Query 040822
Match_columns 158
No_of_seqs 130 out of 1393
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:09:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0023 Alcohol dehydrogenase, 99.9 6.1E-25 1.3E-29 153.1 12.9 89 50-139 269-358 (360)
2 COG1064 AdhP Zn-dependent alco 99.9 3.9E-24 8.5E-29 152.4 13.3 86 50-136 249-338 (339)
3 COG1062 AdhC Zn-dependent alco 99.8 1.4E-19 3E-24 127.7 10.2 82 50-133 275-364 (366)
4 KOG0024 Sorbitol dehydrogenase 99.8 2E-18 4.3E-23 121.0 9.3 84 50-134 263-351 (354)
5 KOG1197 Predicted quinone oxid 99.8 3.1E-18 6.8E-23 116.5 7.4 146 4-156 61-225 (336)
6 COG0604 Qor NADPH:quinone redu 99.7 5.3E-17 1.1E-21 117.5 5.1 148 5-157 55-222 (326)
7 PLN02178 cinnamyl-alcohol dehy 99.7 7.4E-15 1.6E-19 108.5 14.3 84 53-137 266-350 (375)
8 PLN02586 probable cinnamyl alc 99.6 7.3E-15 1.6E-19 108.0 13.7 82 53-135 271-353 (360)
9 KOG0022 Alcohol dehydrogenase, 99.6 4.4E-15 9.4E-20 104.0 10.9 80 53-134 287-374 (375)
10 PLN02514 cinnamyl-alcohol dehy 99.6 3.6E-14 7.8E-19 104.3 14.1 83 53-136 268-351 (357)
11 TIGR02822 adh_fam_2 zinc-bindi 99.6 3.1E-14 6.8E-19 103.5 13.4 83 50-133 244-328 (329)
12 TIGR01202 bchC 2-desacetyl-2-h 99.6 6.7E-14 1.4E-18 100.9 12.1 83 50-133 221-307 (308)
13 cd08281 liver_ADH_like1 Zinc-d 99.5 4.9E-13 1.1E-17 98.7 12.9 81 51-132 281-370 (371)
14 PRK09880 L-idonate 5-dehydroge 99.5 6.7E-13 1.4E-17 97.0 12.7 83 50-134 256-342 (343)
15 cd08239 THR_DH_like L-threonin 99.5 1.2E-12 2.6E-17 95.4 13.6 81 53-135 255-339 (339)
16 PRK10309 galactitol-1-phosphat 99.4 5.4E-12 1.2E-16 92.4 13.3 85 50-135 250-346 (347)
17 PLN02827 Alcohol dehydrogenase 99.4 4.5E-12 9.8E-17 93.9 12.4 84 51-136 285-377 (378)
18 TIGR03451 mycoS_dep_FDH mycoth 99.4 7.7E-12 1.7E-16 91.9 13.4 83 50-133 266-356 (358)
19 cd08237 ribitol-5-phosphate_DH 99.4 4E-12 8.6E-17 92.9 11.5 84 51-136 247-340 (341)
20 COG1063 Tdh Threonine dehydrog 99.4 5.1E-12 1.1E-16 92.6 11.4 83 50-133 259-348 (350)
21 PLN02740 Alcohol dehydrogenase 99.4 1.6E-11 3.5E-16 91.0 13.8 78 54-134 294-380 (381)
22 TIGR03201 dearomat_had 6-hydro 99.4 1.3E-11 2.8E-16 90.5 13.0 62 71-133 284-347 (349)
23 TIGR02819 fdhA_non_GSH formald 99.4 1.7E-12 3.7E-17 96.5 8.0 44 5-49 59-102 (393)
24 cd08291 ETR_like_1 2-enoyl thi 99.4 2.3E-11 5E-16 88.2 12.1 61 71-133 256-323 (324)
25 cd08296 CAD_like Cinnamyl alco 99.3 5E-11 1.1E-15 86.8 13.3 62 71-133 271-332 (333)
26 KOG0025 Zn2+-binding dehydroge 99.3 4.2E-11 9.1E-16 83.4 11.9 85 50-135 253-352 (354)
27 cd08230 glucose_DH Glucose deh 99.3 5.4E-11 1.2E-15 87.4 11.4 61 71-134 287-354 (355)
28 PF08240 ADH_N: Alcohol dehydr 99.3 3.3E-12 7.1E-17 78.5 4.1 50 3-53 27-76 (109)
29 cd05283 CAD1 Cinnamyl alcohol 99.3 1.5E-10 3.1E-15 84.5 13.3 60 73-133 277-336 (337)
30 TIGR02818 adh_III_F_hyde S-(hy 99.3 7.7E-12 1.7E-16 92.3 6.3 46 5-51 53-98 (368)
31 TIGR03366 HpnZ_proposed putati 99.3 4.6E-11 1E-15 85.1 10.1 41 10-51 1-47 (280)
32 cd08233 butanediol_DH_like (2R 99.3 1.5E-10 3.2E-15 84.9 12.9 80 53-133 265-350 (351)
33 cd08301 alcohol_DH_plants Plan 99.3 2E-10 4.4E-15 84.8 12.5 77 54-133 283-368 (369)
34 cd08292 ETR_like_2 2-enoyl thi 99.2 1.4E-11 3E-16 89.1 5.4 140 5-156 56-218 (324)
35 cd08277 liver_alcohol_DH_like 99.2 4.5E-10 9.8E-15 82.9 13.2 77 54-133 280-364 (365)
36 cd08238 sorbose_phosphate_red 99.2 5.5E-10 1.2E-14 83.6 13.1 51 87-138 318-371 (410)
37 PLN03154 putative allyl alcoho 99.2 3.5E-10 7.7E-15 83.0 11.8 85 52-137 250-347 (348)
38 cd08300 alcohol_DH_class_III c 99.2 4.3E-11 9.4E-16 88.3 6.1 44 6-50 55-98 (368)
39 cd08256 Zn_ADH2 Alcohol dehydr 99.2 1.5E-10 3.2E-15 84.8 7.9 33 6-38 61-95 (350)
40 cd08274 MDR9 Medium chain dehy 99.1 1.8E-09 3.8E-14 79.0 12.5 58 76-134 291-349 (350)
41 PRK10083 putative oxidoreducta 99.1 4.1E-09 8.8E-14 76.9 13.1 48 89-136 287-338 (339)
42 cd05284 arabinose_DH_like D-ar 99.1 4.3E-09 9.4E-14 76.7 13.1 58 76-134 282-339 (340)
43 cd08293 PTGR2 Prostaglandin re 99.1 1.5E-10 3.2E-15 84.6 5.1 137 5-156 66-234 (345)
44 PRK09422 ethanol-active dehydr 99.1 9.4E-09 2E-13 74.9 13.9 49 87-135 288-336 (338)
45 cd08231 MDR_TM0436_like Hypoth 99.1 9.9E-10 2.2E-14 80.8 8.6 36 5-40 52-93 (361)
46 cd08235 iditol_2_DH_like L-idi 99.0 8E-10 1.7E-14 80.7 6.9 34 6-39 52-85 (343)
47 cd08283 FDH_like_1 Glutathione 99.0 1.3E-09 2.9E-14 81.0 8.2 34 6-39 53-86 (386)
48 cd05278 FDH_like Formaldehyde 99.0 2.4E-09 5.1E-14 78.3 8.9 34 5-38 52-85 (347)
49 cd08297 CAD3 Cinnamyl alcohol 99.0 1.8E-08 3.8E-13 73.6 13.3 60 75-135 282-341 (341)
50 cd08254 hydroxyacyl_CoA_DH 6-h 99.0 1.7E-08 3.7E-13 73.4 13.0 47 88-134 291-337 (338)
51 cd08266 Zn_ADH_like1 Alcohol d 99.0 2.3E-08 4.9E-13 72.6 13.1 48 87-134 293-341 (342)
52 cd08285 NADP_ADH NADP(H)-depen 99.0 2E-09 4.3E-14 78.9 7.6 34 6-39 52-85 (351)
53 cd08240 6_hydroxyhexanoate_dh_ 99.0 2.4E-08 5.2E-13 73.2 12.8 57 76-133 291-348 (350)
54 cd08244 MDR_enoyl_red Possible 99.0 1.1E-09 2.4E-14 79.2 5.6 143 5-157 57-222 (324)
55 cd08278 benzyl_alcohol_DH Benz 99.0 2.9E-09 6.3E-14 78.6 7.6 34 5-38 53-86 (365)
56 cd05282 ETR_like 2-enoyl thioe 98.9 1.5E-09 3.2E-14 78.5 5.5 141 5-157 54-218 (323)
57 cd08261 Zn_ADH7 Alcohol dehydr 98.9 2.8E-09 6.1E-14 77.7 6.8 33 6-38 52-84 (337)
58 cd08287 FDH_like_ADH3 formalde 98.9 5.7E-09 1.2E-13 76.3 8.1 32 6-37 52-83 (345)
59 cd08284 FDH_like_2 Glutathione 98.9 6.7E-09 1.4E-13 75.9 8.2 33 7-39 53-85 (344)
60 cd08290 ETR 2-enoyl thioester 98.9 8.9E-09 1.9E-13 75.1 8.4 142 7-156 63-231 (341)
61 cd05285 sorbitol_DH Sorbitol d 98.9 1.1E-08 2.4E-13 74.8 8.8 43 6-49 53-95 (343)
62 cd08270 MDR4 Medium chain dehy 98.9 7.6E-08 1.6E-12 69.1 12.9 58 76-134 242-304 (305)
63 cd05279 Zn_ADH1 Liver alcohol 98.9 1.2E-08 2.6E-13 75.3 9.0 35 6-40 52-86 (365)
64 cd08282 PFDH_like Pseudomonas 98.9 8.3E-09 1.8E-13 76.4 8.1 34 6-39 52-85 (375)
65 cd08265 Zn_ADH3 Alcohol dehydr 98.9 1.1E-08 2.4E-13 76.0 8.8 44 5-49 85-128 (384)
66 cd08298 CAD2 Cinnamyl alcohol 98.9 6.3E-08 1.4E-12 70.3 12.5 46 87-132 283-328 (329)
67 cd08262 Zn_ADH8 Alcohol dehydr 98.9 8.3E-08 1.8E-12 70.1 13.0 47 87-133 291-340 (341)
68 cd08263 Zn_ADH10 Alcohol dehyd 98.9 1.1E-08 2.4E-13 75.6 8.2 34 5-38 51-87 (367)
69 cd05188 MDR Medium chain reduc 98.9 5.6E-09 1.2E-13 73.4 6.5 36 5-40 27-62 (271)
70 PRK05396 tdh L-threonine 3-deh 98.9 9.2E-09 2E-13 75.2 7.5 35 6-40 56-90 (341)
71 cd08269 Zn_ADH9 Alcohol dehydr 98.9 1.5E-08 3.2E-13 72.9 8.1 136 7-156 51-208 (312)
72 cd08299 alcohol_DH_class_I_II_ 98.9 1.4E-08 3E-13 75.2 8.0 45 6-51 59-103 (373)
73 PRK13771 putative alcohol dehy 98.8 1.4E-07 3.1E-12 68.6 12.9 58 76-134 274-332 (334)
74 TIGR02817 adh_fam_1 zinc-bindi 98.8 6.3E-09 1.4E-13 75.7 5.7 50 5-54 56-106 (336)
75 cd08236 sugar_DH NAD(P)-depend 98.8 9E-09 1.9E-13 75.2 6.2 33 7-39 52-84 (343)
76 cd08255 2-desacetyl-2-hydroxye 98.8 4E-08 8.7E-13 69.7 9.3 37 3-39 16-52 (277)
77 cd08259 Zn_ADH5 Alcohol dehydr 98.8 1.6E-07 3.4E-12 68.1 12.6 47 87-133 284-331 (332)
78 cd08279 Zn_ADH_class_III Class 98.8 2.4E-08 5.2E-13 73.7 8.4 35 5-39 51-85 (363)
79 PTZ00354 alcohol dehydrogenase 98.8 1.9E-07 4.2E-12 67.7 12.8 48 92-139 284-332 (334)
80 TIGR00692 tdh L-threonine 3-de 98.8 1.8E-08 3.8E-13 73.6 7.3 34 6-39 54-87 (340)
81 cd08286 FDH_like_ADH2 formalde 98.8 3.1E-08 6.8E-13 72.4 8.6 33 7-39 54-86 (345)
82 cd08251 polyketide_synthase po 98.8 9.1E-09 2E-13 73.4 5.4 142 5-156 35-199 (303)
83 cd08294 leukotriene_B4_DH_like 98.8 6.7E-09 1.5E-13 75.3 4.6 133 6-156 58-221 (329)
84 PRK10754 quinone oxidoreductas 98.8 7.2E-09 1.6E-13 75.2 4.6 140 6-156 56-219 (327)
85 cd08248 RTN4I1 Human Reticulon 98.8 3E-08 6.6E-13 72.5 7.4 141 5-156 71-237 (350)
86 TIGR02825 B4_12hDH leukotriene 98.8 8.5E-09 1.8E-13 74.9 4.2 133 7-156 57-217 (325)
87 cd08258 Zn_ADH4 Alcohol dehydr 98.8 3.5E-08 7.6E-13 71.2 7.2 34 6-39 54-87 (306)
88 cd08276 MDR7 Medium chain dehy 98.8 4.6E-07 1E-11 65.7 13.0 59 75-134 276-335 (336)
89 cd08246 crotonyl_coA_red croto 98.7 2.1E-08 4.5E-13 74.7 5.4 32 9-40 83-114 (393)
90 cd08264 Zn_ADH_like2 Alcohol d 98.7 4.1E-07 8.8E-12 66.0 11.6 33 6-38 53-85 (325)
91 cd08245 CAD Cinnamyl alcohol d 98.7 5.8E-07 1.3E-11 65.3 12.4 46 87-132 284-329 (330)
92 cd05281 TDH Threonine dehydrog 98.7 1.1E-07 2.3E-12 69.6 8.3 34 6-39 56-89 (341)
93 cd08253 zeta_crystallin Zeta-c 98.7 2.5E-08 5.4E-13 71.8 4.6 35 5-39 55-89 (325)
94 cd05195 enoyl_red enoyl reduct 98.7 5.3E-08 1.2E-12 68.9 5.9 139 7-156 27-189 (293)
95 TIGR01751 crot-CoA-red crotony 98.7 8.2E-08 1.8E-12 71.7 6.8 40 10-50 80-119 (398)
96 cd08272 MDR6 Medium chain dehy 98.6 6.8E-08 1.5E-12 69.7 5.9 141 5-156 55-221 (326)
97 cd08247 AST1_like AST1 is a cy 98.6 1.4E-07 2.9E-12 69.3 7.4 33 7-39 58-91 (352)
98 cd08249 enoyl_reductase_like e 98.6 6.3E-08 1.4E-12 70.8 5.5 33 7-39 54-86 (339)
99 cd08260 Zn_ADH6 Alcohol dehydr 98.6 1.1E-07 2.4E-12 69.5 6.6 32 6-37 53-84 (345)
100 cd08242 MDR_like Medium chain 98.6 1.5E-06 3.2E-11 63.0 11.8 42 91-133 273-317 (319)
101 cd08268 MDR2 Medium chain dehy 98.6 1.4E-07 3E-12 68.1 6.0 34 6-39 56-89 (328)
102 cd08295 double_bond_reductase_ 98.6 1.2E-07 2.6E-12 69.3 5.7 136 6-156 66-231 (338)
103 cd08250 Mgc45594_like Mgc45594 98.6 1.2E-07 2.7E-12 68.7 5.6 35 5-39 58-92 (329)
104 smart00829 PKS_ER Enoylreducta 98.6 9.2E-08 2E-12 67.6 4.6 33 7-39 23-55 (288)
105 cd05286 QOR2 Quinone oxidoredu 98.6 5.5E-08 1.2E-12 69.8 3.5 138 6-156 53-215 (320)
106 cd05280 MDR_yhdh_yhfp Yhdh and 98.6 2.9E-06 6.4E-11 61.3 12.4 32 5-38 55-86 (325)
107 cd05276 p53_inducible_oxidored 98.5 3.9E-06 8.4E-11 60.3 12.0 34 5-38 55-88 (323)
108 TIGR02824 quinone_pig3 putativ 98.5 1.8E-07 3.9E-12 67.4 4.7 35 5-39 55-89 (325)
109 cd08234 threonine_DH_like L-th 98.5 3.8E-07 8.1E-12 66.4 5.8 33 6-38 51-83 (334)
110 cd08252 AL_MDR Arginate lyase 98.5 3.6E-07 7.7E-12 66.5 5.6 47 7-53 59-106 (336)
111 cd08267 MDR1 Medium chain dehy 98.5 1.2E-06 2.6E-11 63.1 8.2 139 7-156 58-218 (319)
112 cd08271 MDR5 Medium chain dehy 98.4 4.3E-07 9.3E-12 65.6 5.7 138 8-156 57-219 (325)
113 cd08243 quinone_oxidoreductase 98.4 4.3E-07 9.4E-12 65.4 5.0 32 6-39 55-86 (320)
114 cd08289 MDR_yhfp_like Yhfp put 98.4 4.7E-07 1E-11 65.6 4.9 32 6-39 56-87 (326)
115 TIGR02823 oxido_YhdH putative 98.4 1.2E-05 2.6E-10 58.2 11.8 41 94-134 282-322 (323)
116 PLN02702 L-idonate 5-dehydroge 98.3 9.9E-07 2.1E-11 65.1 5.0 44 6-50 72-115 (364)
117 cd08241 QOR1 Quinone oxidoredu 98.3 9.3E-07 2E-11 63.5 4.6 33 7-39 57-89 (323)
118 cd08232 idonate-5-DH L-idonate 98.3 1.3E-06 2.7E-11 63.8 4.7 41 6-47 52-92 (339)
119 cd05288 PGDH Prostaglandin deh 98.2 2.3E-06 4.9E-11 62.1 5.1 30 7-38 64-93 (329)
120 KOG1198 Zinc-binding oxidoredu 98.2 3.8E-06 8.3E-11 61.6 5.8 143 6-157 64-236 (347)
121 cd08288 MDR_yhdh Yhdh putative 98.2 7.9E-05 1.7E-09 54.0 12.5 43 92-134 281-323 (324)
122 PF13602 ADH_zinc_N_2: Zinc-bi 98.0 3.6E-05 7.8E-10 48.2 6.1 44 90-133 83-127 (127)
123 COG2130 Putative NADP-dependen 97.7 0.00093 2E-08 47.8 10.5 87 50-136 239-339 (340)
124 cd08273 MDR8 Medium chain dehy 97.7 5.4E-05 1.2E-09 55.0 4.3 34 6-39 56-89 (331)
125 KOG1202 Animal-type fatty acid 97.5 2.9E-05 6.3E-10 64.1 0.2 78 75-156 1553-1635(2376)
126 cd05289 MDR_like_2 alcohol deh 97.4 0.00028 6E-09 50.4 4.5 34 6-39 58-91 (309)
127 cd08275 MDR3 Medium chain dehy 97.4 0.00024 5.3E-09 51.5 4.2 34 6-39 55-88 (337)
128 TIGR02819 fdhA_non_GSH formald 97.3 0.0012 2.6E-08 49.6 7.4 86 48-135 287-390 (393)
129 cd08295 double_bond_reductase_ 97.2 0.0019 4.1E-08 47.3 7.4 85 49-134 240-337 (338)
130 TIGR01751 crot-CoA-red crotony 97.1 0.0036 7.9E-08 47.0 8.0 86 49-135 299-387 (398)
131 cd08246 crotonyl_coA_red croto 97.1 0.0037 7.9E-08 46.8 7.9 84 49-133 304-391 (393)
132 cd08231 MDR_TM0436_like Hypoth 97.1 0.0042 9.1E-08 45.9 7.8 84 49-134 269-360 (361)
133 COG0604 Qor NADPH:quinone redu 97.0 0.0061 1.3E-07 44.7 8.1 85 49-134 230-325 (326)
134 TIGR02818 adh_III_F_hyde S-(hy 96.8 0.012 2.6E-07 43.8 8.4 83 50-134 276-367 (368)
135 TIGR02825 B4_12hDH leukotriene 96.6 0.017 3.6E-07 42.1 7.6 84 49-133 226-324 (325)
136 cd08260 Zn_ADH6 Alcohol dehydr 96.5 0.021 4.5E-07 41.9 7.8 84 49-133 253-343 (345)
137 KOG1196 Predicted NAD-dependen 96.5 0.02 4.3E-07 41.2 7.1 64 90-157 166-234 (343)
