RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 040821
         (220 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 7/126 (5%)

Query: 76  FEKLVPNHSETPSDLEKVS---VQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIG 132
           F  +VP  S   S+    +   + WK       FKA LP G K E++ V +E    L++ 
Sbjct: 23  FRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLP-GVKKEEVKVEVEDGNVLVVS 81

Query: 133 ICDLSKTEE--GDTSTLMCVDGKNFRSFILPDGVNPNGFKTAMDDAGVLTVTFTKLKPEK 190
                + E+       +    GK  R F L +       K  +++ GVLTVT  K + +K
Sbjct: 82  GERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPKAEVKK 140

Query: 191 KKLRPI 196
            +++ I
Sbjct: 141 PEVKAI 146



 Score = 24.7 bits (53), Expect = 7.1
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 48  RMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSET 86
              F L         KA +++ G+LT+T  K      E 
Sbjct: 106 VRRFRLLEDAKVEEVKAGLEN-GVLTVTVPKAEVKKPEV 143


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 104 FHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDTSTLMCVD---GKNFRSFIL 160
               A LP G   ED+++   G   L I               +        + +R+  L
Sbjct: 22  IKVIAWLP-GVNKEDIILNAVGDT-LEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKL 79

Query: 161 PDGVNPNGFKTAMDDAGVLTVTFTKLKPEKKKLRPI 196
           P  V         ++ GVL+V   K +   KK   I
Sbjct: 80  PATVKEENASAKFEN-GVLSVILPKAESSIKKGINI 114


>d1n67a1 b.2.3.4 (A:229-369) Clumping factor A {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 141

 Score = 29.4 bits (66), Expect = 0.19
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 24/83 (28%)

Query: 20 AHKDSSVITSSLFSFLKK-KEGDTTSQIIRMEFNLPAGLNPNGF---------------- 62
           H+   V  +  FS      +GDT       +  +P  LN NG                 
Sbjct: 23 PHQAGYVKLNYGFSVPNSAVKGDT------FKITVPKELNLNGVTSTAKVPPIMAGDQVL 76

Query: 63 -KAAIDDEGLLTLTFEKLVPNHS 84
              ID +G +  TF   V    
Sbjct: 77 ANGVIDSDGNVIYTFTDYVNTKD 99


>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia
           coli [TaxId: 562]}
          Length = 140

 Score = 27.9 bits (62), Expect = 0.54
 Identities = 15/123 (12%), Positives = 38/123 (30%), Gaps = 12/123 (9%)

Query: 35  LKKKEGDTTSQIIRMEFNLPAGLNPNGFKAAIDD------EGLLTLTFEKLVPNH----S 84
           LK +     S  +RM+ +    + P+     + D      +  L L+  K   +     +
Sbjct: 7   LKTQLATAAS--LRMDKHRSNSVGPHDLYFTLLDDYLHVVDTALWLSGGKASLDGGTLLT 64

Query: 85  ETPSDLEKVSVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRKSLMIGICDLSKTEEGDT 144
               ++      + +         H  AG++ E +    +G    +  + +  +      
Sbjct: 65  NDAGEMLFAEHHFSAGPLQITTCMHRRAGSQRETVQAVTDGALIDITDMREWREERGQGV 124

Query: 145 STL 147
              
Sbjct: 125 VHK 127


>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase
           {Cow (Bos taurus), alpha1 [TaxId: 9913]}
          Length = 212

 Score = 26.8 bits (58), Expect = 1.8
 Identities = 10/137 (7%), Positives = 33/137 (24%), Gaps = 22/137 (16%)

Query: 40  GDTTSQII-RMEFNLPAGLNPNGFKAAIDDEGLLTLTFEKLVPNHSETP-----SDLEKV 93
           GD+T  ++ R+E      + P              +    +  N+           ++ +
Sbjct: 70  GDSTQHVLWRLENGELEHIRP-------------KIVVVWVGTNNHGHTAEQVTGGIKAI 116

Query: 94  SVQWKSKKGVFHFKAHLPAGTKMEDMMVGIEGRK---SLMIGICDLSKTEEGDTSTLMCV 150
                 ++                   +  + R+    +   +    +    D       
Sbjct: 117 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAGHPRAHFLDADPGFVH 176

Query: 151 DGKNFRSFILPDGVNPN 167
                    + D ++ +
Sbjct: 177 SDGTISHHDMYDYLHLS 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 799,066
Number of extensions: 35655
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 7
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)