Query 040821
Match_columns 220
No_of_seqs 178 out of 1338
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 19:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040821.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040821hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gmea_ b.15.1.1 (A:) Small he 99.9 7E-27 5.1E-31 187.5 12.2 107 91-200 41-150 (150)
2 d1shsa_ b.15.1.1 (A:) Small he 99.9 3.2E-24 2.3E-28 164.1 12.5 101 92-196 10-114 (115)
3 d1rl1a_ b.15.1.3 (A:) Suppress 98.1 1.4E-05 1E-09 56.6 9.6 82 92-189 2-83 (92)
4 d1ejfa_ b.15.1.2 (A:) Co-chape 96.6 0.0084 6.1E-07 43.2 9.5 81 92-189 3-83 (110)
5 d1wh0a_ b.15.1.3 (A:) Ubiquiti 96.3 0.0044 3.2E-07 47.1 6.8 90 92-190 19-114 (134)
6 d1wfia_ b.15.1.4 (A:) Nuclear 95.6 0.086 6.3E-06 39.1 11.5 83 90-189 5-89 (131)
7 d1wgva_ b.15.1.4 (A:) NudC dom 95.5 0.11 8E-06 37.7 11.3 82 92-188 19-102 (124)
8 d1shsa_ b.15.1.1 (A:) Small he 58.8 7.1 0.00052 26.9 4.9 31 101-132 70-100 (115)
9 d1gmea_ b.15.1.1 (A:) Small he 57.3 7.1 0.00052 28.4 4.9 29 103-132 104-132 (150)
10 d1rl6a1 d.141.1.1 (A:7-81) Rib 55.7 15 0.0011 23.8 6.0 42 116-182 5-46 (75)
11 d1vqoe1 d.141.1.1 (E:1-79) Rib 53.6 19 0.0014 23.4 6.3 47 107-182 4-50 (79)
12 d2fqla1 d.82.2.1 (A:61-172) C- 34.4 15 0.0011 25.9 3.2 18 167-185 38-55 (112)
13 d1yuwa1 b.130.1.1 (A:385-543) 32.6 48 0.0035 24.2 6.2 46 168-215 91-137 (159)
14 d1u00a2 b.130.1.1 (A:389-503) 29.1 21 0.0015 24.9 3.3 30 168-199 82-111 (115)
15 d1ekga_ d.82.2.1 (A:) C-termin 23.3 20 0.0014 25.5 2.2 18 167-185 32-49 (119)
No 1
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=99.94 E-value=7e-27 Score=187.47 Aligned_cols=107 Identities=29% Similarity=0.465 Sum_probs=95.8
Q ss_pred CCceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE---EeEEEEEEECCCCcccC
Q 040821 91 EKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV---DGKNFRSFILPDGVNPN 167 (220)
Q Consensus 91 ~~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~---~g~F~R~~~LPe~Vd~e 167 (220)
..|++||+|++++|+|.++|| |++++||+|+++++++|+|+ |++..+.+.++..|+.. +|.|+|+|.||++||.+
T Consensus 41 ~~p~~dv~e~~~~~~i~~~lP-G~~~edi~v~v~~~~~l~i~-~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~ 118 (150)
T d1gmea_ 41 ANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS-GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE 118 (150)
T ss_dssp GGGCEEEEECSSEEEEEEECT-TCCGGGEEEEEETTTEEEEE-ECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGG
T ss_pred CCCceeEEECCCEEEEEEEeC-CCccCCEEEEEEEccceeEE-EEEecccccccceeeeeeeccceEEEEEECCCCeeec
Confidence 468999999999999999999 99999999999987678999 98766655555666654 89999999999999999
Q ss_pred ceEEEeccCCEEEEEEeccCCCCCCeeEEeccC
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS 200 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~ 200 (220)
+|+|+|+ ||||+|++||.++++++.+.|+|++
T Consensus 119 ~i~A~~~-nGvL~I~lpK~~~~~~~~~~I~I~g 150 (150)
T d1gmea_ 119 EVKAGLE-NGVLTVTVPKAEVKKPEVKAIQISG 150 (150)
T ss_dssp GCEEEEE-TTEEEEEEECCCCCTTCCCCCCCCC
T ss_pred eeEEEEE-CCEEEEEEEcCCcCCCCceEEeccC
Confidence 9999999 9999999999998888888898864
No 2
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.91 E-value=3.2e-24 Score=164.12 Aligned_cols=101 Identities=22% Similarity=0.308 Sum_probs=85.8
