Query 040821
Match_columns 220
No_of_seqs 178 out of 1338
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gla_A Low molecular weight he 99.9 2.6E-25 9E-30 168.0 13.4 95 90-188 2-99 (100)
2 1gme_A Heat shock protein 16.9 99.9 1.1E-25 3.7E-30 183.1 11.5 107 90-199 41-150 (151)
3 4eld_A MJ16.5-P1, small heat s 99.9 3.6E-25 1.2E-29 181.2 11.7 100 93-196 57-160 (161)
4 2klr_A Alpha-crystallin B chai 99.9 1.4E-24 4.9E-29 181.1 10.0 106 93-207 64-170 (175)
5 4fei_A Heat shock protein-rela 99.9 1.3E-23 4.6E-28 160.0 11.4 91 90-189 4-97 (102)
6 3l1e_A Alpha-crystallin A chai 99.9 4.7E-23 1.6E-27 158.5 13.1 98 94-199 4-105 (106)
7 2wj5_A Heat shock protein beta 99.9 2.5E-23 8.6E-28 158.6 11.0 97 94-198 3-100 (101)
8 3aab_A Putative uncharacterize 99.9 1.5E-22 5.3E-27 158.7 11.0 92 91-190 23-119 (123)
9 3q9p_A Heat shock protein beta 99.9 5.1E-22 1.7E-26 147.0 9.7 84 97-187 2-85 (85)
10 2bol_A TSP36, small heat shock 99.8 4.7E-21 1.6E-25 172.8 13.1 105 90-205 96-204 (314)
11 2y1y_A Alpha-crystallin B chai 99.8 5.6E-21 1.9E-25 142.5 10.8 87 98-192 2-89 (90)
12 2bol_A TSP36, small heat shock 99.8 2.7E-19 9.1E-24 161.4 12.2 129 50-186 159-313 (314)
13 2xcm_C SGT1-like protein, cyto 98.9 9.5E-09 3.3E-13 75.2 9.0 82 92-189 2-83 (92)
14 1rl1_A Suppressor of G2 allele 98.8 1.3E-08 4.5E-13 77.7 8.9 83 91-189 8-90 (114)
15 2k8q_A Protein SHQ1; beta-sand 97.8 7.8E-05 2.7E-09 59.5 7.8 79 91-189 2-84 (134)
16 3eud_A Protein SHQ1; CS domain 97.7 0.00058 2E-08 53.1 11.9 81 89-189 14-98 (115)
17 1x5m_A Calcyclin-binding prote 97.4 0.0043 1.5E-07 48.0 12.6 82 92-189 20-105 (127)
18 1wh0_A Ubiquitin carboxyl-term 97.2 0.0043 1.5E-07 49.1 11.2 89 92-189 19-113 (134)
19 3qor_A Nuclear migration prote 97.1 0.0042 1.5E-07 47.9 10.4 80 91-188 15-97 (121)
20 1wgv_A KIAA1068 protein; CS do 97.1 0.0053 1.8E-07 47.4 10.8 84 91-189 18-103 (124)
21 2o30_A Nuclear movement protei 97.0 0.0081 2.8E-07 46.8 11.1 78 92-188 4-81 (131)
22 3igf_A ALL4481 protein; two-do 97.0 0.0012 4.1E-08 60.2 7.2 62 103-185 306-368 (374)
23 1wfi_A Nuclear distribution ge 96.8 0.015 5.1E-07 45.1 11.0 80 91-188 6-88 (131)
24 2rh0_A NUDC domain-containing 96.8 0.012 4.1E-07 47.5 10.3 79 91-188 12-91 (157)
25 1ejf_A Progesterone receptor P 96.6 0.013 4.5E-07 45.2 9.5 78 94-188 5-82 (125)
26 2cg9_X CO-chaperone protein SB 96.0 0.0036 1.2E-07 49.2 3.1 86 91-188 5-98 (134)
27 2kmw_A Uncharacterized protein 95.8 0.02 6.7E-07 45.9 6.5 80 91-189 3-83 (150)
28 4fei_A Heat shock protein-rela 74.2 6.2 0.00021 28.6 5.5 33 102-136 61-93 (102)
29 3q9p_A Heat shock protein beta 73.2 6.3 0.00022 27.7 5.1 33 153-187 8-40 (85)
30 3gla_A Low molecular weight he 72.8 5.9 0.0002 28.4 5.0 30 102-132 64-93 (100)
31 2wj5_A Heat shock protein beta 67.6 8.5 0.00029 28.0 4.9 31 104-136 56-87 (101)
32 2y1y_A Alpha-crystallin B chai 66.5 7.9 0.00027 27.4 4.4 33 153-187 7-39 (90)
33 3l1e_A Alpha-crystallin A chai 62.9 11 0.00039 27.5 4.9 33 104-138 57-90 (106)
34 4eld_A MJ16.5-P1, small heat s 62.8 12 0.00041 29.3 5.3 33 102-136 117-149 (161)
35 3aab_A Putative uncharacterize 59.1 19 0.00066 26.8 5.6 34 153-188 35-69 (123)
36 1gme_A Heat shock protein 16.9 57.7 15 0.00051 28.7 4.9 33 102-136 104-136 (151)
37 2klr_A Alpha-crystallin B chai 50.5 18 0.00063 29.1 4.5 31 104-136 118-149 (175)
38 3n8e_A Stress-70 protein, mito 38.9 70 0.0024 25.7 6.3 45 169-215 105-149 (182)
39 3dqg_A Heat shock 70 kDa prote 36.2 78 0.0027 24.5 6.0 44 169-214 85-128 (151)
40 2op6_A Heat shock 70 kDa prote 36.0 88 0.003 23.8 6.3 44 169-214 85-129 (152)
41 3h0x_A 78 kDa glucose-regulate 35.6 95 0.0032 24.0 6.4 44 169-214 85-129 (152)
42 1nkw_E 50S ribosomal protein L 28.8 1.3E+02 0.0046 25.0 6.5 50 107-186 35-84 (212)
43 1rl6_A Protein (ribosomal prot 28.8 1.1E+02 0.0039 24.6 5.9 44 117-185 12-55 (177)
44 2cql_A OK/SW-CL.103, 60S ribos 28.3 97 0.0033 22.6 5.0 17 117-135 21-37 (100)
45 1u00_A HSC66, chaperone protei 27.9 1.1E+02 0.0037 25.1 5.8 43 169-213 83-125 (227)
46 1ew4_A CYAY protein; friedreic 25.1 38 0.0013 25.2 2.3 17 168-185 29-45 (106)
47 1q5l_A Chaperone protein DNAK; 24.3 87 0.003 23.7 4.3 29 169-199 102-130 (135)
48 4e81_A Chaperone protein DNAK; 24.3 1.6E+02 0.0054 24.2 6.2 42 169-212 86-127 (219)
49 3oeq_A Frataxin homolog, mitoc 24.0 51 0.0017 25.4 2.8 16 169-185 49-64 (123)
50 3dob_A Heat shock 70 kDa prote 23.8 1.2E+02 0.0041 23.5 5.1 44 169-214 85-129 (152)
51 3j21_F 50S ribosomal protein L 22.7 1.5E+02 0.0051 24.1 5.6 49 106-183 9-57 (184)
52 2nwt_A UPF0165 protein AF_2212 21.0 57 0.0019 22.7 2.3 32 167-200 3-34 (69)
53 1vq8_E 50S ribosomal protein L 20.8 1.7E+02 0.0059 23.6 5.6 45 117-185 10-54 (178)
54 2o30_A Nuclear movement protei 20.1 1.1E+02 0.0038 22.8 4.1 31 153-184 15-45 (131)
No 1
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=99.93 E-value=2.6e-25 Score=168.00 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=85.3
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821 90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP 166 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~ 166 (220)
.+.|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |+++.+.+++...|++. +|.|.|+|.||.++|.
T Consensus 2 ~~~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~-~L~I~-g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~ 78 (100)
T 3gla_A 2 QWVPRVDIKEEVNHFVLYADLP-GIDPSQIEVQMDKG-ILSIR-GERKSESSTETERFSRIERRYGSFHRRFALPDSADA 78 (100)
T ss_dssp CSCCCEEEEECSSEEEEEEECT-TSCGGGCEEEEETT-EEEEE-EEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCT
T ss_pred CccCcEEEEECCCEEEEEEECC-CCCHHHEEEEEECC-EEEEE-EEEcCcCccCCccEEEEeecceEEEEEEECCCCcCh
Confidence 3689999999999999999999 99999999999998 79999 98876655555677765 8999999999999999
Q ss_pred CceEEEeccCCEEEEEEeccCC
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKP 188 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~ 188 (220)
++|+|+|+ ||+|+|++||.++
T Consensus 79 ~~i~A~~~-~GvL~I~~pK~~~ 99 (100)
T 3gla_A 79 DGITAAGR-NGVLEIRIPKRPA 99 (100)
T ss_dssp TSCEEEEE-TTEEEEEEEBC--
T ss_pred HHeEEEEe-CCEEEEEEecCCC
Confidence 99999999 9999999999864
No 2
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=99.93 E-value=1.1e-25 Score=183.15 Aligned_cols=107 Identities=29% Similarity=0.470 Sum_probs=94.3
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821 90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP 166 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~ 166 (220)
.+.|++||+|++++|+|.++|| |++++||+|++++++.|+|+ |+++.+.+++...|++. +|.|.|+|.||++||.
