Query 040821
Match_columns 220
No_of_seqs 178 out of 1338
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:08:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0071 IbpA Molecular chapero 99.9 1.5E-24 3.3E-29 176.3 14.3 104 91-198 39-145 (146)
2 PRK10743 heat shock protein Ib 99.9 1.4E-24 3.1E-29 176.1 12.7 100 92-199 34-137 (137)
3 PRK11597 heat shock chaperone 99.9 1.9E-24 4E-29 176.4 12.4 102 91-200 31-136 (142)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 6.2E-24 1.4E-28 160.0 11.1 89 94-185 1-92 (92)
5 cd06471 ACD_LpsHSP_like Group 99.9 5.5E-22 1.2E-26 149.2 10.9 88 93-185 1-93 (93)
6 PF00011 HSP20: Hsp20/alpha cr 99.9 1.6E-21 3.4E-26 148.0 13.1 98 96-199 1-102 (102)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.7E-21 1E-25 144.3 11.6 86 93-185 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 3.8E-21 8.3E-26 144.3 10.9 82 96-185 4-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.8 5.1E-21 1.1E-25 142.5 9.5 79 96-185 2-81 (81)
10 cd06481 ACD_HspB9_like Alpha c 99.8 8.1E-21 1.7E-25 142.8 10.0 83 99-185 4-87 (87)
11 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.2E-20 2.7E-25 140.4 10.8 82 96-185 1-83 (83)
12 cd06498 ACD_alphaB-crystallin_ 99.8 1.3E-20 2.9E-25 140.8 10.7 83 97-186 2-84 (84)
13 cd06475 ACD_HspB1_like Alpha c 99.8 2.6E-20 5.7E-25 139.7 10.9 83 95-184 3-85 (86)
14 cd06476 ACD_HspB2_like Alpha c 99.8 4.2E-20 9.1E-25 138.0 10.4 82 97-185 2-83 (83)
15 cd06482 ACD_HspB10 Alpha cryst 99.8 1.5E-19 3.1E-24 136.4 10.3 81 100-184 6-86 (87)
16 cd06477 ACD_HspB3_Like Alpha c 99.8 4.4E-19 9.6E-24 132.7 10.3 79 98-184 3-82 (83)
17 cd06526 metazoan_ACD Alpha-cry 99.8 3.8E-19 8.3E-24 131.6 8.9 77 101-185 6-83 (83)
18 cd06464 ACD_sHsps-like Alpha-c 99.8 2.2E-18 4.8E-23 125.6 10.7 86 96-185 1-88 (88)
19 KOG3591 Alpha crystallins [Pos 99.8 2.3E-18 4.9E-23 144.8 12.1 108 93-207 63-170 (173)
20 KOG0710 Molecular chaperone (s 99.7 6.7E-18 1.4E-22 144.2 7.7 107 90-199 82-195 (196)
21 cd06480 ACD_HspB8_like Alpha-c 99.7 9.1E-17 2E-21 122.2 9.6 82 97-185 10-91 (91)
22 cd00298 ACD_sHsps_p23-like Thi 99.4 1.2E-12 2.5E-17 91.5 9.7 80 97-185 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.2 1.8E-10 3.8E-15 83.2 9.3 71 97-188 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 98.8 4.4E-08 9.5E-13 82.8 11.5 80 90-189 89-171 (177)
25 cd06463 p23_like Proteins cont 98.8 3.9E-08 8.4E-13 70.3 8.7 76 97-188 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.4 8.5E-07 1.8E-11 64.5 7.3 77 96-188 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.1 0.00012 2.6E-09 51.7 11.5 77 93-185 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 97.7 0.00072 1.6E-08 52.0 10.9 78 93-187 1-78 (108)
29 PF08190 PIH1: pre-RNA process 97.6 0.0004 8.6E-09 62.4 9.2 66 101-184 260-327 (328)
30 cd06467 p23_NUDC_like p23_like 97.4 0.0017 3.8E-08 47.1 9.1 75 96-188 2-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 97.4 0.0015 3.3E-08 47.8 8.7 77 96-188 1-77 (84)
32 cd06494 p23_NUDCD2_like p23-li 97.0 0.012 2.5E-07 44.9 10.3 78 92-188 5-83 (93)
33 cd06468 p23_CacyBP p23_like do 97.0 0.013 2.9E-07 43.3 10.2 79 94-188 3-85 (92)
34 cd06488 p23_melusin_like p23_l 97.0 0.012 2.7E-07 43.6 9.9 80 94-189 2-81 (87)
35 cd06493 p23_NUDCD1_like p23_NU 96.9 0.014 3.1E-07 43.0 10.0 76 95-188 1-77 (85)
36 cd00237 p23 p23 binds heat sho 96.3 0.083 1.8E-06 41.1 10.9 79 93-189 2-80 (106)
37 PLN03088 SGT1, suppressor of 94.8 0.21 4.6E-06 46.0 9.4 81 92-188 156-236 (356)
38 cd06492 p23_mNUDC_like p23-lik 94.1 0.54 1.2E-05 35.1 8.6 75 96-188 2-79 (87)
39 KOG1309 Suppressor of G2 allel 94.0 0.21 4.6E-06 42.8 7.0 80 92-187 3-82 (196)
40 cd06495 p23_NUDCD3_like p23-li 93.8 1.4 3E-05 34.1 10.6 81 92-187 4-86 (102)
41 cd06490 p23_NCB5OR p23_like do 91.0 5.1 0.00011 29.7 10.3 78 95-189 1-81 (87)
42 PF14913 DPCD: DPCD protein fa 81.0 16 0.00035 31.6 9.1 77 91-186 85-169 (194)
43 cd06482 ACD_HspB10 Alpha cryst 75.7 5.5 0.00012 29.8 4.3 33 153-187 9-41 (87)
44 PF00525 Crystallin: Alpha cry 73.8 1.8 3.9E-05 30.6 1.2 20 33-52 8-29 (59)
45 cd06472 ACD_ScHsp26_like Alpha 72.5 5.9 0.00013 29.2 3.8 31 101-132 59-89 (92)
46 PF00011 HSP20: Hsp20/alpha cr 69.7 9.3 0.0002 28.2 4.4 38 100-139 53-90 (102)
47 cd06477 ACD_HspB3_Like Alpha c 68.7 11 0.00023 28.0 4.4 30 103-134 51-81 (83)
48 cd06464 ACD_sHsps-like Alpha-c 67.7 11 0.00023 26.5 4.2 34 98-132 52-85 (88)
49 cd06478 ACD_HspB4-5-6 Alpha-cr 67.0 13 0.00027 27.3 4.5 32 153-186 8-39 (83)
50 cd06470 ACD_IbpA-B_like Alpha- 66.1 13 0.00027 27.5 4.4 35 153-189 12-46 (90)
51 cd06479 ACD_HspB7_like Alpha c 64.8 14 0.00031 27.1 4.5 33 153-187 9-41 (81)
52 PRK10743 heat shock protein Ib 64.6 14 0.00031 29.8 4.8 30 156-187 49-78 (137)
53 PF13349 DUF4097: Domain of un 64.4 56 0.0012 25.8 8.3 80 93-182 66-147 (166)
54 cd06526 metazoan_ACD Alpha-cry 63.6 11 0.00025 27.2 3.7 30 102-132 50-80 (83)
55 cd06481 ACD_HspB9_like Alpha c 62.0 16 0.00034 27.1 4.3 32 100-132 52-84 (87)
56 COG0071 IbpA Molecular chapero 60.4 24 0.00053 28.3 5.5 30 102-132 100-129 (146)
57 cd06471 ACD_LpsHSP_like Group 60.3 14 0.0003 27.1 3.7 30 101-132 61-90 (93)
58 KOG3158 HSP90 co-chaperone p23 56.8 58 0.0013 27.9 7.2 79 90-186 5-83 (180)
59 cd06480 ACD_HspB8_like Alpha-c 56.0 25 0.00054 26.6 4.5 31 102-134 58-89 (91)
60 cd06497 ACD_alphaA-crystallin_ 55.5 18 0.00039 26.7 3.6 28 104-132 55-83 (86)
61 cd06469 p23_DYX1C1_like p23_li 54.5 27 0.00058 24.3 4.3 30 102-132 36-65 (78)
62 cd06498 ACD_alphaB-crystallin_ 54.3 19 0.00041 26.5 3.5 29 103-132 51-80 (84)
63 PRK11597 heat shock chaperone 52.0 30 0.00066 28.3 4.7 31 155-187 46-76 (142)
64 cd00298 ACD_sHsps_p23-like Thi 50.4 34 0.00073 22.6 4.1 32 100-132 46-77 (80)
65 PF12992 DUF3876: Domain of un 48.9 1.2E+02 0.0026 23.2 7.5 41 91-132 24-68 (95)
66 cd06476 ACD_HspB2_like Alpha c 48.8 36 0.00079 25.0 4.3 29 103-132 51-80 (83)
67 KOG2265 Nuclear distribution p 45.8 1.3E+02 0.0029 25.7 7.7 79 92-188 18-97 (179)
68 cd06475 ACD_HspB1_like Alpha c 44.2 32 0.00068 25.4 3.4 29 103-132 54-83 (86)
69 TIGR02856 spore_yqfC sporulati 39.2 46 0.001 24.8 3.6 18 114-132 41-58 (85)
70 PRK14290 chaperone protein Dna 38.2 1.6E+02 0.0034 27.4 7.8 29 157-186 277-305 (365)
71 COG5091 SGT1 Suppressor of G2 37.9 23 0.0005 32.8 2.1 84 90-188 174-257 (368)
72 cd06467 p23_NUDC_like p23_like 35.3 68 0.0015 22.6 3.9 30 154-184 10-39 (85)
73 KOG3413 Mitochondrial matrix p 32.3 22 0.00048 29.7 1.0 23 162-185 67-89 (156)
74 PF04972 BON: BON domain; Int 32.0 78 0.0017 21.2 3.6 23 113-137 13-35 (64)
75 PF00347 Ribosomal_L6: Ribosom 31.9 1.5E+02 0.0032 20.6 5.2 47 116-185 2-48 (77)
76 PF08308 PEGA: PEGA domain; I 30.8 1.2E+02 0.0027 20.7 4.6 33 99-132 32-64 (71)
77 PRK05518 rpl6p 50S ribosomal p 28.5 2.8E+02 0.0062 23.5 7.2 45 116-184 13-57 (180)
78 KOG3591 Alpha crystallins [Pos 26.6 1.1E+02 0.0023 25.9 4.2 32 106-138 119-150 (173)
79 TIGR03654 L6_bact ribosomal pr 26.2 3.1E+02 0.0066 22.9 6.9 44 116-184 11-54 (175)
80 PF01954 DUF104: Protein of un 25.1 58 0.0013 22.8 2.0 32 167-200 3-34 (60)
81 cd00503 Frataxin Frataxin is a 24.8 72 0.0016 24.7 2.6 18 167-185 28-45 (105)
82 cd06494 p23_NUDCD2_like p23-li 24.1 1.3E+02 0.0027 22.7 3.8 30 153-183 16-45 (93)
83 PRK02913 hypothetical protein; 23.5 70 0.0015 26.7 2.4 52 151-212 95-147 (150)
84 PRK00446 cyaY frataxin-like pr 23.1 74 0.0016 24.7 2.4 16 169-185 29-44 (105)
85 PF01491 Frataxin_Cyay: Fratax 22.9 86 0.0019 24.3 2.7 18 167-185 30-47 (109)
86 TIGR03653 arch_L6P archaeal ri 22.7 4.6E+02 0.0099 21.9 7.4 45 116-184 7-51 (170)
87 TIGR03421 FeS_CyaY iron donor 22.3 76 0.0016 24.5 2.3 17 168-185 26-42 (102)
88 PF13349 DUF4097: Domain of un 21.6 2.2E+02 0.0047 22.3 5.0 15 95-109 87-101 (166)
89 PRK05498 rplF 50S ribosomal pr 20.5 4.4E+02 0.0095 22.0 6.8 44 116-184 12-55 (178)
90 PTZ00027 60S ribosomal protein 20.1 4.7E+02 0.01 22.3 6.9 47 116-184 13-59 (190)
No 1
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.5e-24 Score=176.34 Aligned_cols=104 Identities=31% Similarity=0.481 Sum_probs=90.1
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccC
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPN 167 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e 167 (220)
..|++||+|++++|+|.++|| ||+++||+|.++++ .|+|+ |++..+.+.+...+++. +|.|.|+|+||+.|+++
T Consensus 39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~~~~-~l~I~-g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~ 115 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITVEGN-TLTIR-GEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPE 115 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEEECC-EEEEE-EEecccccccCCceEEEEEEeeeEEEEEECccccccc
Confidence 689999999999999999999 99999999999999 69999 98875444344444433 99999999999999999
Q ss_pred ceEEEeccCCEEEEEEeccCCCCCCeeEEec
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAK 198 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I 198 (220)
.|+|+|+ ||||+|+|||.++++.+.+.|+|
T Consensus 116 ~~~A~~~-nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 116 VIKAKYK-NGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred ceeeEee-CcEEEEEEeccccccccCceeec
Confidence 9999999 99999999999987555555555
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.92 E-value=1.4e-24 Score=176.06 Aligned_cols=100 Identities=15% Similarity=0.261 Sum_probs=83.8
Q ss_pred CceeeEEE-eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccC
Q 040821 92 KVSVQWKS-KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPN 167 (220)
Q Consensus 92 ~p~vDi~E-~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e 167 (220)
.|++||++ ++++|.|.++|| |++++||+|++++| +|+|+ |+++.+. ++..|++. +|+|+|+|.||++||.+
T Consensus 34 ~p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v~~~-~LtI~-ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~ 108 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVA-GFAESELEITAQDN-LLVVK-GAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR 108 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC
Confidence 38899994 899999999999 99999999999999 79999 9865432 33445543 89999999999999999
Q ss_pred ceEEEeccCCEEEEEEeccCCCCCCeeEEecc
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~ 199 (220)
+ |+|+ ||||+|++||.++++.+.++|+|+
T Consensus 109 ~--A~~~-dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 109 G--ANLV-NGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred c--CEEe-CCEEEEEEeCCCccccCCeEEeeC
Confidence 4 9999 999999999975555555666663
No 3
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.92 E-value=1.9e-24 Score=176.45 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=85.0
Q ss_pred CCceeeEEE-eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821 91 EKVSVQWKS-KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP 166 (220)
Q Consensus 91 ~~p~vDi~E-~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~ 166 (220)
..|++||+| +++.|.|.++|| |++++||+|++++| +|+|+ |+++.+ +++.+|++. +|+|+|+|.||++||.
