pred HcCCCHHHHHHHHHHhcc
Confidence 358999999999987643
No 104
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=25.61 E-value=41 Score=24.79 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
-..||..+.+||+.++|.+|.
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999998875
No 105
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=25.52 E-value=52 Score=20.20 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHH-hcccC
Q 040816 26 NVRGTILSMVIEYLK-KHVEA 45 (128)
Q Consensus 26 ~v~~~~L~~Vi~~c~-~h~~~ 45 (128)
.....+|.+|++||+ .|...
T Consensus 7 ~~~f~~lakiV~~mK~rh~~g 27 (81)
T 1d8j_A 7 GYKFGVLAKIVNYMKTRHQRG 27 (81)
T ss_dssp CTTHHHHHHHHHHHHHHHHHT
T ss_pred ccceehHHHHHHHHHHhhccC
Confidence 467789999999998 56654
No 106
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=25.52 E-value=62 Score=23.17 Aligned_cols=53 Identities=21% Similarity=0.374 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Q 040816 26 NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADM 93 (128)
Q Consensus 26 ~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~ 93 (128)
+-++..++.|+.|+..-+-. +++ ++.. ..+...|.|.+|.+|++.+-..+..+
T Consensus 61 DRDP~~F~~ILnyLRtG~L~------lP~------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 61 DRDPTYFGPVLNYLRHGKLV------INK------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp CSCSTTHHHHHHHHHHSCCC------CCT------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHhcCCccC------CCC------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 56888999999998873321 111 1111 35788999999999999999888654
No 107
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=25.28 E-value=72 Score=22.54 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=7.6
Q ss_pred hcCCCHHHHHhhcCC
Q 040816 94 IKGKSPEEIRQTFHI 108 (128)
Q Consensus 94 i~gkt~eeir~~f~i 108 (128)
..|+|-+||-+.+||
T Consensus 22 ~~g~tQ~eIA~~lGi 36 (192)
T 1zx4_A 22 NDGMSQKDIAAKEGL 36 (192)
T ss_dssp HTTCCHHHHHHHHTC
T ss_pred HcCCCHHHHHHHhCc
Confidence 345555555555554
No 108
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=25.10 E-value=42 Score=23.00 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
++.+|+.|+|++.++-..+|.
T Consensus 29 ~r~va~~IrG~~v~~A~~~L~ 49 (155)
T 1vq8_R 29 SKAIAREIKGKTAGEAVDYLE 49 (155)
T ss_dssp HHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 457889999999988877765
No 109
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.09 E-value=52 Score=17.61 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=14.5
Q ss_pred HhcCCCHHHHHhhcCCC
Q 040816 93 MIKGKSPEEIRQTFHIQ 109 (128)
Q Consensus 93 ~i~gkt~eeir~~f~i~ 109 (128)
...|+|..||-+.+|++
T Consensus 10 ~~~g~s~~eIA~~l~is 26 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHIS 26 (61)
T ss_dssp HHTSCCSHHHHHHTCSC
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 46799999999999985
No 110
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=24.99 E-value=19 Score=24.51 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=14.7
Q ss_pred cCCCHHHHHhhcCCCCCC
Q 040816 95 KGKSPEEIRQTFHIQNDF 112 (128)
Q Consensus 95 ~gkt~eeir~~f~i~~d~ 112 (128)
.|...+++++.|||+++.
T Consensus 157 ~~~~~~~v~~~l~lp~~~ 174 (204)
T 2b67_A 157 LGFDKSKVNEVLEIEDRF 174 (204)
T ss_dssp CCBCHHHHHHHHTCCTTE
T ss_pred cccCHHHHHHHhCCCCCC
Confidence 456789999999998764
No 111
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=24.42 E-value=1.2e+02 Score=21.11 Aligned_cols=45 Identities=4% Similarity=0.084 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhcccCC-CCcccccchhhhhhccChHHHHHHHHHhh
Q 040816 25 LNVRGTILSMVIEYLKKHVEAK-TTEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 25 ~~v~~~~L~~Vi~~c~~h~~~~-~~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
.+++...|+.|..|.++++.-. .....+..| .+.+...+++..|.
T Consensus 125 ~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw------~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 125 DDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGW------GDKVKAETLIKEGI 170 (173)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEE------ECHHHHHHHHHHHH
T ss_pred hHCCHHHHHHHHHHHHHHcCccCCCcEEEccC------cCHHHHHHHHHHHH
Confidence 3478899999999999998864 222233444 46677788887765
No 112
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.21 E-value=47 Score=18.83 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=15.8
Q ss_pred HHHHHHhcCCCHHHHHhhcC
Q 040816 88 QTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 88 ~~ia~~i~gkt~eeir~~f~ 107 (128)
..||. +-|+|..++|..+.