T Consensus 41 ~~~p~~di~e~~d~~~v~~dlP-Gv~kedI~V~v~~~~~L~I~-g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~ 118 (151)
T 1gme_A 41 FANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS-GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKV 118 (151)
T ss_dssp HGGGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEE-ECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCG
T ss_pred ccCCceEEEEcCCEEEEEEECC-CCChHHEEEEEecCCEEEEE-EEEccccccCCceEEEEeEeccEEEEEEECCCCccc
Confidence 4679999999999999999999 99999999999644379999 98776555555677765 8999999999999999
Q ss_pred CceEEEeccCCEEEEEEeccCCCCCCeeEEecc
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~ 199 (220)
++|+|+|+ ||||+|++||.++++++.++|+|+
T Consensus 119 ~~i~A~~~-nGvL~I~lPK~~~~~~~~~~I~I~ 150 (151)
T 1gme_A 119 EEVKAGLE-NGVLTVTVPKAEVKKPEVKAIQIS 150 (151)
T ss_dssp GGCEEEEE-TTEEEEEEECCCCCTTCCCCCCCC
T ss_pred cceEEEEE-CCEEEEEEEccCcCCCCCeEeeeC
Confidence 99999999 999999999998877777888875
No 3
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=99.92 E-value=3.6e-25 Score=181.22 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=87.4
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE----EeEEEEEEECCCCcccCc
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV----DGKNFRSFILPDGVNPNG 168 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~----~g~F~R~~~LPe~Vd~e~ 168 (220)
+++||+|++++|+|.++|| |++++||+|+++++ +|+|+ |+++.+.+.+..+|++. +|.|.|+|.||.+||.++
T Consensus 57 ~pvdi~e~~~~~~v~~dlP-G~~~edi~V~~~~~-~L~I~-g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~ 133 (161)
T 4eld_A 57 MPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGD-TLEIR-AKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEEN 133 (161)
T ss_dssp CCEEEEECSSEEEEEEECT-TCCGGGEEEEEETT-EEEEE-EECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGG
T ss_pred cceeEEEeCCEEEEEEECC-CCChHhEEEEEECC-EEEEE-EEEcccccCCCceEEEEEeeccccEEEEEECCCCccccc
Confidence 4499999999999999999 99999999999999 79999 98766444445566654 489999999999999999
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEE
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPI 196 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I 196 (220)
|+|+|+ ||||+|++||.+.+++++|.|
T Consensus 134 i~A~~~-nGvL~I~lpK~~~~~~r~I~I 160 (161)
T 4eld_A 134 ASAKFE-NGVLSVILPKAESSIKKGINI 160 (161)
T ss_dssp CEEEEE-TTEEEEEEEBCGGGSCCCCCC
T ss_pred EEEEEE-CCEEEEEEEcCCCCCCcEeec
Confidence 999999 999999999998777666554
No 4
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=99.91 E-value=1.4e-24 Score=181.08 Aligned_cols=106 Identities=17% Similarity=0.211 Sum_probs=71.8
Q ss_pred ceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEE
Q 040821 93 VSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTA 172 (220)
Q Consensus 93 p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~ 172 (220)
..+||+|++++|+|.+||| ||+++||+|+++++ +|+|+ |+++.+. ++..|+ +++|.|+|.||++||.++|+|+
T Consensus 64 ~~~dv~e~~d~~~v~~dlP-G~~~edI~V~v~~~-~L~I~-g~~~~~~--~~~~~~--~reF~R~~~LP~~Vd~~~i~A~ 136 (175)
T 2klr_A 64 GLSEMRLEKDRFSVNLDVK-HFSPEELKVKVLGD-VIEVH-GKHEERQ--DEHGFI--SREFHRKYRIPADVDPLTITSS 136 (175)
T ss_dssp -----CCCCSEEEEEECCS-SCCGGGEEEEEETT-EEEEE-EEEEEEE--ETTEEE--EEEEEEEEECTTTCCTTTCEEE
T ss_pred CceEEEEcCCeEEEEEECC-CCChHHEEEEEECC-EEEEE-EEEcccc--cCCceE--EEEEEEEEECCCCcChhHeEEE
Confidence 3479999999999999999 99999999999999 79999 9765432 223444 3579999999999999999999
Q ss_pred e-ccCCEEEEEEeccCCCCCCeeEEeccCCCcchhh
Q 040821 173 M-DDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHA 207 (220)
Q Consensus 173 ~-~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~ 207 (220)
| + ||||+|++||.+.++ ..++|+|+.++.++.+
T Consensus 137 ~s~-dGvL~I~lPK~~~~~-~~r~I~I~~~~~~~~~ 170 (175)
T 2klr_A 137 LSS-DGVLTVNGPRKQVSG-PERTIPITREEKPAVT 170 (175)
T ss_dssp ECT-TSCEEEEEECC---------------------
T ss_pred EcC-CCEEEEEEECCCCCC-CCeEEEEecCCccccc
Confidence 9 8 999999999987554 3467777777666543
No 5
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=99.90 E-value=1.3e-23 Score=159.99 Aligned_cols=91 Identities=23% Similarity=0.441 Sum_probs=80.9
Q ss_pred CCCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEE---EEeEEEEEEECCCCccc
Q 040821 90 LEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMC---VDGKNFRSFILPDGVNP 166 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r---~~g~F~R~~~LPe~Vd~ 166 (220)
.+.|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |+++.+ ..|++ .+|.|.|+|.||.+||.
T Consensus 4 ~~~P~~di~e~~~~~~v~~~lP-G~~~edi~v~~~~~-~L~I~-g~~~~~-----~~~~~~er~~g~f~R~~~LP~~vd~ 75 (102)
T 4fei_A 4 PWTPAADWRDAGTHLDLLLDVP-GVDAGTLALAEDGG-QLTVS-GERPGT-----EHLLRSERPSGRFVRELAFPEPVRP 75 (102)
T ss_dssp ECCCCEEEEEETTEEEEEEECT-TCCGGGCEEEEETT-EEEEE-EEECCC-----SSCSSCCSEEEEEEEEEECSSCBCT
T ss_pred cccCcEEEEEcCCEEEEEEECC-CCchHhEEEEEECC-EEEEE-EEEecC-----CCEEEEEEeccEEEEEEECCCCcch
Confidence 4689999999999999999999 99999999999999 79999 987431 23332 38999999999999999
Q ss_pred CceEEEeccCCEEEEEEeccCCC
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~~ 189 (220)
++|+|+|+ ||||+|++||.++.
T Consensus 76 ~~i~A~~~-~GvL~I~lpK~~~~ 97 (102)
T 4fei_A 76 ASGVASLA-GGVLTVRFEKLRPT 97 (102)
T ss_dssp TCCEEEEE-TTEEEEEEEBSSCC
T ss_pred hHcEEEEE-CCEEEEEEEccCcc
Confidence 99999999 99999999998754
No 6
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=99.90 E-value=4.7e-23 Score=158.48 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=82.8
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM 173 (220)
Q Consensus 94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~ 173 (220)
.+||+|+++.|.|.++|| ||+++||+|+++++ .|+|+ |++.... ....|+ +++|.|+|.||++||.++|+|+|
T Consensus 4 ~~~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~--~~~~~~--~~eF~R~~~LP~~vd~~~i~A~~ 76 (106)
T 3l1e_A 4 ISEVRSDRDKFVIFLDVK-HFSPEDLTVKVQED-FVEIH-GKHNERQ--DDHGYI--SREFHRRYRLPSNVDQSALSCSL 76 (106)
T ss_dssp SEEEEECSSEEEEEEECT-TSCGGGEEEEEETT-EEEEE-EEEEEEE--TTTEEE--EEEEEEEEECCTTBCTTSCEEEE
T ss_pred ceEEEEcCCEEEEEEECC-CCChHHEEEEEECC-EEEEE-EEEcccc--CCCCEE--EEEEEEEEECCCCcChhHcEEEE
Confidence 479999999999999999 99999999999998 69999 9764332 223444 45799999999999999999999
Q ss_pred -ccCCEEEEEEeccCCCC---CCeeEEecc
Q 040821 174 -DDAGVLTVTFTKLKPEK---KKLRPIAKK 199 (220)
Q Consensus 174 -~~dGVLtItlPK~e~~k---~r~i~I~I~ 199 (220)
+ ||||+|++||.+++. ++.+.|+|+
T Consensus 77 s~-~GvL~I~~PK~~~~~~~~~~~r~I~I~ 105 (106)
T 3l1e_A 77 SA-DGMLTFSGPKIPSGVDAGHSERAIPVS 105 (106)
T ss_dssp CT-TSEEEEEEEBCCCCTTTTSSSCCCCCC
T ss_pred CC-CCEEEEEEEccCcccccCCCCeEeeec
Confidence 8 999999999998763 356667664
No 7
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=99.90 E-value=2.5e-23 Score=158.63 Aligned_cols=97 Identities=21% Similarity=0.320 Sum_probs=81.9
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM 173 (220)
Q Consensus 94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~ 173 (220)
.+||+|+++.|.|.++|| ||+++||+|+++++ .|+|+ |+++.+. .+..|++ ++|.|+|.||++||.++|+|+|
T Consensus 3 ~vdi~e~~~~~~v~~dlP-G~~~edI~V~v~~~-~L~I~-g~~~~~~--~~~~~~~--~eF~R~~~LP~~vd~~~i~A~~ 75 (101)
T 2wj5_A 3 MAQVPTDPGYFSVLLDVK-HFSPEEISVKVVGD-HVEVH-ARHEERP--DEHGFIA--REFHRRYRLPPGVDPAAVTSAL 75 (101)
T ss_dssp CCCCCCCSSCEEEEEECT-TSCGGGEEEEEETT-EEEEE-EEEEECS--STTCCEE--EEEEEEEECCTTBCTTCCEEEE
T ss_pred cEEEEEeCCEEEEEEECC-CCcHHHeEEEEECC-EEEEE-EEEeccc--CCCCEEE--EEEEEEEECCCCcChhHCEEEE
Confidence 479999999999999999 99999999999999 69999 9875432 2234443 4699999999999999999999
Q ss_pred -ccCCEEEEEEeccCCCCCCeeEEec
Q 040821 174 -DDAGVLTVTFTKLKPEKKKLRPIAK 198 (220)
Q Consensus 174 -~~dGVLtItlPK~e~~k~r~i~I~I 198 (220)
+ ||+|+|++||.++++++.++|.+
T Consensus 76 s~-nGvL~I~lPK~~~~~~~~~~i~~ 100 (101)
T 2wj5_A 76 SP-EGVLSIQATPASAQASLPSPPAA 100 (101)
T ss_dssp CT-TSEEEEEECBCCCCCSSCC----
T ss_pred CC-CCEEEEEEECCCcCCCCCCcccc
Confidence 8 99999999999988888877754
No 8
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=99.88 E-value=1.5e-22 Score=158.69 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=81.4
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEEC-CcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCccc
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEG-RKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNP 166 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~-~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~ 166 (220)
+.|++||+|+++.|.|.++|| |++++||+|++.+ + .|+|+ |+++.+. +..|++. + .|.|+|.||.++|.
