RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 040821
(220 letters)
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 53.0 bits (128), Expect = 1e-09
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNF- 155
K K F K +P G K E++ V +E + L+ G + K EE D ++F
Sbjct: 2 IKEDKDAFVVKLDVP-GFKPEELKVKVEDNRVLVKGKHE--KEEEDDHGLRSERSYRSFS 58
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
R F+LP+ +P+ K ++ D GVLTVT KL+P +KK R I
Sbjct: 59 RKFVLPENADPDKVKASLKD-GVLTVTVPKLEPPEKKPRRI 98
Score = 30.6 bits (70), Expect = 0.20
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 36 KKKEGDTTSQIIRME------FNLPAGLNPNGFKAAIDDEGLLTLTFEKLVP 81
K++E D + R F LP +P+ KA++ D G+LT+T KL P
Sbjct: 40 KEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASLKD-GVLTVTVPKLEP 90
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 40.4 bits (95), Expect = 5e-05
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGD-TSTLMCV-- 150
V WK FKA +P K ED+ V +E + L I K EE V
Sbjct: 1 RVDWKETPEAHVFKADVPGVKK-EDVKVEVEDGRVLRI--SGERKKEEEKKGDDWHRVER 57
Query: 151 -DGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
G+ R F LP+ + + K +++ GVLTVT K
Sbjct: 58 SSGRFVRRFRLPENADADEVKAFLEN-GVLTVTVPK 92
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 36.8 bits (86), Expect = 9e-04
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCVDGKNF 155
+ +A LP G K ED+ V +E L I G + + EE + G
Sbjct: 2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGV-LTISGEREEEEEEEENYLRRERSYGSFS 59
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
RSF LP+ V+P+ K ++++ GVLT+T K
Sbjct: 60 RSFRLPEDVDPDKIKASLEN-GVLTITLPK 88
Score = 31.0 bits (71), Expect = 0.12
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 36 KKKEGDTTSQIIRME---------FNLPAGLNPNGFKAAIDDEGLLTLTFEK 78
+++E + +R E F LP ++P+ KA++++ G+LT+T K
Sbjct: 38 REEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-GVLTITLPK 88
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 35.4 bits (82), Expect = 0.007
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIA 197
R+F LP+ V+P K + G+LTVT K +PE+KK + I
Sbjct: 104 RTFRLPEKVDPEVIKAKYKN-GLLTVTLPKAEPEEKKPKRIE 144
Score = 28.1 bits (63), Expect = 1.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 50 EFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVP 81
F LP ++P KA + GLLT+T K P
Sbjct: 105 TFRLPEKVDPEVIKAKYKN-GLLTVTLPKAEP 135
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 32.6 bits (75), Expect = 0.027
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 97 WKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNF- 155
W LP G K ED+ V +E L I + + F
Sbjct: 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDN-VLTISG-------KREEEEERERSYGEFE 51
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
RSF LP+ V+P K ++++ GVL +T K
Sbjct: 52 RSFELPEDVDPEKSKASLEN-GVLEITLPK 80
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 31.0 bits (71), Expect = 0.093
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 155 FRSFILPDGVNPNGFKTAMDDAGVLTVT 182
R + LP+GV+P+ +++ GVLT+
Sbjct: 53 TRRYQLPEGVDPDSVTSSLSSDGVLTIE 80
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 36 KKKEGDTTSQIIRMEF----NLPAGLNPNGFKAAIDDEGLLTLT 75
K +E + + EF LP G++P+ +++ +G+LT+
Sbjct: 37 KHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIE 80
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 28.5 bits (63), Expect = 3.3
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 151 DGKNFR----SFILPD-------GVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199
DG N R F L D G+ G + DD GV +KL E+KK R + K+
Sbjct: 136 DGANSRWSSDDFQLRDKLGGGNFGITFEGLRLQADDQGV--TQRSKLTAEQKKRRVVLKR 193
>gnl|CDD|131120 TIGR02065, ECX1, archaeal exosome-like complex exonuclease 1. This
family contains the archaeal protein orthologous to the
eukaryotic exosome protein Rrp41. It is somewhat more
distantly related to the bacterial protein ribonuclease
PH. An exosome-like complex has been demonstrated
experimentally for the Archaea in Sulfolobus
solfataricus, so members of this family are designated
exosome complex exonuclease 1, after usage in SwissProt
[Transcription, Degradation of RNA].