T Consensus 32 ~~Ia~-~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 32 RTIAP-IIGRTAAQCLEHYE 50 (66)
T ss_dssp HHHHH-HHSSCHHHHHHHHH
T ss_pred HHHhc-ccCcCHHHHHHHHH
Confidence 67888 67999999998764
No 113
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=23.81 E-value=1.2e+02 Score=21.13 Aligned_cols=45 Identities=7% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHhcccCC-CCcccccchhhhhhccChHHHHHHHHHhh
Q 040816 25 LNVRGTILSMVIEYLKKHVEAK-TTEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 25 ~~v~~~~L~~Vi~~c~~h~~~~-~~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
.+++...|+.|..|.++++.-. ........| .+.+...+++..|.
T Consensus 121 ~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw------~~~~~A~~~I~~~~ 166 (173)
T 1qez_A 121 NDLPQATKNKIVHFFEHYKELEPGKYVKISGW------GSATEAKNRIQLAI 166 (173)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEE------ECHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHhccccCCCceEEccc------cCHHHHHHHHHHHH
Confidence 3478899999999999998754 222223444 46677777777664
No 114
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=23.78 E-value=15 Score=25.26 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=14.6
Q ss_pred cCCCHHHHHhhcCCC-CCC
Q 040816 95 KGKSPEEIRQTFHIQ-NDF 112 (128)
Q Consensus 95 ~gkt~eeir~~f~i~-~d~ 112 (128)
.|-..+++++.|||+ +++
T Consensus 165 ~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 165 EGIDPELLSEIFADELKGY 183 (218)
T ss_dssp CCSCHHHHHHHTTTTTTTE
T ss_pred cccCHHHHHHHhCCCcccc
Confidence 456789999999998 664
No 115
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=23.46 E-value=35 Score=20.66 Aligned_cols=20 Identities=5% Similarity=0.137 Sum_probs=16.0
Q ss_pred HHHhcCCCHHHHHhhcCCCC
Q 040816 91 ADMIKGKSPEEIRQTFHIQN 110 (128)
Q Consensus 91 a~~i~gkt~eeir~~f~i~~ 110 (128)
+..-.|+|.++++..||-|.
T Consensus 11 ~~i~~GmTk~qV~~lLG~P~ 30 (88)
T 2yh9_A 11 SKIRVGMTQQQVAYALGTPL 30 (88)
T ss_dssp TTCCTTCBHHHHHHHHCSCS
T ss_pred HhccCCCCHHHHHHHcCCCc
Confidence 33445999999999999775
No 116
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=23.40 E-value=24 Score=24.17 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=24.3
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCC
Q 040816 67 LFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112 (128)
Q Consensus 67 l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~ 112 (128)
+..|+.||..||+-.. .+.|-..+++++.|||++++
T Consensus 118 ~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~~ 153 (200)
T 2fre_A 118 WFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDGF 153 (200)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCCc
Confidence 3455666666665432 24466889999999999764
No 117
>2jqt_A H-NS/STPA-binding protein 2; CNU, YDGT, replication origin associated, ORIC, protein binding; NMR {Escherichia coli}
Probab=23.28 E-value=97 Score=18.47 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=8.1
Q ss_pred HHHHHHHHhhh
Q 040816 66 TLFDLLMAANY 76 (128)
Q Consensus 66 ~l~~li~AA~~ 76 (128)
++..+..||++
T Consensus 35 e~~~f~~AaDH 45 (71)
T 2jqt_A 35 ELINMYRAADH 45 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777775
No 118
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=23.25 E-value=70 Score=21.63 Aligned_cols=47 Identities=17% Similarity=0.423 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCC--CHHHHHhhcCCCCCCCHHHHHHHhhhCC
Q 040816 79 IKSLLDLLCQTVADMIKGK--SPEEIRQTFHIQNDFTPEEEEEIRTETP 125 (128)
Q Consensus 79 i~~L~~l~~~~ia~~i~gk--t~eeir~~f~i~~d~t~eee~~i~~e~~ 125 (128)
++.|+..+-..-+..+.|. |++++|....-=.-++++-.+.+++.+|
T Consensus 88 v~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~ykaLS~~aK~dL~k~FP 136 (140)
T 2w9y_A 88 AKKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQSLSSEDQAALRKNNP 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHHTSCHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 5566666667778878885 8999998772222378888888888876
No 119
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=23.24 E-value=1.1e+02 Score=21.27 Aligned_cols=46 Identities=7% Similarity=0.123 Sum_probs=31.6
Q ss_pred cCCCCHHHHHHHHHHHHhcccCC---CCcccccchhhhhhccChHHHHHHHHHhh
Q 040816 24 LLNVRGTILSMVIEYLKKHVEAK---TTEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 24 l~~v~~~~L~~Vi~~c~~h~~~~---~~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
+.+++...|+.|..|.++++.-. .....+..| .+.+...+++..|.