T Consensus 23 ~~P~~di~e~~~~~~v~~~lP-G~~~edi~V~v~~~~-~L~I~-g~~~~~~---~~~~~~~Er~~-~f~R~~~LP~~vd~ 95 (123)
T 3aab_A 23 VYPPVDMYEEGGYLVVVADLA-GFNKEKIKARVSGQN-ELIIE-AEREITE---PGVKYLTQRPK-YVRKVIRLPYNVAK 95 (123)
T ss_dssp HCSCEEEEEETTEEEEEEECC-SCCGGGCEEEEETTT-EEEEE-EECCCCC---CSCEEEECSCS-EEEEEEECSSEECT
T ss_pred CCCcEEEEEcCCEEEEEEECC-CCCHHHEEEEEeCCC-EEEEE-EEEeccC---CCeEEEEEEeE-EEEEEEECCCCcCc
Confidence 358899999999999999999 9999999999999 8 79999 9765432 4456655 6 99999999999999
Q ss_pred Cce-EEEeccCCEEEEEEeccCCCC
Q 040821 167 NGF-KTAMDDAGVLTVTFTKLKPEK 190 (220)
Q Consensus 167 e~I-~A~~~~dGVLtItlPK~e~~k 190 (220)
++| +|+|+ ||||+|++||.+..+
T Consensus 96 ~~i~~A~~~-~GvL~I~lPK~~~~~ 119 (123)
T 3aab_A 96 DAEISGKYE-NGVLTIRIPIAGTSV 119 (123)
T ss_dssp TCCCEEEEE-TTEEEEEEEGGGEEC
T ss_pred chhCeeEEc-CCEEEEEEEcCCCCc
Confidence 999 99999 999999999987543
No 9
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=99.87 E-value=5.1e-22 Score=147.01 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=69.7
Q ss_pred EEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccC
Q 040821 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDA 176 (220)
Q Consensus 97 i~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~d 176 (220)
+.|+++.|.|.++|| ||+++||+|+++++ +|+|+ |+++.+.++ ..+ .+|+|.|+|.||++||+++|+|+|..|
T Consensus 2 ~~E~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~~~--~~~--~~~~F~R~~~LP~~vd~~~i~A~~~~~ 74 (85)
T 3q9p_A 2 GSHTADRWRVSLDVN-HFAPDELTVKTKDG-VVEIT-GKHAARQDE--HGY--ISRCFTRKYTLPPGVDPTQVSSSLSPE 74 (85)
T ss_dssp -CCCCCEEEEEEECT-TTCCSEEEEEEETT-EEEEE-EEEC---------C--CCEEEEEEEECCTTCCGGGCEEEECTT
T ss_pred ccCcCCEEEEEEECC-CCChHHEEEEEECC-EEEEE-EEEccccCC--CCE--EEEEEEEEEECCCCcChHHcEEEECCC
Confidence 468999999999999 99999999999999 79999 987543221 122 268999999999999999999999559
Q ss_pred CEEEEEEeccC
Q 040821 177 GVLTVTFTKLK 187 (220)
Q Consensus 177 GVLtItlPK~e 187 (220)
|||+|++||.+
T Consensus 75 GvL~I~lPK~k 85 (85)
T 3q9p_A 75 GTLTVEAPMPK 85 (85)
T ss_dssp SEEEEEEECCC
T ss_pred CEEEEEEEcCC
Confidence 99999999963
No 10
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.85 E-value=4.7e-21 Score=172.81 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=87.6
Q ss_pred CCCceeeEEEeCC----EEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcc
Q 040821 90 LEKVSVQWKSKKG----VFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVN 165 (220)
Q Consensus 90 ~~~p~vDi~E~~d----~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd 165 (220)
.+.|++||+|+++ +|.|.++|| ||+++||+|+++++ +|+|+ |+++.+.+ .. +.+|+|.|+|.||++||
T Consensus 96 ~~~p~vDi~E~~~dgk~~~~v~~dlP-G~~~edI~V~v~~~-~L~I~-ge~~~~~e--~~---r~~g~F~R~~~LP~~Vd 167 (314)
T 2bol_A 96 ELDFLKDAYEVGKDGRLHFKVYFNVK-NFKAEEITIKADKN-KLVVR-AQKSVACG--DA---AMSESVGRSIPLPPSVD 167 (314)
T ss_dssp TTGGGGGCEEECTTSSEEEEEEEECT-TCCTTTEEEEEETT-EEEEE-ECCBSSTT--CC---CBCCCEEEEEECCTTBC
T ss_pred cCCCccceEEcCCCCceEEEEEEECC-CCchHHeEEEEECC-EEEEE-EEEeccCC--CC---EEEEEEEEEEECCCCcc
Confidence 3679999999999 999999999 99999999999999 79999 98754322 11 44799999999999999
Q ss_pred cCceEEEeccCCEEEEEEeccCCCCCCeeEEeccCCCcch
Q 040821 166 PNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLA 205 (220)
Q Consensus 166 ~e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~ 205 (220)
.++|+|+|++||||+|++||.+++. +. |+|+..+.++
T Consensus 168 ~e~i~A~~~~nGVL~I~lPK~~~~~-~~--I~it~~~ql~ 204 (314)
T 2bol_A 168 RNHIQATITTDDVLVIEAPVNEPNY-KA--IKLSPEKGLA 204 (314)
T ss_dssp GGGCEEEECSSSEEEEEEEBSSCCT-TT--EEEETTTEEE
T ss_pred ccccEEEEeCCCEEEEEEeccCccc-ce--eecccCCccC
Confidence 9999999988999999999987653 33 4454444444
No 11
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=99.85 E-value=5.6e-21 Score=142.52 Aligned_cols=87 Identities=18% Similarity=0.292 Sum_probs=68.2
Q ss_pred EEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe-ccC
Q 040821 98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM-DDA 176 (220)
Q Consensus 98 ~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~-~~d 176 (220)
.++++.|.|.++|| ||+++||+|++.++ .|+|+ |++..+. .+..|++ +.|.|+|.||++||.++|+|+| + |
T Consensus 2 k~~~~~~~v~~dlP-G~~~edi~V~v~~~-~L~I~-g~~~~~~--~~~~~~~--~ef~R~~~LP~~vd~~~i~A~~~~-~ 73 (90)
T 2y1y_A 2 AMEKDRFSVNLDVK-HFSPEELKVKVLGD-VIEVH-GKHEERQ--DEHGFIS--REFHRKYRIPADVDPLTITSSMSS-D 73 (90)
T ss_dssp ----CCEEEEEECT-TSCGGGEEEEEETT-EEEEE-EEEEEEE--CSSSEEE--EEEEEEEECCTTBCGGGCEEEECT-T
T ss_pred CcCCCEEEEEEECC-CCcHHHeEEEEECC-EEEEE-EEEeccc--CCCCEEE--EEEEEEEECCCCcChhHcEEEECC-C
Confidence 46889999999999 99999999999998 69999 9875432 2334553 4699999999999999999999 8 9
Q ss_pred CEEEEEEeccCCCCCC
Q 040821 177 GVLTVTFTKLKPEKKK 192 (220)
Q Consensus 177 GVLtItlPK~e~~k~r 192 (220)
|||+|++||.++++|+
T Consensus 74 GvL~I~~pK~~~~~p~ 89 (90)
T 2y1y_A 74 GVLTVNGPRKQVSGPE 89 (90)
T ss_dssp SEEEEEECBC------
T ss_pred CEEEEEEEcCCCCCCC
Confidence 9999999999877665
No 12
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=99.80 E-value=2.7e-19 Score=161.36 Aligned_cols=129 Identities=17% Similarity=0.276 Sum_probs=97.0
Q ss_pred hccCCCCCCccccccccCCCcchhhhccccCCCCC------------CCCCCC-------CCceeeEEEeC---CEEEEE
Q 040821 50 EFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHS------------ETPSDL-------EKVSVQWKSKK---GVFHFK 107 (220)
Q Consensus 50 ~f~~P~~~~~~~f~~~id~~g~l~~~fd~f~~~~~------------~~~~~~-------~~p~vDi~E~~---d~~~l~ 107 (220)
.|.+|..++++...+.+..+|.|........+... ...+.. -....+|.+++ +.|+|.