138 cd08261 Zn_ADH7 Alcohol dehydr 96.4 0.032 7E-07 40.7 8.5 84 50-134 248-336 (337)
139 cd08283 FDH_like_1 Glutathione 96.4 0.023 5E-07 42.5 7.8 84 49-133 295-384 (386)
140 cd08300 alcohol_DH_class_III c 96.4 0.029 6.3E-07 41.7 8.1 82 50-133 277-367 (368)
141 cd08284 FDH_like_2 Glutathione 96.3 0.033 7.1E-07 40.7 7.9 83 49-133 255-342 (344)
142 cd08294 leukotriene_B4_DH_like 96.3 0.023 4.9E-07 41.2 7.0 85 49-134 230-328 (329)
143 PF00107 ADH_zinc_N: Zinc-bind 96.3 0.011 2.5E-07 36.9 4.7 52 48-100 77-130 (130)
144 cd08282 PFDH_like Pseudomonas 96.3 0.033 7.2E-07 41.5 7.8 83 49-133 274-373 (375)
145 KOG1197 Predicted quinone oxid 96.2 0.0085 1.8E-07 42.1 4.2 87 50-138 235-333 (336)
146 cd08287 FDH_like_ADH3 formalde 96.2 0.035 7.5E-07 40.7 7.7 82 50-133 258-343 (345)
147 cd08263 Zn_ADH10 Alcohol dehyd 96.1 0.036 7.7E-07 41.1 7.5 84 49-133 276-366 (367)
148 PRK05396 tdh L-threonine 3-deh 96.1 0.049 1.1E-06 39.9 7.9 86 49-135 252-340 (341)
149 cd08286 FDH_like_ADH2 formalde 96.1 0.061 1.3E-06 39.4 8.3 84 49-134 255-344 (345)
150 cd08256 Zn_ADH2 Alcohol dehydr 96.1 0.04 8.6E-07 40.5 7.3 82 49-132 263-349 (350)
151 cd08292 ETR_like_2 2-enoyl thi 96.0 0.039 8.4E-07 39.9 7.2 84 49-133 227-323 (324)
152 TIGR03366 HpnZ_proposed putati 96.0 0.016 3.5E-07 41.4 5.0 66 48-114 206-279 (280)
153 cd08235 iditol_2_DH_like L-idi 96.0 0.057 1.2E-06 39.4 8.0 83 49-133 254-342 (343)
154 cd08232 idonate-5-DH L-idonate 96.0 0.072 1.6E-06 38.9 8.5 84 49-134 251-338 (339)
155 cd08244 MDR_enoyl_red Possible 96.0 0.078 1.7E-06 38.3 8.4 84 50-134 231-323 (324)
156 KOG1198 Zinc-binding oxidoredu 95.9 0.12 2.5E-06 38.4 9.0 49 87-135 296-345 (347)
157 cd08285 NADP_ADH NADP(H)-depen 95.8 0.055 1.2E-06 39.8 7.2 86 49-134 255-350 (351)
158 PLN02702 L-idonate 5-dehydroge 95.8 0.094 2E-06 38.8 8.5 84 49-134 274-363 (364)
159 TIGR00692 tdh L-threonine 3-de 95.5 0.16 3.4E-06 37.2 8.5 86 49-135 250-340 (340)
160 cd08290 ETR 2-enoyl thioester 95.2 0.1 2.2E-06 38.1 6.9 85 49-134 240-340 (341)
161 cd05282 ETR_like 2-enoyl thioe 95.2 0.14 3E-06 37.0 7.3 84 49-133 226-322 (323)
162 cd08265 Zn_ADH3 Alcohol dehydr 95.1 0.17 3.6E-06 37.9 7.8 83 49-132 296-382 (384)
163 cd05278 FDH_like Formaldehyde 95.0 0.21 4.6E-06 36.5 7.9 84 49-133 256-345 (347)
164 PF00107 ADH_zinc_N: Zinc-bind 95.0 0.0019 4.1E-08 40.5 -2.5 59 92-156 4-68 (130)
165 cd08269 Zn_ADH9 Alcohol dehydr 94.9 0.25 5.3E-06 35.5 7.9 84 49-133 218-311 (312)
166 cd05285 sorbitol_DH Sorbitol d 94.7 0.3 6.5E-06 35.8 8.2 83 49-133 254-341 (343)
167 cd08236 sugar_DH NAD(P)-depend 94.5 0.3 6.5E-06 35.7 7.7 83 49-132 247-342 (343)
168 cd08289 MDR_yhfp_like Yhfp put 94.5 0.34 7.3E-06 35.1 7.8 86 49-134 232-325 (326)
169 cd05281 TDH Threonine dehydrog 94.3 0.35 7.6E-06 35.4 7.7 85 49-134 251-340 (341)
170 cd08234 threonine_DH_like L-th 94.3 0.42 9.1E-06 34.7 8.0 82 49-133 246-333 (334)
171 cd08278 benzyl_alcohol_DH Benz 94.2 0.38 8.2E-06 35.7 7.8 83 50-133 275-364 (365)
172 cd08279 Zn_ADH_class_III Class 93.8 0.59 1.3E-05 34.6 8.1 83 49-132 271-361 (363)
173 PTZ00414 10 kDa heat shock pro 93.8 0.091 2E-06 31.5 3.0 22 16-37 46-71 (100)
174 cd00320 cpn10 Chaperonin 10 Kd 93.5 0.11 2.3E-06 30.9 3.0 24 15-38 35-67 (93)
175 PRK00364 groES co-chaperonin G 93.1 0.12 2.5E-06 30.8 2.8 24 15-38 36-68 (95)
176 PRK10754 quinone oxidoreductas 92.5 0.78 1.7E-05 33.3 6.9 43 91-133 280-325 (327)
177 cd05288 PGDH Prostaglandin deh 92.3 0.66 1.4E-05 33.6 6.4 83 49-132 233-328 (329)
178 cd08293 PTGR2 Prostaglandin re 92.2 0.45 9.8E-06 34.8 5.4 44 91-134 300-344 (345)
179 cd08299 alcohol_DH_class_I_II_ 92.2 1.8 4E-05 32.3 8.7 80 51-133 283-371 (373)
180 cd05279 Zn_ADH1 Liver alcohol 91.9 1.4 3E-05 32.7 7.8 78 49-127 273-359 (365)
181 cd08258 Zn_ADH4 Alcohol dehydr 91.9 0.47 1E-05 34.3 5.1 52 49-101 253-306 (306)
182 cd08291 ETR_like_1 2-enoyl thi 91.8 0.048 1E-06 39.6 0.0 143 5-157 58-223 (324)
183 cd08272 MDR6 Medium chain dehy 91.8 1.8 3.9E-05 31.0 8.1 45 90-134 279-325 (326)
184 TIGR02824 quinone_pig3 putativ 91.7 1.8 4E-05 30.9 8.1 85 49-134 227-324 (325)
185 cd08241 QOR1 Quinone oxidoredu 91.7 1.4 3.1E-05 31.4 7.5 83 49-132 227-321 (323)
186 COG0234 GroS Co-chaperonin Gro 91.5 0.27 5.7E-06 29.1 2.8 22 16-37 37-67 (96)
187 cd08250 Mgc45594_like Mgc45594 91.4 1.3 2.8E-05 32.1 7.1 83 49-133 226-328 (329)
188 PRK14533 groES co-chaperonin G 91.2 0.35 7.6E-06 28.6 3.2 23 15-37 36-62 (91)
189 cd05286 QOR2 Quinone oxidoredu 91.1 2.1 4.4E-05 30.5 7.8 85 49-133 224-318 (320)
190 cd08252 AL_MDR Arginate lyase 90.9 1.6 3.5E-05 31.7 7.2 83 49-133 237-335 (336)
191 PF00166 Cpn10: Chaperonin 10 90.7 0.28 6.1E-06 29.1 2.5 24 15-38 35-67 (93)
192 cd08243 quinone_oxidoreductase 90.6 1.6 3.5E-05 31.2 6.9 83 49-132 227-318 (320)
193 cd08253 zeta_crystallin Zeta-c 90.3 2.3 5E-05 30.4 7.5 85 50-134 233-324 (325)
194 cd08255 2-desacetyl-2-hydroxye 90.2 1 2.2E-05 31.8 5.5 76 48-125 178-268 (277)
195 TIGR03451 mycoS_dep_FDH mycoth 89.2 0.26 5.7E-06 36.5 1.9 45 5-50 52-96 (358)
196 cd05289 MDR_like_2 alcohol deh 88.8 2.9 6.2E-05 29.7 7.0 81 49-132 227-308 (309)
197 cd08267 MDR1 Medium chain dehy 88.7 3.3 7.2E-05 29.6 7.3 82 50-132 230-318 (319)
198 cd08273 MDR8 Medium chain dehy 88.4 3.5 7.5E-05 29.8 7.3 44 89-132 285-329 (331)
199 cd06919 Asp_decarbox Aspartate 87.4 0.76 1.6E-05 28.0 2.7 32 10-41 59-90 (111)
200 cd08275 MDR3 Medium chain dehy 87.2 6.7 0.00015 28.3 8.2 86 49-134 225-336 (337)
201 cd08268 MDR2 Medium chain dehy 86.9 6.8 0.00015 28.0 8.0 85 49-134 232-327 (328)
202 TIGR00223 panD L-aspartate-alp 86.8 0.87 1.9E-05 28.4 2.8 32 10-41 60-91 (126)
203 cd08249 enoyl_reductase_like e 86.4 5.2 0.00011 29.3 7.3 46 89-134 289-338 (339)
204 KOG1196 Predicted NAD-dependen 86.4 2 4.3E-05 31.3 4.7 86 50-136 243-341 (343)
205 PF02261 Asp_decarbox: Asparta 85.9 0.39 8.5E-06 29.5 1.0 31 10-40 60-90 (116)
206 cd08239 THR_DH_like L-threonin 85.9 0.33 7.1E-06 35.5 0.7 44 7-51 54-97 (339)
207 KOG1202 Animal-type fatty acid 85.8 3.8 8.3E-05 35.8 6.7 86 50-137 1645-1743(2376)
208 PRK05449 aspartate alpha-decar 85.6 1 2.2E-05 28.1 2.7 32 10-41 60-91 (126)
209 cd08247 AST1_like AST1 is a cy 84.7 2 4.4E-05 31.5 4.5 46 89-134 305-351 (352)
210 KOG1641 Mitochondrial chaperon 84.6 1.4 3.1E-05 26.4 2.8 26 12-37 41-75 (104)
211 cd08233 butanediol_DH_like (2R 84.5 0.35 7.5E-06 35.6 0.4 42 7-49 64-105 (351)
212 COG1063 Tdh Threonine dehydrog 84.0 2.1 4.5E-05 31.8 4.3 42 10-53 58-99 (350)
213 cd00401 AdoHcyase S-adenosyl-L 81.6 1.9 4.1E-05 32.9 3.3 77 48-126 277-366 (413)
214 COG1062 AdhC Zn-dependent alco 81.3 0.73 1.6E-05 34.0 1.0 50 3-53 51-100 (366)
215 PLN03154 putative allyl alcoho 80.9 0.44 9.5E-06 35.2 -0.3 33 6-38 71-105 (348)
216 TIGR02817 adh_fam_1 zinc-bindi 80.8 13 0.00027 27.0 7.3 44 90-133 286-333 (336)
217 cd08281 liver_ADH_like1 Zinc-d 80.0 0.7 1.5E-05 34.4 0.5 45 5-50 59-103 (371)
218 PLN02740 Alcohol dehydrogenase 78.2 1.6 3.4E-05 32.7 1.9 46 5-51 63-108 (381)
219 TIGR03201 dearomat_had 6-hydro 77.2 1 2.3E-05 33.1 0.7 43 6-50 52-94 (349)
220 PRK10309 galactitol-1-phosphat 76.0 2.2 4.8E-05 31.3 2.2 45 6-51 52-96 (347)
221 COG2130 Putative NADP-dependen 75.4 1.3 2.9E-05 32.3 0.8 136 8-157 68-230 (340)
222 cd08248 RTN4I1 Human Reticulon 75.3 6.3 0.00014 28.8 4.4 45 88-132 303-348 (350)
223 COG0853 PanD Aspartate 1-decar 74.6 3.7 8E-05 25.6 2.5 32 10-41 59-90 (126)
224 PLN02827 Alcohol dehydrogenase 71.2 2.6 5.7E-05 31.6 1.6 45 6-51 62-106 (378)
225 cd08271 MDR5 Medium chain dehy 70.4 12 0.00027 26.7 4.9 44 91-134 280-324 (325)
226 KOG0025 Zn2+-binding dehydroge 68.8 16 0.00034 26.9 4.8 148 4-157 74-244 (354)
227 cd05284 arabinose_DH_like D-ar 68.6 2.7 5.9E-05 30.6 1.2 36 4-39 54-89 (340)
228 PRK09880 L-idonate 5-dehydroge 67.1 15 0.00032 27.0 4.8 44 5-51 57-100 (343)
229 cd08297 CAD3 Cinnamyl alcohol 66.0 2.5 5.3E-05 30.9 0.5 33 6-38 55-87 (341)
230 PTZ00354 alcohol dehydrogenase 65.7 1.8 3.9E-05 31.3 -0.3 140 5-156 56-220 (334)
231 cd08251 polyketide_synthase po 65.5 13 0.00028 26.2 4.2 42 91-132 260-302 (303)
232 smart00829 PKS_ER Enoylreducta 61.4 17 0.00037 25.3 4.1 42 91-132 245-287 (288)
233 cd08277 liver_alcohol_DH_like 60.1 9.6 0.00021 28.3 2.7 46 5-51 53-98 (365)
234 cd05195 enoyl_red enoyl reduct 60.1 19 0.00042 25.0 4.2 42 91-132 250-292 (293)
235 cd08276 MDR7 Medium chain dehy 59.1 3.2 6.9E-05 30.0 0.1 34 6-39 56-89 (336)
236 PF01041 DegT_DnrJ_EryC1: DegT 58.4 18 0.00039 27.0 3.9 77 28-105 61-143 (363)
237 COG0399 WecE Predicted pyridox 57.3 13 0.00029 28.1 3.0 93 28-126 70-167 (374)
238 PF10844 DUF2577: Protein of u 53.7 9.7 0.00021 22.8 1.5 13 28-40 76-88 (100)
239 PF01455 HupF_HypC: HupF/HypC 46.9 24 0.00052 19.6 2.3 26 14-39 22-48 (68)
240 PRK11873 arsM arsenite S-adeno 43.7 68 0.0015 22.7 4.8 31 92-122 212-246 (272)
241 cd05188 MDR Medium chain reduc 39.2 73 0.0016 21.9 4.4 48 49-97 221-270 (271)
242 PF05853 DUF849: Prokaryotic p 38.7 96 0.0021 22.4 4.9 46 87-132 124-169 (272)
243 COG1064 AdhP Zn-dependent alco 37.0 16 0.00034 27.3 0.7 49 5-53 55-103 (339)
244 PF15584 Imm44: Immunity prote 36.6 32 0.00069 20.4 1.8 25 3-27 2-26 (94)
245 PF14444 S1-like: S1-like 36.6 23 0.00049 19.0 1.1 11 29-39 34-44 (58)
246 PRK02290 3-dehydroquinate synt 35.3 24 0.00053 26.3 1.5 17 25-41 312-328 (344)
247 cd05834 HDGF_related The PWWP 34.2 33 0.00072 19.7 1.7 14 28-41 2-15 (83)
248 PF14801 GCD14_N: tRNA methylt 34.0 21 0.00045 18.8 0.7 10 28-37 5-14 (54)
249 TIGR02379 ECA_wecE TDP-4-keto- 33.3 99 0.0021 23.3 4.5 78 28-106 67-150 (376)
250 PF14031 D-ser_dehydrat: Putat 32.6 41 0.0009 19.8 1.9 15 27-41 65-79 (94)
251 TIGR00074 hypC_hupF hydrogenas 31.9 51 0.0011 18.7 2.1 13 27-39 34-46 (76)
252 cd05840 SPBC215_ISWI_like The 30.5 37 0.00079 20.1 1.4 12 29-40 1-12 (93)
253 PF11132 SplA: Transcriptional 30.5 44 0.00096 18.8 1.6 15 27-41 4-18 (75)
254 COG1329 Transcriptional regula 29.9 36 0.00078 22.5 1.4 12 28-40 4-15 (166)
255 PRK06763 F0F1 ATP synthase sub 28.9 67 0.0015 22.1 2.6 23 17-39 44-85 (213)
256 smart00739 KOW KOW (Kyprides, 28.7 53 0.0011 13.8 1.5 11 29-39 2-12 (28)
257 COG1990 pth2 Peptidyl-tRNA hyd 27.6 32 0.0007 21.5 0.9 64 94-157 48-118 (122)
258 PF06574 FAD_syn: FAD syntheta 27.2 1.8E+02 0.004 18.9 4.6 54 87-140 21-89 (157)
259 PRK09838 periplasmic copper-bi 26.8 1.3E+02 0.0028 18.7 3.4 14 11-24 41-54 (115)
260 PF11017 DUF2855: Protein of u 25.9 88 0.0019 23.2 3.0 22 17-40 39-60 (314)
261 PF13533 Biotin_lipoyl_2: Biot 25.7 79 0.0017 16.0 2.1 25 13-37 7-32 (50)
262 PRK11706 TDP-4-oxo-6-deoxy-D-g 25.5 1.7E+02 0.0037 21.9 4.6 75 29-105 68-149 (375)
263 PF09926 DUF2158: Uncharacteri 25.3 44 0.00095 17.5 1.0 9 29-37 1-9 (53)
264 PF15057 DUF4537: Domain of un 25.2 82 0.0018 19.7 2.4 12 27-38 54-65 (124)
265 PF11717 Tudor-knot: RNA bindi 24.8 41 0.00088 17.5 0.9 11 29-39 1-11 (55)
266 COG0299 PurN Folate-dependent 24.4 1.4E+02 0.003 20.6 3.5 62 89-151 12-84 (200)
267 PF01959 DHQS: 3-dehydroquinat 24.2 52 0.0011 24.8 1.6 15 26-40 323-337 (354)
268 PF09652 Cas_VVA1548: Putative 24.2 70 0.0015 19.0 1.8 34 27-62 30-63 (93)
269 PF06442 DHFR_2: R67 dihydrofo 24.0 83 0.0018 17.2 1.9 33 27-59 22-59 (78)
270 cd05835 Dnmt3b_related The PWW 23.8 57 0.0012 18.9 1.4 12 29-40 1-12 (87)
271 smart00293 PWWP domain with co 23.7 59 0.0013 17.4 1.4 12 29-40 1-12 (63)
272 TIGR00739 yajC preprotein tran 23.5 55 0.0012 19.0 1.3 13 27-39 36-48 (84)
273 cd05836 N_Pac_NP60 The PWWP do 23.3 59 0.0013 18.8 1.4 12 29-40 1-12 (86)
274 PF13538 UvrD_C_2: UvrD-like h 23.0 55 0.0012 19.1 1.3 13 29-41 1-13 (104)
275 PF00044 Gp_dh_N: Glyceraldehy 22.6 32 0.00069 22.4 0.2 11 145-155 87-97 (151)
276 smart00846 Gp_dh_N Glyceraldeh 22.3 36 0.00077 22.1 0.4 12 144-155 85-96 (149)
277 PF10377 ATG11: Autophagy-rela 21.9 59 0.0013 20.6 1.3 16 26-41 40-55 (129)
278 COG1430 Uncharacterized conser 21.7 1.4E+02 0.003 18.9 2.9 20 18-37 97-119 (126)
279 PF01079 Hint: Hint module; I 21.5 50 0.0011 23.0 1.0 14 26-39 29-42 (217)
280 PF13403 Hint_2: Hint domain 21.4 58 0.0013 21.0 1.2 22 17-38 6-30 (147)
281 PF03459 TOBE: TOBE domain; I 21.4 68 0.0015 16.9 1.4 12 28-39 46-57 (64)