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEE----EeEEEEEEECCCCcccC
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCV----DGKNFRSFILPDGVNPN 167 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~----~g~F~R~~~LPe~Vd~e 167 (220)
.|++||+|+++.|.|.++|| |++++||+|+++++ .|+|+ |++..........++.. +|.|+|+|.||.++|.+
T Consensus 10 ~~pvdi~e~~~~~~i~~~lP-G~~~edi~v~v~~~-~l~I~-~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~ 86 (115)
T d1shsa_ 10 FMPISIIEGDQHIKVIAWLP-GVNKEDIILNAVGD-TLEIR-AKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE 86 (115)
T ss_dssp CCCEEEEECSSEEEEEEECT-TCCGGGEEEEEETT-EEEEE-EECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGG
T ss_pred cCceEEEEcCCEEEEEEECC-CCCHHHEEEEEECC-EEEEE-EEeccccccccccEEEEeeecccceEEEEecCCceeec
Confidence 46699999999999999999 99999999999999 69999 98765544444444332 79999999999999999
Q ss_pred ceEEEeccCCEEEEEEeccCCCCCCeeEE
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I 196 (220)
+|+|+|+ ||+|+|++||.+..+++.+.|
T Consensus 87 ~i~A~~~-nGvL~I~lpK~~~~~~~~I~I 114 (115)
T d1shsa_ 87 NASAKFE-NGVLSVILPKAESSIKKGINI 114 (115)
T ss_dssp GCEEEEE-TTEEEEEEEBCGGGCCEECCC
T ss_pred ceEEEEE-CCEEEEEEEeCCCCCCceeee
Confidence 9999999 999999999987665555443
No 3
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.06 E-value=1.4e-05 Score=56.63 Aligned_cols=82 Identities=11% Similarity=0.130 Sum_probs=68.2
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.++.+|+++++...|.+.+| |+.++++.|++.+.. |.++ ... . .+. .|.-.+.|-..|++++.+.
T Consensus 2 k~ry~W~Qt~~~V~i~i~~~-~~~~~~v~v~~~~~~-l~v~-~~~-~----~~~-------~y~~~~~L~~~I~p~~s~~ 66 (92)
T d1rl1a_ 2 KIKYDWYQTESQVVITLMIK-NVQKNDVNVEFSEKE-LSAL-VKL-P----SGE-------DYNLKLELLHPIIPEQSTF 66 (92)
T ss_dssp CCCEEEEECSSEEEEEECCC-SCCGGGEEEECSSSC-EEEE-EEC-T----TSS-------EEEEEECBSSCCCGGGEEE
T ss_pred CCceeEEeCCCEEEEEEEeC-CCChHheEEEEecCE-EEEE-EEc-C----CCc-------EEEEEEEcCcccCchhcEE
Confidence 46789999999999999999 999999999999984 9888 421 1 122 2445778999999999999
Q ss_pred EeccCCEEEEEEeccCCC
Q 040821 172 AMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e~~ 189 (220)
++. ++-+.|+|.|+++.
T Consensus 67 ~~~-~~kiei~L~K~~~~ 83 (92)
T d1rl1a_ 67 KVL-STKIEIKLKKPEAV 83 (92)
T ss_dssp EEC-SSSEEEEEECSSCC
T ss_pred EEe-CCEEEEEEEECCCC
Confidence 999 89999999998654
No 4
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.56 E-value=0.0084 Score=43.17 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=63.9
Q ss_pred CceeeEEEeCCEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A 171 (220)
.|++.|+++.+...|.+.+| +. .+++|.++.+. +.++ +.... .+. .|.-.+.|-..|+++....
T Consensus 3 p~~~~W~Qt~~~V~i~I~v~-~~--~~~~v~i~~~~-l~~~-~~~~~----~~~-------~y~l~~~L~~~I~~~~s~~ 66 (110)
T d1ejfa_ 3 PASAKWYDRRDYVFIEFCVE-DS--KDVNVNFEKSK-LTFS-CLGGS----DNF-------KHLNEIDLFHCIDPNDSKH 66 (110)
T ss_dssp CCCEEEEECSSEEEEEECCT-TE--EEEEEEEETTE-EEEE-EEETT----TTE-------EEEEEEEBSSCEEEEEEEE
T ss_pred CCCcEEEECCCEEEEEEEeC-CC--CCceEEEEece-EEEE-EEecC----CCc-------eEEEEEEcccCcccCccEE
Confidence 35688999999999999999 85 57888888884 8888 63211 122 2445678999999999999
Q ss_pred EeccCCEEEEEEeccCCC
Q 040821 172 AMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 172 ~~~~dGVLtItlPK~e~~ 189 (220)
++. ++-+.|+|.|+++.