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v~~~-~LtI~-ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~ 105 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALA-GFRQEDLDIQLEGT-RLTVK-GTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEV 105 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEEECC-EEEEE-EEEccc--cCCCcEEEEEEeCcEEEEEEECCCCccc
Confidence 458999998 578999999999 99999999999999 79999 986542 234456654 8999999999999999
Q ss_pred CceEEEeccCCEEEEEEeccCCCCCCeeEEeccC
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS 200 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~ 200 (220)
+ +|+|+ ||||+|+|||..++..+.++|+|+.
T Consensus 106 ~--~A~~~-nGVL~I~lPK~~~~~~~~rkI~I~~ 136 (142)
T PRK11597 106 S--GATFV-NGLLHIDLIRNEPEAIAPQRIAISE 136 (142)
T ss_pred C--cCEEc-CCEEEEEEeccCccccCCcEEEECC
Confidence 8 69999 9999999999854444556666654
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.91 E-value=6.2e-24 Score=159.96 Aligned_cols=89 Identities=36% Similarity=0.557 Sum_probs=78.7
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCceE
Q 040821 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~I~ 170 (220)
++||+|++++|.|.++|| |++++||+|+++++++|+|+ |+++.+...+...+++. +|+|.|+|.||++++.++|+
T Consensus 1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~-g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~ 78 (92)
T cd06472 1 RVDWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRIS-GERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVK 78 (92)
T ss_pred CccEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEE-EEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCE
Confidence 479999999999999999 99999999999975579999 98765544444555544 89999999999999999999
Q ss_pred EEeccCCEEEEEEec
Q 040821 171 TAMDDAGVLTVTFTK 185 (220)
Q Consensus 171 A~~~~dGVLtItlPK 185 (220)
|+|+ ||||+|++||
T Consensus 79 A~~~-nGvL~I~lPK 92 (92)
T cd06472 79 AFLE-NGVLTVTVPK 92 (92)
T ss_pred EEEE-CCEEEEEecC
Confidence 9999 9999999998
No 5
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.87 E-value=5.5e-22 Score=149.15 Aligned_cols=88 Identities=26% Similarity=0.416 Sum_probs=76.3
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCC--CeEEEE---EeEEEEEEECCCCcccC
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDT--STLMCV---DGKNFRSFILPDGVNPN 167 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~--~~~~r~---~g~F~R~~~LPe~Vd~e 167 (220)
|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |+++...++.. ..+++. +|.|+|+|.|| +++.+
T Consensus 1 ~~~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~-~L~I~-g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~ 76 (93)
T cd06471 1 MKTDIKETDDEYIVEADLP-GFKKEDIKLDYKDG-YLTIS-AKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEE 76 (93)
T ss_pred CceeEEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHH
Confidence 4689999999999999999 99999999999998 69999 98765332222 245543 89999999999 79999
Q ss_pred ceEEEeccCCEEEEEEec
Q 040821 168 GFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK 185 (220)
+|+|+|+ ||+|+|++||
T Consensus 77 ~i~A~~~-dGvL~I~lPK 93 (93)
T cd06471 77 EIKAKYE-NGVLKITLPK 93 (93)
T ss_pred HCEEEEE-CCEEEEEEcC
Confidence 9999999 9999999998
No 6
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.87 E-value=1.6e-21 Score=148.05 Aligned_cols=98 Identities=29% Similarity=0.449 Sum_probs=77.4
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCceEEE
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNGFKTA 172 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~I~A~ 172 (220)
||+|+++.|.|.++|| ||.+++|+|+++++ .|+|+ |++. ... .+..++.. ++.|.|+|.||+++|.++|+|+
T Consensus 1 di~e~~~~~~i~~~lp-G~~~edi~I~~~~~-~L~I~-g~~~-~~~-~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~ 75 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLP-GFDKEDIKIKVDDN-KLVIS-GKRK-EEE-EDDRYYRSERRYGSFERSIRLPEDVDPDKIKAS 75 (102)
T ss_dssp EEEESSSEEEEEEE-T-TS-GGGEEEEEETT-EEEEE-EEEE-GEE-CTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEE
T ss_pred CeEECCCEEEEEEECC-CCChHHEEEEEecC-cccee-ceee-eee-eeeeeeecccccceEEEEEcCCCcCCcceEEEE
Confidence 7999999999999999 99999999999999 69999 9776 222 23334333 8999999999999999999999
Q ss_pred eccCCEEEEEEeccCCCCC-CeeEEecc
Q 040821 173 MDDAGVLTVTFTKLKPEKK-KLRPIAKK 199 (220)
Q Consensus 173 ~~~dGVLtItlPK~e~~k~-r~i~I~I~ 199 (220)
|+ ||+|+|++||.+..++ ..+.|+|+
T Consensus 76 ~~-~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 76 YE-NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp ET-TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred ec-CCEEEEEEEccccccCCCCeEEEeC
Confidence 99 9999999999987753 56666663
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.86 E-value=4.7e-21 Score=144.26 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=75.3
Q ss_pred ceeeEEEeC-CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCc
Q 040821 93 VSVQWKSKK-GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNG 168 (220)
Q Consensus 93 p~vDi~E~~-d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~ 168 (220)
|++||+|++ +.|+|.++|| |++++||+|.++++ .|+|+ |+++.+.+ .+.+|++. +|+|.|+|.||+++|.+
T Consensus 1 p~~di~e~~~~~~~v~~~lP-G~~kedi~v~~~~~-~L~I~-g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~- 75 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVA-GFSEDDLEIEVENN-QLTVT-GKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK- 75 (90)
T ss_pred CCeeeEEcCCCeEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC-
Confidence 679999975 9999999999 99999999999998 79999 98876544 34455544 99999999999999985
Q ss_pred eEEEeccCCEEEEEEec
Q 040821 169 FKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK 185 (220)
+|+|+ ||+|+|++|+
T Consensus 76 -~A~~~-~GvL~I~l~~ 90 (90)
T cd06470 76 -GAELE-NGLLTIDLER 90 (90)
T ss_pred -eeEEe-CCEEEEEEEC
Confidence 89999 9999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.86 E-value=3.8e-21 Score=144.25 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=71.6
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-c
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-D 174 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~ 174 (220)
+|+++++.|.|.++|| ||+++||+|++.++ .|+|+ |++..+ . .+..|++ +.|+|+|.||++||.++|+|+| +
T Consensus 4 ~v~e~~~~~~v~~dlp-G~~~edi~V~v~~~-~L~I~-g~~~~~-~-~~~~~~~--~ef~R~~~LP~~Vd~~~i~A~~~~ 76 (86)
T cd06497 4 EVRSDRDKFTIYLDVK-HFSPEDLTVKVLDD-YVEIH-GKHSER-Q-DDHGYIS--REFHRRYRLPSNVDQSAITCSLSA 76 (86)
T ss_pred eEEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEcce-e-CCCCEEE--EEEEEEEECCCCCChHHeEEEeCC
Confidence 7999999999999999 99999999999999 79999 975432 2 2233443 4799999999999999999999 7
Q ss_pred cCCEEEEEEec
Q 040821 175 DAGVLTVTFTK 185 (220)
Q Consensus 175 ~dGVLtItlPK 185 (220)
||||+|++||
T Consensus 77 -dGvL~I~~PK 86 (86)
T cd06497 77 -DGMLTFSGPK 86 (86)
T ss_pred -CCEEEEEecC
Confidence 9999999998
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.85 E-value=5.1e-21 Score=142.52 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=71.0
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-c
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-D 174 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~ 174 (220)
||.|++++|.|.+||| ||+|+||+|+++++ .|+|+ |+++.+. . ..+|+|.|+|.||++||+++|+|+| +
T Consensus 2 ~v~e~~~~~~v~~dlp-G~~pedi~V~v~~~-~L~I~-ger~~~~---~----~~~g~F~R~~~LP~~vd~e~v~A~l~~ 71 (81)
T cd06479 2 NVKTLGDTYQFAVDVS-DFSPEDIIVTTSNN-QIEVH-AEKLASD---G----TVMNTFTHKCQLPEDVDPTSVSSSLGE 71 (81)
T ss_pred CccCcCCeEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEeccC---C----CEEEEEEEEEECCCCcCHHHeEEEecC
Confidence 6899999999999999 99999999999999 79999 9875332 1 1378999999999999999999998 8
Q ss_pred cCCEEEEEEec
Q 040821 175 DAGVLTVTFTK 185 (220)
Q Consensus 175 ~dGVLtItlPK 185 (220)
||+|+|++++
T Consensus 72 -~GvL~I~~~~ 81 (81)
T cd06479 72 -DGTLTIKARR 81 (81)
T ss_pred -CCEEEEEecC
Confidence 9999999986
No 10
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.84 E-value=8.1e-21 Score=142.78 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=73.0
Q ss_pred EeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-ccCC
Q 040821 99 SKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-DDAG 177 (220)
Q Consensus 99 E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~~dG 177 (220)
+.++.|.|.++|| ||+++||+|+++++ .|+|+ |++..+.+.....|.+.+|+|.|+|.||++||.++|+|+| + ||
T Consensus 4 ~~~d~~~v~~dlp-G~~~edI~V~v~~~-~L~I~-g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~-dG 79 (87)
T cd06481 4 DGKEGFSLKLDVR-GFSPEDLSVRVDGR-KLVVT-GKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSP-SG 79 (87)
T ss_pred CccceEEEEEECC-CCChHHeEEEEECC-EEEEE-EEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCC-Cc
Confidence 5678999999999 99999999999998 69999 9865544433445666699999999999999999999999 8 99
Q ss_pred EEEEEEec
Q 040821 178 VLTVTFTK 185 (220)
Q Consensus 178 VLtItlPK 185 (220)
||+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999996
No 11
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.84 E-value=1.2e-20 Score=140.45 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=70.6