282 COG3269 Predicted RNA-binding 21.2 1.7E+02 0.0038 16.5 3.6 20 6-25 10-29 (73)
283 PF03829 PTSIIA_gutA: PTS syst 21.1 1E+02 0.0022 19.2 2.2 22 17-38 7-28 (117)
284 TIGR02620 cas_VVA1548 putative 21.0 83 0.0018 18.7 1.7 33 28-62 31-63 (93)
285 cd04466 S1_YloQ_GTPase S1_YloQ 20.8 80 0.0017 16.8 1.6 11 28-38 37-47 (68)
286 PF10077 DUF2314: Uncharacteri 20.7 1.5E+02 0.0032 18.8 3.0 26 12-37 63-88 (133)
287 cd05162 PWWP The PWWP domain, 20.6 71 0.0015 18.2 1.4 12 29-40 1-12 (87)
288 TIGR00638 Mop molybdenum-pteri 20.4 80 0.0017 16.8 1.5 12 28-39 48-59 (69)
289 PRK15407 lipopolysaccharide bi 20.2 4E+02 0.0087 20.7 5.7 77 28-105 107-189 (438)
290 cd07376 PLPDE_III_DSD_D-TA_lik 20.1 1.4E+02 0.0029 22.1 3.1 16 26-41 303-318 (345)
No 1
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=6.1e-25 Score=153.14 Aligned_cols=89 Identities=42% Similarity=0.706 Sum_probs=84.4
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcc
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVK 128 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~ 128 (158)
++.+|+++++|+| .++.++...++.+.+.+.|+..| ++.+.+++++++.++.+++.+++.++++++++|+++++++++
T Consensus 269 lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG-~~ket~E~Ldf~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~ 347 (360)
T KOG0023|consen 269 LKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVG-SRKETQEALDFVARGLIKSPIELVKLSEVNEAYERMEKGDVR 347 (360)
T ss_pred hhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccc-cHHHHHHHHHHHHcCCCcCceEEEehhHHHHHHHHHHhcCee
Confidence 6779999999999 78999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCccc
Q 040822 129 YRFVIDIGQHL 139 (158)
Q Consensus 129 ~k~vl~~~~~~ 139 (158)
+|.++++..++
T Consensus 348 yRfVvD~s~~~ 358 (360)
T KOG0023|consen 348 YRFVVDVSKSL 358 (360)
T ss_pred EEEEEEccccc
Confidence 99999887654
No 2
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.92 E-value=3.9e-24 Score=152.44 Aligned_cols=86 Identities=37% Similarity=0.570 Sum_probs=77.9
Q ss_pred cccCCEEEEEcCCC--c-eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcC
Q 040822 50 ASIAGVYVIVEVPK--E-VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENR 125 (158)
Q Consensus 50 ~~~~g~~v~~g~~~--~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~ 125 (158)
++.+|+++++|+|. + .+.+...++.+++++.|+..+ ++.+.+++++|+.++++++.+ +.+++++++++|+.++++
T Consensus 249 l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g-~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g 327 (339)
T COG1064 249 LRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVG-TRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKG 327 (339)
T ss_pred HhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecC-CHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcC
Confidence 56689999999983 3 446788899999999999999 999999999999999999999 699999999999999999
Q ss_pred CcceeEEEEeC
Q 040822 126 DVKYRFVIDIG 136 (158)
Q Consensus 126 ~~~~k~vl~~~ 136 (158)
+..||.+|++.
T Consensus 328 ~v~gR~Vi~~~ 338 (339)
T COG1064 328 KVRGRAVIDMS 338 (339)
T ss_pred CeeeEEEecCC
Confidence 99999988764
No 3
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.82 E-value=1.4e-19 Score=127.72 Aligned_cols=82 Identities=23% Similarity=0.394 Sum_probs=65.8
Q ss_pred cccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc--ce-EEEecccHHHHHHH
Q 040822 50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP--EI-EIIPIQYVNGALER 121 (158)
Q Consensus 50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~--~i-~v~~~~~~~~a~~~ 121 (158)
+..+|+.+++|++ ..++++...+... ++++|++.|. ...++..++++..+|+++. ++ +.++|+|++++|+.
T Consensus 275 ~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~ 353 (366)
T COG1062 275 THRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDL 353 (366)
T ss_pred HhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHH
Confidence 3448899999988 4566777777766 9999999873 4678899999999999874 44 69999999999999
Q ss_pred HHcCCcceeEEE
Q 040822 122 LENRDVKYRFVI 133 (158)
Q Consensus 122 ~~~~~~~~k~vl 133 (158)
+.+++.. |.++
T Consensus 354 m~~G~~I-R~Vi 364 (366)
T COG1062 354 MHEGKSI-RSVI 364 (366)
T ss_pred HhCCcee-eEEe
Confidence 9888754 5554
No 4
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2e-18 Score=121.04 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=69.6
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~ 125 (158)
++.+|.+++++.- ...+++......+++.+.|++.+ ....+..++++++.|++++ +.+.|+++++.+||+.+.++
T Consensus 263 ~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry-~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~ 341 (354)
T KOG0024|consen 263 TRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRY-CNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHG 341 (354)
T ss_pred hccCCEEEEeccCCCccccChhhhhhheeeeeeeeee-ccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhC
Confidence 4568888888876 78899999999999999999998 7778899999999999974 44789999999999999877
Q ss_pred Cc-ceeEEEE
Q 040822 126 DV-KYRFVID 134 (158)
Q Consensus 126 ~~-~~k~vl~ 134 (158)
.. .-|+++.
T Consensus 342 ~~~~iKv~i~ 351 (354)
T KOG0024|consen 342 EEGVIKVIIT 351 (354)
T ss_pred cCCceEEEEe
Confidence 63 2355443
No 5
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.75 E-value=3.1e-18 Score=116.52 Aligned_cols=146 Identities=17% Similarity=0.161 Sum_probs=100.1
Q ss_pred CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee--eehhh---------
Q 040822 4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF--KTVNL--------- 72 (158)
Q Consensus 4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~--~~~~~--------- 72 (158)
|.++|+++|.|++|+|+++|++|++|++||||+-+.. .+.+.++...... -+...|..+.+ ..+.+
T Consensus 61 ~~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~--~g~yaee~~vP~~-kv~~vpe~i~~k~aaa~llq~lTAy~l 137 (336)
T KOG1197|consen 61 PAPLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNP--FGAYAEEVTVPSV-KVFKVPEAITLKEAAALLLQGLTAYML 137 (336)
T ss_pred CCCCCcCCCcccceEEEEecCCccccccccEEEEecc--chhhheeccccce-eeccCCcccCHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999976653 3445555544322 22233422222 11111
Q ss_pred -------hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCc
Q 040822 73 -------IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPR 144 (158)
Q Consensus 73 -------~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g 144 (158)
-.+...+.+...| +. ...+.||++..+...+.....-++.+.+.+.-..+-++++.. ++.+++. +|+|
T Consensus 138 l~e~y~vkpGhtVlvhaAAG-GV--Glll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~e-D~v~~V~kiTng 213 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVHAAAG-GV--GLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTE-DYVDEVKKITNG 213 (336)
T ss_pred HHHhcCCCCCCEEEEEeccc-cH--HHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccch-hHHHHHHhccCC
Confidence 1244566666655 33 356789999998887666666666666655554544555554 7777888 9999
Q ss_pred cCcCccccCCCC
Q 040822 145 VGPWSCMDKIPS 156 (158)
Q Consensus 145 ~g~d~v~d~~~~ 156 (158)
+|||+++|++|.
T Consensus 214 KGVd~vyDsvG~ 225 (336)
T KOG1197|consen 214 KGVDAVYDSVGK 225 (336)
T ss_pred CCceeeeccccc
Confidence 999999999985
No 6
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.67 E-value=5.3e-17 Score=117.50 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=93.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC-CccccccccccccCCEEEEEcCCCceeeeehh------------
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP-YVNSCQDCNFASIAGVYVIVEVPKEVKFKTVN------------ 71 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~-~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~------------ 71 (158)
.++|+++|.|++|+|+++|++|++|++||||+... ....+++++|+....+.+. ..|+.+++..+.
T Consensus 55 ~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~-~~P~~ls~~eAAal~~~~~TA~~~ 133 (326)
T COG0604 55 RPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLV-PLPDGLSFEEAAALPLAGLTAWLA 133 (326)
T ss_pred CCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHce-eCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999998764 1113578888877754444 245443332211
Q ss_pred hhh------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-cCCc
Q 040822 72 LIM------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE-LKPR 144 (158)
Q Consensus 72 ~~~------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~-~t~g 144 (158)
+.. ++..++.... -.....++||++..+...++.+-+-++.+.+.+...+..++++.- ++.+.++ +|+|
T Consensus 134 l~~~~~l~~g~~VLV~gaa---GgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~-~~~~~v~~~t~g 209 (326)
T COG0604 134 LFDRAGLKPGETVLVHGAA---GGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREE-DFVEQVRELTGG 209 (326)
T ss_pred HHHhcCCCCCCEEEEecCC---chHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcc-cHHHHHHHHcCC
Confidence 111 2223333322 334578999999998755554544444442211111111222221 3677787 9999
Q ss_pred cCcCccccCCCCC
Q 040822 145 VGPWSCMDKIPSR 157 (158)
Q Consensus 145 ~g~d~v~d~~~~~ 157 (158)
+|+|+|+|++|++
T Consensus 210 ~gvDvv~D~vG~~ 222 (326)
T COG0604 210 KGVDVVLDTVGGD 222 (326)
T ss_pred CCceEEEECCCHH
Confidence 9999999999864
No 7
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.65 E-value=7.4e-15 Score=108.49 Aligned_cols=84 Identities=39% Similarity=0.774 Sum_probs=66.5
Q ss_pred CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822 53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF 131 (158)
Q Consensus 53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~ 131 (158)
+|+++.++.+ .+..++...++.++.++.++..+ +..++.+++++++++.+++.++.|+++++++||+.++++...+|.
T Consensus 266 ~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gkv 344 (375)
T PLN02178 266 SGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIG-GMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRF 344 (375)
T ss_pred CCEEEEEccCCCCCccCHHHHHhCCeEEEEeCcc-CHHHHHHHHHHHHhCCCcccEEEEeHHHHHHHHHHHHcCCCceEE
Confidence 4555555554 33444555566678888888877 778889999999999999877889999999999999998888999
Q ss_pred EEEeCc
Q 040822 132 VIDIGQ 137 (158)
Q Consensus 132 vl~~~~ 137 (158)
++.+..
T Consensus 345 vi~~~~ 350 (375)
T PLN02178 345 VIDVAN 350 (375)
T ss_pred EEEecc
Confidence 888733
No 8
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.64 E-value=7.3e-15 Score=108.02 Aligned_cols=82 Identities=39% Similarity=0.773 Sum_probs=62.3
Q ss_pred CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822 53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF 131 (158)
Q Consensus 53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~ 131 (158)
+|+++.++.+ .+..++...++.++..+.++..+ +..++++++++++++.+++.+++|+++++++||+.+++++..+|.
T Consensus 271 ~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~li~~g~i~~~~~~~~l~~~~~A~~~~~~~~~~gkv 349 (360)
T PLN02586 271 NGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIG-GIKETQEMLDFCAKHNITADIELIRMDEINTAMERLAKSDVRYRF 349 (360)
T ss_pred CcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcC-CHHHHHHHHHHHHhCCCCCcEEEEeHHHHHHHHHHHHcCCCcEEE
Confidence 4455555543 33334444455566677777767 777889999999999999877889999999999999998888899
Q ss_pred EEEe
Q 040822 132 VIDI 135 (158)
Q Consensus 132 vl~~ 135 (158)
++.+
T Consensus 350 vi~~ 353 (360)
T PLN02586 350 VIDV 353 (360)
T ss_pred EEEc
Confidence 8876
No 9
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=4.4e-15 Score=104.03 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=61.8
Q ss_pred CCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822 53 AGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 53 ~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~ 124 (158)
.|..+++|++ ..+++.+..++. ++++.|+..|+ +..+.+.+++.+.++.++. +.+.+|++++++||+.+.+
T Consensus 287 wG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~ 365 (375)
T KOG0022|consen 287 WGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHE 365 (375)
T ss_pred CCeEEEEEecCCCcccccchhhhcc-ccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhC
Confidence 3889999987 456677777775 67888888773 4677888998888887763 4589999999999999988
Q ss_pred CCcceeEEEE
Q 040822 125 RDVKYRFVID 134 (158)
Q Consensus 125 ~~~~~k~vl~ 134 (158)
++.. |.+|.
