RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040821
(220 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 55.4 bits (134), Expect = 4e-10
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 76 FEKLVPNHSETPSDLEKV---SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI- 131
F +VP S S+ + WK FKA LP G K E++ V +E L++
Sbjct: 24 FRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS 82
Query: 132 GICDLSKTEEGDTSTLM-CVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEK 190
G K ++ D + GK R F L + K +++ GVLTVT K + +K
Sbjct: 83 GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPKAEVKK 141
Query: 191 KKLRPIA 197
+++ I
Sbjct: 142 PEVKAIQ 148
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 51.1 bits (123), Expect = 9e-09
Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 9/120 (7%)
Query: 76 FEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICD 135
+K S +L V + G A L G E + + G+ L+I
Sbjct: 8 LQKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLA-GFNKEKIKARVSGQNELII---- 62
Query: 136 LS---KTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
+ E L + LP V + + + GVLT+ K
Sbjct: 63 -EAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 51.4 bits (122), Expect = 5e-08
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 29/175 (16%)
Query: 36 KKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKV-- 93
+ + + R LP ++ N +A I + +L + PN+ EK
Sbjct: 146 ACGDAAMSESVGR-SIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLA 204
Query: 94 --------------------SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGI 133
V + H + + +D+ V +G K + G+
Sbjct: 205 IQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGV 264
Query: 134 CDLSKTEEGDTSTLMCVDGKNF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLK 187
+ E + + + F ++F+ P+ V+ + + + D G++ V K
Sbjct: 265 TGKEEKTENASHSEH----REFYKAFVTPEVVDASKTQAEIVD-GLMVVEAPLFK 314
Score = 44.4 bits (104), Expect = 1e-05
Identities = 28/165 (16%), Positives = 53/165 (32%), Gaps = 12/165 (7%)
Query: 48 RMEFNLPAGLNPNGFKAAIDD-EGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHF 106
+ P N F++ + + + F + D K K G HF
Sbjct: 56 NLFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLK-DAYEVGKDGRLHF 114
Query: 107 KAHLPA-GTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNF-RSFILPDGV 164
K + K E++ + + K L++ + S ++ RS LP V
Sbjct: 115 KVYFNVKNFKAEEITIKADKNK-LVVRAQKSVACGDAAMS-------ESVGRSIPLPPSV 166
Query: 165 NPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAAC 209
+ N + + VL + +P K ++ +K L
Sbjct: 167 DRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPSEVQ 211
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 46.7 bits (111), Expect = 2e-07
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRS 157
+ G F + E++ V + G + + E G + R
Sbjct: 7 PTDPGYFSVLLDVK-HFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFH------RR 59
Query: 158 FILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPIAKK 199
+ LP GV+P +A+ GVL++ T + P A K
Sbjct: 60 YRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAAK 101
Score = 32.4 bits (74), Expect = 0.030
Identities = 10/50 (20%), Positives = 21/50 (42%)
Query: 36 KKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSE 85
+ E ++ + LP G++P +A+ EG+L++ S
Sbjct: 45 RPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASL 94
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 47.4 bits (113), Expect = 3e-07
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLMCV-- 150
+ A LP G ED+++ G +L I E + +
Sbjct: 58 PISIIEGDQHIKVIAWLP-GVNKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPE 115
Query: 151 DGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
+ + +R+ LP V ++ GVL+V K + KK I
Sbjct: 116 EEEIYRTIKLPATVKEENASAKFEN-GVLSVILPKAESSIKKGINI 160
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 44.0 bits (105), Expect = 2e-06