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-c
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-D 174 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~ 174 (220)
.+.+++++|.|.+||| ||+++||+|++.++ .|+|+ |++..+. ....+++ +.|.|+|.||.+||.++|+|+| +
T Consensus 1 ~~~~~~~~~~v~~dlp-G~~~edI~V~v~~~-~L~I~-g~~~~~~--~~~~~~~--~ef~R~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06478 1 EVRLDKDRFSVNLDVK-HFSPEELSVKVLGD-FVEIH-GKHEERQ--DEHGFIS--REFHRRYRLPPGVDPAAITSSLSA 73 (83)
T ss_pred CeeecCceEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEceEc--CCCCEEE--EEEEEEEECCCCcChHHeEEEECC
Confidence 3788999999999999 99999999999999 69999 9754322 2233443 4799999999999999999999 6
Q ss_pred cCCEEEEEEec
Q 040821 175 DAGVLTVTFTK 185 (220)
Q Consensus 175 ~dGVLtItlPK 185 (220)
||||+|++||
T Consensus 74 -dGvL~I~~PK 83 (83)
T cd06478 74 -DGVLTISGPR 83 (83)
T ss_pred -CCEEEEEecC
Confidence 9999999998
No 12
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.84 E-value=1.3e-20 Score=140.80 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=71.0
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
+++++++|.|.++|| ||+|+||+|++.++ .|+|+ |++..+. +...++ +++|+|+|.||++||.++|+|+|++|
T Consensus 2 ~~~~~~~~~v~~dlp-G~~~edi~V~v~~~-~L~I~-g~~~~~~--~~~~~~--~~eF~R~~~LP~~vd~~~i~A~~~~d 74 (84)
T cd06498 2 MRLEKDKFSVNLDVK-HFSPEELKVKVLGD-FIEIH-GKHEERQ--DEHGFI--SREFQRKYRIPADVDPLTITSSLSPD 74 (84)
T ss_pred eEeCCceEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEccee--CCCCEE--EEEEEEEEECCCCCChHHcEEEeCCC
Confidence 578899999999999 99999999999999 69999 9754322 233444 46899999999999999999999339
Q ss_pred CEEEEEEecc
Q 040821 177 GVLTVTFTKL 186 (220)
Q Consensus 177 GVLtItlPK~ 186 (220)
|||+|++||+
T Consensus 75 GvL~I~lPk~ 84 (84)
T cd06498 75 GVLTVCGPRK 84 (84)
T ss_pred CEEEEEEeCC
Confidence 9999999995
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=2.6e-20 Score=139.73 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=71.8
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEec
Q 040821 95 VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMD 174 (220)
Q Consensus 95 vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~ 174 (220)
.||+|+++.|.|.++|| ||+|++|+|.+.++ .|+|+ |+++.+. + ...+ ..++|+|+|.||++||.++|+|+|.
T Consensus 3 ~~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~-~-~~~~--~~~~f~R~f~LP~~vd~~~v~A~~~ 75 (86)
T cd06475 3 SEIRQTADRWKVSLDVN-HFAPEELVVKTKDG-VVEIT-GKHEEKQ-D-EHGF--VSRCFTRKYTLPPGVDPTAVTSSLS 75 (86)
T ss_pred ceEEEcCCeEEEEEECC-CCCHHHEEEEEECC-EEEEE-EEECcCc-C-CCCE--EEEEEEEEEECCCCCCHHHcEEEEC
Confidence 58999999999999999 99999999999999 69999 9764322 1 2222 3569999999999999999999994
Q ss_pred cCCEEEEEEe
Q 040821 175 DAGVLTVTFT 184 (220)
Q Consensus 175 ~dGVLtItlP 184 (220)
+||+|+|++|
T Consensus 76 ~dGvL~I~lP 85 (86)
T cd06475 76 PDGILTVEAP 85 (86)
T ss_pred CCCeEEEEec
Confidence 4999999998
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.83 E-value=4.2e-20 Score=138.00 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=69.4
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
+..++++|.|.++|| ||+++||+|++.++ .|+|+ |++... . ....++ +++|+|+|.||++||+++|+|+|..|
T Consensus 2 ~~~~~d~y~v~~dlp-G~~~edi~V~v~~~-~L~I~-g~~~~~-~-~~~~~~--~~eF~R~~~LP~~vd~~~v~A~~~~d 74 (83)
T cd06476 2 VESEDDKYQVFLDVC-HFTPDEITVRTVDN-LLEVS-ARHPQR-M-DRHGFV--SREFTRTYILPMDVDPLLVRASLSHD 74 (83)
T ss_pred eeccCCeEEEEEEcC-CCCHHHeEEEEECC-EEEEE-EEEcce-e-cCCCEE--EEEEEEEEECCCCCChhhEEEEecCC
Confidence 456789999999999 99999999999999 69999 976432 2 122233 56899999999999999999999449
Q ss_pred CEEEEEEec
Q 040821 177 GVLTVTFTK 185 (220)
Q Consensus 177 GVLtItlPK 185 (220)
|+|+|++||
T Consensus 75 GvL~I~~Pr 83 (83)
T cd06476 75 GILCIQAPR 83 (83)
T ss_pred CEEEEEecC
Confidence 999999997
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.81 E-value=1.5e-19 Score=136.44 Aligned_cols=81 Identities=10% Similarity=0.114 Sum_probs=69.2
Q ss_pred eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEE
Q 040821 100 KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVL 179 (220)
Q Consensus 100 ~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVL 179 (220)
+++.|+|.+||| ||+++||+|++.+| +|+|+ |+++.+.+++. ...+.+|+|.|+|.||++||.++|+|+|+++|||
T Consensus 6 ~~~~~~v~adlP-G~~kedI~V~v~~~-~L~I~-ger~~~~e~~~-~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l 81 (87)
T cd06482 6 DSSNVLASVDVC-GFEPDQVKVKVKDG-KVQVS-AERENRYDCLG-SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVV 81 (87)
T ss_pred cCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEecccccCC-ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEE
Confidence 678999999999 99999999999999 69999 98765433222 2234589999999999999999999999955699
Q ss_pred EEEEe
Q 040821 180 TVTFT 184 (220)
Q Consensus 180 tItlP 184 (220)
+|..|
T Consensus 82 ~i~~~ 86 (87)
T cd06482 82 KIETP 86 (87)
T ss_pred EEeeC
Confidence 99987
No 16
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.80 E-value=4.4e-19 Score=132.67 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=68.1
Q ss_pred EEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-ccC
Q 040821 98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-DDA 176 (220)
Q Consensus 98 ~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~~d 176 (220)
-|++++|.|.++|| ||+|+||+|++.++ +|+|+ |++..+.+ ...+ ..++|+|+|.||++|+.++|+|+| + |
T Consensus 3 ~e~~~~~~v~~dlp-G~~~edI~V~v~~~-~L~I~-ge~~~~~~--~~~~--~~r~F~R~~~LP~~Vd~~~v~A~~~~-d 74 (83)
T cd06477 3 EEGKPMFQILLDVV-QFRPEDIIIQVFEG-WLLIK-GQHGVRMD--EHGF--ISRSFTRQYQLPDGVEHKDLSAMLCH-D 74 (83)
T ss_pred ccCCceEEEEEEcC-CCCHHHeEEEEECC-EEEEE-EEEccccC--CCCE--EEEEEEEEEECCCCcchheEEEEEcC-C
Confidence 46889999999999 99999999999999 69999 98755332 2223 245999999999999999999998 7 9
Q ss_pred CEEEEEEe
Q 040821 177 GVLTVTFT 184 (220)
Q Consensus 177 GVLtItlP 184 (220)
|||+|++|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999986
No 17
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.79 E-value=3.8e-19 Score=131.61 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=66.9
Q ss_pred CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC-CEE
Q 040821 101 KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA-GVL 179 (220)
Q Consensus 101 ~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d-GVL 179 (220)
++.|.|.++|| ||+++||+|+++++ .|+|+ |++....+ ...+.+++|.|+|.||++||+++|+|+|. | |+|
T Consensus 6 ~~~~~v~~dlp-G~~~edI~v~v~~~-~L~I~-g~~~~~~~----~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVK-GFKPEELKVKVSDN-KLVVE-GKHEERED----EHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVL 77 (83)
T ss_pred CeeEEEEEECC-CCCHHHcEEEEECC-EEEEE-EEEeeecc----CCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEE
Confidence 36999999999 99999999999998 69999 98754322 11234789999999999999999999999 7 999
Q ss_pred EEEEec
Q 040821 180 TVTFTK 185 (220)
Q Consensus 180 tItlPK 185 (220)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.78 E-value=2.2e-18 Score=125.63 Aligned_cols=86 Identities=34% Similarity=0.506 Sum_probs=73.2
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEE--EEEeEEEEEEECCCCcccCceEEEe
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLM--CVDGKNFRSFILPDGVNPNGFKTAM 173 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~--r~~g~F~R~~~LPe~Vd~e~I~A~~ 173 (220)
++.|+++.|.+.++|| |+++++|+|++.++ .|.|+ |++............ +.++.|.|+|.||.++|.++++|.|
T Consensus 1 ~i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~-~l~I~-g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~ 77 (88)
T cd06464 1 DVYETDDAYVVEADLP-GFKKEDIKVEVEDG-VLTIS-GEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL 77 (88)
T ss_pred CcEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE
Confidence 5789999999999999 99999999999998 69999 977644332221111 2289999999999999999999999
Q ss_pred ccCCEEEEEEec
Q 040821 174 DDAGVLTVTFTK 185 (220)
Q Consensus 174 ~~dGVLtItlPK 185 (220)
+ ||+|+|++||
T Consensus 78 ~-~G~L~I~~pk 88 (88)
T cd06464 78 E-NGVLTITLPK 88 (88)
T ss_pred e-CCEEEEEEcC
Confidence 9 9999999997
No 19
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.3e-18 Score=144.81 Aligned_cols=108 Identities=20% Similarity=0.320 Sum_probs=93.4
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA 172 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~ 172 (220)
...++..++++|.|.+|+. .|+|++|+|++.++ +|.|+ |+ +.+ +.+.+..++++|.|+|.||++||+++|+++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~-~F~PeEl~Vk~~~~-~l~V~-gk-Hee---r~d~~G~v~R~F~R~y~LP~~vdp~~V~S~ 135 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVH-QFKPEELKVKTDDN-TLEVE-GK-HEE---KEDEHGYVSRSFVRKYLLPEDVDPTSVTST 135 (173)
T ss_pred cccccccCCCcEEEEEEcc-cCcccceEEEeCCC-EEEEE-ee-ecc---ccCCCCeEEEEEEEEecCCCCCChhheEEe
Confidence 4578899999999999999 99999999999999 79999 94 333 335566668899999999999999999999
Q ss_pred eccCCEEEEEEeccCCCCCCeeEEeccCCCcchhh
Q 040821 173 MDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHA 207 (220)
Q Consensus 173 ~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~ 207 (220)
+.+||+|||++||.+......+.|+|+.++..+..