T Consensus 366 Gksi-R~vl~ 374 (375)
T KOG0022|consen 366 GKSI-RCVLW 374 (375)
T ss_pred CceE-EEEEe
Confidence 7754 66553
No 10
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.61 E-value=3.6e-14 Score=104.25 Aligned_cols=83 Identities=42% Similarity=0.802 Sum_probs=66.0
Q ss_pred CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeE
Q 040822 53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRF 131 (158)
Q Consensus 53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~ 131 (158)
+|+++.+|.+ .+.+++...++.++.++.+++.+ +..++++++++++++.+++.+++|+++++++|++.++++...+|.
T Consensus 268 ~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gk~ 346 (357)
T PLN02514 268 DGKLILMGVINTPLQFVTPMLMLGRKVITGSFIG-SMKETEEMLEFCKEKGLTSMIEVVKMDYVNTAFERLEKNDVRYRF 346 (357)
T ss_pred CCEEEEECCCCCCCcccHHHHhhCCcEEEEEecC-CHHHHHHHHHHHHhCCCcCcEEEEcHHHHHHHHHHHHcCCCceeE
Confidence 4555555554 33444555566778889998888 777889999999999998878899999999999999988888898
Q ss_pred EEEeC
Q 040822 132 VIDIG 136 (158)
Q Consensus 132 vl~~~ 136 (158)
++.+.
T Consensus 347 v~~~~ 351 (357)
T PLN02514 347 VVDVA 351 (357)
T ss_pred EEEcc
Confidence 87764
No 11
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.61 E-value=3.1e-14 Score=103.49 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=65.9
Q ss_pred cccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCc
Q 040822 50 ASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDV 127 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~ 127 (158)
++++|+++++|.+ . ...++...++.+++++.++... ...++.+++++++++.++++.++|+++++++|++.++++..
T Consensus 244 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~l~~~g~i~~i~~~~~l~~~~~A~~~~~~~~~ 322 (329)
T TIGR02822 244 LDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSN-TRADAREFLELAAQHGVRVTTHTYPLSEADRALRDLKAGRF 322 (329)
T ss_pred hCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecC-CHHHHHHHHHHHHhCCCeeEEEEEeHHHHHHHHHHHHcCCC
Confidence 3457778777764 2 2234555566778888888777 77778889999999999877789999999999999999988
Q ss_pred ceeEEE
Q 040822 128 KYRFVI 133 (158)
Q Consensus 128 ~~k~vl 133 (158)
.+|.++
T Consensus 323 ~Gkvvl 328 (329)
T TIGR02822 323 DGAAVL 328 (329)
T ss_pred ceEEEe
Confidence 888875
No 12
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.57 E-value=6.7e-14 Score=100.91 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=65.0
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~ 125 (158)
++++|+++++|.+ .+..++...++.++.++.++... ....+++++++++++.+++ +.++++++++++||+.+.++
T Consensus 221 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~ 299 (308)
T TIGR01202 221 LAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEW-QPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSD 299 (308)
T ss_pred hhcCcEEEEEeecCCCcccccchhhhcceEEEEeccc-chhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcC
Confidence 4567888888876 44556666677778888888776 6777899999999999875 45799999999999988766
Q ss_pred CcceeEEE
Q 040822 126 DVKYRFVI 133 (158)
Q Consensus 126 ~~~~k~vl 133 (158)
...+|.++
T Consensus 300 ~~~~Kv~~ 307 (308)
T TIGR01202 300 PDCLKMIL 307 (308)
T ss_pred cCceEEEe
Confidence 55567764
No 13
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.51 E-value=4.9e-13 Score=98.74 Aligned_cols=81 Identities=17% Similarity=0.348 Sum_probs=61.4
Q ss_pred ccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822 51 SIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER 121 (158)
Q Consensus 51 ~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~ 121 (158)
+++|+++.++.+ . ...++...++.+++++.+++.+ + ..++.+++++++++.+++ +.++|++++++++|+.
T Consensus 281 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~ 359 (371)
T cd08281 281 RRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMG-SCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDR 359 (371)
T ss_pred hcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecC-CCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHH
Confidence 456777777765 2 3455666677788899998765 4 456788999999999874 3478999999999999
Q ss_pred HHcCCcceeEE
Q 040822 122 LENRDVKYRFV 132 (158)
Q Consensus 122 ~~~~~~~~k~v 132 (158)
++++...++++
T Consensus 360 ~~~~~~~~~vi 370 (371)
T cd08281 360 LAAGEAVRQVI 370 (371)
T ss_pred HhCCCceeeee
Confidence 98887765543
No 14
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.50 E-value=6.7e-13 Score=97.03 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=61.9
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~ 125 (158)
++++|+++.+|.+ ....++...++.+++++.++... ...+++++++++++.+++ +.+++++++++++++.+.++
T Consensus 256 l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~--~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~ 333 (343)
T PRK09880 256 TRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRF--TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDK 333 (343)
T ss_pred hhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeec--cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcC
Confidence 3446677777665 33455556666777888887654 356788999999999975 34789999999999999887
Q ss_pred CcceeEEEE
Q 040822 126 DVKYRFVID 134 (158)
Q Consensus 126 ~~~~k~vl~ 134 (158)
...+|.++.
T Consensus 334 ~~~gKvvl~ 342 (343)
T PRK09880 334 TQAAKVQLV 342 (343)
T ss_pred CCceEEEEe
Confidence 767888764
No 15
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.49 E-value=1.2e-12 Score=95.45 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCceeeee-hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCCcc
Q 040822 53 AGVYVIVEVPKEVKFKT-VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRDVK 128 (158)
Q Consensus 53 ~g~~v~~g~~~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~~~ 128 (158)
+|+++.++.+....++. ..++.+++++.+++.+ +...+++++++++++.+++ +.+++++++++++++.++++. .
T Consensus 255 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~ 332 (339)
T cd08239 255 WGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYF-SVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-S 332 (339)
T ss_pred CCEEEEEcCCCCcccCcHHHHHhCCCEEEEEecC-CHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-c
Confidence 45555555441112222 2455677888888877 7778899999999999864 447899999999999988765 6
Q ss_pred eeEEEEe
Q 040822 129 YRFVIDI 135 (158)
Q Consensus 129 ~k~vl~~ 135 (158)
+|.++.|
T Consensus 333 gKvvi~~ 339 (339)
T cd08239 333 GKVVFVF 339 (339)
T ss_pred eEEEEeC
Confidence 8887653
No 16
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.43 E-value=5.4e-12 Score=92.36 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=61.0
Q ss_pred cccCCEEEEEcCC-Cceeee---ehhhhhccceeEEeeecCC-----HHHHHHHHHHHHhCCcc--c-ceEEEecccHHH
Q 040822 50 ASIAGVYVIVEVP-KEVKFK---TVNLIMEMRTIAGSIVGGG-----TQETKEMVEFCAENGIY--P-EIEIIPIQYVNG 117 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~---~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~ 117 (158)
++++|+++++|.+ ....++ ...++.++.++.++..+ . ..++++++++++++.++ + +.++++++++++
T Consensus 250 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~ 328 (347)
T PRK10309 250 AGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMN-YSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQ 328 (347)
T ss_pred hhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEecc-ccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHH
Confidence 3446777777755 332222 12456678888887654 2 35678899999999885 3 457899999999
Q ss_pred HHHHHHcCCcceeEEEEe
Q 040822 118 ALERLENRDVKYRFVIDI 135 (158)
Q Consensus 118 a~~~~~~~~~~~k~vl~~ 135 (158)
|++.+.++...+|.++.+
T Consensus 329 A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 329 AVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred HHHHHhcCCcceEEEEeC
Confidence 999998887778987654
No 17
>PLN02827 Alcohol dehydrogenase-like
Probab=99.42 E-value=4.5e-12 Score=93.86 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=61.4
Q ss_pred ccC-CEEEEEcCC-Cceeeee-hhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822 51 SIA-GVYVIVEVP-KEVKFKT-VNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER 121 (158)
Q Consensus 51 ~~~-g~~v~~g~~-~~~~~~~-~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~ 121 (158)
+++ |+++++|.+ ....+.. ..++.++.++.|+..+ . ..++++++++++++.+++ +.++|++++++++++.
T Consensus 285 ~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~ 363 (378)
T PLN02827 285 SDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFG-GWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFEL 363 (378)
T ss_pred ccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecC-CCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHH
Confidence 345 777777776 3333322 3456678888887664 3 346778999999999986 4478999999999999
Q ss_pred HHcCCcceeEEEEeC
Q 040822 122 LENRDVKYRFVIDIG 136 (158)
Q Consensus 122 ~~~~~~~~k~vl~~~ 136 (158)
+++++. .|.++.+.
T Consensus 364 ~~~~~~-~k~vi~~~ 377 (378)
T PLN02827 364 MREGKC-LRCVIHMP 377 (378)
T ss_pred HHCCCc-eEEEEEec
Confidence 988776 58887664
No 18
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.42 E-value=7.7e-12 Score=91.95 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=60.4
Q ss_pred cccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822 50 ASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER 121 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~ 121 (158)
++.+|+++.+|.+ . ...++...++.++.++.+++.+. ....+++++++++++.+++ +.++|++++++++++.
T Consensus 266 ~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~ 345 (358)
T TIGR03451 266 RDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDK 345 (358)
T ss_pred hccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHH
Confidence 3557888888876 3 24455556677788888775430 2456788999999999875 4578999999999999
Q ss_pred HHcCCcceeEEE
Q 040822 122 LENRDVKYRFVI 133 (158)
Q Consensus 122 ~~~~~~~~k~vl 133 (158)
+++++.. |.++
T Consensus 346 ~~~~~~~-k~~~ 356 (358)
T TIGR03451 346 MHAGDVL-RSVV 356 (358)
T ss_pred HhCCCcc-eeEE
Confidence 9877654 5554
No 19
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.41 E-value=4e-12 Score=92.94 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred ccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC-----Ccccce-EEEecc---cHHHHHH
Q 040822 51 SIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN-----GIYPEI-EIIPIQ---YVNGALE 120 (158)
Q Consensus 51 ~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~-----~i~~~i-~v~~~~---~~~~a~~ 120 (158)
+++|+++++|.+ .+..++...++.+++++.++..+ +..++++++++++++ .+++.+ +.|+++ +++++|+
T Consensus 247 ~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~ 325 (341)
T cd08237 247 RPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRS-TREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFE 325 (341)
T ss_pred cCCcEEEEEeecCCCcccCHHHHhhCceEEEEeccc-CHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHH
Confidence 345666666655 34445555667788888888877 777889999999988 355544 678986 4566666
Q ss_pred HHHcCCcceeEEEEeC
Q 040822 121 RLENRDVKYRFVIDIG 136 (158)
Q Consensus 121 ~~~~~~~~~k~vl~~~ 136 (158)
.+.++ ..+|.++.++
T Consensus 326 ~~~~~-~~gKvvi~~~ 340 (341)
T cd08237 326 SDLTN-SWGKTVMEWE 340 (341)
T ss_pred HHhhc-CcceEEEEee
Confidence 55443 5678887653
No 20
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.40 E-value=5.1e-12 Score=92.61 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=66.4
Q ss_pred cccCCEEEEEcCC-Cce-eeeehhhhhccceeEEeee-cCCHHHHHHHHHHHHhCCccc--c-eEEEecccHHHHHHHHH
Q 040822 50 ASIAGVYVIVEVP-KEV-KFKTVNLIMEMRTIAGSIV-GGGTQETKEMVEFCAENGIYP--E-IEIIPIQYVNGALERLE 123 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~-~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~l~~~~~i~~--~-i~v~~~~~~~~a~~~~~ 123 (158)
++++|+++++|.+ ... .++...+..++.++.|+.. . ....++.+++++..+.+++ . .+.+++++++++|+.+.
T Consensus 259 ~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~-~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~ 337 (350)
T COG1063 259 LRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPS-GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFA 337 (350)
T ss_pred hcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCC-CcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHH
Confidence 5678999999988 443 6778888999999999965 5 5567899999999999985 3 47788999999999998
Q ss_pred cCCc-ceeEEE
Q 040822 124 NRDV-KYRFVI 133 (158)
Q Consensus 124 ~~~~-~~k~vl 133 (158)
+... ..|.++
T Consensus 338 ~~~~~~~Kv~i 348 (350)
T COG1063 338 DRKEEAIKVVL 348 (350)
T ss_pred hcCCCeEEEEe
Confidence 7543 335554
No 21
>PLN02740 Alcohol dehydrogenase-like
Probab=99.39 E-value=1.6e-11 Score=91.01 Aligned_cols=78 Identities=18% Similarity=0.428 Sum_probs=53.5
Q ss_pred CEEEEEcCC-Cc--eeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822 54 GVYVIVEVP-KE--VKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 54 g~~v~~g~~-~~--~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~ 124 (158)
|+++++|.+ .. +.++... +.++.++.++..+ + ..++.++++++.++.+++ +.++|+++++++|++.+.+
T Consensus 294 G~~v~~G~~~~~~~~~~~~~~-~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~ 371 (381)
T PLN02740 294 GLTVLLGIHPTPKMLPLHPME-LFDGRSITGSVFG-DFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLED 371 (381)
T ss_pred CEEEEEccCCCCceecccHHH-HhcCCeEEEEecC-CCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHC
Confidence 667776655 22 2222222 2356788877665 4 356788999999998864 4479999999999999987
Q ss_pred CCcceeEEEE
Q 040822 125 RDVKYRFVID 134 (158)
Q Consensus 125 ~~~~~k~vl~ 134 (158)
+.. .|.+|.
T Consensus 372 ~~~-~k~~~~ 380 (381)
T PLN02740 372 GKA-LRCLLH 380 (381)
T ss_pred CCc-eeEEEe
Confidence 754 477654
No 22
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.39 E-value=1.3e-11 Score=90.50 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=48.5
Q ss_pred hhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc--ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP--EIEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 71 ~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~--~i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
.++.++.++.+++.+ +...+++++++++++.+++ +++.++++++++||+.++++...+|.++
T Consensus 284 ~~~~~~~~~~g~~~~-~~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~~ 347 (349)
T TIGR03201 284 NLMAFHARALGNWGC-PPDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAIL 347 (349)
T ss_pred HHhhcccEEEEEecC-CHHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEEe
Confidence 333445667777666 6667889999999999864 5678999999999999998887778765
No 23
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.38 E-value=1.7e-12 Score=96.52 Aligned_cols=44 Identities=34% Similarity=0.586 Sum_probs=35.9
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~ 49 (158)
.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+
T Consensus 59 ~~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~-~Cg~C~~ 102 (393)
T TIGR02819 59 APTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNI-ACGRCRN 102 (393)
T ss_pred CCCCccccceeEEEEEEEcCccccccCCCEEEEeccc-CCCCChH
Confidence 4568999999999999999999999999999765433 4555543
No 24
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.35 E-value=2.3e-11 Score=88.24 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=44.0
Q ss_pred hhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEE
Q 040822 71 NLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 71 ~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
.++.++.++.++... . ...+.+++++++ +.+++.+ ++|+++++.++|+.+.++...||.++
T Consensus 256 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~ 323 (324)
T cd08291 256 DLIFKNKSIEGFWLT-TWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLL 323 (324)
T ss_pred HHhhcCcEEEEEEHH-HhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEe
Confidence 344456666666543 2 234566777777 7787755 78999999999999999888888864
No 25
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.34 E-value=5e-11 Score=86.81 Aligned_cols=62 Identities=27% Similarity=0.560 Sum_probs=49.8
Q ss_pred hhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 71 ~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
.++.++.++.++..+ ....++.++++.+++.+++.++.++++++.++++.++++...+|+++
T Consensus 271 ~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~a~~~~~~~~~~gk~v~ 332 (333)
T cd08296 271 QLIMGRKSIHGWPSG-TALDSEDTLKFSALHGVRPMVETFPLEKANEAYDRMMSGKARFRVVL 332 (333)
T ss_pred HHhhcccEEEEeCcC-CHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHCCCCceeEEe
Confidence 344566677776666 66777888899888888876788999999999999998888888765
No 26
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.34 E-value=4.2e-11 Score=83.43 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred cccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHH-----------HHHHHHHHHHhCCccc-ceEEEecccH
Q 040822 50 ASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQ-----------ETKEMVEFCAENGIYP-EIEIIPIQYV 115 (158)
Q Consensus 50 ~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~-----------~~~~~~~l~~~~~i~~-~i~v~~~~~~ 115 (158)
+..+|.++.+|.. .++.++...++++.+.+.|.+.. .+. .+.++.+|++.|.+.. .....++++.
T Consensus 253 L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt-~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~ 331 (354)
T KOG0025|consen 253 LERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVT-RWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADH 331 (354)
T ss_pred HhcCceEEEecCccCCCcccccchheeccceeeeeeee-ehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhh
Confidence 4558888888866 78899999999999999999986 322 2457788999999974 4578999998
Q ss_pred HHHHHHHHcC-CcceeEEEEe
Q 040822 116 NGALERLENR-DVKYRFVIDI 135 (158)
Q Consensus 116 ~~a~~~~~~~-~~~~k~vl~~ 135 (158)
..+++..... ...+|.++.+
T Consensus 332 ~tald~~L~~~~~~~Kq~i~~ 352 (354)
T KOG0025|consen 332 KTALDAALSKFGKSGKQIIVL 352 (354)
T ss_pred hHHHHHHHHHhccCCceEEEe
Confidence 8888865433 3334555443
No 27
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.30 E-value=5.4e-11 Score=87.40 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=44.7
Q ss_pred hhhhccceeEEeeecCCHHHHHHHHHHHHhCC------ccc-ceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 71 NLIMEMRTIAGSIVGGGTQETKEMVEFCAENG------IYP-EIEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 71 ~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~------i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
.++.++.++.|+..+ +..+++++++++.++. +++ +.+++++++++++++.++++. .|.++.