T Consensus 159 ~~~LP~~Vd~e~i~A~~~~nGVL~I~lPK~~~~~~~I~it~~~ql~Iqp~s~~q~~l~vkg~~~~~i~e~~~~~~~~~v~ 238 (314)
T 2bol_A 159 SIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLE 238 (314)
T ss_dssp EEECCTTBCGGGCEEEECSSSEEEEEEEBSSCCTTTEEEETTTEEEECCBCCSSCCSCCCSCCEEEEEECTTSCEEEEEE
T ss_pred EEECCCCccccccEEEEeCCCEEEEEEeccCcccceeecccCCccCcCCCccccceeecccCCCCcEEEecCCCcEEEEE
Confidence 67899999999999999977999876543222110 000111 13456777765 578999
Q ss_pred EEc-CCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccCceEEEeccCCEEEEEE
Q 040821 108 AHL-PAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTF 183 (220)
Q Consensus 108 ~dL-P~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItl 183 (220)
++| | |++|+||+|++++| +|+|+ |+++.+.+ .+++. +|+|.|+|.||++||.++|+|+|+ ||||+|++
T Consensus 239 ~~ldP-G~~~edi~V~v~~~-~LtI~-ge~~~~~~----~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~-dGvL~i~~ 310 (314)
T 2bol_A 239 LKVDP-HFAPKDVKVWAKGN-KVYVH-GVTGKEEK----TENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMVVEA 310 (314)
T ss_dssp EECCT-TCCGGGEEEEESSS-EEEEE-EEEC----------------CEEEEEEEECSSEECGGGCEEEEE-TTEEEEEE
T ss_pred EEcCC-CCChHHeEEEEECC-EEEEE-EEEeccCC----ceEEEEEeeeEEEEEEECCCCcChHHeEEEEe-CCEEEEEE
Confidence 999 9 99999999999998 79999 98765322 33433 999999999999999999999999 99999999
Q ss_pred ecc
Q 040821 184 TKL 186 (220)
Q Consensus 184 PK~ 186 (220)
||.
T Consensus 311 Pk~ 313 (314)
T 2bol_A 311 PLF 313 (314)
T ss_dssp EEE
T ss_pred ecC
Confidence 996
No 13
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Probab=98.88 E-value=9.5e-09 Score=75.24 Aligned_cols=82 Identities=10% Similarity=0.087 Sum_probs=71.2
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.|+++|+++.+.+.|.+.+| |+.++++.|++.++ .|+|+ +... .+ ..|...+.|+..|++++.++
T Consensus 2 ~~~~~W~Qt~~~V~v~i~~~-~v~~~~v~v~~~~~-~l~v~-~~~~-----~~-------~~y~~~~~L~~~I~~~~s~~ 66 (92)
T 2xcm_C 2 KYRHEYYQKPEEVVVTVFAK-GIPKQNVNIDFGEQ-ILSVV-IEVP-----GE-------DAYYLQPRLFGKIIPDKCKY 66 (92)
T ss_dssp CSEEEEEEETTEEEEEEECC-SCCGGGEEEEECSS-BEEEE-ECCT-----TS-------CCEEECCBBSSCBCGGGCEE
T ss_pred CccccEEeCCCEEEEEEEEC-CCChHHeEEEEECC-EEEEE-EEcC-----CC-------cEEEEeeEcCCccCchhEEE
Confidence 57899999999999999999 99999999999999 59999 7321 11 13667899999999999999
Q ss_pred EeccCCEEEEEEeccCCC
Q 040821 172 AMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e~~ 189 (220)
++. +|.|+|+|+|.++.
T Consensus 67 ~~~-~~~l~i~L~K~~~~ 83 (92)
T 2xcm_C 67 EVL-STKIEICLAKADII 83 (92)
T ss_dssp EEC-SSCEEEEEEBSSSC
T ss_pred EEE-CCEEEEEEEcCCCC
Confidence 999 99999999998754
No 14
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=98.84 E-value=1.3e-08 Score=77.70 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~ 170 (220)
..|+++|+++.+.+.|.+.+| |+++++++|++.++ .|+|+ +... .+. .|...+.|+..|++++.+
T Consensus 8 ~~~~~~W~Qt~~~V~v~i~l~-~v~~~~v~v~~~~~-~l~v~-~~~~-----~~~-------~y~~~~~L~~~I~~e~s~ 72 (114)
T 1rl1_A 8 SKIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEK-ELSAL-VKLP-----SGE-------DYNLKLELLHPIIPEQST 72 (114)
T ss_dssp CCCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSS-CEEEE-EECT-----TSS-------EEEEEECBSSCCCGGGEE
T ss_pred CCCCccEEeCCCEEEEEEEeC-CCCHHHCEEEEEcC-EEEEE-EEeC-----CCc-------EEEEEeeCCCcCCccccE
Confidence 457799999999999999999 99999999999999 49999 7321 121 466889999999999999
Q ss_pred EEeccCCEEEEEEeccCCC
Q 040821 171 TAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 171 A~~~~dGVLtItlPK~e~~ 189 (220)
+++. +|.|+|+|+|.++.
T Consensus 73 ~~~~-~~~l~i~L~K~~~~ 90 (114)
T 1rl1_A 73 FKVL-STKIEIKLKKPEAV 90 (114)
T ss_dssp EEEC-SSSEEEEEECSSCC
T ss_pred EEEE-CCEEEEEEEcCCCC
Confidence 9999 99999999998754
No 15
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=7.8e-05 Score=59.52 Aligned_cols=79 Identities=9% Similarity=0.174 Sum_probs=66.9
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCC--CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCc-ccC
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTK--MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGV-NPN 167 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~--kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~V-d~e 167 (220)
..|...+..+++..+|.+.+| ..+ ..++++.+++. .+... .. .|.-++.||..| +.+
T Consensus 2 iTP~F~itQd~e~viV~Ik~P-~~~~~~sdiei~v~~~-~F~F~-~~-----------------PYyLRL~LP~~V~e~~ 61 (134)
T 2k8q_A 2 ITPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIIIQEN-MIIFH-LS-----------------PYYLRLRFPHELIDDE 61 (134)
T ss_dssp CCSEEEEEECSSEEEEEEECC-SSCCCSSSCCCEECSS-SEEEC-SS-----------------SSCEEECCSSCEECCS
T ss_pred cCceEEEEECCCEEEEEEEcC-ccccCccccEEEEeCC-EEEEe-cC-----------------CeEEEecCCCeeecCC
Confidence 368899999999999999999 999 89999999988 58777 41 133579999998 888
Q ss_pred ceEEEec-cCCEEEEEEeccCCC
Q 040821 168 GFKTAMD-DAGVLTVTFTKLKPE 189 (220)
Q Consensus 168 ~I~A~~~-~dGVLtItlPK~e~~ 189 (220)
.-+|+|. +.|.|+|++||..+.
T Consensus 62 ~~kA~YD~d~~~~~VtLpK~~~G 84 (134)
T 2k8q_A 62 RSTAQYDSKDECINVKVAKLNKN 84 (134)
T ss_dssp SCEEEEETTTTEEEEEEEESSTT
T ss_pred CcceeEeccCCEEEEEEeCCCCC
Confidence 8999996 389999999997543
No 16
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00058 Score=53.11 Aligned_cols=81 Identities=9% Similarity=0.183 Sum_probs=67.3
Q ss_pred CCCCceeeEEEeCCEEEEEEEcCCCCC--CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCc-c
Q 040821 89 DLEKVSVQWKSKKGVFHFKAHLPAGTK--MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGV-N 165 (220)
Q Consensus 89 ~~~~p~vDi~E~~d~~~l~~dLP~G~~--kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~V-d 165 (220)
.+..|...+.++++...|.+-+| -++ ..++++.+++. .+... .. .|.-++.||..+ +
T Consensus 14 ~~iTP~F~itQDdefv~I~I~~p-~ir~~a~~~ei~vd~~-~F~F~-~~-----------------PYyLRL~lP~~vve 73 (115)
T 3eud_A 14 KMITPRFSITQDEEFIFLKIFIS-NIRFSAVGLEIIIQEN-MIIFH-LS-----------------PYYLRLRFPHELID 73 (115)
T ss_dssp CCBCCCEEEEECSSEEEEEEECC-SCCCCSSSCEEEEETT-EEEEE-ET-----------------TEEEEEECSSCEEC
T ss_pred CEeCCcEEEEECCCEEEEEEEcC-ceecccCccEEEEeCC-EEEEe-cC-----------------CeEEEEecCcceec
Confidence 35678999999999999999999 866 78999999988 57777 41 245689999997 6
Q ss_pred cCceEEEec-cCCEEEEEEeccCCC
Q 040821 166 PNGFKTAMD-DAGVLTVTFTKLKPE 189 (220)
Q Consensus 166 ~e~I~A~~~-~dGVLtItlPK~e~~ 189 (220)
.+.-+|+|. ++|.++|++||..+.
T Consensus 74 d~~~~A~YD~d~g~~~v~lpK~~~G 98 (115)
T 3eud_A 74 DERSTAQYDSKDECINVKVAKLNKN 98 (115)
T ss_dssp STTCEEEEETTTTEEEEEEEESSTT
T ss_pred CCCcceEEeCCCcEEEEEEcCCcCC
Confidence 677889995 489999999998654
No 17
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.0043 Score=48.04 Aligned_cols=82 Identities=12% Similarity=0.124 Sum_probs=67.3
Q ss_pred CceeeEEEeCCEEEEEEEcCCCC---CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEE-CCCCcccC
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGT---KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFI-LPDGVNPN 167 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~---~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~-LPe~Vd~e 167 (220)
.++++|+++.+...|.+.+| |+ .++++.|++..+ .|.+. ... . .+.. |.-.+. |-..|+++
T Consensus 20 ~~~y~W~Qt~~~V~i~I~l~-~~~~~~~~~v~V~~~~~-~l~v~-~~~-~----~~~~-------y~~~~~~L~~~I~~e 84 (127)
T 1x5m_A 20 ISNYGWDQSDKFVKIYITLT-GVHQVPTENVQVHFTER-SFDLL-VKN-L----NGKS-------YSMIVNNLLKPISVE 84 (127)
T ss_dssp CCSCEEEEETTEEEEEEECT-TTTTSCTTSEEEEECSS-EEEEE-ECS-C----SSSC-------EEEEEECBSSCCCTT
T ss_pred ccEEEEEcCCCEEEEEEEeC-CCCcCCccccEEEEEcC-EEEEE-EEc-C----CCCc-------EEEEhHHhcCccCcc
Confidence 45789999999999999999 99 899999999998 59999 521 1 1122 445675 88999999
Q ss_pred ceEEEeccCCEEEEEEeccCCC
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~ 189 (220)
+-+.+.. .+-++|+|-|.++.