T Consensus 67 ~v~-~~kiei~L~K~~~~ 83 (110)
T d1ejfa_ 67 KRT-DRSILCCLRKGESG 83 (110)
T ss_dssp EEC-SSCEEEEEEESSTT
T ss_pred EEe-CCEEEEEEEEcCCC
Confidence 999 88999999998653
No 5
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.32 E-value=0.0044 Score=47.12 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=69.7
Q ss_pred CceeeEEEeC-CEEEEEEEcCCCCCCCCeEEEEECCcEEEEEeceeecc-----ccCCCCeEEEEEeEEEEEEECCCCcc
Q 040821 92 KVSVQWKSKK-GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKT-----EEGDTSTLMCVDGKNFRSFILPDGVN 165 (220)
Q Consensus 92 ~p~vDi~E~~-d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e-----~e~~~~~~~r~~g~F~R~~~LPe~Vd 165 (220)
..+-|||++. +...|.+-+. |+.+++++|++.++ .|+|+ -..... +..... ...|.-.+.|-..++
T Consensus 19 ~ir~dwyq~~~~~V~VtI~~K-~v~ke~~~V~f~~~-sl~v~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~~I~ 90 (134)
T d1wh0a_ 19 FVKNDSYEKGPDSVVVHVYVK-EICRDTSRVLFREQ-DFTLI-FQTRDGNFLRLHPGCGP-----HTTFRWQVKLRNLIE 90 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECC-SBCTTSCEEEECSS-EEEEE-ECBCCHHHHHHSTTCCT-----TSCEEEEEEBSSCEE
T ss_pred ccccceeecCCCEEEEEEEeC-CCchhheEEEEeCC-EEEEE-EECCCCcceeeccccCc-----CeeEEEeeecccccC
Confidence 4567999995 7999999999 99999999999998 69999 311000 000000 124777899999999
Q ss_pred cCceEEEeccCCEEEEEEeccCCCC
Q 040821 166 PNGFKTAMDDAGVLTVTFTKLKPEK 190 (220)
Q Consensus 166 ~e~I~A~~~~dGVLtItlPK~e~~k 190 (220)
+++-+.+.. .+-+.|+|.|+++.+
T Consensus 91 pe~S~~~v~-~~kiei~L~K~~~~~ 114 (134)
T d1wh0a_ 91 PEQCTFCFT-ASRIDICLRKRQSQR 114 (134)
T ss_dssp EEEEEEEEC-SSEEEEEEEESSSCC
T ss_pred hhHcEEEeC-CCEEEEEEEeCCCCc
Confidence 999999999 899999999987654
No 6
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.63 E-value=0.086 Score=39.08 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=60.6
Q ss_pred CCCceeeEEEeCCEEEEEEEc--CCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccC
Q 040821 90 LEKVSVQWKSKKGVFHFKAHL--PAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPN 167 (220)
Q Consensus 90 ~~~p~vDi~E~~d~~~l~~dL--P~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e 167 (220)
...|.+.|.++.+...|.+.+ |.|++++||.|++..++ |.|. -.. . ..+. . -.|...|+++
T Consensus 5 ~~~~~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~-l~v~-v~~-~------~~ll--~------g~L~~~I~~d 67 (131)
T d1wfia_ 5 SSGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRH-LRVG-LKG-Q------PPVV--D------GELYNEVKVE 67 (131)
T ss_dssp SSCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTE-EEEE-ETT-S------CCSB--C------SCBSSCBCST
T ss_pred CCCCCeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCE-EEEE-EcC-C------ceee--c------ccccCccccc
Confidence 357889999999998888755 44789999999999994 9988 311 0 0110 1 1466788888
Q ss_pred ceEEEeccCCEEEEEEeccCCC
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPE 189 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~ 189 (220)
.-.=.++++++|.|+|.|....