T Consensus 287 ~~~~k~~~i~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~ 354 (355)
T cd08230 287 DLVLGNKALVGSVNA-NKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIE 354 (355)
T ss_pred hHhhcCcEEEEecCC-chhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEee
Confidence 345567778887766 6677888999888766 343 347899999999999876543 477664
No 28
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.29 E-value=3.3e-12 Score=78.55 Aligned_cols=50 Identities=38% Similarity=0.674 Sum_probs=39.3
Q ss_pred CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822 3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA 53 (158)
Q Consensus 3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~ 53 (158)
.+.++|.++|||++|+|+++|++|++|++||||+..... .|+.|.++..+
T Consensus 27 ~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~c~~~ 76 (109)
T PF08240_consen 27 PPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNI-GCGECEYCLSG 76 (109)
T ss_dssp STSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEE-ETSSSHHHHTT
T ss_pred cCCCCCcccccceeeeeeeeccccccccccceeeeeccc-CccCchhhcCC
Confidence 567889999999999999999999999999999876554 46666665543
No 29
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.29 E-value=1.5e-10 Score=84.51 Aligned_cols=60 Identities=53% Similarity=0.966 Sum_probs=49.8
Q ss_pred hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 73 IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 73 ~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
+.++.++.++..+ ....++.+++++.++.+++.++.+++++++++++.++.+...+|.|+
T Consensus 277 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~ 336 (337)
T cd05283 277 IFGRKSVAGSLIG-GRKETQEMLDFAAEHGIKPWVEVIPMDGINEALERLEKGDVRYRFVL 336 (337)
T ss_pred hcCceEEEEeccc-CHHHHHHHHHHHHhCCCccceEEEEHHHHHHHHHHHHcCCCcceEee
Confidence 4456667776666 67778889999999998877789999999999999998888888775
No 30
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.28 E-value=7.7e-12 Score=92.32 Aligned_cols=46 Identities=33% Similarity=0.538 Sum_probs=37.7
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
.++|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|+
T Consensus 53 ~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~C~~c~ 98 (368)
T TIGR02818 53 GVFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTA-ECGECKFCL 98 (368)
T ss_pred CCCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCC-CCCCChhhh
Confidence 3568999999999999999999999999999876543 566655554
No 31
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.28 E-value=4.6e-11 Score=85.07 Aligned_cols=41 Identities=32% Similarity=0.517 Sum_probs=33.2
Q ss_pred cccccccEEEEEeCCCCC------CCCCCCEEEecCCccccccccccc
Q 040822 10 CMGHEIVGAVKEVGSNVK------CFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~------~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
++|||++|+|+++|++|+ +|++||||...+.. .|+.|.+|+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~-~cg~C~~C~ 47 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTV-PCGRCFRCR 47 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCC-CCCCChhhh
Confidence 589999999999999999 89999999765543 466555544
No 32
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.28 E-value=1.5e-10 Score=84.92 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=54.0
Q ss_pred CCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccH-HHHHHHHHcCCc
Q 040822 53 AGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYV-NGALERLENRDV 127 (158)
Q Consensus 53 ~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~-~~a~~~~~~~~~ 127 (158)
+|+++.++.. .+..++...+..++.++.+...+ ....+++++++++++.+++ +.++++++++ ++|++.+.++..
T Consensus 265 ~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~ 343 (351)
T cd08233 265 RGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICY-TREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKE 343 (351)
T ss_pred CCEEEEEccCCCCCccCHHHHHhhCcEEEEEecc-CcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCC
Confidence 3344444433 22333333444566777777666 5677889999999999953 3468999996 789999888776
Q ss_pred c-eeEEE
Q 040822 128 K-YRFVI 133 (158)
Q Consensus 128 ~-~k~vl 133 (158)
. +|.++
T Consensus 344 ~~~k~v~ 350 (351)
T cd08233 344 QHVKILV 350 (351)
T ss_pred CceEEEe
Confidence 4 77764
No 33
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.25 E-value=2e-10 Score=84.78 Aligned_cols=77 Identities=26% Similarity=0.439 Sum_probs=51.5
Q ss_pred CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822 54 GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 54 g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~ 124 (158)
|+++++|.+ . .+.++...++ +++++.++..+ . ..+++++++++.++.+++ +.+++++++++++++.+++
T Consensus 283 g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~ 360 (369)
T cd08301 283 GVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFG-GYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLK 360 (369)
T ss_pred CEEEEECcCCCCcccccCHHHHh-cCCeEEEEecC-CCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHC
Confidence 566666654 2 2223322333 56778777654 3 245778899999988764 3478999999999999987
Q ss_pred CCcceeEEE
Q 040822 125 RDVKYRFVI 133 (158)
Q Consensus 125 ~~~~~k~vl 133 (158)
++.. |.++
T Consensus 361 ~~~~-k~~~ 368 (369)
T cd08301 361 GECL-RCIL 368 (369)
T ss_pred CCce-eEEe
Confidence 7643 6553
No 34
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.23 E-value=1.4e-11 Score=89.08 Aligned_cols=140 Identities=20% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeee--------eh----hh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFK--------TV----NL 72 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~--------~~----~~ 72 (158)
+++|.++|+|++|+|+++|++|++|++||||++.... .++++++...... +..+|..+... .. .+
T Consensus 56 ~~~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~--g~~~~~~~~~~~~-~~~ip~~~~~~~aa~~~~~~~ta~~~~ 132 (324)
T cd08292 56 PELPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVH--GTWAEYFVAPADG-LVPLPDGISDEVAAQLIAMPLSALMLL 132 (324)
T ss_pred CCCCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccCC--CcceeEEEEchHH-eEECCCCCCHHHhhhccccHHHHHHHH
Confidence 4568899999999999999999999999999876421 2345555444221 22344221110 00 00
Q ss_pred -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-c
Q 040822 73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-L 141 (158)
Q Consensus 73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~ 141 (158)
..+...++.. + +-...+.++++++..+++++......++.+. ++. ... ..+++ +.+.+. +
T Consensus 133 ~~~~~~~g~~vlI~g--~-~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~-~~~---~g~--~~~~~~~~~~~~~~i~~~ 203 (324)
T cd08292 133 DFLGVKPGQWLIQNA--A-GGAVGKLVAMLAAARGINVINLVRRDAGVAE-LRA---LGI--GPVVSTEQPGWQDKVREA 203 (324)
T ss_pred HhhCCCCCCEEEEcc--c-ccHHHHHHHHHHHHCCCeEEEEecCHHHHHH-HHh---cCC--CEEEcCCCchHHHHHHHH
Confidence 0112222211 1 2344578899999999876444333333222 222 122 22222 233455 7
Q ss_pred CCccCcCccccCCCC
Q 040822 142 KPRVGPWSCMDKIPS 156 (158)
Q Consensus 142 t~g~g~d~v~d~~~~ 156 (158)
++++|+|+|+|++++
T Consensus 204 ~~~~~~d~v~d~~g~ 218 (324)
T cd08292 204 AGGAPISVALDSVGG 218 (324)
T ss_pred hCCCCCcEEEECCCC
Confidence 899999999999876
No 35
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.23 E-value=4.5e-10 Score=82.86 Aligned_cols=77 Identities=27% Similarity=0.474 Sum_probs=49.3
Q ss_pred CEEEEEcCC--CceeeeehhhhhccceeEEeeecCC---HHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHHcC
Q 040822 54 GVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG---TQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 54 g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~~~ 125 (158)
|+++.++.+ ...+++...++. ++++.+++.+ + ..++++++++++++.++ + +.+.|+++++++|++.++++
T Consensus 280 G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~ 357 (365)
T cd08277 280 GVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFG-GFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSG 357 (365)
T ss_pred CEEEEEcCCCccccccCHhHHhh-CCEEEeeecC-CCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCC
Confidence 455555543 122333333333 5677776655 3 34567889999988765 3 44789999999999998877
Q ss_pred CcceeEEE
Q 040822 126 DVKYRFVI 133 (158)
Q Consensus 126 ~~~~k~vl 133 (158)
. ..|.++
T Consensus 358 ~-~~k~~i 364 (365)
T cd08277 358 E-CIRTVI 364 (365)
T ss_pred C-CceEee
Confidence 6 346553
No 36
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.21 E-value=5.5e-10 Score=83.65 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCCcceeEEEEeCcc
Q 040822 87 GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRDVKYRFVIDIGQH 138 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~ 138 (158)
...++++++++++++++++ +.+++++++++++++.+. ++..+|.++.+.+.
T Consensus 318 ~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~~~~ 371 (410)
T cd08238 318 NTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYTQKP 371 (410)
T ss_pred CHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEEECCCC
Confidence 4455678999999999986 447899999999999998 66778998876443
No 37
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.21 E-value=3.5e-10 Score=82.96 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=59.6
Q ss_pred cCCEEEEEcCC--Ccee-----eeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822 52 IAGVYVIVEVP--KEVK-----FKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYVNGA 118 (158)
Q Consensus 52 ~~g~~v~~g~~--~~~~-----~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a 118 (158)
.+|+++.+|.+ .... .+...++.+++++.++..+ .. ..+++++++++++.+++.+ .+++++++++|
T Consensus 250 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A 328 (348)
T PLN03154 250 IHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQS-DYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAA 328 (348)
T ss_pred cCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHH-HHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHH
Confidence 35566666544 1111 1333455566777776544 21 2356788999999999766 58999999999
Q ss_pred HHHHHcCCcceeEEEEeCc
Q 040822 119 LERLENRDVKYRFVIDIGQ 137 (158)
Q Consensus 119 ~~~~~~~~~~~k~vl~~~~ 137 (158)
++.+++++..||.++.+.+
T Consensus 329 ~~~l~~g~~~GKvVl~~~~ 347 (348)
T PLN03154 329 LVGLFSGKNVGKQVIRVAK 347 (348)
T ss_pred HHHHHcCCCCceEEEEecC
Confidence 9999999999999988754
No 38
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.19 E-value=4.3e-11 Score=88.34 Aligned_cols=44 Identities=34% Similarity=0.539 Sum_probs=36.3
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~ 50 (158)
.+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|
T Consensus 55 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~c 98 (368)
T cd08300 55 LFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTP-ECGECKFC 98 (368)
T ss_pred CCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCC-CCCCChhh
Confidence 568999999999999999999999999999876433 45555544
No 39
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.16 E-value=1.5e-10 Score=84.85 Aligned_cols=33 Identities=39% Similarity=0.477 Sum_probs=30.2
Q ss_pred CCCccccccccEEEEEeCCCCC--CCCCCCEEEec
Q 040822 6 LIENCMGHEIVGAVKEVGSNVK--CFEVGDRVGVG 38 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~--~~~vGdrV~~~ 38 (158)
+.|.++|+|++|+|+++|++|+ +|++||||++.
T Consensus 61 ~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~ 95 (350)
T cd08256 61 KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISE 95 (350)
T ss_pred CCCcccCcceeEEEEEeCCCcccCCCCCCCEEEEC
Confidence 4678999999999999999999 99999999874
No 40
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.13 E-value=1.8e-09 Score=79.04 Aligned_cols=58 Identities=19% Similarity=0.293 Sum_probs=42.8
Q ss_pred cceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 76 MRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+.++.++... ....++++++++.++.+++. .+.+++++++++++.+..+...+|.+++
T Consensus 291 ~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~ 349 (350)
T cd08274 291 DLTLFGSTLG-TREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLV 349 (350)
T ss_pred ceEEEEeecC-CHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEe
Confidence 3344444444 45667788999999988764 4789999999999999877767777653
No 41
>PRK10083 putative oxidoreductase; Provisional
Probab=99.10 E-value=4.1e-09 Score=76.87 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCC-cceeEEEEeC
Q 040822 89 QETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRD-VKYRFVIDIG 136 (158)
Q Consensus 89 ~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~-~~~k~vl~~~ 136 (158)
..+++++++++++.+++ +.+.+++++++++++.++++. ..+|.++++.
T Consensus 287 ~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~ 338 (339)
T PRK10083 287 NKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFA 338 (339)
T ss_pred hhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecC
Confidence 44678899999998886 458899999999999987543 4578887664
No 42
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.10 E-value=4.3e-09 Score=76.73 Aligned_cols=58 Identities=29% Similarity=0.379 Sum_probs=43.2
Q ss_pred cceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 76 MRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+.++.+.... ....++.++++++++.+++.++.+++++++++++.++++...+|.++.
T Consensus 282 ~~~~~~~~~~-~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~~ 339 (340)
T cd05284 282 EISVIGSLWG-TRAELVEVVALAESGKVKVEITKFPLEDANEALDRLREGRVTGRAVLV 339 (340)
T ss_pred ceEEEEEecc-cHHHHHHHHHHHHhCCCCcceEEEeHHHHHHHHHHHHcCCccceEEec
Confidence 3344443333 445567888999999888767889999999999999888777777653
No 43
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.09 E-value=1.5e-10 Score=84.59 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=75.1
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCc-----ee-------eee---
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKE-----VK-------FKT--- 69 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~-----~~-------~~~--- 69 (158)
.++|.++|+|++|+|+++|++|++|++||||++.. ..+++|+....+.+ ..+|+. .. .+.
T Consensus 66 ~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~----~~~ae~~~v~~~~~-~~iP~~~~~~~~~~~~a~~~~~~~ta 140 (345)
T cd08293 66 APWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN----WPWQTYAVLDGSSL-EKVDPQLVDGHLSYFLGAVGLPGLTA 140 (345)
T ss_pred CCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC----CCceeEEEecHHHe-EEcCccccccchhHHhhhcCcHHHHH
Confidence 35678999999999999999999999999997642 13445544432211 223311 00 000
Q ss_pred -hhhh-----h-c--cceeEEeeecCCHHHHHHHHHHHHhCCc-ccceEEEecccHHHHHHHHHc-CCcceeEEEEe---
Q 040822 70 -VNLI-----M-E--MRTIAGSIVGGGTQETKEMVEFCAENGI-YPEIEIIPIQYVNGALERLEN-RDVKYRFVIDI--- 135 (158)
Q Consensus 70 -~~~~-----~-~--~~~i~g~~~~~~~~~~~~~~~l~~~~~i-~~~i~v~~~~~~~~a~~~~~~-~~~~~k~vl~~--- 135 (158)
..+. . + +..++... +-...+.++|+++..++ +++....+ ++..+.+++ .... .+++.
T Consensus 141 ~~al~~~~~~~~g~~~~VlI~ga---~g~vG~~aiqlAk~~G~~~Vi~~~~s----~~~~~~~~~~lGa~--~vi~~~~~ 211 (345)
T cd08293 141 LIGIQEKGHITPGANQTMVVSGA---AGACGSLAGQIGRLLGCSRVVGICGS----DEKCQLLKSELGFD--AAINYKTD 211 (345)
T ss_pred HHHHHHhccCCCCCCCEEEEECC---CcHHHHHHHHHHHHcCCCEEEEEcCC----HHHHHHHHHhcCCc--EEEECCCC
Confidence 0110 0 1 12222222 23445778999999887 44332222 222333322 2221 22332
Q ss_pred --Ccccc-cCCccCcCccccCCCC
Q 040822 136 --GQHLE-LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 136 --~~~~~-~t~g~g~d~v~d~~~~ 156 (158)
.+.++ +++ +|+|+|+|++++
T Consensus 212 ~~~~~i~~~~~-~gvd~vid~~g~ 234 (345)
T cd08293 212 NVAERLRELCP-EGVDVYFDNVGG 234 (345)
T ss_pred CHHHHHHHHCC-CCceEEEECCCc
Confidence 33355 565 799999999876
No 44
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.07 E-value=9.4e-09 Score=74.89 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822 87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI 135 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~ 135 (158)
....++.+++++.++.+++.++.+++++++++++.+..+...+|.++++
T Consensus 288 ~~~~~~~~~~l~~~g~l~~~v~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 336 (338)
T PRK09422 288 TRQDLEEAFQFGAEGKVVPKVQLRPLEDINDIFDEMEQGKIQGRMVIDF 336 (338)
T ss_pred CHHHHHHHHHHHHhCCCCccEEEEcHHHHHHHHHHHHcCCccceEEEec
Confidence 3455678889999998877677789999999999998887778887654
No 45
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.06 E-value=9.9e-10 Score=80.83 Aligned_cols=36 Identities=36% Similarity=0.462 Sum_probs=31.7
Q ss_pred CCCCccccccccEEEEEeCCCCCC------CCCCCEEEecCC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKC------FEVGDRVGVGPY 40 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~------~~vGdrV~~~~~ 40 (158)
..+|.++|+|++|+|+++|++|+. |++||+|++.+.
T Consensus 52 ~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~ 93 (361)
T cd08231 52 VPLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVG 93 (361)
T ss_pred CCCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEccc
Confidence 457889999999999999999986 999999987643
No 46
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.03 E-value=8e-10 Score=80.65 Aligned_cols=34 Identities=50% Similarity=0.769 Sum_probs=30.8
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
..|.++|+|++|+|+++|++++.|++||+|++..
T Consensus 52 ~~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~ 85 (343)
T cd08235 52 KPPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAP 85 (343)
T ss_pred CCCcccccceEEEEEeeCCCCCCCCCCCEEEEcc
Confidence 4578999999999999999999999999998863
No 47
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.03 E-value=1.3e-09 Score=80.96 Aligned_cols=34 Identities=44% Similarity=0.676 Sum_probs=31.0
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
++|.++|+|++|+|+++|+++++|++||||++..