Length = 230
Score = 28.2 bits (63), Expect = 3.4
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 112 AGTKMEDMMVGIEGRKSLMIGICDLSKTE----EGDTSTLMCVDGKNFRSFILPDGVNPN 167
AG M D++VG+ K + + DLS+ E E D + L + P+
Sbjct: 143 AGIPMRDLVVGVAVGKVDGVVVLDLSEEEDMYGEADMPVAIMPKTGEITLLQLDGDLTPD 202
Query: 168 GFKTAMDDA 176
F+ A+D A
Sbjct: 203 EFRQALDLA 211
>gnl|CDD|220387 pfam09763, Sec3, Exocyst complex component Sec3. This entry is the
conserved middle and C-terminus of the Sec3 protein.
Sec3 binds to the C-terminal cytoplasmic domain of GLYT1
(glycine transporter protein 1). Sec3 is the exocyst
component that is closest to the plasma membrane docking
site and it serves as a spatial landmark in the plasma
membrane for incoming secretory vesicles. Sec3 is
recruited to the sites of polarised membrane growth
through its interaction with Rho1p, a small GTP-binding
protein.
Length = 691
Score = 28.1 bits (63), Expect = 4.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 91 EKVSVQWKSKKGVFHFKAHLPAGTK-MEDMMVGIEGRKS 128
E+ V KS+KGV F + P K +EDM+ E R
Sbjct: 459 EETKVSVKSRKGVLPFVRNFPVFAKRVEDMLSSAERRGL 497
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 26.3 bits (59), Expect = 5.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
RSF LP+ V+ K ++ GVL +T K
Sbjct: 66 RSFYLPN-VDEEEIKAKYEN-GVLKITLPK 93
>gnl|CDD|233231 TIGR01002, hlyII, beta-channel forming cytolysin. This family of
cytolytic pore-forming proteins includes alpha toxin
and leukocidin F and S subunits from Staphylococcus
aureus, hemolysin II of Bacillus cereus, and related
toxins [Cellular processes, Toxin production and
resistance].
Length = 312
Score = 27.4 bits (61), Expect = 5.4
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 2 VGIDEDGKLLTIISKVASAHKDSSVITSSL-FSFLKKKEGDTTSQIIRMEFNLPAGLNPN 60
++ +T+ A+ D IT S+ FSF+K K D + II+ N+ + N
Sbjct: 30 TSEEDIDDKITVYKSTATTSSDKLGITQSITFSFIKDKYYDKDTLIIKTAGNINSKYTKN 89
Query: 61 GFKAAI 66
Sbjct: 90 NPDGTN 95
>gnl|CDD|224352 COG1435, Tdk, Thymidine kinase [Nucleotide transport and
metabolism].
Length = 201
Score = 27.2 bits (61), Expect = 6.3
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 26 VITSSLFSFLKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDD 68
I +FS G T + R AG+ FK AID
Sbjct: 8 FIYGPMFS------GKTEELLRRARRYKEAGMKVLVFKPAIDT 44
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 26.0 bits (57), Expect = 6.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTV 181
R + LP GV+P +++ G+LTV
Sbjct: 57 RKYTLPPGVDPTAVTSSLSPDGILTV 82
>gnl|CDD|235901 PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.
Length = 236
Score = 26.7 bits (60), Expect = 9.2
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 100 KKGVFHFKAHLPAGTKMEDMM-VGIEGRKSLMIGICDLSK 138
K+ KA LPA ++D++ G MIG+ + ++
Sbjct: 22 KRIALRLKARLPASVDLDDLIQAG-------MIGLLEAAR 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,921,414
Number of extensions: 997616
Number of successful extensions: 739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 21
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)