T Consensus 68 es~W~ied~~~l~i~L~K~~~~ 89 (131)
T d1wfia_ 68 ESSWLIEDGKVVTVHLEKINKM 89 (131)
T ss_dssp TCEEEEETTTEEEEEEEBSSSC
T ss_pred ccEEEEeCCCEEEEEEEECCCC
Confidence 8777888345899999997543
No 7
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.45 E-value=0.11 Score=37.75 Aligned_cols=82 Identities=12% Similarity=0.228 Sum_probs=60.3
Q ss_pred CceeeEEEeCCEEEEEEEcCCCC-CCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceE
Q 040821 92 KVSVQWKSKKGVFHFKAHLPAGT-KMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFK 170 (220)
Q Consensus 92 ~p~vDi~E~~d~~~l~~dLP~G~-~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~ 170 (220)
.+.+.|.++.+...|.+.||.|. +++||.|++... .|.|+ - ... .... +.-...|...|+++.-.
T Consensus 19 ~~~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~-~l~v~-v--~~~---~~~~-------~~l~g~L~~~I~~deS~ 84 (124)
T d1wgva_ 19 RENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSS-SIRVA-M--LEE---NGER-------VLMEGKLTHKINTESSL 84 (124)
T ss_dssp CSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSS-EEEEE-E--ECS---SSEE-------EEEEEEBSSCBCTTTCE
T ss_pred CCCeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeC-EEEEE-E--ecc---CCcc-------eEEeCcccCcccccccE
Confidence 45789999999999999999554 468999999998 48888 2 111 1111 22346799999999988
Q ss_pred EEeccCC-EEEEEEeccCC
Q 040821 171 TAMDDAG-VLTVTFTKLKP 188 (220)
Q Consensus 171 A~~~~dG-VLtItlPK~e~ 188 (220)
-.++ ++ +|.+.+.|.+.
T Consensus 85 w~i~-~~~~~i~~lkK~~~ 102 (124)
T d1wgva_ 85 WSLE-PGKCVLVNLSKVGE 102 (124)
T ss_dssp EEEC-TTSEEEEEECBSSS
T ss_pred EEEe-CCCEEEEEEEecCC
Confidence 8998 66 56666666554
No 8
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=58.78 E-value=7.1 Score=26.86 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=28.7
Q ss_pred CCEEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 101 KGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 101 ~d~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
.+.|.-.+.||..++.+.++-.+.|| +|+|.
T Consensus 70 ~~~f~r~~~lP~~vd~~~i~A~~~nG-vL~I~ 100 (115)
T d1shsa_ 70 EEEIYRTIKLPATVKEENASAKFENG-VLSVI 100 (115)
T ss_dssp CCEEEEEEECSSCBCGGGCEEEEETT-EEEEE
T ss_pred ccceEEEEecCCceeecceEEEEECC-EEEEE
Confidence 36899999999889999999999999 89999
No 9
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=57.35 E-value=7.1 Score=28.37 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=26.5
Q ss_pred EEEEEEEcCCCCCCCCeEEEEECCcEEEEE
Q 040821 103 VFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132 (220)
Q Consensus 103 ~~~l~~dLP~G~~kedI~V~v~~~~vL~Is 132 (220)
.|.-.+.||..+..+.|+-.+.+| +|+|+
T Consensus 104 ~f~r~~~LP~~vd~~~i~A~~~nG-vL~I~ 132 (150)
T d1gmea_ 104 KFVRRFRLLEDAKVEEVKAGLENG-VLTVT 132 (150)
T ss_dssp CEEEEEECSSCCCGGGCEEEEETT-EEEEE
T ss_pred eEEEEEECCCCeeeceeEEEEECC-EEEEE
Confidence 567789999889999999999999 89999
No 10
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=55.69 E-value=15 Score=23.77 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=29.8
Q ss_pred CCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEE
Q 040821 116 MEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVT 182 (220)
Q Consensus 116 kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtIt 182 (220)
|++++|+++++ .++|+ |.+ |+ -++.||..+ +...+ |+.|+|.
T Consensus 5 P~gV~v~i~~~-~i~vk-Gpk---------------G~--L~~~~~~~v-----~i~~~-~~~i~v~ 46 (75)
T d1rl6a1 5 PAGVTVTVNGN-TVTVK-GPK---------------GE--LTRTFHPDM-----TITVE-GNVITVT 46 (75)
T ss_dssp CTTCEEEEETT-EEEEE-ETT---------------EE--EEEECCTTC-----EEEEE-TTEEEEE
T ss_pred CCCcEEEEECC-EEEEE-eCC---------------EE--EEEeccCcE-----EEEEe-CceEEEc
Confidence 48899999998 69999 832 12 234556544 45678 8988887
No 11
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=53.59 E-value=19 Score=23.38 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=31.0
Q ss_pred EEEcCCCCCCCCeEEEEECCcEEEEEeceeeccccCCCCeEEEEEeEEEEEEECCCCcccCceEEEeccCCEEEEE
Q 040821 107 KAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVT 182 (220)
Q Consensus 107 ~~dLP~G~~kedI~V~v~~~~vL~Is~Ger~~e~e~~~~~~~r~~g~F~R~~~LPe~Vd~e~I~A~~~~dGVLtIt 182 (220)
.+.+| ++++|+++++ .++|+ |.+ |+..+. ||. ..++...+ ++.|.|.