T Consensus 53 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 86 (386)
T cd08283 53 KKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPF 86 (386)
T ss_pred CCCccccccceEEEEEeCCCCCCCCCCCEEEEcC
Confidence 3588999999999999999999999999998764
No 48
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.01 E-value=2.4e-09 Score=78.27 Aligned_cols=34 Identities=50% Similarity=0.685 Sum_probs=30.9
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
.++|.++|+|++|+|+++|+++++|++||+|++.
T Consensus 52 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~ 85 (347)
T cd05278 52 AKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVP 85 (347)
T ss_pred CCCCceeccceEEEEEEECCCccccCCCCEEEec
Confidence 4558899999999999999999999999999874
No 49
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.01 E-value=1.8e-08 Score=73.59 Aligned_cols=60 Identities=33% Similarity=0.616 Sum_probs=44.6
Q ss_pred ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822 75 EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI 135 (158)
Q Consensus 75 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~ 135 (158)
++..+.+...+ ....+++++++++++.+.+.++.+++++++++++.+..+...+|.++++
T Consensus 282 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 282 RGITIVGSLVG-TRQDLQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred cccEEEEeccC-CHHHHHHHHHHHHcCCCcceeEEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 34444443333 3566778889999998877667899999999999998887778887653
No 50
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.00 E-value=1.7e-08 Score=73.41 Aligned_cols=47 Identities=28% Similarity=0.475 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 88 TQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 88 ~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
...+..++++++++.+.+.+.++++++++++++.+.++...+|.+++
T Consensus 291 ~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 337 (338)
T cd08254 291 PEDLPEVLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLV 337 (338)
T ss_pred HHHHHHHHHHHHcCCCcccceeEcHHHHHHHHHHHHcCCccceEEEe
Confidence 44566788888888887657789999999999999888877787754
No 51
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=98.99 E-value=2.3e-08 Score=72.61 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 87 GTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
....+..++++++++.+++. ...+++++++++++.+..+...+|.+++
T Consensus 293 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 341 (342)
T cd08266 293 TKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLT 341 (342)
T ss_pred CHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEe
Confidence 34455678888888888754 4789999999999998877666777653
No 52
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.99 E-value=2e-09 Score=78.95 Aligned_cols=34 Identities=53% Similarity=0.666 Sum_probs=30.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.|.++|+|++|+|+++|+++++|++||+|++.+
T Consensus 52 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 85 (351)
T cd08285 52 RHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPA 85 (351)
T ss_pred CCCcccCcceEEEEEEecCCcCccCCCCEEEEcC
Confidence 4588999999999999999999999999998754
No 53
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=98.97 E-value=2.4e-08 Score=73.21 Aligned_cols=57 Identities=33% Similarity=0.460 Sum_probs=42.2
Q ss_pred cceeEEeeecCCHHHHHHHHHHHHhCCccc-ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 76 MRTIAGSIVGGGTQETKEMVEFCAENGIYP-EIEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
...+.+.... ....+.+++++++++.+++ .+..+++++++++++.+..+...+|.++
T Consensus 291 ~~~i~~~~~~-~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv 348 (350)
T cd08240 291 ALTIQGSYVG-SLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVL 348 (350)
T ss_pred CcEEEEcccC-CHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEe
Confidence 3344444444 4556678889999998875 4578999999999999988777777765
No 54
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=98.97 E-value=1.1e-09 Score=79.18 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=77.9
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee------ee-----hhhh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF------KT-----VNLI 73 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~------~~-----~~~~ 73 (158)
+..|.++|+|++|+|+++|+++++|++||+|++........+.+++...... ++.+|..+.. .. ..+.
T Consensus 57 ~~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~-~~~lp~~~~~~~a~~~~~~~~ta~~~~ 135 (324)
T cd08244 57 PELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDS-LHPVPDGLDLEAAVAVVHDGRTALGLL 135 (324)
T ss_pred CCCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceeeEEEEEchHH-eEeCCCCCCHHHHhhhcchHHHHHHHH
Confidence 3457899999999999999999999999999886411112344454443222 2233421111 10 0010
Q ss_pred ------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-c
Q 040822 74 ------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-L 141 (158)
Q Consensus 74 ------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~ 141 (158)
.....++.. + .....+.++++++..+++++.. .+-++. .+.+.+... ..+++. .+.+. .
T Consensus 136 ~~~~~~~~~~vlI~g--~-~~~~g~~~~~la~~~g~~v~~~-~~~~~~---~~~~~~~g~--~~~~~~~~~~~~~~~~~~ 206 (324)
T cd08244 136 DLATLTPGDVVLVTA--A-AGGLGSLLVQLAKAAGATVVGA-AGGPAK---TALVRALGA--DVAVDYTRPDWPDQVREA 206 (324)
T ss_pred HhcCCCCCCEEEEEc--C-CchHHHHHHHHHHHCCCEEEEE-eCCHHH---HHHHHHcCC--CEEEecCCccHHHHHHHH
Confidence 111222211 1 2234467889999998875332 222222 222322222 222332 23345 6
Q ss_pred CCccCcCccccCCCCC
Q 040822 142 KPRVGPWSCMDKIPSR 157 (158)
Q Consensus 142 t~g~g~d~v~d~~~~~ 157 (158)
++++++|+|+|+++++
T Consensus 207 ~~~~~~d~vl~~~g~~ 222 (324)
T cd08244 207 LGGGGVTVVLDGVGGA 222 (324)
T ss_pred cCCCCceEEEECCChH
Confidence 7888999999998763
No 55
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=98.96 E-value=2.9e-09 Score=78.58 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=30.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
...|.++|+|++|+|+++|+++..|++||||++.
T Consensus 53 ~~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~ 86 (365)
T cd08278 53 TPLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLS 86 (365)
T ss_pred CCCCcccccceeEEEEEeCCCcccCCCCCEEEEc
Confidence 3467899999999999999999999999999864
No 56
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=98.94 E-value=1.5e-09 Score=78.47 Aligned_cols=141 Identities=19% Similarity=0.174 Sum_probs=78.7
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceee--------eeh----hh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF--------KTV----NL 72 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~--------~~~----~~ 72 (158)
+++|.++|+|++|+|+++|+++++|++||+|++.... ..+.++...... .+..+|..+.. ... .+
T Consensus 54 ~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--g~~~~~~~~~~~-~~~~lp~~~~~~~~a~~~~~~~ta~~~~ 130 (323)
T cd05282 54 PPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGGE--GTWQEYVVAPAD-DLIPVPDSISDEQAAMLYINPLTAWLML 130 (323)
T ss_pred CCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCCC--CcceeEEecCHH-HeEECCCCCCHHHHHHHhccHHHHHHHH
Confidence 3567899999999999999999999999999886511 134444443321 12233411111 000 00
Q ss_pred ------hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-
Q 040822 73 ------IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE- 140 (158)
Q Consensus 73 ------~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~- 140 (158)
..++..++.. . +....+.++++++..+++++...-+.++ .+.+++... ..+++ +.+.+.
T Consensus 131 ~~~~~~~~~~~vlI~g--~-~~~vg~~~~~~a~~~g~~v~~~~~~~~~----~~~~~~~g~--~~~~~~~~~~~~~~~~~ 201 (323)
T cd05282 131 TEYLKLPPGDWVIQNA--A-NSAVGRMLIQLAKLLGFKTINVVRRDEQ----VEELKALGA--DEVIDSSPEDLAQRVKE 201 (323)
T ss_pred HHhccCCCCCEEEEcc--c-ccHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHhcCC--CEEecccchhHHHHHHH
Confidence 0111222211 1 2234577889999998876443333222 222222222 12222 233455
Q ss_pred cCCccCcCccccCCCCC
Q 040822 141 LKPRVGPWSCMDKIPSR 157 (158)
Q Consensus 141 ~t~g~g~d~v~d~~~~~ 157 (158)
.+.++++|+|+|+++++
T Consensus 202 ~~~~~~~d~vl~~~g~~ 218 (323)
T cd05282 202 ATGGAGARLALDAVGGE 218 (323)
T ss_pred HhcCCCceEEEECCCCH
Confidence 78889999999998763
No 57
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=98.94 E-value=2.8e-09 Score=77.67 Aligned_cols=33 Identities=45% Similarity=0.671 Sum_probs=29.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
.+|.++|+|++|+|+++|++++.|++||||++.
T Consensus 52 ~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~ 84 (337)
T cd08261 52 SYPRILGHELSGEVVEVGEGVAGLKVGDRVVVD 84 (337)
T ss_pred CCCcccccccEEEEEEeCCCCCCCCCCCEEEEC
Confidence 347889999999999999999999999999874
No 58
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.93 E-value=5.7e-09 Score=76.27 Aligned_cols=32 Identities=44% Similarity=0.567 Sum_probs=29.5
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGV 37 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~ 37 (158)
+.|.++|+|++|+|+++|++|..|++||||++
T Consensus 52 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~ 83 (345)
T cd08287 52 RAPAPIGHEFVGVVEEVGSEVTSVKPGDFVIA 83 (345)
T ss_pred CCCcccccceEEEEEEeCCCCCccCCCCEEEe
Confidence 34789999999999999999999999999977
No 59
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=98.92 E-value=6.7e-09 Score=75.86 Aligned_cols=33 Identities=45% Similarity=0.627 Sum_probs=30.3
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.|.++|+|++|+|.++|++|+.|++||||++..
T Consensus 53 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 85 (344)
T cd08284 53 PGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPF 85 (344)
T ss_pred CCcccccceEEEEEeeCCCccccCCCCEEEEcc
Confidence 478899999999999999999999999998764
No 60
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=98.90 E-value=8.9e-09 Score=75.11 Aligned_cols=142 Identities=19% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeee--------e----hhh--
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFK--------T----VNL-- 72 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~--------~----~~~-- 72 (158)
.|.++|+|++|+|+++|++++.|++||+|++.... ...+.++....... +..+|..+... . ..+
T Consensus 63 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~g~~~~~~~v~~~~-~~~lp~~~~~~~aa~~~~~~~ta~~~l~~ 140 (341)
T cd08290 63 PPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPG-LGTWRTHAVVPADD-LIKVPNDVDPEQAATLSVNPCTAYRLLED 140 (341)
T ss_pred CCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCCC-CccchheEeccHHH-eEeCCCCCCHHHHHHhhccHHHHHHHHHh
Confidence 57799999999999999999999999999876431 12344554443221 22344221110 0 001
Q ss_pred ----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC--------cccc
Q 040822 73 ----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG--------QHLE 140 (158)
Q Consensus 73 ----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~--------~~~~ 140 (158)
..+...++.. + .-...+.++++++..+++.+....+.++.++..+.+.+-... .++... +.+.
T Consensus 141 ~~~~~~g~~vlI~g--~-~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~i~ 215 (341)
T cd08290 141 FVKLQPGDWVIQNG--A-NSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGAD--HVLTEEELRSLLATELLK 215 (341)
T ss_pred hcccCCCCEEEEcc--c-hhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCC--EEEeCcccccccHHHHHH
Confidence 0111112111 1 233457788999999987654444433222333333322221 222222 2244
Q ss_pred -cCCccCcCccccCCCC
Q 040822 141 -LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 141 -~t~g~g~d~v~d~~~~ 156 (158)
.+++ ++|.|+|++++
T Consensus 216 ~~~~~-~~d~vld~~g~ 231 (341)
T cd08290 216 SAPGG-RPKLALNCVGG 231 (341)
T ss_pred HHcCC-CceEEEECcCc
Confidence 4565 89999998875
No 61
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.90 E-value=1.1e-08 Score=74.82 Aligned_cols=43 Identities=44% Similarity=0.791 Sum_probs=33.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~ 49 (158)
.+|.++|+|++|+|+++|++++.|++||+|++.+.. +|+.|.+
T Consensus 53 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~ 95 (343)
T cd05285 53 KEPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGV-PCRTCEF 95 (343)
T ss_pred CCCcccCcceeEEEEeeCCCCCCCCCCCEEEEcccc-CCCCChh
Confidence 357789999999999999999999999999875332 4444443
No 62
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.90 E-value=7.6e-08 Score=69.06 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=42.1
Q ss_pred cceeEEeeecCC----HHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 76 MRTIAGSIVGGG----TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 76 ~~~i~g~~~~~~----~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+.++.+.... . ...+..++++++++.+++.+ ..+++++++++++.+.++...+|.+++
T Consensus 242 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~ 304 (305)
T cd08270 242 GRRLYTFFLY-DGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLD 304 (305)
T ss_pred cceEEEEEcc-CHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence 4445554433 2 23456778888899888643 689999999999999888777888764
No 63
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=98.90 E-value=1.2e-08 Score=75.33 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=31.2
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY 40 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~ 40 (158)
.+|.++|+|++|+|+++|++|+++++||||++...
T Consensus 52 ~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~ 86 (365)
T cd05279 52 PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFG 86 (365)
T ss_pred CCCcccccceeEEEEEeCCCcccCCCCCEEEEcCC
Confidence 45789999999999999999999999999987643
No 64
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=98.90 E-value=8.3e-09 Score=76.45 Aligned_cols=34 Identities=47% Similarity=0.615 Sum_probs=30.6
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
++|.++|+|++|+|+++|+++..|++||||++..
T Consensus 52 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 85 (375)
T cd08282 52 EPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPF 85 (375)
T ss_pred CCCceeccccEEEEEEeCCCCCcCCCCCEEEEeC
Confidence 4588999999999999999999999999997643
No 65
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=98.90 E-value=1.1e-08 Score=76.00 Aligned_cols=44 Identities=36% Similarity=0.599 Sum_probs=35.1
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~ 49 (158)
+++|.++|+|++|+|+++|++++.|++||||++.+.. .|+.|..
T Consensus 85 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~ 128 (384)
T cd08265 85 TEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMM-WCGMCRA 128 (384)
T ss_pred cCCCcccccceEEEEEEECCCCCCCCCCCEEEECCCC-CCCCChh
Confidence 3568899999999999999999999999999875433 4544433
No 66
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=98.90 E-value=6.3e-08 Score=70.33 Aligned_cols=46 Identities=30% Similarity=0.453 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEE
Q 040822 87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
....+++++++++++.+++.++++++++++++++.++.....+|.+
T Consensus 283 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v 328 (329)
T cd08298 283 TRQDGEEFLKLAAEIPIKPEVETYPLEEANEALQDLKEGRIRGAAV 328 (329)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEEeHHHHHHHHHHHHcCCCcceee
Confidence 3455678889999998887678899999999999998877776664
No 67
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.89 E-value=8.3e-08 Score=70.05 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhCCccc--c-eEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 87 GTQETKEMVEFCAENGIYP--E-IEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~--~-i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
....+++++++++++.+++ + .+.+++++++++++.+.++...+|.++
T Consensus 291 ~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv 340 (341)
T cd08262 291 TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILV 340 (341)
T ss_pred cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEe
Confidence 3445678889999998874 2 478999999999999988777777764
No 68
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=98.88 E-value=1.1e-08 Score=75.56 Aligned_cols=34 Identities=47% Similarity=0.573 Sum_probs=30.5
Q ss_pred CCCCccccccccEEEEEeCCCCCC---CCCCCEEEec
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKC---FEVGDRVGVG 38 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~---~~vGdrV~~~ 38 (158)
..+|.++|+|++|+|+++|+++++ |++||||++.
T Consensus 51 ~~~p~~~g~e~~G~v~~vG~~~~~~~~~~~Gd~V~~~ 87 (367)
T cd08263 51 FPPPFVLGHEISGEVVEVGPNVENPYGLSVGDRVVGS 87 (367)
T ss_pred CCCCcccccccceEEEEeCCCCCCCCcCCCCCEEEEc
Confidence 356789999999999999999988 9999999874
No 69
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.88 E-value=5.6e-09 Score=73.40 Aligned_cols=36 Identities=44% Similarity=0.569 Sum_probs=32.0
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY 40 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~ 40 (158)
...|.++|+|++|+|.++|++++.|++||+|++...
T Consensus 27 ~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~ 62 (271)
T cd05188 27 PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPN 62 (271)
T ss_pred CCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCC
Confidence 345889999999999999999999999999987653
No 70
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=98.87 E-value=9.2e-09 Score=75.15 Aligned_cols=35 Identities=49% Similarity=0.670 Sum_probs=31.2
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY 40 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~ 40 (158)
.+|.++|+|++|+|+++|+++++|++||+|++...