T Consensus 136 LS~dGvLtI~ap~~~~~~~~er~ipI~~~~~~~~~ 170 (173)
T KOG3591|consen 136 LSSDGVLTIEAPKPPPKQDNERSIPIEQVGPSALS 170 (173)
T ss_pred eCCCceEEEEccCCCCcCccceEEeEeecCccccc
Confidence 99999999999999876657888888888776643
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.7e-18 Score=144.23 Aligned_cols=107 Identities=38% Similarity=0.504 Sum_probs=93.9
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccC--CCCeEEEE---EeEEEEEEECCCCc
Q 040821 90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEG--DTSTLMCV---DGKNFRSFILPDGV 164 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~--~~~~~~r~---~g~F~R~~~LPe~V 164 (220)
.+.+++++.|..++|.+.++|| |+++++++|+++++++|+|+ |++..+.++ ....++.. .|.|.|+|.||+++
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~P-gl~ke~iKv~~~~~~~l~is-Ge~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv 159 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLP-GLKKEDIKVEVEDEKVLTIS-GERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV 159 (196)
T ss_pred cccCCcccccCCCceEEEeeCC-CCCchhceEEeccCcEEEEe-cccccccccccCCccceeehhcccceEeeecCCccc
Confidence 3567788999999999999999 99999999999998789999 998776554 33455544 99999999999999
Q ss_pred ccCceEEEeccCCEEEEEEeccCC--CCCCeeEEecc
Q 040821 165 NPNGFKTAMDDAGVLTVTFTKLKP--EKKKLRPIAKK 199 (220)
Q Consensus 165 d~e~I~A~~~~dGVLtItlPK~e~--~k~r~i~I~I~ 199 (220)
+.+.|+|.|+ ||||+|++||..+ +++++++|.|+
T Consensus 160 ~~d~ikA~~~-nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 160 DVDEIKAEME-NGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred cHHHHHHHhh-CCeEEEEEecccccccCCccceeecc
Confidence 9999999999 9999999999988 57888888875
No 21
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.70 E-value=9.1e-17 Score=122.22 Aligned_cols=82 Identities=12% Similarity=0.170 Sum_probs=69.6
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
+..+++.|.|.+|+. ||++|||+|++.++ .|+|+ |++.... ++ .. ..+++|+|+|.||++||++.|+|+|.+|
T Consensus 10 ~~~~~~~f~v~ldv~-gF~pEDL~Vkv~~~-~L~V~-Gkh~~~~-~e-~g--~~~r~F~R~~~LP~~Vd~~~v~s~l~~d 82 (91)
T cd06480 10 PPNSSEPWKVCVNVH-SFKPEELTVKTKDG-FVEVS-GKHEEQQ-KE-GG--IVSKNFTKKIQLPPEVDPVTVFASLSPE 82 (91)
T ss_pred CCCCCCcEEEEEEeC-CCCHHHcEEEEECC-EEEEE-EEECccc-CC-CC--EEEEEEEEEEECCCCCCchhEEEEeCCC
Confidence 345788999999999 99999999999999 69999 9654332 22 22 3368999999999999999999999889
Q ss_pred CEEEEEEec
Q 040821 177 GVLTVTFTK 185 (220)
Q Consensus 177 GVLtItlPK 185 (220)
|+|+|++|.
T Consensus 83 GvL~IeaP~ 91 (91)
T cd06480 83 GLLIIEAPQ 91 (91)
T ss_pred CeEEEEcCC
Confidence 999999983
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.44 E-value=1.2e-12 Score=91.49 Aligned_cols=80 Identities=34% Similarity=0.509 Sum_probs=68.9
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
|+++++.|.|.+++| |+.+++++|.+.++ .|.|+ ++...... .....+.|.+++.||..+++++++|.|. +
T Consensus 1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~~~~-~l~v~-~~~~~~~~-----~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDN-VLTIS-GKREEEEE-----RERSYGEFERSFELPEDVDPEKSKASLE-N 71 (80)
T ss_pred CEEcCCEEEEEEECC-CCCHHHeEEEEECC-EEEEE-EEEcCCCc-----ceEeeeeEEEEEECCCCcCHHHCEEEEE-C
Confidence 578899999999999 99999999999998 59999 86533211 2223678999999999999999999999 9
Q ss_pred CEEEEEEec
Q 040821 177 GVLTVTFTK 185 (220)
Q Consensus 177 GVLtItlPK 185 (220)
|+|+|++||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.18 E-value=1.8e-10 Score=83.19 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=64.6
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
|+++++.+.|.+++| |+++++++|+++++ .|.|+ ++ .|.+++.||..+++++.+|++. +
T Consensus 1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~-~l~i~-~~-----------------~~~~~~~l~~~I~~e~~~~~~~-~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDL-YLKVN-FP-----------------PYLFELDLAAPIDDEKSSAKIG-N 59 (78)
T ss_pred CcccCCEEEEEEEeC-CCccccceEEEecC-EEEEc-CC-----------------CEEEEEeCcccccccccEEEEe-C
Confidence 568899999999999 99999999999998 69998 61 2678999999999999999999 9
Q ss_pred CEEEEEEeccCC
Q 040821 177 GVLTVTFTKLKP 188 (220)
Q Consensus 177 GVLtItlPK~e~ 188 (220)
|.|.|+|||.++
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999764
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.84 E-value=4.4e-08 Score=82.78 Aligned_cols=80 Identities=20% Similarity=0.362 Sum_probs=63.8
Q ss_pred CCCceeeEEEeCC-EEEEEEEcCCCCCCCC-eEEEEECCc-EEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCccc
Q 040821 90 LEKVSVQWKSKKG-VFHFKAHLPAGTKMED-MMVGIEGRK-SLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNP 166 (220)
Q Consensus 90 ~~~p~vDi~E~~d-~~~l~~dLP~G~~ked-I~V~v~~~~-vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~ 166 (220)
...+.+++.+.++ .+.|.|||| |+++++ |+|.++.+. .|+|+ . .+ .+.+++.||.. +.
T Consensus 89 ~~~~~vdtre~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~-~---------~~-------~~~krv~L~~~-~~ 149 (177)
T PF05455_consen 89 EESIHVDTRERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIR-V---------GE-------KYLKRVALPWP-DP 149 (177)
T ss_pred cceeeeeeEecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEe-c---------CC-------ceEeeEecCCC-cc
Confidence 3467889998777 699999999 999999 999999551 35555 2 11 24579999977 78
Q ss_pred CceEEEeccCCEEEEEEeccCCC
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~~ 189 (220)
+..+|+|+ ||||+|++-+.++.
T Consensus 150 e~~~~t~n-NgILEIri~~~~~~ 171 (177)
T PF05455_consen 150 EITSATFN-NGILEIRIRRTEES 171 (177)
T ss_pred ceeeEEEe-CceEEEEEeecCCC
Confidence 89999999 99999999998754
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.80 E-value=3.9e-08 Score=70.26 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=65.6
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
|.++++.+.|.+.+| |..+++++|.+.++ .|+|+ +... .+ +.|...+.|+..+++++..+++. +
T Consensus 1 W~Q~~~~v~i~v~~~-~~~~~~~~v~~~~~-~l~i~-~~~~-----~~-------~~~~~~~~L~~~I~~~~s~~~~~-~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLK-DVTKKDVKVEFTPK-SLTVS-VKGG-----GG-------KEYLLEGELFGPIDPEESKWTVE-D 64 (84)
T ss_pred CcccccEEEEEEEcC-CCCccceEEEEecC-EEEEE-eeCC-----CC-------CceEEeeEccCccchhhcEEEEe-C
Confidence 467899999999999 99999999999998 59999 6321 11 24678899999999999999999 9
Q ss_pred CEEEEEEeccCC
Q 040821 177 GVLTVTFTKLKP 188 (220)
Q Consensus 177 GVLtItlPK~e~ 188 (220)
|.|+|+|+|.++
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999875
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.44 E-value=8.5e-07 Score=64.46 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=66.0
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEecc
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDD 175 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~ 175 (220)
||+++++.+.|.+.+| |+.++++.|.+.++ .|.|+ .... .. +.|...+.|+..|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~-~l~i~-~~~~-----~~-------~~~~~~~~L~~~I~~~~s~~~~~- 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAK-NVDKEDVKVEFNEQ-SLSVS-IILP-----GG-------SEYQLELDLFGPIDPEQSKVSVL- 64 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEEecC-EEEEE-EECC-----CC-------CeEEEecccccccCchhcEEEEe-
Confidence 6899999999999999 99999999999998 59998 5321 11 13567889999999999999999
Q ss_pred CCEEEEEEeccCC
Q 040821 176 AGVLTVTFTKLKP 188 (220)
Q Consensus 176 dGVLtItlPK~e~ 188 (220)
+|.|+|+|.|.++
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999865
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.08 E-value=0.00012 Score=51.75 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=62.1
Q ss_pred ceeeEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821 93 VSVQWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~ 170 (220)
|+++|+++++...|.+.++ + +++++++|.+.+. .|.++ .... .+. .|.-.+.|...++++...
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~-~~~~~~~dv~v~~~~~-~l~v~-~~~~-----~~~-------~~~~~~~L~~~I~~~~s~ 65 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVK-PVDISKEDVKVDFTDT-SLSVS-IKSG-----DGK-------EYLLEGELFGEIDPDEST 65 (79)
T ss_dssp SSEEEEEESSEEEEEEE-T-TTTSSGGGEEEEEETT-EEEEE-EEET-----TSC-------EEEEEEEBSS-BECCCEE
T ss_pred CCeEEEECCCEEEEEEEEc-CCCCChHHeEEEEEee-EEEEE-EEcc-----CCc-------eEEEEEEEeeeEcchhcE
Confidence 6789999999999999995 4 4599999999999 59999 5211 111 355678899999999999
Q ss_pred EEeccCCEEEEEEec
Q 040821 171 TAMDDAGVLTVTFTK 185 (220)
Q Consensus 171 A~~~~dGVLtItlPK 185 (220)
.++. ++.|.|+|.|
T Consensus 66 ~~~~-~~~i~i~L~K 79 (79)
T PF04969_consen 66 WKVK-DNKIEITLKK 79 (79)
T ss_dssp EEEE-TTEEEEEEEB
T ss_pred EEEE-CCEEEEEEEC
Confidence 9999 8999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.70 E-value=0.00072 Score=52.00 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=65.0
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA 172 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~ 172 (220)
|+++|+++.+...|.+.+| |+ ++++|.+..+ .|.|+ +.. . ..+. .|.-.+.|...|++++.+.+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~-~~--~~~~V~~~~~-~l~v~-~~~-~---~~~~-------~y~~~~~L~~~I~pe~s~~~ 64 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELP-DA--KDPKIKLEPT-SLSFK-AKG-G---GGGK-------KYEFDLEFYKEIDPEESKYK 64 (108)
T ss_pred CceeeeECCCEEEEEEEeC-CC--CCcEEEEECC-EEEEE-EEc-C---CCCe-------eEEEEeEhhhhccccccEEE
Confidence 5789999999999999999 88 8899999999 59999 621 1 0111 24457789999999999999
Q ss_pred eccCCEEEEEEeccC
Q 040821 173 MDDAGVLTVTFTKLK 187 (220)
Q Consensus 173 ~~~dGVLtItlPK~e 187 (220)
+. ++-|.|+|.|.+
T Consensus 65 v~-~~kveI~L~K~~ 78 (108)
T cd06465 65 VT-GRQIEFVLRKKE 78 (108)
T ss_pred ec-CCeEEEEEEECC
Confidence 99 899999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.58 E-value=0.0004 Score=62.43 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=55.6
Q ss_pred CCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEec-cCCE
Q 040821 101 KGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMD-DAGV 178 (220)
Q Consensus 101 ~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~-~dGV 178 (220)
.+.++|+++|| |+ +..+|.++|.+.+ |.|. ... .. |.-.+.||..||.+..+|+|. ..++
T Consensus 260 p~~lvv~i~LP-~~~s~~~i~LdV~~~~-l~l~-~~~--------~~-------y~L~l~LP~~V~~~~~~Akf~~~~~~ 321 (328)
T PF08190_consen 260 PEELVVEIELP-GVESASDIDLDVSEDR-LSLS-SPK--------PK-------YRLDLPLPYPVDEDNGKAKFDKKTKT 321 (328)
T ss_pred CceEEEEEECC-CcCccceeEEEEeCCE-EEEE-eCC--------Cc-------eEEEccCCCcccCCCceEEEccCCCE
Confidence 58899999999 99 8999999999995 9888 421 12 345799999999999999994 1489
Q ss_pred EEEEEe
Q 040821 179 LTVTFT 184 (220)
Q Consensus 179 LtItlP 184 (220)
|+||||
T Consensus 322 L~vtlp 327 (328)
T PF08190_consen 322 LTVTLP 327 (328)
T ss_pred EEEEEE
Confidence 999998
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.41 E-value=0.0017 Score=47.14 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=61.0
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEecc
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDD 175 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~ 175 (220)
.|+++++...|.+.+|.++.++|++|++.++ .|.|+ ... +... -.-.|...++++...-++.