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 94 SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMI-GICDLSKTEEGDTSTLM-CVD 151
V K + F A LP G + V ++ L I G + E + + +
Sbjct: 6 RVDIKEEVNHFVLYADLP-GIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRY 63
Query: 152 GKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTK 185
G R F LPD + +G A + GVL + K
Sbjct: 64 GSFHRRFALPDSADADGITAAGRN-GVLEIRIPK 96
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 43.3 bits (102), Expect = 4e-06
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 98 KSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRS 157
+S + F + ED+ V ++ + G + + + G S R
Sbjct: 8 RSDRDKFVIFLDVK-HFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFH------RR 60
Query: 158 FILPDGVNPNGFKTAMDDAGVLTVTFTKLK---PEKKKLRPI 196
+ LP V+ + ++ G+LT + K+ R I
Sbjct: 61 YRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAI 102
Score = 33.3 bits (76), Expect = 0.015
Identities = 8/54 (14%), Positives = 24/54 (44%)
Query: 36 KKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSD 89
++ + S+ + LP+ ++ + ++ +G+LT + K+ S+
Sbjct: 46 RQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSE 99
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 44.6 bits (105), Expect = 5e-06
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 81 PNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTE 140
P+ PS + + + +K F + E++ V + G + G + + E
Sbjct: 52 PSFLRAPSWFDTGLSEMRLEKDRFSVNLDVK-HFSPEELKVKVLGDVIEVHGKHEERQDE 110
Query: 141 EGDTSTLMCVDGKNF-RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
G S + F R + +P V+P +++ GVLTV + K R I
Sbjct: 111 HGFIS-------REFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR-KQVSGPERTI 159
Score = 31.8 bits (72), Expect = 0.089
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 36 KKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSE 85
++ E S+ ++ +PA ++P +++ +G+LT+ + + E
Sbjct: 107 RQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE 156
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 6e-04
Identities = 29/249 (11%), Positives = 57/249 (22%), Gaps = 94/249 (37%)
Query: 1 MVGIDEDGKLLTIISKVASAHKDSSVITSSLFSF----LKKKEGDTTSQIIRMEFNLPAG 56
++G GK T + V F L K ++ ++ M L
Sbjct: 158 VLGS---GK--TWV--ALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 57 LNPNGFKAAIDDEGLLTLTFEKLVPNHSETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKM 116
++PN + + S + + + + K +
Sbjct: 209 IDPN---------------WTSRSDHSSNIKLRIHSIQ---AELRRLLKSKPY------- 243
Query: 117 EDMMVGIEGRKSLMI--GICDLSKTEEGDTSTLMCVDGKNFRSFIL--------PDGVNP 166
L++ + + + N IL D ++
Sbjct: 244 ---------ENCLLVLLNVQNAK-----------AWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 167 NGFK-TAMDD--------------AGVLTVTFTKLKPEKKKLRPIAKKSLGCLAHAACLL 211
++D L L E P + +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--------RRLS---I 332
Query: 212 ICEKISDGI 220
I E I DG+
Sbjct: 333 IAESIRDGL 341
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 36.3 bits (84), Expect = 0.001
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 156 RSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKK 192
R + +P V+P ++M GVLTV + + +
Sbjct: 53 RKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
Score = 30.1 bits (68), Expect = 0.13
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 36 KKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSE 85
++ E S+ ++ +PA ++P +++ +G+LT+ + + E
Sbjct: 40 RQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.003
Identities = 40/242 (16%), Positives = 62/242 (25%), Gaps = 107/242 (44%)
Query: 1 MVGID--EDGKLLTIISKV-----ASAH--------KDSSVIT---SSLFSF------LK 36
M+ I ++ ++K A + V++ SL+ K
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 37 KKEGDTTSQI--------IRMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSE--T 86
G S+I F LP P HS