T Consensus 85 ~S~~~v~-~~kVei~L~K~~~~ 105 (127)
T 1x5m_A 85 GSSKKVK-TDTVLILCRKKVEN 105 (127)
T ss_dssp TCEEEEE-TTEEEEEEECSSSS
T ss_pred cCEEEEe-CCEEEEEEEECCCC
Confidence 9888998 89999999998753
No 18
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=97.20 E-value=0.0043 Score=49.07 Aligned_cols=89 Identities=9% Similarity=0.011 Sum_probs=69.1
Q ss_pred CceeeEEEe-CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccc-----cCCCCeEEEEEeEEEEEEECCCCcc
Q 040821 92 KVSVQWKSK-KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTE-----EGDTSTLMCVDGKNFRSFILPDGVN 165 (220)
Q Consensus 92 ~p~vDi~E~-~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~-----e~~~~~~~r~~g~F~R~~~LPe~Vd 165 (220)
.++++|+++ .+...|.+.++ ++.+++++|++.++ .|.+. ....... ......+ .|.-.+.|-..|+
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k-~v~~~~v~V~f~~~-~l~v~-~~~~~~~~l~~~~a~g~~~-----~y~~~~~L~~~I~ 90 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQ-DFTLI-FQTRDGNFLRLHPGCGPHT-----TFRWQVKLRNLIE 90 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSS-EEEEE-ECBCCHHHHHHSTTCCTTS-----CEEEEEEBSSCEE
T ss_pred CCCeEEEcCCCCEEEEEEEeC-CCCcccCEEEEECC-EEEEE-EEcCCCcccccccccCcce-----eEEEeccccccCC
Confidence 578999999 99999999999 99999999999998 59999 5221100 0000000 3556678999999
Q ss_pred cCceEEEeccCCEEEEEEeccCCC
Q 040821 166 PNGFKTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 166 ~e~I~A~~~~dGVLtItlPK~e~~ 189 (220)
+++-+.++. ++-+.|+|.|++..
T Consensus 91 pe~S~~~v~-~~kIeI~L~K~e~~ 113 (134)
T 1wh0_A 91 PEQCTFCFT-ASRIDICLRKRQSQ 113 (134)
T ss_dssp EEEEEEEEC-SSEEEEEEEESSSC
T ss_pred chhCEEEEe-CCEEEEEEEECCCC
Confidence 999888999 89999999998654
No 19
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=97.14 E-value=0.0042 Score=47.87 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=65.2
Q ss_pred CCceeeEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCc
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNG 168 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~ 168 (220)
..|.+.|.++.+...|.+.||.| ++++|+.|++..++ |.|. . +. ..+ .-...|...|+++.
T Consensus 15 ~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~-l~v~-~-kg-------~~~-------~~~g~L~~~I~~de 77 (121)
T 3qor_A 15 DLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRH-LRVG-L-KG-------QPA-------IIDGELYNEVKVEE 77 (121)
T ss_dssp BCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTE-EEEE-E-TT-------SCC-------SEEEEBSSCBCGGG
T ss_pred cCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCE-EEEE-E-cC-------cce-------EEeccccccccccc
Confidence 46789999999999999999956 79999999999994 9888 4 11 111 12457889999999
Q ss_pred eEEEeccCC-EEEEEEeccCC
Q 040821 169 FKTAMDDAG-VLTVTFTKLKP 188 (220)
Q Consensus 169 I~A~~~~dG-VLtItlPK~e~ 188 (220)
-.-.++ +| .|.|+|.|.+.
T Consensus 78 S~w~i~-~~~~i~i~L~K~~~ 97 (121)
T 3qor_A 78 SSWLIA-DGAVVTVHLEKINK 97 (121)
T ss_dssp CEEEEE-TTTEEEEEEEBSSS
T ss_pred cEEEEc-CCCEEEEEEEECCC
Confidence 889999 87 99999999865
No 20
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=97.13 E-value=0.0053 Score=47.36 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=66.9
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCce
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGF 169 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I 169 (220)
..|.+.|+++.+...|.+.||.|+ +++|+.|++..+ .|.|. ... . .+..+ .-...|...|+++.-
T Consensus 18 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~-~l~v~-~~~-~----~~~~~-------~~~~~L~~~I~~e~S 83 (124)
T 1wgv_A 18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSS-SIRVA-MLE-E----NGERV-------LMEGKLTHKINTESS 83 (124)
T ss_dssp CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSS-EEEEE-EEC-S----SSEEE-------EEEEEBSSCBCTTTC
T ss_pred cCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcC-EEEEE-EEc-c----CCCce-------EEcccccCcCCCcCC
Confidence 457899999999999999999777 899999999999 49998 521 0 11111 235678999999998
Q ss_pred EEEeccCCE-EEEEEeccCCC
Q 040821 170 KTAMDDAGV-LTVTFTKLKPE 189 (220)
Q Consensus 170 ~A~~~~dGV-LtItlPK~e~~ 189 (220)
.-.++ +|- |.|+|.|.+..
T Consensus 84 ~w~i~-~~k~v~i~L~K~~~~ 103 (124)
T 1wgv_A 84 LWSLE-PGKCVLVNLSKVGEY 103 (124)
T ss_dssp EEEEC-TTSEEEEEECBSSSC
T ss_pred EEEEe-CCCEEEEEEEECCCC
Confidence 89998 774 99999998653
No 21
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=97.02 E-value=0.0081 Score=46.78 Aligned_cols=78 Identities=10% Similarity=0.191 Sum_probs=61.9
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.|.+.|+++.+...|.+.||.|++++++.|.+..+ .|.|. .. +..+ -...|...|+++.-.-
T Consensus 4 ~~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~-~l~v~-~~--------g~~~--------~~~~L~~~I~~e~S~w 65 (131)
T 2o30_A 4 EAKYTWDQELNEINIQFPVTGDADSSAIKIRMVGK-KICVK-NQ--------GEIV--------IDGELLHEVDVSSLWW 65 (131)
T ss_dssp -CCCEEEEETTEEEEEEECC---CCSCEEEEEETT-EEEEE-ET--------TEEE--------EEEEBSSCEEEEEEEE
T ss_pred CCcEEEEecCCEEEEEEECCCCCCccceEEEEECC-EEEEE-EC--------CEee--------EccccccccccccCEE
Confidence 57899999999999999997699999999999999 49998 51 1111 2467888999999888
Q ss_pred EeccCCEEEEEEeccCC
Q 040821 172 AMDDAGVLTVTFTKLKP 188 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e~ 188 (220)
.+. +|-|.|+|-|.+.
T Consensus 66 ~i~-~~kv~i~L~K~~~ 81 (131)
T 2o30_A 66 VIN-GDVVDVNVTKKRN 81 (131)
T ss_dssp EEE-TTEEEEEEEESSC
T ss_pred EEe-CCEEEEEEEECCC
Confidence 999 8889999999843
No 22
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.02 E-value=0.0012 Score=60.25 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=53.1
Q ss_pred EEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccC-ceEEEeccCCEEEE
Q 040821 103 VFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPN-GFKTAMDDAGVLTV 181 (220)
Q Consensus 103 ~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e-~I~A~~~~dGVLtI 181 (220)
.|.+.+.|| |+.+++|++...++ -|+|+ . |.|+|.+.||.....- -..|+|+ ||.|+|
T Consensus 306 ~~~~~l~lP-~~~~~~~~l~~~gd-eL~v~-~-----------------g~~rR~i~LP~~L~~~~v~~A~~~-~~~L~i 364 (374)
T 3igf_A 306 NRQVRLFLP-GFDKKQVKLTQYGP-EVTVE-A-----------------GDQRRNIFLPPALSGRPITGAKFQ-NNYLII 364 (374)
T ss_dssp TTEEEEECT-TCCGGGCEEEEETT-EEEEE-E-----------------TTEEEEEECCTTTTTCCEEEEEEE-TTEEEE
T ss_pred cEEEEEECC-CCCHHHeEEEEECC-eEEEE-E-----------------CCEeecccCCHHHcCCCccccEEE-CCEEEE
Confidence 899999999 99999999999998 59999 3 2488999999986544 4578999 999999
Q ss_pred EEec
Q 040821 182 TFTK 185 (220)
Q Consensus 182 tlPK 185 (220)
+.-.
T Consensus 365 ~~~~ 368 (374)
T 3igf_A 365 SFLE 368 (374)
T ss_dssp EECC
T ss_pred EEeh
Confidence 8753
No 23
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=96.81 E-value=0.015 Score=45.12 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCceeeEEEeCCEEEEEEEcCCC--CCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCc
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAG--TKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNG 168 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G--~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~ 168 (220)
..|.+.|.++.+...|.+.||.| ++++++.|++..+ .|.|. .. .. .+. -...|...|+++.
T Consensus 6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~-~l~v~-~k-g~-------~~~-------~~~~L~~~I~~e~ 68 (131)
T 1wfi_A 6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRR-HLRVG-LK-GQ-------PPV-------VDGELYNEVKVEE 68 (131)
T ss_dssp SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETT-EEEEE-ET-TS-------CCS-------BCSCBSSCBCSTT
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCC-EEEEE-EC-Cc-------eEE-------Eeccccccccccc
Confidence 45789999999999999999966 8999999999999 59998 41 11 000 1245778899999
Q ss_pred eEEEeccCC-EEEEEEeccCC
Q 040821 169 FKTAMDDAG-VLTVTFTKLKP 188 (220)
Q Consensus 169 I~A~~~~dG-VLtItlPK~e~ 188 (220)
-.-+++ +| .|.|+|-|.++
T Consensus 69 s~w~i~-~~k~v~i~L~K~~~ 88 (131)
T 1wfi_A 69 SSWLIE-DGKVVTVHLEKINK 88 (131)
T ss_dssp CEEEEE-TTTEEEEEEEBSSS
T ss_pred CEEEEc-CCCEEEEEEEECCC
Confidence 888999 78 89999999875
No 24
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}
Probab=96.76 E-value=0.012 Score=47.49 Aligned_cols=79 Identities=16% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~ 170 (220)
..|.+.|.++.+...|.+.||.|++++++.|++..+ .|.|. .. +..+ -...|...|+++.-.