T Consensus 121 i~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw------~~~~~A~~~I~~~~ 169 (174)
T 2prd_A 121 IGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGW------RDRKAALEEVRACI 169 (174)
T ss_dssp GGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEE------ECHHHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHHhcCccccCCCceEECcc------cCHHHHHHHHHHHH
Confidence 34578899999999999998754 222223344 46677777777664
No 120
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.07 E-value=50 Score=22.62 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
++.+|+.|+|++.++-..+|.
T Consensus 32 ~r~va~~IrG~~v~~A~~~L~ 52 (155)
T 3j21_S 32 AVEVCRELRGMMLNDALRYLD 52 (155)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHH
Confidence 457889999999988877765
No 121
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=23.06 E-value=41 Score=20.87 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhc--cChHHHHHH
Q 040816 25 LNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAK--LGQDTLFDL 70 (128)
Q Consensus 25 ~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~--~~~~~l~~l 70 (128)
.+|.+.+-..|+.||.+-...+ ..+..-.+|.. ++...|.+|
T Consensus 7 ~~v~~Wt~~~V~~W~~~~lg~~----d~d~~~~~f~~ndItG~vL~eL 50 (85)
T 1uqv_A 7 EDFSQWSVDDVITWCISTLEVE----ETDPLCQRLRENDIVGDLLPEL 50 (85)
T ss_dssp CCTTTCCHHHHHHHHHHHHSSC----TTSTHHHHHHHSCCCGGGHHHH
T ss_pred cccccCCHHHHHHHHHHHhCCC----CccHHHHHHHHcCCchhhHHHc
Confidence 3688888999999997754432 12234456764 777777655
No 122
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=22.12 E-value=17 Score=25.35 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=14.5
Q ss_pred cCCCHHHHHhhcCCCCCC
Q 040816 95 KGKSPEEIRQTFHIQNDF 112 (128)
Q Consensus 95 ~gkt~eeir~~f~i~~d~ 112 (128)
.|-..+++++.|||++++
T Consensus 169 ~~~~~~~v~~~L~lp~~~ 186 (218)
T 3bem_A 169 IGFDAEAVKRILNIDDQF 186 (218)
T ss_dssp CCSCHHHHHHHHTCCTTE
T ss_pred cCcCHHHHHHHhCCCCCc
Confidence 345789999999999764
No 123
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=21.90 E-value=2.2e+02 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcccCC
Q 040816 30 TILSMVIEYLKKHVEAK 46 (128)
Q Consensus 30 ~~L~~Vi~~c~~h~~~~ 46 (128)
..+.++++|++.|...+
T Consensus 3 ~~~~~~~~~i~~~~~~~ 19 (292)
T 1d5y_A 3 GIIRDLLIWLEGHLDQP 19 (292)
T ss_dssp HHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 56788899998887543
No 124
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=21.65 E-value=53 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCCHHHHHhhcC
Q 040816 87 CQTVADMIKGKSPEEIRQTFH 107 (128)
Q Consensus 87 ~~~ia~~i~gkt~eeir~~f~ 107 (128)
++.+|+.|+|++.++-..+|.
T Consensus 31 ~reva~~IRG~~v~~A~~~L~ 51 (183)
T 4a17_Q 31 TYEVVRAIKGLNLENAKRYLK 51 (183)
T ss_dssp HHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 467899999999998888775
No 125
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=21.64 E-value=31 Score=23.76 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=23.0
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCC
Q 040816 68 FDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112 (128)
Q Consensus 68 ~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~ 112 (128)
-.|+.||..|++-.. .+.|-..+++++.|||+++.