T Consensus 56 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 90 (341)
T PRK05396 56 PVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGH 90 (341)
T ss_pred CCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCC
Confidence 35779999999999999999999999999987643
No 71
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=98.86 E-value=1.5e-08 Score=72.92 Aligned_cols=136 Identities=17% Similarity=0.099 Sum_probs=77.4
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCce---eee--e---h--hh----
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEV---KFK--T---V--NL---- 72 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~---~~~--~---~--~~---- 72 (158)
+|.++|+|++|+|+++|++++.|++||+|++.... ++.+++..... .++.+|..+ ... . + .+
T Consensus 51 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~g---~~~~~~~v~~~-~~~~lP~~~~~~~~~~~~~~~a~~~~~~~~ 126 (312)
T cd08269 51 EPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSGG---AFAEYDLADAD-HAVPLPSLLDGQAFPGEPLGCALNVFRRGW 126 (312)
T ss_pred CCcccceeeEEEEEEECCCCcCCCCCCEEEEecCC---cceeeEEEchh-heEECCCchhhhHHhhhhHHHHHHHHHhcC
Confidence 47899999999999999999999999999876422 34455544432 222344211 000 0 0 00
Q ss_pred -hhccceeEEeeecCCHHHHHHHHHHHHhCCcc-cceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cCCc
Q 040822 73 -IMEMRTIAGSIVGGGTQETKEMVEFCAENGIY-PEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LKPR 144 (158)
Q Consensus 73 -~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~-~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t~g 144 (158)
..+...++. + .-...+.++++++..+++ +++.... ++ ..+.+.+... ..++. +.+.+. ++.+
T Consensus 127 ~~~~~~vlI~---g-~g~vg~~~~~la~~~g~~~v~~~~~~-~~---~~~~~~~~g~--~~~~~~~~~~~~~~l~~~~~~ 196 (312)
T cd08269 127 IRAGKTVAVI---G-AGFIGLLFLQLAAAAGARRVIAIDRR-PA---RLALARELGA--TEVVTDDSEAIVERVRELTGG 196 (312)
T ss_pred CCCCCEEEEE---C-CCHHHHHHHHHHHHcCCcEEEEECCC-HH---HHHHHHHhCC--ceEecCCCcCHHHHHHHHcCC
Confidence 011222222 2 223557788999999887 5432222 22 2222222222 22222 233455 6888
Q ss_pred cCcCccccCCCC
Q 040822 145 VGPWSCMDKIPS 156 (158)
Q Consensus 145 ~g~d~v~d~~~~ 156 (158)
+|+|+++|+.++
T Consensus 197 ~~vd~vld~~g~ 208 (312)
T cd08269 197 AGADVVIEAVGH 208 (312)
T ss_pred CCCCEEEECCCC
Confidence 999999998864
No 72
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=98.85 E-value=1.4e-08 Score=75.24 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
.+|.++|||++|+|+++|++++.|++||||++... ..|+.|.+|+
T Consensus 59 ~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-~~c~~c~~c~ 103 (373)
T cd08299 59 PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFV-PQCGKCRACL 103 (373)
T ss_pred CCCccccccceEEEEEeCCCCccCCCCCEEEECCC-CCCCCChhhh
Confidence 46789999999999999999999999999987642 2455555543
No 73
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=98.84 E-value=1.4e-07 Score=68.60 Aligned_cols=58 Identities=21% Similarity=0.321 Sum_probs=43.2
Q ss_pred cceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 76 MRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 76 ~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+.++.+.... ....+++++++++++.+++. .+.+++++++++++.++++...+|.+++
T Consensus 274 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (334)
T PRK13771 274 DIEIIGHISA-TKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVK 332 (334)
T ss_pred ccEEEEecCC-CHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEe
Confidence 4444444444 45667788999999988754 4789999999999999887777777654
No 74
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=98.84 E-value=6.3e-09 Score=75.71 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=37.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccCC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIAG 54 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~g 54 (158)
.++|.++|+|++|+|+++|++|+.|++||||++.... ....+++++....
T Consensus 56 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~ 106 (336)
T TIGR02817 56 AGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDE 106 (336)
T ss_pred CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccceEEEcH
Confidence 3467899999999999999999999999999875311 1234556655543
No 75
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=98.83 E-value=9e-09 Score=75.19 Aligned_cols=33 Identities=52% Similarity=0.791 Sum_probs=30.3
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.|.++|+|++|+|+++|+++..|++||||++.+
T Consensus 52 ~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~ 84 (343)
T cd08236 52 PPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNP 84 (343)
T ss_pred CCcccCcceEEEEEEECCCCCcCCCCCEEEEcC
Confidence 578899999999999999999999999998863
No 76
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.83 E-value=4e-08 Score=69.69 Aligned_cols=37 Identities=38% Similarity=0.327 Sum_probs=33.4
Q ss_pred CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+|.++|.++|+|++|+|+++|+++++|++||||++..
T Consensus 16 ~~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 52 (277)
T cd08255 16 EKLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCFG 52 (277)
T ss_pred ccCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEecC
Confidence 4667899999999999999999999999999998753
No 77
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=98.82 E-value=1.6e-07 Score=68.11 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 87 GTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
....+++++++++++.+++. .+++++++++++++.+..+...+|.++
T Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~ 331 (332)
T cd08259 284 TKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVL 331 (332)
T ss_pred CHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEe
Confidence 34556778888888888754 468999999999999988776677653
No 78
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=98.82 E-value=2.4e-08 Score=73.65 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=31.2
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.++|.++|+|++|+|+++|++++.|++||||++.+
T Consensus 51 ~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 85 (363)
T cd08279 51 APLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSW 85 (363)
T ss_pred CCCCccccccceEEEEEeCCCccccCCCCEEEECC
Confidence 35677999999999999999999999999998754
No 79
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=98.82 E-value=1.9e-07 Score=67.71 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEEeCccc
Q 040822 92 KEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVIDIGQHL 139 (158)
Q Consensus 92 ~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~ 139 (158)
++++++..++.+++. .+.+++++++++++.+..+...+|.++++.+.+
T Consensus 284 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~~~ 332 (334)
T PTZ00354 284 REVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEPL 332 (334)
T ss_pred HHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCCCC
Confidence 456677778877753 478999999999999888776788887775543
No 80
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=98.81 E-value=1.8e-08 Score=73.65 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=30.2
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
++|.++|+|++|+|+++|++|++|++||+|++..
T Consensus 54 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 87 (340)
T TIGR00692 54 KPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVET 87 (340)
T ss_pred CCCcccccceEEEEEEECCCCCcCCCCCEEEECC
Confidence 3467899999999999999999999999998753
No 81
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=98.81 E-value=3.1e-08 Score=72.43 Aligned_cols=33 Identities=52% Similarity=0.699 Sum_probs=30.2
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+|.++|+|++|+|+++|++++.|++||||++..
T Consensus 54 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~ 86 (345)
T cd08286 54 PGRILGHEGVGVVEEVGSAVTNFKVGDRVLISC 86 (345)
T ss_pred CCceecccceEEEEEeccCccccCCCCEEEECC
Confidence 378999999999999999999999999998764
No 82
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=98.80 E-value=9.1e-09 Score=73.45 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=76.7
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeeeh------------hh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKTV------------NL 72 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~------------~~ 72 (158)
+++|.++|+|++|+|.++|+++++|++||+|++........+.+++..... .++.+|..++.... .+
T Consensus 35 ~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l 113 (303)
T cd08251 35 PPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVTVPED-QVVRKPASLSFEEACALPVVFLTVIDAF 113 (303)
T ss_pred CCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEEccHH-HeEECCCCCCHHHHHHhHHHHHHHHHHH
Confidence 346889999999999999999999999999987642111233444444322 12234422211100 00
Q ss_pred -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-c
Q 040822 73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-L 141 (158)
Q Consensus 73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~ 141 (158)
..++..++. .+ .....+.++++++..+++++..... .+..+.++.... ..+++ +.+.+. +
T Consensus 114 ~~~~~~~g~~vli~--~~-~~~~g~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~~g~--~~~~~~~~~~~~~~i~~~ 184 (303)
T cd08251 114 ARAGLAKGEHILIQ--TA-TGGTGLMAVQLARLKGAEIYATASS----DDKLEYLKQLGV--PHVINYVEEDFEEEIMRL 184 (303)
T ss_pred HhcCCCCCCEEEEe--cC-CcHHHHHHHHHHHHcCCEEEEEcCC----HHHHHHHHHcCC--CEEEeCCCccHHHHHHHH
Confidence 011111221 12 2334467788898888864322222 222333322222 22223 223355 6
Q ss_pred CCccCcCccccCCCC
Q 040822 142 KPRVGPWSCMDKIPS 156 (158)
Q Consensus 142 t~g~g~d~v~d~~~~ 156 (158)
++++++|.++|++++
T Consensus 185 ~~~~~~d~v~~~~~~ 199 (303)
T cd08251 185 TGGRGVDVVINTLSG 199 (303)
T ss_pred cCCCCceEEEECCcH
Confidence 888899999998753
No 83
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=98.80 E-value=6.7e-09 Score=75.31 Aligned_cols=133 Identities=11% Similarity=0.095 Sum_probs=72.7
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEE--EEEcCCCcee-----------e--ee-
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVY--VIVEVPKEVK-----------F--KT- 69 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~--v~~g~~~~~~-----------~--~~- 69 (158)
+.|.++|+|++|+|++ .+++|++||||++. +++++++...... .++.+|+.++ + +.
T Consensus 58 ~~p~v~G~e~~G~V~~---~~~~~~~Gd~V~~~-----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ 129 (329)
T cd08294 58 EGDTMIGTQVAKVIES---KNSKFPVGTIVVAS-----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGL 129 (329)
T ss_pred CCCcEecceEEEEEec---CCCCCCCCCEEEee-----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHH
Confidence 4689999999999985 56789999999763 2344555554331 2233442221 0 00
Q ss_pred ---hhhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----
Q 040822 70 ---VNLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI----- 135 (158)
Q Consensus 70 ---~~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~----- 135 (158)
..+. .++..++... +-...+.++++++..+++++....+ + +..+.+++... ..+++.
T Consensus 130 ta~~al~~~~~~~~g~~vlI~ga---~g~vG~~aiqlA~~~G~~vi~~~~s-~---~~~~~l~~~Ga--~~vi~~~~~~~ 200 (329)
T cd08294 130 TAYFGLLEICKPKAGETVVVNGA---AGAVGSLVGQIAKIKGCKVIGCAGS-D---DKVAWLKELGF--DAVFNYKTVSL 200 (329)
T ss_pred HHHHHHHHhcCCCCCCEEEEecC---ccHHHHHHHHHHHHcCCEEEEEeCC-H---HHHHHHHHcCC--CEEEeCCCccH
Confidence 0110 1122222221 2234577899999998874332222 2 23343443333 223333
Q ss_pred Ccccc-cCCccCcCccccCCCC
Q 040822 136 GQHLE-LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 136 ~~~~~-~t~g~g~d~v~d~~~~ 156 (158)
.+.+. .++ +|+|+|+|++|+
T Consensus 201 ~~~v~~~~~-~gvd~vld~~g~ 221 (329)
T cd08294 201 EEALKEAAP-DGIDCYFDNVGG 221 (329)
T ss_pred HHHHHHHCC-CCcEEEEECCCH
Confidence 23344 455 799999999875
No 84
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=98.79 E-value=7.2e-09 Score=75.19 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeee------------hhhh
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKT------------VNLI 73 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~~ 73 (158)
..|.++|+|++|+|.++|++|+.+++||||++.... ...+++++..... .++.+|..++... ..+.
T Consensus 56 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-~g~~~~~v~v~~~-~~~~lp~~~~~~~~~~~~~~~~ta~~~l~ 133 (327)
T PRK10754 56 SLPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSA-LGAYSSVHNVPAD-KAAILPDAISFEQAAASFLKGLTVYYLLR 133 (327)
T ss_pred CCCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCC-CcceeeEEEcCHH-HceeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999999754321 1234455444321 1222342221110 0000
Q ss_pred ------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEe-----Ccccc-c
Q 040822 74 ------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDI-----GQHLE-L 141 (158)
Q Consensus 74 ------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~-----~~~~~-~ 141 (158)
.+...++.. + .-.-.+.++++++..+++++....+.+ ..+.++.... ..+++. .+.++ .
T Consensus 134 ~~~~~~~g~~vlI~g--~-~g~ig~~~~~lak~~G~~v~~~~~~~~----~~~~~~~~g~--~~~~~~~~~~~~~~~~~~ 204 (327)
T PRK10754 134 KTYEIKPDEQFLFHA--A-AGGVGLIACQWAKALGAKLIGTVGSAQ----KAQRAKKAGA--WQVINYREENIVERVKEI 204 (327)
T ss_pred hhcCCCCCCEEEEEe--C-CcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHCCC--CEEEcCCCCcHHHHHHHH
Confidence 011222211 2 223446788999999987543222222 2222222222 222332 23355 7
Q ss_pred CCccCcCccccCCCC
Q 040822 142 KPRVGPWSCMDKIPS 156 (158)
Q Consensus 142 t~g~g~d~v~d~~~~ 156 (158)
++++|+|+++|++++
T Consensus 205 ~~~~~~d~vl~~~~~ 219 (327)
T PRK10754 205 TGGKKVRVVYDSVGK 219 (327)
T ss_pred cCCCCeEEEEECCcH
Confidence 888999999998764
No 85
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.77 E-value=3e-08 Score=72.54 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=75.8
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc-ccccccccccCCEEEEEcCCCceeee------------ehh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN-SCQDCNFASIAGVYVIVEVPKEVKFK------------TVN 71 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~------------~~~ 71 (158)
..+|.++|+|++|+|+++|+++++|++||||++..... ...+.+++...... ++.+|..++.. ...
T Consensus 71 ~~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~-~~~lp~~~~~~~aa~~~~~~~ta~~~ 149 (350)
T cd08248 71 IEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENE-VSKKPKNLSHEEAASLPYAGLTAWSA 149 (350)
T ss_pred CCCCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHH-eecCCCCCCHHHHhhchhHHHHHHHH
Confidence 45688999999999999999999999999998754210 12344444443221 22344211110 000
Q ss_pred hhh----------ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc-c-c
Q 040822 72 LIM----------EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ-H-L 139 (158)
Q Consensus 72 ~~~----------~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~-~-~ 139 (158)
+.. ++..++... .-...+.++++++..+++++... + ++ ..+.++.... +.+++..+ + .
T Consensus 150 l~~~~~~~~~~~~g~~vlI~g~---~g~ig~~~~~~a~~~G~~v~~~~-~-~~---~~~~~~~~g~--~~~~~~~~~~~~ 219 (350)
T cd08248 150 LVNVGGLNPKNAAGKRVLILGG---SGGVGTFAIQLLKAWGAHVTTTC-S-TD---AIPLVKSLGA--DDVIDYNNEDFE 219 (350)
T ss_pred HHHhccCCCccCCCCEEEEECC---CChHHHHHHHHHHHCCCeEEEEe-C-cc---hHHHHHHhCC--ceEEECCChhHH
Confidence 100 122222211 12344677888998888754432 2 12 2222222222 22333322 1 2
Q ss_pred c-cCCccCcCccccCCCC
Q 040822 140 E-LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 140 ~-~t~g~g~d~v~d~~~~ 156 (158)
. ++.++++|.++|++++
T Consensus 220 ~~l~~~~~vd~vi~~~g~ 237 (350)
T cd08248 220 EELTERGKFDVILDTVGG 237 (350)
T ss_pred HHHHhcCCCCEEEECCCh
Confidence 2 4556789999998875
No 86
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=98.76 E-value=8.5e-09 Score=74.87 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=69.5
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEE---EcCCCceeee-------e------h
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVI---VEVPKEVKFK-------T------V 70 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~---~g~~~~~~~~-------~------~ 70 (158)
.|.++|+|++|+|+++| +.|++||||++.. .+.+++...+..+. ...|..+++. . .
T Consensus 57 ~~~i~G~~~~g~v~~~~---~~~~~GdrV~~~~-----~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~ 128 (325)
T TIGR02825 57 GDTMMGQQVARVVESKN---VALPKGTIVLASP-----GWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYF 128 (325)
T ss_pred CCcEecceEEEEEEeCC---CCCCCCCEEEEec-----CceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHH
Confidence 47899999999999977 4699999998742 23344433322211 1113211111 0 0
Q ss_pred hhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC------cc
Q 040822 71 NLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG------QH 138 (158)
Q Consensus 71 ~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~------~~ 138 (158)
.+. .++..++... +-...+.++|+++..+++++....+-+ ..+.++.... ..+++.. +.
T Consensus 129 ~l~~~~~~~~g~~VLI~ga---~g~vG~~aiqlAk~~G~~Vi~~~~s~~----~~~~~~~lGa--~~vi~~~~~~~~~~~ 199 (325)
T TIGR02825 129 GLLEICGVKGGETVMVNAA---AGAVGSVVGQIAKLKGCKVVGAAGSDE----KVAYLKKLGF--DVAFNYKTVKSLEET 199 (325)
T ss_pred HHHHHhCCCCCCEEEEeCC---ccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCC--CEEEeccccccHHHH
Confidence 010 1122222221 223446789999999887543332322 2333333333 2223322 22
Q ss_pred cccCCccCcCccccCCCC
Q 040822 139 LELKPRVGPWSCMDKIPS 156 (158)
Q Consensus 139 ~~~t~g~g~d~v~d~~~~ 156 (158)
+..+.++|+|+|+|++|+
T Consensus 200 ~~~~~~~gvdvv~d~~G~ 217 (325)
T TIGR02825 200 LKKASPDGYDCYFDNVGG 217 (325)
T ss_pred HHHhCCCCeEEEEECCCH
Confidence 333345799999999886
No 87
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=98.76 E-value=3.5e-08 Score=71.18 Aligned_cols=34 Identities=38% Similarity=0.617 Sum_probs=30.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
..|.++|+|++|+|+++|++++.|++||+|++..
T Consensus 54 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 87 (306)
T cd08258 54 ETPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSET 87 (306)
T ss_pred CCCeeeccceEEEEEEECCCcCcCCCCCEEEEcc
Confidence 4578999999999999999999999999998864
No 88
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.75 E-value=4.6e-07 Score=65.73 Aligned_cols=59 Identities=22% Similarity=0.237 Sum_probs=41.4
Q ss_pred ccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 75 EMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 75 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
++..+.+...+ ....++++++++.++.+.+. ...+++++++++++.+.++...+|.+++
T Consensus 276 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~ 335 (336)
T cd08276 276 KGATLRGIAVG-SRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIR 335 (336)
T ss_pred cceEEEEEecC-cHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence 34444444444 44556778888888877653 4789999999999998877666677653
No 89
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=98.73 E-value=2.1e-08 Score=74.75 Aligned_cols=32 Identities=38% Similarity=0.439 Sum_probs=29.2
Q ss_pred ccccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822 9 NCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY 40 (158)
Q Consensus 9 ~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~ 40 (158)
.++|+|++|+|+++|++++.|++||||++...