T Consensus 12 ~~~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~-~L~v~-~k--------g~~~--------l~g~L~~~I~~eeS~ 73 (157)
T 2rh0_A 12 GTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSR-HVALA-VG--------GREI--------LKGKLFDSTIADEGT 73 (157)
T ss_dssp ECSSEEEEECSSEEEEEEECCTTCCGGGEEEEECSS-EEEEE-ET--------TEEE--------EEEEBSSCBCGGGCE
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccceEEEEecC-EEEEE-EC--------CEEE--------EeeccccccCccccE
Confidence 457899999999999999998789999999999999 49998 51 1111 246788999999988
Q ss_pred EEeccCC-EEEEEEeccCC
Q 040821 171 TAMDDAG-VLTVTFTKLKP 188 (220)
Q Consensus 171 A~~~~dG-VLtItlPK~e~ 188 (220)
-+++ +| +|.|+|-|.+.
T Consensus 74 w~i~-~~k~v~I~L~K~~~ 91 (157)
T 2rh0_A 74 WTLE-DRKMVRIVLTKTKR 91 (157)
T ss_dssp EEEE-CCCEEEEEEEBSSC
T ss_pred EEEc-CCcEEEEEEEEcCC
Confidence 9999 77 59999999875
No 25
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Probab=96.65 E-value=0.013 Score=45.22 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=64.3
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEe
Q 040821 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAM 173 (220)
Q Consensus 94 ~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~ 173 (220)
.++|+++.+...|.+.+| +. ++++|++..+ .|.++ +.-.. ++. .|.-.+.|-..|++++-+.+.
T Consensus 5 ~~~W~Qt~~~V~ltI~~~-~~--~~~~V~~~~~-~l~~~-~~~~~----~~~-------~y~~~l~L~~~I~~e~S~~~v 68 (125)
T 1ejf_A 5 SAKWYDRRDYVFIEFCVE-DS--KDVNVNFEKS-KLTFS-CLGGS----DNF-------KHLNEIDLFHCIDPNDSKHKR 68 (125)
T ss_dssp CEEEEECSSEEEEEECCT-TE--EEEEEEEETT-EEEEE-EEETT----TTE-------EEEEEEEBSSCEEEEEEEEEE
T ss_pred ceeEEeCCCEEEEEEEec-CC--CceEEEEECC-EEEEE-EEeCC----CCc-------eEEEEEEccceeccccCEEEE
Confidence 799999999999999999 85 7999999998 59999 73211 121 255678899999999999999
Q ss_pred ccCCEEEEEEeccCC
Q 040821 174 DDAGVLTVTFTKLKP 188 (220)
Q Consensus 174 ~~dGVLtItlPK~e~ 188 (220)
. ++-+.|+|.|+++
T Consensus 69 ~-~~kiei~L~K~~~ 82 (125)
T 1ejf_A 69 T-DRSILCCLRKGES 82 (125)
T ss_dssp C-SSCEEEEEEESST
T ss_pred C-CCEEEEEEEECCC
Confidence 8 7889999999864
No 26
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0036 Score=49.25 Aligned_cols=86 Identities=8% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCceeeEEEeCCE-------EEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCC
Q 040821 91 EKVSVQWKSKKGV-------FHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDG 163 (220)
Q Consensus 91 ~~p~vDi~E~~d~-------~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~ 163 (220)
..|.++|+++.+. +.|.+.+| +++ +++|++..+ .|.++ +........... ..|.-.+.|...
T Consensus 5 ~~p~~~W~Q~~~~~~~~k~~V~ltI~~~-~~~--~~~V~~~~~-~l~~~-~~~~~~~g~~~~------~~y~~~l~L~~~ 73 (134)
T 2cg9_X 5 INPQVAWAQRSSTTDPERNYVLITVSIA-DCD--APELTIKPS-YIELK-AQSKPHVGDENV------HHYQLHIDLYKE 73 (134)
T ss_dssp ------CBCCCEEECCCSSEEEEECCCS-SEE--SCCCCBCSS-EEEEC-CEEC-------C------EEBCEEEECSSC
T ss_pred cCCCEEEEeCCCCcCCcCCEEEEEEEec-CCC--ceEEEEECC-EEEEE-EecccccCCccC------ceEEEEEEChhh
Confidence 4578899999877 99999999 874 888999888 59998 732110000001 135567899999
Q ss_pred cccCceEEEeccCCE-EEEEEeccCC
Q 040821 164 VNPNGFKTAMDDAGV-LTVTFTKLKP 188 (220)
Q Consensus 164 Vd~e~I~A~~~~dGV-LtItlPK~e~ 188 (220)
|++++.+.++. ++- +.|+|.|+++
T Consensus 74 Idpe~S~~~v~-~~~~vei~L~K~~~ 98 (134)
T 2cg9_X 74 IIPEKTMHKVA-NGQHYFLKLYKKDL 98 (134)
T ss_dssp CCSSSEEEEEC-CC--CEEEEEECSS
T ss_pred ccccccEEEEC-CCEEEEEEEEECCC
Confidence 99999999999 787 9999999873
No 27
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=95.78 E-value=0.02 Score=45.94 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEE-CCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCce
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIE-GRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGF 169 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~-~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I 169 (220)
..|.++|+++.+.+.|.+.+| ++ ++++|++. .+ .|.++ +. . . .+. .|.-.+.|=..|+++ -
T Consensus 3 ~~P~~~W~Qt~~~V~ltI~l~-~~--~~v~V~~~~~~-~l~~~-~~--~-~--~~~-------~y~~~l~L~~~Idpe-S 64 (150)
T 2kmw_A 3 RNPEVLWAQRSDKVYLTVALP-DA--KDISVKCEPQG-LFSFS-AL--G-A--QGE-------RFEFSLELYGKIMTE-Y 64 (150)
T ss_dssp ECCCEEEEECSSEEEEEECCS-SE--EEEEECCCTTE-EEEEE-EE--T-T--TTE-------EEEEEEEBSSCEEEE-E
T ss_pred cCCcEEEEeCCCEEEEEEEeC-CC--CceEEEEecCC-EEEEE-EE--c-C--CCc-------eEEEEeEhhhccccc-c
Confidence 358899999999999999999 97 57999998 66 59999 73 1 1 121 355678898999999 8
Q ss_pred EEEeccCCEEEEEEeccCCC
Q 040821 170 KTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 170 ~A~~~~dGVLtItlPK~e~~ 189 (220)
+.+.. ..-+.|+|.|+++.
T Consensus 65 ~~~v~-~~kIei~L~K~e~~ 83 (150)
T 2kmw_A 65 RKNVG-LRNIIFSIQKEERS 83 (150)
T ss_dssp EEEEE-SSSEEEEEEECCSS
T ss_pred eEEec-CCEEEEEEEECCCC
Confidence 88888 77899999998754
No 28
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=74.21 E-value=6.2 Score=28.62 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=28.9
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEecee
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDL 136 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger 136 (220)
+.|.-.+.||.++..+.++-.+.|| +|+|. -.+
T Consensus 61 g~f~R~~~LP~~vd~~~i~A~~~~G-vL~I~-lpK 93 (102)
T 4fei_A 61 GRFVRELAFPEPVRPASGVASLAGG-VLTVR-FEK 93 (102)
T ss_dssp EEEEEEEECSSCBCTTCCEEEEETT-EEEEE-EEB
T ss_pred cEEEEEEECCCCcchhHcEEEEECC-EEEEE-EEc
Confidence 4788889999889999999999999 89999 534
No 29
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=73.21 E-value=6.3 Score=27.75 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=28.3
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEeccC
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e 187 (220)
.|.-.+.|| +++++.|+-+++ +|+|+|+..+.+
T Consensus 8 ~~~v~~dlP-G~~~edi~V~v~-~~~L~I~g~~~~ 40 (85)
T 3q9p_A 8 RWRVSLDVN-HFAPDELTVKTK-DGVVEITGKHAA 40 (85)
T ss_dssp EEEEEEECT-TTCCSEEEEEEE-TTEEEEEEEEC-
T ss_pred EEEEEEECC-CCChHHEEEEEE-CCEEEEEEEEcc
Confidence 466789997 689999999999 999999998764
No 30
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=72.84 E-value=5.9 Score=28.35 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=27.8
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
+.|.-.+.||.+++.+.++-.+.|| +|+|.