T Consensus 120 ~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~~ 154 (191)
T 3h4o_A 120 DHMMLQATELGLASV----------WVCYFNPDIIREEFSLPDNL 154 (191)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCCc
Confidence 355555555555433 23456789999999998764
No 126
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=21.59 E-value=23 Score=23.90 Aligned_cols=15 Identities=20% Similarity=0.590 Sum_probs=12.4
Q ss_pred CHHHHHhhcCCCCCC
Q 040816 98 SPEEIRQTFHIQNDF 112 (128)
Q Consensus 98 t~eeir~~f~i~~d~ 112 (128)
..+++++.|||++++
T Consensus 156 ~~~~~~~~l~lp~~~ 170 (200)
T 1ywq_A 156 VDAEVKETWNIPAEW 170 (200)
T ss_dssp THHHHHHHTTCCTTE
T ss_pred cHHHHHHHhCCCCCc
Confidence 458999999998764
No 127
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59 E-value=87 Score=19.25 Aligned_cols=46 Identities=4% Similarity=-0.010 Sum_probs=34.8
Q ss_pred cChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhc---------CCCHHHHHhhcC
Q 040816 62 LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIK---------GKSPEEIRQTFH 107 (128)
Q Consensus 62 ~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~---------gkt~eeir~~f~ 107 (128)
++.+.-+++...|...+.+.|.+.|-++|..... .-+.+++..++.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 6777888999999999999999999988875432 235555555554
No 128
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=21.56 E-value=1.4e+02 Score=20.77 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHhcccCC-CCcccccchhhhhhccChHHHHHHHHHhh
Q 040816 25 LNVRGTILSMVIEYLKKHVEAK-TTEDDLKNWDVDFAKLGQDTLFDLLMAAN 75 (128)
Q Consensus 25 ~~v~~~~L~~Vi~~c~~h~~~~-~~~~~~~~wd~~Fl~~~~~~l~~li~AA~ 75 (128)
.+++...|+.|..|.++++.-. ........| .+.+...+++..|.
T Consensus 119 ~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw------~~~~~A~~~I~~~~ 164 (172)
T 1sxv_A 119 GDVPAFELDAIKHFFVHYKDLEPGKFVKAADW------VDRAEAEAEVQRSV 164 (172)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEE------ECHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCC------CCHHHHHHHHHHHH
Confidence 3478889999999999998854 222223444 46777777777664
No 129
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=20.88 E-value=1.4e+02 Score=18.91 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=26.6
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHh
Q 040816 67 LFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQ 104 (128)
Q Consensus 67 l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~ 104 (128)
...|-=+|.|++.++|..+|...=...-.|.+.+++..
T Consensus 56 aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~ 93 (119)
T 3myf_A 56 IHKLHGASCYCGVPTTQRLCQEIESALKRQTPVEDLEP 93 (119)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 45555689999999999988765555445666555443
No 130
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.86 E-value=68 Score=18.73 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=10.2
Q ss_pred hcCCCHHHHHhhcCCC
Q 040816 94 IKGKSPEEIRQTFHIQ 109 (128)
Q Consensus 94 i~gkt~eeir~~f~i~ 109 (128)
..|+|.+||-+.+||+
T Consensus 34 ~~g~s~~eIA~~l~is 49 (82)
T 1je8_A 34 AQGLPNKMIARRLDIT 49 (82)
T ss_dssp TTTCCHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 3566666666666664
No 131
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=20.81 E-value=33 Score=19.04 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=12.9
Q ss_pred HHHhcCCCHHHHHhhcCCCCC
Q 040816 91 ADMIKGKSPEEIRQTFHIQND 111 (128)
Q Consensus 91 a~~i~gkt~eeir~~f~i~~d 111 (128)
+.=.+|.|.+||++.++++.+
T Consensus 31 ~~GA~g~T~~ql~~~L~~~~~ 51 (55)
T 1m93_A 31 YYGANGSTAEQLSKYVEKEAD 51 (55)
T ss_dssp HHHCCHHHHHHHHTTC-----
T ss_pred HhhccchHHHHHHHHhCCCcc
Confidence 344568899999999998754
No 132
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=20.55 E-value=46 Score=24.28 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHhhcCCC-CCCCHHHHHHH
Q 040816 80 KSLLDLLCQTVADMIKGKSPEEIRQTFHIQ-NDFTPEEEEEI 120 (128)
Q Consensus 80 ~~L~~l~~~~ia~~i~gkt~eeir~~f~i~-~d~t~eee~~i 120 (128)
-.|+..+|-.||.++....|-.++.+-.+. +.||.+|..+.
T Consensus 91 lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~m 132 (252)
T 1f5q_B 91 YQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTL 132 (252)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 468888999999999886433344333333 34888765543
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.12 E-value=86 Score=17.25 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.0
Q ss_pred HhcCCCHHHHHhhcCCC
Q 040816 93 MIKGKSPEEIRQTFHIQ 109 (128)
Q Consensus 93 ~i~gkt~eeir~~f~i~ 109 (128)
...|+|..||-+.+|++
T Consensus 23 ~~~g~s~~eIA~~l~is 39 (74)
T 1fse_A 23 LVQDKTTKEIASELFIS 39 (74)
T ss_dssp HTTTCCHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCCC
Confidence 35688888888888875
Done!