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRF-LPVA-----------------------SPFHSHLLV 433
Query: 87 P------SDLEKVSVQWKSKK---GVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDL- 136
P DL K +V + +K V+ G D+ S+ I D
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTF----DG---SDLR---VLSGSISERIVDCI 483
Query: 137 ----------SKTEE--------GDTSTLMC-----VDGKNFRSFILPDGVNPN-----G 168
++ + G S L DG R I+ ++ N G
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR-VIVAGTLDINPDDDYG 542
Query: 169 FK 170
FK
Sbjct: 543 FK 544
Score = 33.5 bits (76), Expect = 0.054
Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 70/190 (36%)
Query: 56 GLNPNGFKAAIDDEGLLTLTFEKLV----PNHSETPSDLEKVSVQWKSKKGVFH--FKAH 109
G P ++ + +G + + LV +++ K+ +F + +
Sbjct: 257 GFTPGELRSYL--KGATGHS-QGLVTAVAIAETDSWESFFVSVR--KAITVLFFIGVRCY 311
Query: 110 -------LPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPD 162
LP + + EG S M+ I +L++ + V+ N LP
Sbjct: 312 EAYPNTSLPPSILEDSLENN-EGVPSPMLSISNLTQEQ-----VQDYVNKTNSH---LPA 362
Query: 163 G-------VN-PNGFKTAMDDAGVLT----------VTFTKLK----------P-EKKKL 193
G VN V++ +T K K P ++KL
Sbjct: 363 GKQVEISLVNGAKNL--------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 194 R------PIA 197
+ P+A
Sbjct: 415 KFSNRFLPVA 424
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 33.9 bits (78), Expect = 0.007
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 112 AGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVDGKNFRSFILPDGVNPNGFKT 171
+++ V + + G + E G S R + LP GV+P +
Sbjct: 16 NHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFT------RKYTLPPGVDPTQVSS 69
Query: 172 AMDDAGVLTVT 182
++ G LTV
Sbjct: 70 SLSPEGTLTVE 80
Score = 28.1 bits (63), Expect = 0.68
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 36 KKKEGDTTSQIIRMEFN----LPAGLNPNGFKAAIDDEGLLTLT 75
K I F LP G++P +++ EG LT+
Sbjct: 37 KHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVE 80
>1n67_A Clumping factor; DEV-IGG, IGG, immunoglobulin, IGSF,
fibrinongen-binding, cell adhesion; 1.90A
{Staphylococcus aureus} SCOP: b.2.3.4 b.2.3.4 PDB:
2vr3_A
Length = 359
Score = 30.1 bits (67), Expect = 0.50
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 24/81 (29%)
Query: 38 KEGDTTSQIIRMEFNLPAGLNPNGF-----------------KAAIDDEGLLTLTFEKLV 80
+GDT + +P LN NG ID +G + TF V
Sbjct: 69 VKGDT------FKITVPKELNLNGVTSTAKVPPIMAGDQVLANGVIDSDGNVIYTFTDYV 122
Query: 81 PNHSETPSDLEKVSVQWKSKK 101
+ + L + +
Sbjct: 123 NTKDDVKATLT-MPAYIDPEN 142
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response,
innate immunity, secreted, sugar binding protein; NMR
{Plodia interpunctella}
Length = 130
Score = 28.4 bits (63), Expect = 0.99
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 40 GDTTSQIIRMEFNLPA----GLNPNGFKAAIDDEGLLTLTFE 77
G SQ ++ +P+ + P G + +I D+G F
Sbjct: 1 GAMGSQPRAQQYVVPSAKLEAIYPRGLRVSIPDDGFSLFAFH 42
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor,
sugar bindi protein; 1.58A {Plodia interpunctella} PDB:
3aqz_A* 3aqx_A* 2rqe_A
Length = 106
Score = 27.5 bits (61), Expect = 1.5
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 57 LNPNGFKAAIDDEGLLTLTF 76
+ P G + +I D+G F
Sbjct: 13 IYPKGLRVSIPDDGFSLFAF 32
>2qk7_A Gamma-hemolysin component A; pore-forming toxin, beta-barrel,
protein-protein interaction molecular plasticity,
covalent complex; 2.40A {Staphylococcus aureus subsp}
PDB: 3b07_B
Length = 288
Score = 26.7 bits (58), Expect = 6.1
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 2 VGIDEDGKLLTIISKVASAHKDSSVITSSL-FSFLKKKEGDTTSQIIRMEFNLPAGL 57
I++ G+ II + I ++ F F+K K+ + + +++M+ + +
Sbjct: 10 NKIEDIGQGAEIIKRTQDITSKRLAICQNIQFDFVKDKKYNKDALVVKMQGFISSRT 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,276,698
Number of extensions: 187077
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 26
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)