T Consensus 64 g~f~r~~~LP~~vd~~~i~A~~~~G-vL~I~ 93 (100)
T 3gla_A 64 GSFHRRFALPDSADADGITAAGRNG-VLEIR 93 (100)
T ss_dssp EEEEEEEECCTTBCTTSCEEEEETT-EEEEE
T ss_pred eEEEEEEECCCCcChHHeEEEEeCC-EEEEE
Confidence 5788899999779999999999999 89999
No 31
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=67.57 E-value=8.5 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCCCCCeEEEE-ECCcEEEEEecee
Q 040821 104 FHFKAHLPAGTKMEDMMVGI-EGRKSLMIGICDL 136 (220)
Q Consensus 104 ~~l~~dLP~G~~kedI~V~v-~~~~vL~Is~Ger 136 (220)
|.-.+.||.+++.+.++-.+ .|| +|+|+ ..+
T Consensus 56 F~R~~~LP~~vd~~~i~A~~s~nG-vL~I~-lPK 87 (101)
T 2wj5_A 56 FHRRYRLPPGVDPAAVTSALSPEG-VLSIQ-ATP 87 (101)
T ss_dssp EEEEEECCTTBCTTCCEEEECTTS-EEEEE-ECB
T ss_pred EEEEEECCCCcChhHCEEEECCCC-EEEEE-EEC
Confidence 88999999889999999999 788 89999 544
No 32
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=66.47 E-value=7.9 Score=27.43 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEeccC
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~e 187 (220)
.|.-.+.|| +++.+.|+-++. +|.|+|+..+.+
T Consensus 7 ~~~v~~dlP-G~~~edi~V~v~-~~~L~I~g~~~~ 39 (90)
T 2y1y_A 7 RFSVNLDVK-HFSPEELKVKVL-GDVIEVHGKHEE 39 (90)
T ss_dssp CEEEEEECT-TSCGGGEEEEEE-TTEEEEEEEEEE
T ss_pred EEEEEEECC-CCcHHHeEEEEE-CCEEEEEEEEec
Confidence 466789998 899999999999 999999998754
No 33
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=62.94 E-value=11 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCCCCCeEEEE-ECCcEEEEEeceeec
Q 040821 104 FHFKAHLPAGTKMEDMMVGI-EGRKSLMIGICDLSK 138 (220)
Q Consensus 104 ~~l~~dLP~G~~kedI~V~v-~~~~vL~Is~Ger~~ 138 (220)
|.=.+.||.+++.+.|+-.+ .|| +|+|+ ..+..
T Consensus 57 F~R~~~LP~~vd~~~i~A~~s~~G-vL~I~-~PK~~ 90 (106)
T 3l1e_A 57 FHRRYRLPSNVDQSALSCSLSADG-MLTFS-GPKIP 90 (106)
T ss_dssp EEEEEECCTTBCTTSCEEEECTTS-EEEEE-EEBCC
T ss_pred EEEEEECCCCcChhHcEEEECCCC-EEEEE-EEccC
Confidence 88889999889999999999 788 89999 64433
No 34
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=62.83 E-value=12 Score=29.30 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=28.6
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEecee
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDL 136 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger 136 (220)
+.|.-.+.||.+++.+.|+-.+.|| +|+|. -.+
T Consensus 117 g~f~R~~~LP~~vd~~~i~A~~~nG-vL~I~-lpK 149 (161)
T 4eld_A 117 EEIYRTIKLPATVKEENASAKFENG-VLSVI-LPK 149 (161)
T ss_dssp CEEEEEEECSSCBCGGGCEEEEETT-EEEEE-EEB
T ss_pred ccEEEEEECCCCcccccEEEEEECC-EEEEE-EEc
Confidence 4677888999889999999999999 89999 534
No 35
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=59.10 E-value=19 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=28.7
Q ss_pred EEEEEEECCCCcccCceEEEeccC-CEEEEEEeccCC
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDA-GVLTVTFTKLKP 188 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~d-GVLtItlPK~e~ 188 (220)
.|.-.+.|| +++.+.|+-++. + |.|+|+.-+...
T Consensus 35 ~~~v~~~lP-G~~~edi~V~v~-~~~~L~I~g~~~~~ 69 (123)
T 3aab_A 35 YLVVVADLA-GFNKEKIKARVS-GQNELIIEAEREIT 69 (123)
T ss_dssp EEEEEEECC-SCCGGGCEEEEE-TTTEEEEEEECCCC
T ss_pred EEEEEEECC-CCCHHHEEEEEe-CCCEEEEEEEEecc
Confidence 455678888 689999999999 8 999999998654
No 36
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=57.65 E-value=15 Score=28.65 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.4
Q ss_pred CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEecee
Q 040821 102 GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDL 136 (220)
Q Consensus 102 d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger 136 (220)
+.|.-.+.||.++..+.|+-++.|| +|+|. -.+
T Consensus 104 g~F~R~~~LP~~vd~~~i~A~~~nG-vL~I~-lPK 136 (151)
T 1gme_A 104 GKFVRRFRLLEDAKVEEVKAGLENG-VLTVT-VPK 136 (151)
T ss_dssp CCEEEEEECSSCCCGGGCEEEEETT-EEEEE-EEC
T ss_pred cEEEEEEECCCCccccceEEEEECC-EEEEE-EEc
Confidence 4577789999889999999999999 89999 533
No 37
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=50.51 E-value=18 Score=29.08 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCCCCCeEEEE-ECCcEEEEEecee
Q 040821 104 FHFKAHLPAGTKMEDMMVGI-EGRKSLMIGICDL 136 (220)
Q Consensus 104 ~~l~~dLP~G~~kedI~V~v-~~~~vL~Is~Ger 136 (220)
|.=.+.||.+++.+.|+-.+ .|| +|+|+ ..+
T Consensus 118 F~R~~~LP~~Vd~~~i~A~~s~dG-vL~I~-lPK 149 (175)
T 2klr_A 118 FHRKYRIPADVDPLTITSSLSSDG-VLTVN-GPR 149 (175)
T ss_dssp EEEEEECTTTCCTTTCEEEECTTS-CEEEE-EEC
T ss_pred EEEEEECCCCcChhHeEEEEcCCC-EEEEE-EEC
Confidence 55677899889999999999 688 89999 644
No 38
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=38.93 E-value=70 Score=25.74 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=30.2
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccCCCcchhhHHHHHHhh
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICEK 215 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~~~~~~~~~ 215 (220)
|+-.+..||+|+|++--... .+...|.|...+.++......+.++
T Consensus 105 Vtf~iD~nGiL~VsA~d~~t--g~~~~i~I~~~~~Ls~eei~~mi~~ 149 (182)
T 3n8e_A 105 VTFDIDANGIVHVSAKDKGT--GREQQIVIQSSGGLSKDDIENMVKN 149 (182)
T ss_dssp EEEEECTTCCEEEEEEETTT--CCEEEEEESCCCCCCHHHHHHHHHH
T ss_pred EEEEEecCCEEEEEEEEcCC--CCEeeEEEecCccCCHHHHHHHHHH
Confidence 44556679999999875433 3556777766688887766555443
No 39
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=36.23 E-value=78 Score=24.54 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccCCCcchhhHHHHHHh
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLICE 214 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~~~~~~~~ 214 (220)
|+-.+..||+|+|++--... .+...|.|...+.++......+.+
T Consensus 85 Vtf~iD~nGiL~Vsa~d~~t--g~~~~i~I~~~~~Ls~~ei~~~~~ 128 (151)
T 3dqg_A 85 VTFDIDANGIVNVSARDRGT--GKEQQIVIQSSGGLSKDQIENMIK 128 (151)
T ss_dssp EEEEECTTSEEEEEEEETTT--CCEEEEEEECSSSSCHHHHHHHHH
T ss_pred EEEEeccCcEEEEEEEEccC--CCEeEEEEecCCCCCHHHHHHHHH
Confidence 45556679999999875443 345566666558888776655544
No 40
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=35.97 E-value=88 Score=23.85 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=27.1
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccCC-CcchhhHHHHHHh
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSL-GCLAHAACLLICE 214 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~-~~~~~~~~~~~~~ 214 (220)
|.-.+..||+|+|++--... .+...|.|... +.++........+
T Consensus 85 V~f~id~nGiL~V~a~d~~t--g~~~~i~i~~~~~~ls~eei~~~~~ 129 (152)
T 2op6_A 85 VTFEIDVNGILHVSAEDKGT--GNKNKLTITNDHNRLSPEDIERMIN 129 (152)
T ss_dssp EEEEECTTSCEEEEEEETTT--CCEEEEEECSSSSCCCHHHHHHHHH
T ss_pred EEEEECCCcEEEEEEEEecC--CcEEEEEeeccccCCCHHHHHHHHH
Confidence 44455669999999863332 34556777544 5677665554433
No 41
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=35.61 E-value=95 Score=24.00 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=28.1
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccCC-CcchhhHHHHHHh
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSL-GCLAHAACLLICE 214 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~-~~~~~~~~~~~~~ 214 (220)
|+-.+..||+|+|++--... .+...|.|... +.++......+.+
T Consensus 85 Vtf~iD~nGiL~V~a~d~~t--g~~~~i~I~~~~~~ls~~ei~~~~~ 129 (152)
T 3h0x_A 85 VTFALDANGILKVSATDKGT--GKSESITITNDKGRLTQEEIDRMVE 129 (152)
T ss_dssp EEEEECTTSEEEEEEEETTT--CCEEEEEEECCTTCCCHHHHHHHHH
T ss_pred EEEEEcCCCEEEEEEEEcCC--CcEeEEEEecCCCCCCHHHHHHHHH
Confidence 45556679999999875433 34556677543 6777666554433
No 42
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=28.81 E-value=1.3e+02 Score=25.05 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=32.4
Q ss_pred EEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEecc
Q 040821 107 KAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKL 186 (220)
Q Consensus 107 ~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK~ 186 (220)
.+.+| +.++|+++++ .++|+ |.+ |+..+.| +.. |....+ ||.|+|+.+..
T Consensus 35 pI~IP-----~gV~V~i~~~-~VtVK-GPk---------------G~L~~~~--~~~-----v~i~~e-~~~i~v~~~~~ 84 (212)
T 1nkw_E 35 PIAVP-----SGVTVNAQDG-VFKVK-GPK---------------GELTVPY--NTE-----LTVRQD-GDQLLVERPSD 84 (212)
T ss_pred ceecC-----CCcEEEEeCC-EEEEE-CCC---------------EEEEEEC--CCC-----eEEEEE-CCEEEEEcCCC
Confidence 45666 6778999888 79999 843 2333333 443 444567 89888876543
No 43
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=28.78 E-value=1.1e+02 Score=24.61 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=29.5
Q ss_pred CCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEec
Q 040821 117 EDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 117 edI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK 185 (220)
+.++|+++++ .++|+ |.+ |+..|.| +.. |....+ ||.|+|+.+.