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~-~~~--------~~~~-------l~~~L~~~I~~~~s~w~~~- 63 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVG-VKG--------GEPL-------LDGELYAKVKVDESTWTLE- 63 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEE-ECC--------CCce-------EcCcccCceeEcCCEEEEe-
Confidence 6899999999999998789999999999998 59999 521 1111 1235788999998888899
Q ss_pred C-CEEEEEEeccCC
Q 040821 176 A-GVLTVTFTKLKP 188 (220)
Q Consensus 176 d-GVLtItlPK~e~ 188 (220)
+ ..|.|+|+|.++
T Consensus 64 ~~~~v~i~L~K~~~ 77 (85)
T cd06467 64 DGKLLEITLEKRNE 77 (85)
T ss_pred CCCEEEEEEEECCC
Confidence 8 899999999875
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.40 E-value=0.0015 Score=47.81 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=63.3
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEecc
Q 040821 96 QWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDD 175 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~ 175 (220)
||+++++...|.+.++ |+.++++.|++.++ .|.++ +... .+.. |.-.+.|...+++++.+.+..
T Consensus 1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~~~~-~l~~~-~~~~-----~~~~-------y~~~~~L~~~I~p~~s~~~v~- 64 (84)
T cd06489 1 DWYQTESQVVITILIK-NVKPEDVSVEFEKR-ELSAT-VKLP-----SGND-------YSLKLHLLHPIVPEQSSYKIL- 64 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEEeCC-EEEEE-EECC-----CCCc-------EEEeeecCceecchhcEEEEe-
Confidence 6889999999999999 99999999999998 59998 6321 1112 345678999999998888888
Q ss_pred CCEEEEEEeccCC
Q 040821 176 AGVLTVTFTKLKP 188 (220)
Q Consensus 176 dGVLtItlPK~e~ 188 (220)
.+-+.|+|.|.+.
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 7889999999764
No 32
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.02 E-value=0.012 Score=44.86 Aligned_cols=78 Identities=15% Similarity=0.282 Sum_probs=61.8
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.+.+.|.++.+...|.+.||.|+++.|++|.+..++ |+|. - + ++. ...| .|...|+++.-.=
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~-l~V~-~-~-------g~~--~l~G------~L~~~I~~destW 66 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRD-ISLA-V-K-------GQE--VLKG------KLFDSVVADECTW 66 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCE-EEEE-E-C-------CEE--EEcC------cccCccCcccCEE
Confidence 466899999999999999999999999999999995 9988 3 1 111 1123 4667888888777
Q ss_pred EeccCC-EEEEEEeccCC
Q 040821 172 AMDDAG-VLTVTFTKLKP 188 (220)
Q Consensus 172 ~~~~dG-VLtItlPK~e~ 188 (220)
+++ +| +|.|+|.|.+.
T Consensus 67 tle-d~k~l~I~L~K~~~ 83 (93)
T cd06494 67 TLE-DRKLIRIVLTKSNR 83 (93)
T ss_pred EEE-CCcEEEEEEEeCCC
Confidence 888 55 68999999763
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.98 E-value=0.013 Score=43.27 Aligned_cols=79 Identities=15% Similarity=0.232 Sum_probs=62.9
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCC---CCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEE-ECCCCcccCce
Q 040821 94 SVQWKSKKGVFHFKAHLPAGTKM---EDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSF-ILPDGVNPNGF 169 (220)
Q Consensus 94 ~vDi~E~~d~~~l~~dLP~G~~k---edI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~-~LPe~Vd~e~I 169 (220)
..+|+++++...|.+.+| +..+ ++++|++..+ .|.|+ + ... ++.. |.-.+ .|-..+++++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~-~~~~~~~~~v~v~~~~~-~l~v~-~-~~~----~~~~-------~~~~~~~L~~~I~~e~s 67 (92)
T cd06468 3 KYAWDQSDKFVKIYITLK-GVHQLPKENIQVEFTER-SFELK-V-HDL----NGKN-------YRFTINRLLKKIDPEKS 67 (92)
T ss_pred eeeeecCCCEEEEEEEcc-CCCcCCcccEEEEecCC-EEEEE-E-ECC----CCcE-------EEEEehHhhCccCcccc
Confidence 478999999999999999 8876 9999999998 59998 6 211 1222 22244 38889999999
Q ss_pred EEEeccCCEEEEEEeccCC
Q 040821 170 KTAMDDAGVLTVTFTKLKP 188 (220)
Q Consensus 170 ~A~~~~dGVLtItlPK~e~ 188 (220)
+..+. .+-+.|+|.|.++
T Consensus 68 ~~~~~-~~ki~i~L~K~~~ 85 (92)
T cd06468 68 SFKVK-TDRIVITLAKKKE 85 (92)
T ss_pred EEEEe-CCEEEEEEEeCCC
Confidence 99999 7889999999875
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.97 E-value=0.012 Score=43.60 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=65.5
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM 173 (220)
Q Consensus 94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~ 173 (220)
+.||+++++...|.+-+. |+.++++.++++++ .|+++ ..-+ .++ .|.-.+.|-..++++..+-..
T Consensus 2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~~~~-~l~v~-~~~~-----~~~-------~y~~~l~L~~~I~~~~s~~~v 66 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEANST-VLTIH-IVFE-----GNK-------EFQLDIELWGVIDVEKSSVNM 66 (87)
T ss_pred CccEeeCCCEEEEEEEEC-cCCccceEEEecCC-EEEEE-EECC-----CCc-------eEEEEeeccceEChhHcEEEe
Confidence 479999999999999999 99999999999987 58887 4221 111 245677899999999988888
Q ss_pred ccCCEEEEEEeccCCC
Q 040821 174 DDAGVLTVTFTKLKPE 189 (220)
Q Consensus 174 ~~dGVLtItlPK~e~~ 189 (220)
. .+-+.|+|.|.++.
T Consensus 67 ~-~~kvei~L~K~~~~ 81 (87)
T cd06488 67 L-PTKVEIKLRKAEPG 81 (87)
T ss_pred c-CcEEEEEEEeCCCC
Confidence 8 89999999998753
No 35
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.94 E-value=0.014 Score=42.96 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=59.0
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEec
Q 040821 95 VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMD 174 (220)
Q Consensus 95 vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~ 174 (220)
++|+++.+...|.+.+|.|++++|++|++..++ |.+. . + . +.. + -.-.|...++++.-.=.++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~-l~v~-~-~-~-----~~~-------~-~~g~L~~~I~~d~Stw~i~ 63 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDH-ISIA-L-K-D-----QAP-------L-LEGKLYSSIDHESSTWIIK 63 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCE-EEEE-e-C-C-----CCe-------E-EeCcccCcccccCcEEEEe
Confidence 368999999999999965999999999999985 8888 4 1 0 011 1 1236788899998766777
Q ss_pred cCC-EEEEEEeccCC
Q 040821 175 DAG-VLTVTFTKLKP 188 (220)
Q Consensus 175 ~dG-VLtItlPK~e~ 188 (220)
+| .|.|+|.|.++
T Consensus 64 -~~~~l~i~L~K~~~ 77 (85)
T cd06493 64 -ENKSLEVSLIKKDE 77 (85)
T ss_pred -CCCEEEEEEEECCC
Confidence 66 79999999864
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.33 E-value=0.083 Score=41.07 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=60.8
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA 172 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~ 172 (220)
|+++|+++.+...|++++| + .+|++|+++++ .|+++ | ... ++..|+ -.+.|=..|++++-+-+
T Consensus 2 p~v~WaQr~~~V~ltI~v~-d--~~d~~v~l~~~-~l~f~-~-~~~----~g~~y~-------~~l~l~~~I~pe~Sk~~ 64 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVE-D--SKDVKVDFEKS-KLTFS-C-LNG----DNVKIY-------NEIELYDRVDPNDSKHK 64 (106)
T ss_pred CcceeeECCCEEEEEEEeC-C--CCCcEEEEecC-EEEEE-E-ECC----CCcEEE-------EEEEeecccCcccCeEE
Confidence 6799999999999999999 8 58999999998 59999 7 221 222232 35677778898877777
Q ss_pred eccCCEEEEEEeccCCC
Q 040821 173 MDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 173 ~~~dGVLtItlPK~e~~ 189 (220)
.. .--+.|.|.|+++.
T Consensus 65 v~-~r~ve~~L~K~~~~ 80 (106)
T cd00237 65 RT-DRSILCCLRKGKEG 80 (106)
T ss_pred eC-CceEEEEEEeCCCC
Confidence 66 56788899998643
No 37
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.77 E-value=0.21 Score=46.02 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=65.9
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.++.||+++++.+.|.+-+. |+.++++.|++.++ .|.|+ -.. . .+.. |...+.|-..|++++.+.
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~-~l~v~-~~~--~---~~~~-------y~~~~~L~~~I~p~~s~~ 220 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQ-ILSVV-IEV--P---GEDA-------YHLQPRLFGKIIPDKCKY 220 (356)
T ss_pred ccccceeecCCEEEEEEEec-CCChHHcEEEeecC-EEEEE-Eec--C---CCcc-------eeecccccccccccccEE
Confidence 47889999999999999999 99999999999998 59998 421 1 1112 334578889999999888
Q ss_pred EeccCCEEEEEEeccCC
Q 040821 172 AMDDAGVLTVTFTKLKP 188 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e~ 188 (220)
+.. ---+.|+|.|.+.
T Consensus 221 ~v~-~~Kiei~l~K~~~ 236 (356)
T PLN03088 221 EVL-STKIEIRLAKAEP 236 (356)
T ss_pred EEe-cceEEEEEecCCC
Confidence 888 5688999999764
No 38
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.10 E-value=0.54 Score=35.09 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=55.0
Q ss_pred eEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821 96 QWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM 173 (220)
Q Consensus 96 Di~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~ 173 (220)
.|..+.+...|.+.||.| +++.|++|.+..+ .|.|. - + +.. ....| .|...|+++.-.=.+
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~-~-~-------g~~-~~i~G------~L~~~V~~des~Wtl 64 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVG-L-K-------GQP-PIIDG------ELYNEVKVEESSWLI 64 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEE-E-C-------CCc-eEEeC------cccCcccccccEEEE
Confidence 367788899999999755 8899999999999 48888 3 1 111 01123 356678888766678
Q ss_pred ccCC-EEEEEEeccCC
Q 040821 174 DDAG-VLTVTFTKLKP 188 (220)
Q Consensus 174 ~~dG-VLtItlPK~e~ 188 (220)
+ +| .|.|+|-|...