T Consensus 4 ~I~IP-----~~V~v~i~~~-~i~vk-Gp~---------------G~L~~~--~~~----~~v~i~~~-~~~i~v~ 50 (79)
T d1vqoe1 4 ELEIP-----EDVDAEQDHL-DITVE-GDN---------------GSVTRR--LWY----PDIDVSVD-GDTVVIE 50 (79)
T ss_dssp EEECC-----SSCEEEEETT-EEEEE-ETT---------------EEEEEE--CCC----TTCEEEEC-SSEEEEE
T ss_pred eeECC-----CCcEEEEeCC-EEEEE-cCC---------------eEEEEE--ccC----CeEEEEEc-CCEEEec
Confidence 45566 8899999998 79999 832 222233 332 24566788 8887776
No 12
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.38 E-value=15 Score=25.91 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.2
Q ss_pred CceEEEeccCCEEEEEEec
Q 040821 167 NGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK 185 (220)
..+.+.+. +|||+|+++.
T Consensus 38 ~d~D~e~~-~gvLti~~~~ 55 (112)
T d2fqla1 38 CIPDVELS-HGVMTLEIPA 55 (112)
T ss_dssp SSCEEECC-SSEEEEEETT
T ss_pred cceeeecc-CCEEEEEECC
Confidence 35778899 9999999975
No 13
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.59 E-value=48 Score=24.20 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=31.3
Q ss_pred ceEEEeccCCEEEEEEeccCCCCCCeeEEeccC-CCcchhhHHHHHHhh
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKS-LGCLAHAACLLICEK 215 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~~-~~~~~~~~~~~~~~~ 215 (220)
.|.-.+..||+|+|++--... .+..+|.|.. .+-+++.....+.+.
T Consensus 91 ~Vtf~id~nGil~V~A~d~~T--g~~~~i~I~~~~~~Ls~eEIek~i~e 137 (159)
T d1yuwa1 91 EVTFDIDANGILNVSAVDKST--GKENKITITNDKGRLSKEDIERMVQE 137 (159)
T ss_dssp EEEEEECTTCCEEEEEEETTT--CCEEEEEECCCSSCSCHHHHHHHHHH
T ss_pred EEEEEEcCCCeEEEEEEEcCC--CCeEEEEEecCCCCCCHHHHHHHHHH
Confidence 456677779999999875433 4566677765 456887776665543
No 14
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=29.05 E-value=21 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=20.5
Q ss_pred ceEEEeccCCEEEEEEeccCCCCCCeeEEecc
Q 040821 168 GFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199 (220)
Q Consensus 168 ~I~A~~~~dGVLtItlPK~e~~k~r~i~I~I~ 199 (220)
.|.-+|+.||+|+|++--.... +..+|.|+
T Consensus 82 ~Vtf~id~nGiL~V~A~d~~tg--~~~~i~i~ 111 (115)
T d1u00a2 82 RVTFQVDADGLLSVTAMEKSTG--VEASIQVK 111 (115)
T ss_dssp EEEEEECTTCCEEEEEEETTTC--CEEEEEEC
T ss_pred EEEEEccCCceEEEEEEECCCC--CEeEEEEe
Confidence 3556677799999998776544 34455554
No 15
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.35 E-value=20 Score=25.47 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=15.2
Q ss_pred CceEEEeccCCEEEEEEec
Q 040821 167 NGFKTAMDDAGVLTVTFTK 185 (220)
Q Consensus 167 e~I~A~~~~dGVLtItlPK 185 (220)
..+.+.+. +|||||+++.
T Consensus 32 ~d~D~e~~-~gvLti~f~~ 49 (119)
T d1ekga_ 32 EDYDVSFG-SGVLTVKLGG 49 (119)
T ss_dssp TTCEEEEE-TTEEEEECCT
T ss_pred cceeeecc-CCEEEEEECC
Confidence 46889999 9999999863
Done!