T Consensus 12 ~gV~V~i~~~-~VtVk-Gpk---------------G~L~~~~--~~~-----v~i~~~-~~~l~v~~~~ 55 (177)
T 1rl6_A 12 AGVTVTVNGN-TVTVK-GPK---------------GELTRTF--HPD-----MTITVE-GNVITVTRPS 55 (177)
T ss_dssp TTCEEEEETT-EEEEE-ETT---------------EEEEEEC--CTT-----CEEEEE-TTEEEEECSC
T ss_pred CCCEEEEeCC-EEEEE-CCC---------------eEEEEEc--CCC-----EEEEEe-CCEEEEEcCC
Confidence 6788999888 79999 832 2333443 544 444578 8988887554
No 44
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=28.25 E-value=97 Score=22.61 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=14.2
Q ss_pred CCeEEEEECCcEEEEEece
Q 040821 117 EDMMVGIEGRKSLMIGICD 135 (220)
Q Consensus 117 edI~V~v~~~~vL~Is~Ge 135 (220)
+.++|+++++ .++|+ |.
T Consensus 21 ~gV~V~i~~~-~VtVK-GP 37 (100)
T 2cql_A 21 ENVDITLKGR-TVIVK-GP 37 (100)
T ss_dssp SSCEEEEETT-EEEEE-ET
T ss_pred CCCEEEEeCC-EEEEE-CC
Confidence 6788999888 69999 83
No 45
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=27.88 E-value=1.1e+02 Score=25.14 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=26.4
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccCCCcchhhHHHHHH
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLIC 213 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~~~~~~~ 213 (220)
|+..+..||+|+|++--... .+...|.|...+.++........
T Consensus 83 Vtf~iD~nGiL~V~a~d~~t--g~~~~i~i~~~~~Ls~eei~~~~ 125 (227)
T 1u00_A 83 VTFQVDADGLLSVTAMEKST--GVEASIQVKPSYGLTDSEIASMI 125 (227)
T ss_dssp EEEEECTTCCEEEEEEETTT--CCEEEEEECCCSCCCHHHHHHHH
T ss_pred EEEEECCCCcEEEEeecccc--cccceEEEEeccCCCHHHHHHHH
Confidence 34455669999999853332 34556777655557766554443
No 46
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=25.09 E-value=38 Score=25.17 Aligned_cols=17 Identities=35% Similarity=0.708 Sum_probs=14.7
Q ss_pred ceEEEeccCCEEEEEEec
Q 040821 168 GFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK 185 (220)
.+.+.+. +|||||+++.
T Consensus 29 d~D~e~~-~gVLti~f~~ 45 (106)
T 1ew4_A 29 DIDCEIN-GGVLTITFEN 45 (106)
T ss_dssp CCEEEEE-TTEEEEECTT
T ss_pred CEeeecc-CCEEEEEECC
Confidence 4788999 9999999974
No 47
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=24.31 E-value=87 Score=23.70 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=17.9
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEecc
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~ 199 (220)
++..++.||+|+|++--.... +...|.|+
T Consensus 102 Vtf~iD~nGiL~V~a~d~~tg--~~~~i~i~ 130 (135)
T 1q5l_A 102 VTFDIDADGILHVSAKDKNSG--KEQKITIK 130 (135)
T ss_dssp EEEEECTTSEEEEEEEETTTC--CEEEEEEE
T ss_pred EEEEECCCCEEEEEEEECCCC--CEEEEEEe
Confidence 444556699999998644433 34445554
No 48
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=24.27 E-value=1.6e+02 Score=24.16 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=27.0
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccCCCcchhhHHHHH
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLLI 212 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~~~~~~~~~~~~~ 212 (220)
|+-.+..||+|+|++--... .+...|.|...+.++....-.+
T Consensus 86 Vtf~iD~nGiL~V~a~d~~t--g~~~~i~I~~~~~Ls~eeI~~m 127 (219)
T 4e81_A 86 VTFDIDADGILHVSAKDKNS--GKEQKITIKASSGLNEDEIQKM 127 (219)
T ss_dssp EEEEECTTCCEEEEEEETTT--CCEEEEEECTTCSCCHHHHHHH
T ss_pred EEEEeCCCCCEeeeeecccc--CccceEeeeccccccHHHHHHH
Confidence 44556679999999875443 3456666766566776554433
No 49
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=23.97 E-value=51 Score=25.36 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=14.3
Q ss_pred eEEEeccCCEEEEEEec
Q 040821 169 FKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK 185 (220)
+.+.+. +|||||+++.
T Consensus 49 ~Dve~~-~gVLti~f~~ 64 (123)
T 3oeq_A 49 PDVELS-HGVMTLEIPA 64 (123)
T ss_dssp CEEEEC-SSEEEEECTT
T ss_pred eEEEcc-CCEEEEEECC
Confidence 788899 9999999974
No 50
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=23.80 E-value=1.2e+02 Score=23.48 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred eEEEeccCCEEEEEEeccCCCCCCeeEEeccC-CCcchhhHHHHHHh
Q 040821 169 FKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS-LGCLAHAACLLICE 214 (220)
Q Consensus 169 I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~-~~~~~~~~~~~~~~ 214 (220)
|+-.+..||+|+|++--... .+...|.|.. .+.++......+.+
T Consensus 85 Vtf~iD~nGiL~Vsa~d~~t--g~~~~i~I~~~~~~Ls~~ei~~~~~ 129 (152)
T 3dob_A 85 VTFNIDANGILNVSAEDKST--GKSNRITIQNEKGRLTQSDIDRMVH 129 (152)
T ss_dssp EEEEECTTCCEEEEEEETTT--CCEEEEEECCC----CHHHHHHHHH
T ss_pred EEEEeCCCCeEEEEEEEcCC--CCEEEEEEEcCCCCCCHHHHHHHHH
Confidence 45556679999999875432 4556677754 56677666554433
No 51
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.71 E-value=1.5e+02 Score=24.08 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEE
Q 040821 106 FKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTF 183 (220)
Q Consensus 106 l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItl 183 (220)
-.+++| +.++|++.++ .++|+ |.+ |+-.|.|.- .+ ++-.++ +|.|+|+.
T Consensus 9 ~~I~IP-----~gV~v~i~~~-~V~Vk-Gpk---------------G~L~~~~~~-~~-----v~i~~~-~~~l~v~~ 57 (184)
T 3j21_F 9 EEVEIP-----EGVEVTVEGY-KVKVK-GPK---------------GELEREFFW-PG-----IQIFTE-DGNVVIYK 57 (184)
T ss_dssp EEEECC-----SSCEEEESSS-EEEEE-CSS---------------CEEEEECCC-TT-----CEEEEE-TTEEEEEC
T ss_pred EEEeCC-----CCcEEEEeCC-EEEEE-cCC---------------eEEEEEecC-Cc-----EEEEEe-CCEEEEEE
Confidence 345666 7889999877 79999 843 222333321 22 445577 88888874
No 52
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=20.97 E-value=57 Score=22.75 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=19.1
Q ss_pred CceEEEeccCCEEEEEEeccCCCCCCeeEEeccC
Q 040821 167 NGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS 200 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~ 200 (220)
..|+|.|+ ||||.--=| ..-....+..|.|..
T Consensus 3 k~IeAiYE-nGVfkPLe~-l~L~EG~kV~I~I~~ 34 (69)
T 2nwt_A 3 KIIEAVYE-NGVFKPLQK-VDLKEGERVKIKLEL 34 (69)
T ss_dssp CCEEEEEE-TTEEEESSC-CCCCTTEEEEEECCC
T ss_pred ceEEEEEE-CCEEeECCc-CCCCCCCEEEEEEEe
Confidence 45899999 999864322 222223455666643
No 53
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=20.76 E-value=1.7e+02 Score=23.59 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=29.1
Q ss_pred CCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEEEec
Q 040821 117 EDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 117 edI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlPK 185 (220)
+.++|+++++ .++|+ |.+ |+..|.|. +.. ++...+ ||.|+|+.+.
T Consensus 10 ~gV~v~i~~~-~vtVk-Gpk---------------G~L~~~~~-~~~-----v~i~~~-~~~i~v~~~~ 54 (178)
T 1vq8_E 10 EDVDAEQDHL-DITVE-GDN---------------GSVTRRLW-YPD-----IDVSVD-GDTVVIESDE 54 (178)
T ss_dssp TTCEEEEETT-EEEEE-ETT---------------EEEEEECC-CTT-----CEEEEE-TTEEEEECSC
T ss_pred CCCEEEEeCC-EEEEE-CCC---------------eEEEEEEE-CCe-----EEEEEE-CCEEEEEcCC
Confidence 6788999888 79999 832 22333331 333 445578 8988887554
No 54
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}
Probab=20.13 E-value=1.1e+02 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=23.2
Q ss_pred EEEEEEECCCCcccCceEEEeccCCEEEEEEe
Q 040821 153 KNFRSFILPDGVNPNGFKTAMDDAGVLTVTFT 184 (220)
Q Consensus 153 ~F~R~~~LPe~Vd~e~I~A~~~~dGVLtItlP 184 (220)
...-+|.||.+++.+.+...++ ..-|+|.+.
T Consensus 15 ~V~i~I~lp~~~~~kdv~V~i~-~~~l~v~~~ 45 (131)
T 2o30_A 15 EINIQFPVTGDADSSAIKIRMV-GKKICVKNQ 45 (131)
T ss_dssp EEEEEEECC---CCSCEEEEEE-TTEEEEEET
T ss_pred EEEEEEECCCCCCccceEEEEE-CCEEEEEEC
Confidence 3455799999999999999999 888898873
Done!