T Consensus 65 e-d~~~l~i~L~K~~~ 79 (87)
T cd06492 65 E-DGKVVTVNLEKINK 79 (87)
T ss_pred e-CCCEEEEEEEECCC
Confidence 8 75 89999999854
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=94.05 E-value=0.21 Score=42.85 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.++.||++++...+|.+-.+ ++.++|+.|++.++ +|.|. - ..+ .++.|+ -...|-..|.+++.+-
T Consensus 3 k~r~DwyQt~~~vvIti~~k-~v~~~~v~v~~s~~-~l~~~-~--~~~---~g~~~~-------l~~~L~~~I~pe~~s~ 67 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAK-NVPKEDVNVEISEN-TLSIV-I--QLP---SGSEYN-------LQLKLYHEIIPEKSSF 67 (196)
T ss_pred cccceeecCCceEEEEEEec-CCCccceeEEeecc-eEEEE-E--ecC---Cchhhh-------hhHHhcccccccceee
Confidence 46789999999999999999 99999999999988 68888 3 222 122222 2233555667776555
Q ss_pred EeccCCEEEEEEeccC
Q 040821 172 AMDDAGVLTVTFTKLK 187 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e 187 (220)
..- ---++|+|+|.+
T Consensus 68 k~~-stKVEI~L~K~~ 82 (196)
T KOG1309|consen 68 KVF-STKVEITLAKAE 82 (196)
T ss_pred Eee-eeeEEEEecccc
Confidence 444 356678888854
No 40
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.81 E-value=1.4 Score=34.14 Aligned_cols=81 Identities=11% Similarity=0.296 Sum_probs=59.1
Q ss_pred CceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~ 170 (220)
...+.|..+-+...|.+.||.|. +..|+.|++...+ |.|. - +. .+.+.. ...| .|...|+.+.-.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~-l~v~-~-~~----~~~~~~-~i~G------~L~~~V~~des~ 69 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSS-IRVS-V-RD----GGGEKV-LMEG------EFTHKINTENSL 69 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCE-EEEE-E-ec----CCCCce-EEeC------cccCcccCccce
Confidence 35678999999999999999774 6899999999995 9888 3 10 001111 1233 466788888766
Q ss_pred EEeccCC-EEEEEEeccC
Q 040821 171 TAMDDAG-VLTVTFTKLK 187 (220)
Q Consensus 171 A~~~~dG-VLtItlPK~e 187 (220)
=.++ || .|.|+|-|..
T Consensus 70 Wtle-d~~~l~I~L~K~~ 86 (102)
T cd06495 70 WSLE-PGKCVLLSLSKCS 86 (102)
T ss_pred EEEe-CCCEEEEEEEECC
Confidence 6788 75 5899999975
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=90.97 E-value=5.1 Score=29.66 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=52.3
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCCeE--EEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCc-eEE
Q 040821 95 VQWKSKKGVFHFKAHLPAGTKMEDMM--VGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNG-FKT 171 (220)
Q Consensus 95 vDi~E~~d~~~l~~dLP~G~~kedI~--V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~-I~A 171 (220)
.||+++++...|.+=.. +....+.. +....+ .|.|+ - ..+ +. .|...+.|=..++++. ++.
T Consensus 1 ~DWyQt~~~Vtitiy~K-~~~~~~~~v~v~~~~~-~l~v~-~--~~~----~~-------~~~~~~~L~~~I~~~~~~~~ 64 (87)
T cd06490 1 YDWFQTDSEVTIVVYTK-SKGNPADIVIVDDQQR-ELRVE-I--ILG----DK-------SYLLHLDLSNEVQWPCEVRI 64 (87)
T ss_pred CCceECCCEEEEEEEEc-ccCCCCccEEEECCCC-EEEEE-E--ECC----Cc-------eEEEeeeccccCCCCcEEEE
Confidence 38999999999999877 65544544 554555 58888 3 111 11 2456678888888774 443
Q ss_pred EeccCCEEEEEEeccCCC
Q 040821 172 AMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e~~ 189 (220)
.-. -|-++|+|.|.++.
T Consensus 65 ~~~-~~KVEI~L~K~e~~ 81 (87)
T cd06490 65 STE-TGKIELVLKKKEPE 81 (87)
T ss_pred ccc-CceEEEEEEcCCCC
Confidence 333 47899999998753
No 42
>PF14913 DPCD: DPCD protein family
Probab=80.96 E-value=16 Score=31.64 Aligned_cols=77 Identities=14% Similarity=0.353 Sum_probs=59.6
Q ss_pred CCceeeEEEeCCEEEEEE-EcCCCCCCCCeEEEEECC-cEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCC------
Q 040821 91 EKVSVQWKSKKGVFHFKA-HLPAGTKMEDMMVGIEGR-KSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPD------ 162 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~-dLP~G~~kedI~V~v~~~-~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe------ 162 (220)
..|-+-=..+...|+-++ +|| ..++--+|.++++ +.++|+ .. +.+ |.++|.+|+
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP--YP~dvYsVtvd~~~r~ivvR-Tt--------NKK-------YyKk~~IPDl~R~~l 146 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP--YPKDVYSVTVDEDERCIVVR-TT--------NKK-------YYKKFSIPDLDRCGL 146 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC--CCccceEEEEcCCCcEEEEE-Cc--------Ccc-------ceeEecCCcHHhhCC
Confidence 355565678889999998 899 8899999999875 357777 31 223 557899997
Q ss_pred CcccCceEEEeccCCEEEEEEecc
Q 040821 163 GVNPNGFKTAMDDAGVLTVTFTKL 186 (220)
Q Consensus 163 ~Vd~e~I~A~~~~dGVLtItlPK~ 186 (220)
..+.+.++.... |..|.|+..|.
T Consensus 147 ~l~~~~ls~~h~-nNTLIIsYkKP 169 (194)
T PF14913_consen 147 PLEQSALSFAHQ-NNTLIISYKKP 169 (194)
T ss_pred Ccchhhceeeee-cCeEEEEecCc
Confidence 347778888999 99999999885
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=75.74 E-value=5.5 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=28.9
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEeccC
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e 187 (220)
.|.-+..|| +++.++|+-++. ||.|+|+..+.+
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~-~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVK-DGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEEec
Confidence 466788898 889999999999 999999998864
No 44
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=73.77 E-value=1.8 Score=30.61 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=14.5
Q ss_pred hhhhcccCC--chhHHhhhhcc
Q 040821 33 SFLKKKEGD--TTSQIIRMEFN 52 (220)
Q Consensus 33 ~~~~~~~~~--~~~~~~~~~f~ 52 (220)
|++.|+||+ .||||.+|.|+
T Consensus 8 Pw~rR~~~~~~~PsRiFDQ~FG 29 (59)
T PF00525_consen 8 PWFRRPLWPFFFPSRIFDQNFG 29 (59)
T ss_dssp HHHHGGGSSSS-SCHHHCTTSE
T ss_pred cccccccccccCchhhHHHhhc
Confidence 889999985 77777776554
No 45
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=72.46 E-value=5.9 Score=29.19 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=28.9
Q ss_pred CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 101 KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 101 ~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
...|.-.+.||.++..+.++-.+.|| +|+|+
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~ 89 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVT 89 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEE
Confidence 57899999999889999999999999 89998
No 46
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=69.73 E-value=9.3 Score=28.22 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=28.5
Q ss_pred eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeecc
Q 040821 100 KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKT 139 (220)
Q Consensus 100 ~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e 139 (220)
....|.-.+.||.++..+.|+-.+.+| +|+|. ..+...
T Consensus 53 ~~~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~-~pk~~~ 90 (102)
T PF00011_consen 53 RYGSFERSIRLPEDVDPDKIKASYENG-VLTIT-IPKKEE 90 (102)
T ss_dssp -SEEEEEEEE-STTB-GGG-EEEETTS-EEEEE-EEBSSS
T ss_pred ccceEEEEEcCCCcCCcceEEEEecCC-EEEEE-EEcccc
Confidence 456788899999999999999999998 89999 655443
No 47
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=68.68 E-value=11 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=27.5
Q ss_pred EEEEEEEcCCCCCCCCeEEEE-ECCcEEEEEec
Q 040821 103 VFHFKAHLPAGTKMEDMMVGI-EGRKSLMIGIC 134 (220)
Q Consensus 103 ~~~l~~dLP~G~~kedI~V~v-~~~~vL~Is~G 134 (220)
.|.=.+.||.+++.+.|+-.+ .+| +|+|. |
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dG-vL~I~-~ 81 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDG-ILVVE-T 81 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCC-EEEEE-e
Confidence 888899999899999999997 688 89999 7
No 48
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=67.74 E-value=11 Score=26.52 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.4
Q ss_pred EEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 98 ~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
......|.-.+.||.++..+.++..+.+| +|+|.
T Consensus 52 ~~~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~ 85 (88)
T cd06464 52 ERSYGSFSRSFRLPEDVDPDKIKASLENG-VLTIT 85 (88)
T ss_pred EEeCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEE
Confidence 34468899999999999999999999998 89998
No 49
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=67.00 E-value=13 Score=27.27 Aligned_cols=32 Identities=3% Similarity=-0.002 Sum_probs=28.4
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEecc
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKL 186 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~ 186 (220)
.|.=.+.|| +++++.|+-++. +|.|+|+..+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~-~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVL-GDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEEc
Confidence 477789998 899999999999 99999999764
No 50
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=66.10 E-value=13 Score=27.49 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=29.8
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEeccCCC
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e~~ 189 (220)
.|.=.+.|| +++.+.|+-.+. +|.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~-~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVE-NNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEEcccc
Confidence 566789999 689999999999 99999998876543
No 51
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=64.82 E-value=14 Score=27.14 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEeccC
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e 187 (220)
.|.=.+.|| +++++.|+-++. +|.|+|+..|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~-~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTS-NNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEEec
Confidence 466788998 889999999999 999999998754
No 52
>PRK10743 heat shock protein IbpA; Provisional
Probab=64.59 E-value=14 Score=29.83 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=24.4
Q ss_pred EEEECCCCcccCceEEEeccCCEEEEEEeccC
Q 040821 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187 (220)
Q Consensus 156 R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e 187 (220)
-+..|| +++.+.|+-+++ +|+|+|+.-+.+
T Consensus 49 v~aelP-Gv~kedi~V~v~-~~~LtI~ge~~~ 78 (137)
T PRK10743 49 IAIAVA-GFAESELEITAQ-DNLLVVKGAHAD 78 (137)
T ss_pred EEEECC-CCCHHHeEEEEE-CCEEEEEEEECc
Confidence 345666 788999999999 999999987654
No 53
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=64.36 E-value=56 Score=25.79 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=49.8
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE--EeEEEEEEECCCCcccCceE
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV--DGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~--~g~F~R~~~LPe~Vd~e~I~ 170 (220)
..+.|...++ ..+.++.. |= .++++.+++ +|.|+ .+ ..+. -....+... ...-.-.+.||++...++++
T Consensus 66 ~~V~I~~~~~-~~i~v~~~-~k---~~~~~~~~~-~L~I~-~~-~~~~-~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~ 136 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEYN-GK---KPEISVEGG-TLTIK-SK-DRES-FFFKGFNFNNSDNKSKITIYLPKDYKLDKID 136 (166)
T ss_pred eeEEEEEcCC-ccEEEEEc-Cc---EEEEEEcCC-EEEEE-Ee-cccc-cccceEEEcccCCCcEEEEEECCCCceeEEE
Confidence 3466666443 55555554 32 788899888 69999 63 1110 001122111 13445589999999889999
Q ss_pred EEeccCCEEEEE
Q 040821 171 TAMDDAGVLTVT 182 (220)
Q Consensus 171 A~~~~dGVLtIt 182 (220)
.... +|=+++.
T Consensus 137 i~~~-~G~i~i~ 147 (166)
T PF13349_consen 137 IKTS-SGDITIE 147 (166)
T ss_pred EEec-cccEEEE
Confidence 9999 8977765
No 54
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=63.55 E-value=11 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=27.8
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEEC-CcEEEEE
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEG-RKSLMIG 132 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~-~~vL~Is 132 (220)
..|.=.+.||.++.++.++-.+.+ | +|+|+
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~G-vL~I~ 80 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDG-VLTIE 80 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCc-EEEEE
Confidence 678889999989999999999998 7 89998
No 55
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=61.96 E-value=16 Score=27.07 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=29.1
Q ss_pred eCCEEEEEEEcCCCCCCCCeEEEE-ECCcEEEEE
Q 040821 100 KKGVFHFKAHLPAGTKMEDMMVGI-EGRKSLMIG 132 (220)
Q Consensus 100 ~~d~~~l~~dLP~G~~kedI~V~v-~~~~vL~Is 132 (220)
....|.=.+.||.++.++.|+-.+ .+| +|+|.
T Consensus 52 ~~~~F~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~ 84 (87)
T cd06481 52 EYQEFVREAQLPEHVDPEAVTCSLSPSG-HLHIR 84 (87)
T ss_pred EeeEEEEEEECCCCcChHHeEEEeCCCc-eEEEE
Confidence 467899999999889999999999 888 89998
No 56
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.36 E-value=24 Score=28.28 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=27.6
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
..|.-.+.||++++++.++-++.|| +|+|.
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~ 129 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVT 129 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEE
Confidence 6788889999889999999999999 99999
No 57
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=60.29 E-value=14 Score=27.10 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 101 KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 101 ~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
-+.|.-.+.|| .+.++.++-++.|| +|+|.
T Consensus 61 ~g~f~r~~~lp-~v~~~~i~A~~~dG-vL~I~ 90 (93)
T cd06471 61 YGSFSRSFYLP-NVDEEEIKAKYENG-VLKIT 90 (93)
T ss_pred ccEEEEEEECC-CCCHHHCEEEEECC-EEEEE
Confidence 46788888999 99999999999999 89998
No 58
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=56.83 E-value=58 Score=27.89 Aligned_cols=79 Identities=15% Similarity=0.279 Sum_probs=56.8
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCce
Q 040821 90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGF 169 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I 169 (220)
...|.+-|.+..+...+++.|+ ...+.+|.++.. .|+++ |. .. .+.+ .+.-.+.|=..||+++.
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ve---d~~d~~v~~e~~-~l~fs-~k-~~-----~d~~-----~~~~~ief~~eIdpe~s 68 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVE---DAKDVHVNLEPS-KLTFS-CK-SG-----ADNH-----KYENEIEFFDEIDPEKS 68 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEec---cCccceeecccc-EEEEE-ec-cC-----CCce-----eeEEeeehhhhcCHhhc
Confidence 3567889999999999999999 566788888888 59999 83 22 1222 24456888889999987
Q ss_pred EEEeccCCEEEEEEecc
Q 040821 170 KTAMDDAGVLTVTFTKL 186 (220)
Q Consensus 170 ~A~~~~dGVLtItlPK~ 186 (220)
+-+-. +-+...++++
T Consensus 69 k~k~~--~r~if~i~~K 83 (180)
T KOG3158|consen 69 KHKRT--SRSIFCILRK 83 (180)
T ss_pred ccccc--ceEEEEEEEc
Confidence 76666 4455555544
No 59
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=56.01 E-value=25 Score=26.59 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=27.9
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEE-CCcEEEEEec
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIE-GRKSLMIGIC 134 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~-~~~vL~Is~G 134 (220)
..|.=.+.||.+++.++|+=.+. +| +|+|+ +
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Ie-a 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIE-A 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEE-c
Confidence 67888899999999999999999 66 89998 5
No 60
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=55.48 E-value=18 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCCCCCeEEEE-ECCcEEEEE
Q 040821 104 FHFKAHLPAGTKMEDMMVGI-EGRKSLMIG 132 (220)
Q Consensus 104 ~~l~~dLP~G~~kedI~V~v-~~~~vL~Is 132 (220)
|.=.+.||.++.+++|+-.+ .+| +|+|+
T Consensus 55 f~R~~~LP~~Vd~~~i~A~~~~dG-vL~I~ 83 (86)
T cd06497 55 FHRRYRLPSNVDQSAITCSLSADG-MLTFS 83 (86)
T ss_pred EEEEEECCCCCChHHeEEEeCCCC-EEEEE
Confidence 88889999889999999999 688 89998
No 61
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=54.46 E-value=27 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=27.2
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
+.|.+.++||+.+.+++.+..+.++ .|.|.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~ 65 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFT 65 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEE
Confidence 5689999999779999999999999 69999
No 62
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=54.30 E-value=19 Score=26.51 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEEEEcCCCCCCCCeEEEEE-CCcEEEEE
Q 040821 103 VFHFKAHLPAGTKMEDMMVGIE-GRKSLMIG 132 (220)
Q Consensus 103 ~~~l~~dLP~G~~kedI~V~v~-~~~vL~Is 132 (220)
+|.=.+.||.+++++.|+-++. +| +|+|.
T Consensus 51 eF~R~~~LP~~vd~~~i~A~~~~dG-vL~I~ 80 (84)
T cd06498 51 EFQRKYRIPADVDPLTITSSLSPDG-VLTVC 80 (84)
T ss_pred EEEEEEECCCCCChHHcEEEeCCCC-EEEEE
Confidence 4888899998999999999996 88 89999
No 63
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=51.97 E-value=30 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=24.1
Q ss_pred EEEEECCCCcccCceEEEeccCCEEEEEEeccC
Q 040821 155 FRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187 (220)
Q Consensus 155 ~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e 187 (220)
.=+..|| +++.+.|+-.++ +|+|+|+.-+..
T Consensus 46 ~v~adlP-Gv~kedi~V~v~-~~~LtI~ge~~~ 76 (142)
T PRK11597 46 RITLALA-GFRQEDLDIQLE-GTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEeC-CCCHHHeEEEEE-CCEEEEEEEEcc
Confidence 3455666 788889999999 999999987643
No 64
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=50.44 E-value=34 Score=22.62 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=28.3
Q ss_pred eCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 100 KKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 100 ~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
....|...+.||..+.+++++..+.+| .|+|.
T Consensus 46 ~~~~~~~~~~L~~~i~~~~~~~~~~~~-~l~i~ 77 (80)
T cd00298 46 SYGEFERSFELPEDVDPEKSKASLENG-VLEIT 77 (80)
T ss_pred eeeeEEEEEECCCCcCHHHCEEEEECC-EEEEE
Confidence 357899999999779999999999998 69987
No 65
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=48.85 E-value=1.2e+02 Score=23.19 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCceeeEEEeCCEEEEEEEcC----CCCCCCCeEEEEECCcEEEEE
Q 040821 91 EKVSVQWKSKKGVFHFKAHLP----AGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP----~G~~kedI~V~v~~~~vL~Is 132 (220)
..|.+.|+++++.|.|.+--+ +...++...|.-++| .+-|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 479999999999999988554 123677777887777 47776
No 66
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=48.77 E-value=36 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=26.3
Q ss_pred EEEEEEEcCCCCCCCCeEEEEE-CCcEEEEE
Q 040821 103 VFHFKAHLPAGTKMEDMMVGIE-GRKSLMIG 132 (220)
Q Consensus 103 ~~~l~~dLP~G~~kedI~V~v~-~~~vL~Is 132 (220)
.|.=.+.||.+++++.|+=.+. +| +|+|+
T Consensus 51 eF~R~~~LP~~vd~~~v~A~~~~dG-vL~I~ 80 (83)
T cd06476 51 EFTRTYILPMDVDPLLVRASLSHDG-ILCIQ 80 (83)
T ss_pred EEEEEEECCCCCChhhEEEEecCCC-EEEEE
Confidence 3888899998899999999996 88 89998
No 67
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=45.84 E-value=1.3e+02 Score=25.74 Aligned_cols=79 Identities=19% Similarity=0.378 Sum_probs=55.8
Q ss_pred CceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~ 170 (220)
.+.+.|..|=..+.|.+.||.|+ +..+|.+.+...+ |.|.+. ... ....|. |...|+.+.-.
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~h-I~V~~k--g~~--------~ildG~------L~~~vk~des~ 80 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKH-IKVGLK--GQP--------PILDGE------LSHSVKVDEST 80 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeE-EEEecC--CCC--------ceecCc------cccccccccce
Confidence 45578999999999999999899 9999999999885 777721 110 111232 44567777767
Q ss_pred EEeccCCEEEEEEeccCC
Q 040821 171 TAMDDAGVLTVTFTKLKP 188 (220)
Q Consensus 171 A~~~~dGVLtItlPK~e~ 188 (220)
=.++ ||.+.|.+-++..
T Consensus 81 WtiE-d~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 81 WTIE-DGKMIVILLKKSN 97 (179)
T ss_pred EEec-CCEEEEEEeeccc
Confidence 7889 8877776666543
No 68
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=44.23 E-value=32 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=26.9
Q ss_pred EEEEEEEcCCCCCCCCeEEEEE-CCcEEEEE
Q 040821 103 VFHFKAHLPAGTKMEDMMVGIE-GRKSLMIG 132 (220)
Q Consensus 103 ~~~l~~dLP~G~~kedI~V~v~-~~~vL~Is 132 (220)
.|.=.+.||.+++++.|+-.+. +| +|+|.
T Consensus 54 ~f~R~f~LP~~vd~~~v~A~~~~dG-vL~I~ 83 (86)
T cd06475 54 CFTRKYTLPPGVDPTAVTSSLSPDG-ILTVE 83 (86)
T ss_pred EEEEEEECCCCCCHHHcEEEECCCC-eEEEE
Confidence 7888999998899999999997 88 89998
No 69
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=39.23 E-value=46 Score=24.82 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=9.7
Q ss_pred CCCCCeEEEEECCcEEEEE
Q 040821 114 TKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 114 ~~kedI~V~v~~~~vL~Is 132 (220)
|+.+.|.++...| .|+|+
T Consensus 41 y~~~~I~l~t~~G-~l~I~ 58 (85)
T TIGR02856 41 FSPEEVKLNSTNG-KITIE 58 (85)
T ss_pred ECCCEEEEEcCce-EEEEE
Confidence 4455555555555 35555
No 70
>PRK14290 chaperone protein DnaJ; Provisional
Probab=38.24 E-value=1.6e+02 Score=27.42 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=17.8
Q ss_pred EEECCCCcccCceEEEeccCCEEEEEEecc
Q 040821 157 SFILPDGVNPNGFKTAMDDAGVLTVTFTKL 186 (220)
Q Consensus 157 ~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~ 186 (220)
.+.|.+.+--..+.-..- +|.++|.+|..
T Consensus 277 ~Isl~eAl~G~~~~I~~~-~g~i~V~Ip~g 305 (365)
T PRK14290 277 KINFPQAALGGEIEIKLF-REKYNLKIPEG 305 (365)
T ss_pred EeCHHHHhCCCEEEEEcC-CceEEEEECCc
Confidence 445545554455555556 78888888853
No 71
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=37.89 E-value=23 Score=32.76 Aligned_cols=84 Identities=14% Similarity=0.059 Sum_probs=59.3
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCce
Q 040821 90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGF 169 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I 169 (220)
....++|+.+|.....|-+--| -++.++|.+-++.+ +|.|+ -+ .+. ..- -|.-...|-+.|+++..
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~e~N-TL~I~-~q--~~~---~~~------~~~~~~~Ly~ev~P~~~ 239 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRP-PVGDEQVSPVLEGN-TLSIS-YQ--PRR---LRL------WNDITISLYKEVYPDIR 239 (368)
T ss_pred cceeeeeccccceeEEEEEecC-CCCccccceeecCC-cceee-ee--ccc---cch------HHHhhhhhhhhcCcchh
Confidence 4556778888888887776666 69999999999999 79999 32 211 111 13345677778888877
Q ss_pred EEEeccCCEEEEEEeccCC
Q 040821 170 KTAMDDAGVLTVTFTKLKP 188 (220)
Q Consensus 170 ~A~~~~dGVLtItlPK~e~ 188 (220)
.-..- --++.|++-|.+.
T Consensus 240 s~k~f-sK~~e~~l~KV~~ 257 (368)
T COG5091 240 SIKSF-SKRVEVHLRKVEM 257 (368)
T ss_pred hhhhc-chhheehhhhhhh
Confidence 66666 3688888888654
No 72
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=35.32 E-value=68 Score=22.63 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.4
Q ss_pred EEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 154 NFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 154 F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
..=+|.+|++++.++++..+. +.-|+|.++
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~-~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEIT-PKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEE-cCEEEEEEC
Confidence 345788999999999999999 788888886
No 73
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=32.26 E-value=22 Score=29.65 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=17.3
Q ss_pred CCcccCceEEEeccCCEEEEEEec
Q 040821 162 DGVNPNGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 162 e~Vd~e~I~A~~~~dGVLtItlPK 185 (220)
+++..+.--+.|. ||||||.|+-
T Consensus 67 e~~~~~~~Dv~y~-~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYA-DGVLTLKLGS 89 (156)
T ss_pred hhcCccccccccc-cceEEEEecC
Confidence 4444455567899 9999999985
No 74
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=32.00 E-value=78 Score=21.16 Aligned_cols=23 Identities=9% Similarity=0.159 Sum_probs=18.6
Q ss_pred CCCCCCeEEEEECCcEEEEEeceee
Q 040821 113 GTKMEDMMVGIEGRKSLMIGICDLS 137 (220)
Q Consensus 113 G~~kedI~V~v~~~~vL~Is~Ger~ 137 (220)
+++..+|+|.+.++ .++++ |.-.
T Consensus 13 ~~~~~~i~v~v~~g-~v~L~-G~v~ 35 (64)
T PF04972_consen 13 WLPDSNISVSVENG-VVTLS-GEVP 35 (64)
T ss_dssp CTT-TTEEEEEECT-EEEEE-EEES
T ss_pred ccCCCeEEEEEECC-EEEEE-eeCc
Confidence 56777899999999 69999 9754
No 75
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=31.90 E-value=1.5e+02 Score=20.63 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEec
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK 185 (220)
|+.++|.+.+. .+++. |.+. ..++.+|..+..+ ...+ |+-+++....
T Consensus 2 P~gV~v~~~~~-~i~v~-G~~g-----------------~l~~~~~~~v~v~---~~~~-~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKGN-IITVK-GPKG-----------------ELSRPIPPGVKVE---IKVE-DNKITVSVLS 48 (77)
T ss_dssp STTCEEEEETT-EEEEE-SSSS-----------------EEEEEETTTEEEE---EEEE-TTSEEEEEEE
T ss_pred CCcEEEEEeCc-EEEEE-CCCE-----------------eEEEECCCCeeEE---EEcC-CCceEEEECc
Confidence 57889999997 79999 8431 1467777664322 3366 7777776553
No 76
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=30.76 E-value=1.2e+02 Score=20.68 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=27.8
Q ss_pred EeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 99 SKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 99 E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
-..+.|.|++..| |+..-.-.|.+..+....|.
T Consensus 32 l~~G~~~v~v~~~-Gy~~~~~~v~v~~~~~~~v~ 64 (71)
T PF08308_consen 32 LPPGEHTVTVEKP-GYEPYTKTVTVKPGETTTVN 64 (71)
T ss_pred cCCccEEEEEEEC-CCeeEEEEEEECCCCEEEEE
Confidence 3478999999999 99998888998877667776
No 77
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=28.55 E-value=2.8e+02 Score=23.47 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
|++++|+++++ +++++ |.+ |+..+.|. .. .++...+ ||-|.|+..
T Consensus 13 P~~V~v~i~~~-~v~Vk-Gp~---------------G~L~~~~~--~~----~v~i~~~-~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGL-VVTVK-GPK---------------GELTRDFW--YP----GVTISVE-DGKVVIETE 57 (180)
T ss_pred CCCCEEEEECC-EEEEE-CCC---------------eEEEEEec--CC----cEEEEEE-CCEEEEEEC
Confidence 48889999988 79999 843 22333332 21 3455667 887777754
No 78
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=26.63 E-value=1.1e+02 Score=25.91 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCCeEEEEECCcEEEEEeceeec
Q 040821 106 FKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSK 138 (220)
Q Consensus 106 l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~ 138 (220)
=+.-||.|++++.|.=.+..+.+|+|+ +.+..
T Consensus 119 R~y~LP~~vdp~~V~S~LS~dGvLtI~-ap~~~ 150 (173)
T KOG3591|consen 119 RKYLLPEDVDPTSVTSTLSSDGVLTIE-APKPP 150 (173)
T ss_pred EEecCCCCCChhheEEeeCCCceEEEE-ccCCC
Confidence 345799999999999999876699999 85544
No 79
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=26.21 E-value=3.1e+02 Score=22.95 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
|++++|++.++ .|+|+ |.+ |...+.| |.. +....+ ++-|.|+..
T Consensus 11 P~~V~v~~~~~-~v~v~-Gp~---------------G~l~~~l--~~~-----i~i~~~-~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDGN-VVTVK-GPK---------------GELSRTL--HPG-----VTVKVE-DGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeCC-EEEEE-cCC---------------eEEEEEc--CCC-----eEEEEE-CCEEEEEec
Confidence 48899999888 79999 843 2333444 543 344567 787777754
No 80
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=25.15 E-value=58 Score=22.83 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=16.5
Q ss_pred CceEEEeccCCEEEEEEeccCCCCCCeeEEeccC
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS 200 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~ 200 (220)
..|+|-|+ ||||.--=|-. -.......|.|..
T Consensus 3 ~~I~aiYe-~GvlkPl~~~~-L~Eg~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYE-NGVLKPLEPVD-LPEGEEVKITIEE 34 (60)
T ss_dssp --EEEEEE-TTEEEECS------TTEEEEEEE--
T ss_pred ceEEEEEE-CCEEEECCCCC-CCCCCEEEEEEec
Confidence 45899999 99997543322 2223455666654
No 81
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=24.82 E-value=72 Score=24.66 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.2
Q ss_pred CceEEEeccCCEEEEEEec
Q 040821 167 NGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK 185 (220)
..+.+.+. +|||||+++.
T Consensus 28 ~d~D~e~~-~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQ-GGVLTLTFGN 45 (105)
T ss_pred cCEeeecc-CCEEEEEECC
Confidence 46778898 9999999983
No 82
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=24.11 E-value=1.3e+02 Score=22.66 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=25.9
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEE
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTF 183 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItl 183 (220)
.-.=+|+||+++....++..++ ..-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~-~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLG-SRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEE-cCEEEEEE
Confidence 3445788999999999999999 89899987
No 83
>PRK02913 hypothetical protein; Provisional
Probab=23.52 E-value=70 Score=26.69 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=34.5
Q ss_pred EeEEEEEEECCCCcccCceEE-EeccCCEEEEEEeccCCCCCCeeEEeccCCCcchhhHHHHH
Q 040821 151 DGKNFRSFILPDGVNPNGFKT-AMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLI 212 (220)
Q Consensus 151 ~g~F~R~~~LPe~Vd~e~I~A-~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~~~~~~ 212 (220)
.|=|.--.-+|. ++|++ ++++||+|.|.+.+ |+.-|.+++..-+.+.|-+.+
T Consensus 95 ~GFf~an~fi~Y----~~Ik~mNLSEDgiLVi~Le~------rrLli~v~~~dDLekiy~ff~ 147 (150)
T PRK02913 95 KGFFYANVFIEY----SRIKAMNLSEDGILVIDLEQ------RRLLIRVRNLDDLEKIYKFFI 147 (150)
T ss_pred cceEEeeeeeeh----HHhhhcccccCCEEEEEecC------cEEEEEccChhhHHHHHHHHh
Confidence 444555555543 34444 45559999999765 567788888877777776654
No 84
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=23.09 E-value=74 Score=24.70 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=14.2
Q ss_pred eEEEeccCCEEEEEEec
Q 040821 169 FKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK 185 (220)
+.+.+. +|||||+++.
T Consensus 29 ~D~e~~-~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERN-GGVLTLTFEN 44 (105)
T ss_pred eeeecc-CCEEEEEECC
Confidence 678889 9999999986
No 85
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=22.89 E-value=86 Score=24.27 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.3
Q ss_pred CceEEEeccCCEEEEEEec
Q 040821 167 NGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK 185 (220)
..+.+.+. +|||+|+++.
T Consensus 30 ~d~d~e~~-~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERS-GGVLTIEFPD 47 (109)
T ss_dssp STEEEEEE-TTEEEEEETT
T ss_pred CceEEEcc-CCEEEEEECC
Confidence 35789999 9999999965
No 86
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=22.69 E-value=4.6e+02 Score=21.94 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
|++++|.+.++ .++|+ |.+ |+..+.|. |. .++...+ +|-|+|+.+
T Consensus 7 P~~V~v~i~~~-~i~vk-Gp~---------------G~L~~~~~-~~-----~v~i~~~-~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGN-IVTVK-GPK---------------GEVTRELW-YP-----GIEISVE-DGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCC-EEEEE-CCC---------------eEEEEEEe-CC-----cEEEEEe-CCEEEEEeC
Confidence 47889999988 79999 843 22333332 33 3445567 888777754
No 87
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=22.26 E-value=76 Score=24.46 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=14.5
Q ss_pred ceEEEeccCCEEEEEEec
Q 040821 168 GFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK 185 (220)
.+.+.+. +|||+|+++.
T Consensus 26 d~D~e~~-~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERA-GGVLTLTFEN 42 (102)
T ss_pred CeeeecC-CCEEEEEECC
Confidence 3678889 9999999985
No 88
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=21.57 E-value=2.2e+02 Score=22.34 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=8.1
Q ss_pred eeEEEeCCEEEEEEE
Q 040821 95 VQWKSKKGVFHFKAH 109 (220)
Q Consensus 95 vDi~E~~d~~~l~~d 109 (220)
.++.++++.+.|...
T Consensus 87 ~~~~~~~~~L~I~~~ 101 (166)
T PF13349_consen 87 PEISVEGGTLTIKSK 101 (166)
T ss_pred EEEEEcCCEEEEEEe
Confidence 455555555555554
No 89
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=20.52 E-value=4.4e+02 Score=22.05 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=28.9
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
|++++|.+.++ .|+|+ |.+ |...+.| |..+ ....+ |+-|.|...
T Consensus 12 P~~V~v~~~~~-~v~vk-Gp~---------------G~l~~~~--~~~v-----~i~~~-~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTINGN-VVTVK-GPK---------------GELSRTL--NPDV-----TVKVE-DNEITVTRP 55 (178)
T ss_pred CCCCEEEEECC-EEEEE-CCC---------------EEEEEEc--CCCe-----EEEEE-CCEEEEEcC
Confidence 38899999988 69999 843 2344444 4433 44457 787777643
No 90
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=20.12 E-value=4.7e+02 Score=22.34 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
|++++|++.++ .++|+ |.+ |+..| .||.. ...|....+ ||-|.|+-+
T Consensus 13 P~~V~V~i~~~-~v~Vk-Gp~---------------G~L~~--~~~~~--~~~i~i~~~-~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSR-KVTVT-GKY---------------GELTR--SFRHL--PVDIKLSKD-GKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECC-EEEEE-CCC---------------ceEEE--EecCC--CceEEEEeC-CCEEEEEeC
Confidence 58999999998 79999 843 22333 33321 124555677 887777744
Done!