T Consensus 83 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~ 114 (393)
T cd08246 83 HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCS 114 (393)
T ss_pred cccccceEEEEEEeCCCCCcCCCCCEEEEecc
Confidence 58999999999999999999999999987653
No 90
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=98.71 E-value=4.1e-07 Score=65.98 Aligned_cols=33 Identities=42% Similarity=0.548 Sum_probs=29.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
++|.++|+|++|+|+++|++|+.|++||||++.
T Consensus 53 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~ 85 (325)
T cd08264 53 PMPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVY 85 (325)
T ss_pred CCCeecccceeEEEEEECCCCCCCCCCCEEEEC
Confidence 357789999999999999999999999999865
No 91
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=98.71 E-value=5.8e-07 Score=65.32 Aligned_cols=46 Identities=41% Similarity=0.757 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEE
Q 040822 87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
....++.++++..++.+.+.++.+++++++++++.+.++...++.+
T Consensus 284 ~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v 329 (330)
T cd08245 284 GRADLQEALDFAAEGKVKPMIETFPLDQANEAYERMEKGDVRFRFV 329 (330)
T ss_pred CHHHHHHHHHHHHcCCCcceEEEEcHHHHHHHHHHHHcCCCCccee
Confidence 3445567788888888876668899999999999988777666654
No 92
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.70 E-value=1.1e-07 Score=69.59 Aligned_cols=34 Identities=38% Similarity=0.499 Sum_probs=30.4
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.|.++|+|++|+|+++|++++.|++||+|+++.
T Consensus 56 ~~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~ 89 (341)
T cd05281 56 KPPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAET 89 (341)
T ss_pred CCCcccccceEEEEEEECCCCCCCCCCCEEEECC
Confidence 3567899999999999999999999999998863
No 93
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=98.68 E-value=2.5e-08 Score=71.75 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=31.6
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
++.|.++|+|++|+|.++|+++..|++||+|++..
T Consensus 55 ~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~ 89 (325)
T cd08253 55 PPLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTN 89 (325)
T ss_pred CCCCeecccceEEEEEeeCCCCCCCCCCCEEEEec
Confidence 45688999999999999999999999999998764
No 94
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=98.67 E-value=5.3e-08 Score=68.85 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=73.8
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeee----------e--hhh--
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFK----------T--VNL-- 72 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~----------~--~~~-- 72 (158)
.|.++|+|++|+|.++|+++++|++||+|++...+ .+.++....... ++.+|..+... . ..+
T Consensus 27 ~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~g---~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 102 (293)
T cd05195 27 DETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAPG---AFATHVRVDARL-VVKIPDSLSFEEAATLPVAYLTAYYALVD 102 (293)
T ss_pred CCCccceeeeEEEEeecCCccCCCCCCEEEEEecC---cccceEEechhh-eEeCCCCCCHHHHhhchHHHHHHHHHHHH
Confidence 57899999999999999999999999999876422 344554443222 22233111110 0 000
Q ss_pred ----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cC
Q 040822 73 ----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LK 142 (158)
Q Consensus 73 ----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t 142 (158)
..+...++. .+ .-...+.+.++++..+++.+....+.+ ..+.+.+.......+++ +.+.+. .+
T Consensus 103 ~~~~~~g~~vlv~--g~-~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (293)
T cd05195 103 LARLQKGESVLIH--AA-AGGVGQAAIQLAQHLGAEVFATVGSEE----KREFLRELGGPVDHIFSSRDLSFADGILRAT 175 (293)
T ss_pred HhccCCCCEEEEe--cC-CCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhCCCcceEeecCchhHHHHHHHHh
Confidence 011111111 11 223346678888888886433222222 22222221100011222 223455 67
Q ss_pred CccCcCccccCCCC
Q 040822 143 PRVGPWSCMDKIPS 156 (158)
Q Consensus 143 ~g~g~d~v~d~~~~ 156 (158)
.++++|.++|++++
T Consensus 176 ~~~~~d~vi~~~~~ 189 (293)
T cd05195 176 GGRGVDVVLNSLSG 189 (293)
T ss_pred CCCCceEEEeCCCc
Confidence 78899999998875
No 95
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=98.65 E-value=8.2e-08 Score=71.73 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=32.5
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~ 50 (158)
++|+|++|+|+++|++++.|++||+|++.... .|+.|.+|
T Consensus 80 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~~ 119 (398)
T TIGR01751 80 IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQ-VDLTAPDG 119 (398)
T ss_pred ecccceEEEEEEeCCCCCCCCCCCEEEEcccc-ccCCchhh
Confidence 89999999999999999999999999876533 34444444
No 96
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.64 E-value=6.8e-08 Score=69.65 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=76.4
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcc---ccccccccccCCEEEEEcCCCceeeee------------
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN---SCQDCNFASIAGVYVIVEVPKEVKFKT------------ 69 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~---~~~~~~~~~~~g~~v~~g~~~~~~~~~------------ 69 (158)
++.|.++|+|++|+|.++|+++++|++||+|++..... ...+.+++...... ++..|..++...
T Consensus 55 ~~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~-~~~~p~~~~~~~~~~~~~~~~~a~ 133 (326)
T cd08272 55 PPLPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARL-LALKPANLSMREAAALPLVGITAW 133 (326)
T ss_pred CCCCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHH-cccCCCCCCHHHHHHhHHHHHHHH
Confidence 34588999999999999999999999999998764110 11233333332211 222332211110
Q ss_pred hhhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE----eCccc
Q 040822 70 VNLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID----IGQHL 139 (158)
Q Consensus 70 ~~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~----~~~~~ 139 (158)
..+. .+...++... .....+.++++++..+++++....+ ++.+ .+..... +.+++ +.+.+
T Consensus 134 ~~l~~~~~~~~~~~vli~g~---~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~----~~~~~g~--~~~~~~~~~~~~~~ 203 (326)
T cd08272 134 EGLVDRAAVQAGQTVLIHGG---AGGVGHVAVQLAKAAGARVYATASS-EKAA----FARSLGA--DPIIYYRETVVEYV 203 (326)
T ss_pred HHHHHhcCCCCCCEEEEEcC---CCcHHHHHHHHHHHcCCEEEEEech-HHHH----HHHHcCC--CEEEecchhHHHHH
Confidence 0100 0112222211 1233467788999988886544433 3322 2222222 22223 22334
Q ss_pred c-cCCccCcCccccCCCC
Q 040822 140 E-LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 140 ~-~t~g~g~d~v~d~~~~ 156 (158)
. .+.++++|.++|++++
T Consensus 204 ~~~~~~~~~d~v~~~~~~ 221 (326)
T cd08272 204 AEHTGGRGFDVVFDTVGG 221 (326)
T ss_pred HHhcCCCCCcEEEECCCh
Confidence 5 6788899999998775
No 97
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=98.64 E-value=1.4e-07 Score=69.30 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.9
Q ss_pred CCccccccccEEEEEeCCCCC-CCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVK-CFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~-~~~vGdrV~~~~ 39 (158)
.|.++|+|++|+|+++|++|+ +|++||||++..
T Consensus 58 ~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~ 91 (352)
T cd08247 58 KEKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIY 91 (352)
T ss_pred CCCccCceeEEEEEEeCcccccCCCCCCEEEEee
Confidence 378999999999999999998 899999998764
No 98
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=98.63 E-value=6.3e-08 Score=70.78 Aligned_cols=33 Identities=42% Similarity=0.575 Sum_probs=30.4
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.|.++|+|++|+|+++|++++.|++||||+++.
T Consensus 54 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~ 86 (339)
T cd08249 54 YPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFV 86 (339)
T ss_pred CCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEe
Confidence 578899999999999999999999999998764
No 99
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=98.62 E-value=1.1e-07 Score=69.51 Aligned_cols=32 Identities=47% Similarity=0.749 Sum_probs=29.6
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEe
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGV 37 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~ 37 (158)
.+|.++|+|++|+|+++|+++..|++||+|++
T Consensus 53 ~~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~ 84 (345)
T cd08260 53 TLPHVPGHEFAGVVVEVGEDVSRWRVGDRVTV 84 (345)
T ss_pred CCCeeeccceeEEEEEECCCCccCCCCCEEEE
Confidence 44789999999999999999999999999987
No 100
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=98.60 E-value=1.5e-06 Score=62.96 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 91 TKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 91 ~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
+++++++++++.++ + +.+.+++++++++++.+..+. .+|.++
T Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi 317 (319)
T cd08242 273 FAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLL 317 (319)
T ss_pred HHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEe
Confidence 46788899999883 3 448899999999999998665 367765
No 101
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.58 E-value=1.4e-07 Score=68.06 Aligned_cols=34 Identities=44% Similarity=0.673 Sum_probs=30.6
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.|.++|+|++|+|.++|+++++|++||+|+++.
T Consensus 56 ~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 89 (328)
T cd08268 56 PLPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIP 89 (328)
T ss_pred CCCCCCCcceEEEEEeeCCCCCcCCCCCEEEecc
Confidence 4478999999999999999999999999998764
No 102
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=98.58 E-value=1.2e-07 Score=69.31 Aligned_cols=136 Identities=16% Similarity=0.095 Sum_probs=72.5
Q ss_pred CCCccccccc--cEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCC-Cceeee--e-----------
Q 040822 6 LIENCMGHEI--VGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFK--T----------- 69 (158)
Q Consensus 6 ~~p~~~G~e~--~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~-~~~~~~--~----------- 69 (158)
++|+++|+++ .|++..+|+++++|++||||+++. ++++|+.....-.+..+| ..++.. .
T Consensus 66 ~~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~g-----~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~ 140 (338)
T cd08295 66 LPPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGFT-----GWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAY 140 (338)
T ss_pred CCCcCCCCeEeccEEEEEEecCCCCCCCCCEEEecC-----CceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHH
Confidence 4588899754 567777899999999999997642 456666555311122232 211111 0
Q ss_pred hhhh------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHc-CCcceeEEEE------eC
Q 040822 70 VNLI------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLEN-RDVKYRFVID------IG 136 (158)
Q Consensus 70 ~~~~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~-~~~~~k~vl~------~~ 136 (158)
..+. .++..++... +-...+.++|+++..+++++....+.+ ..+.+++ .... .+++ +.
T Consensus 141 ~~l~~~~~~~~g~~VlI~Ga---~G~vG~~aiqlAk~~G~~Vi~~~~~~~----~~~~~~~~lGa~--~vi~~~~~~~~~ 211 (338)
T cd08295 141 AGFYEVCKPKKGETVFVSAA---SGAVGQLVGQLAKLKGCYVVGSAGSDE----KVDLLKNKLGFD--DAFNYKEEPDLD 211 (338)
T ss_pred HHHHHhcCCCCCCEEEEecC---ccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCc--eeEEcCCcccHH
Confidence 0110 1122222221 223457789999999987543332222 2333322 2221 2223 22
Q ss_pred cccc-cCCccCcCccccCCCC
Q 040822 137 QHLE-LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 137 ~~~~-~t~g~g~d~v~d~~~~ 156 (158)
+.+. .++ +|+|+|+|++|+
T Consensus 212 ~~i~~~~~-~gvd~v~d~~g~ 231 (338)
T cd08295 212 AALKRYFP-NGIDIYFDNVGG 231 (338)
T ss_pred HHHHHhCC-CCcEEEEECCCH
Confidence 3344 554 799999999875
No 103
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.57 E-value=1.2e-07 Score=68.74 Aligned_cols=35 Identities=37% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+++|.++|+|++|+|.++|+++..|++||||++..
T Consensus 58 ~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~ 92 (329)
T cd08250 58 VKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMS 92 (329)
T ss_pred CCCCcccCceeEEEEEEECCCCCCCCCCCEEEEec
Confidence 35688999999999999999999999999998754
No 104
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.56 E-value=9.2e-08 Score=67.60 Aligned_cols=33 Identities=39% Similarity=0.468 Sum_probs=29.9
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.|.++|+|++|+|+++|+.++.|++||||++..
T Consensus 23 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 55 (288)
T smart00829 23 GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA 55 (288)
T ss_pred CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc
Confidence 367899999999999999999999999998764
No 105
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=98.56 E-value=5.5e-08 Score=69.77 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=74.5
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC-CccccccccccccCCEEEEEcCCCceeee------e------hhh
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP-YVNSCQDCNFASIAGVYVIVEVPKEVKFK------T------VNL 72 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~-~~~~~~~~~~~~~~g~~v~~g~~~~~~~~------~------~~~ 72 (158)
.+|.++|+|++|+|..+|+++++|++||+|+++. .. .+.+++...... +...|..++.. . ..+
T Consensus 53 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~g---~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~a~~~l 128 (320)
T cd05286 53 PLPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGPPG---AYAEYRVVPASR-LVKLPDGISDETAAALLLQGLTAHYLL 128 (320)
T ss_pred CCCccCCcceeEEEEEECCCCCCCCCCCEEEEecCCC---ceeEEEEecHHH-ceeCCCCCCHHHHhhccchHHHHHHHH
Confidence 3467899999999999999999999999998764 22 233443333221 22233111110 0 000
Q ss_pred h------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-
Q 040822 73 I------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE- 140 (158)
Q Consensus 73 ~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~- 140 (158)
. .+...++... .-...+.++++++..+++++....+.+ ..+.+.+... +.++. +.+.+.
T Consensus 129 ~~~~~~~~g~~vlI~g~---~g~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~--~~~~~~~~~~~~~~~~~ 199 (320)
T cd05286 129 RETYPVKPGDTVLVHAA---AGGVGLLLTQWAKALGATVIGTVSSEE----KAELARAAGA--DHVINYRDEDFVERVRE 199 (320)
T ss_pred HHhcCCCCCCEEEEEcC---CchHHHHHHHHHHHcCCEEEEEcCCHH----HHHHHHHCCC--CEEEeCCchhHHHHHHH
Confidence 0 1111222111 123346778888888877543322222 2333333232 22222 223345
Q ss_pred cCCccCcCccccCCCC
Q 040822 141 LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 141 ~t~g~g~d~v~d~~~~ 156 (158)
.+.++++|.++|++++
T Consensus 200 ~~~~~~~d~vl~~~~~ 215 (320)
T cd05286 200 ITGGRGVDVVYDGVGK 215 (320)
T ss_pred HcCCCCeeEEEECCCc
Confidence 6778899999998775
No 106
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=98.56 E-value=2.9e-06 Score=61.35 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=27.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
+++|.++|+|++|+|+++ +++.|++||||++.
T Consensus 55 ~~~~~~~g~e~~G~v~~~--~~~~~~~Gd~V~~~ 86 (325)
T cd05280 55 RNYPHTPGIDAAGTVVSS--DDPRFREGDEVLVT 86 (325)
T ss_pred CCCCCccCcccEEEEEEe--CCCCCCCCCEEEEc
Confidence 346889999999999999 56789999999874
No 107
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=98.51 E-value=3.9e-06 Score=60.28 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=30.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
...|.++|+|++|+|.++|+++..|++||||++.
T Consensus 55 ~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~ 88 (323)
T cd05276 55 PGASDILGLEVAGVVVAVGPGVTGWKVGDRVCAL 88 (323)
T ss_pred CCCCCcccceeEEEEEeeCCCCCCCCCCCEEEEe
Confidence 3457899999999999999999999999999875
No 108
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=98.49 E-value=1.8e-07 Score=67.36 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=31.0
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.+|.++|+|++|+|.++|+++.+|++||+|++..
T Consensus 55 ~~~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~ 89 (325)
T TIGR02824 55 PGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALV 89 (325)
T ss_pred CCCCCCccceeEEEEEEeCCCCCCCCCCCEEEEcc
Confidence 34578999999999999999999999999998753
No 109
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=98.47 E-value=3.8e-07 Score=66.37 Aligned_cols=33 Identities=48% Similarity=0.662 Sum_probs=30.1
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
.+|.++|+|++|+|+++|+++++|++||+|++.
T Consensus 51 ~~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~ 83 (334)
T cd08234 51 APPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVD 83 (334)
T ss_pred CCCcccccceEEEEEEeCCCCCCCCCCCEEEEc
Confidence 367899999999999999999999999999874
No 110
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=98.46 E-value=3.6e-07 Score=66.51 Aligned_cols=47 Identities=26% Similarity=0.442 Sum_probs=35.3
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIA 53 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~ 53 (158)
.|.++|+|++|+|.++|+++..|++||+|++.... ...++++++...
T Consensus 59 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~ 106 (336)
T cd08252 59 QPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVD 106 (336)
T ss_pred CCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccceEEEEEc
Confidence 57799999999999999999999999999875321 123344555444
No 111
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.46 E-value=1.2e-06 Score=63.06 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=74.1
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCc-cccccccccccCCEEEEEcCCCceeeee------------hhh-
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV-NSCQDCNFASIAGVYVIVEVPKEVKFKT------------VNL- 72 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~- 72 (158)
.|..+|+|++|+|.++|+++.+|++||||++.... ....+.++....... +..+|..+.... ..+
T Consensus 58 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~-~~~ip~~~~~~~~~~~~~~~~~a~~~~~ 136 (319)
T cd08267 58 FPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESG-LAKKPEGVSFEEAAALPVAGLTALQALR 136 (319)
T ss_pred CCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCCceeeEEEEechhh-eEECCCCCCHHHHHhhhhHHHHHHHHHH
Confidence 46789999999999999999999999999876420 012334444443222 233442221110 000
Q ss_pred -----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCc-cc-c-cCCc
Q 040822 73 -----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQ-HL-E-LKPR 144 (158)
Q Consensus 73 -----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~-~~-~-~t~g 144 (158)
..+...++... +-...+.++++++..+++++....+ ++ .+.++.... ..+++... +. . .+.+
T Consensus 137 ~~~~~~~g~~vli~g~---~g~~g~~~~~la~~~g~~v~~~~~~-~~----~~~~~~~g~--~~~~~~~~~~~~~~~~~~ 206 (319)
T cd08267 137 DAGKVKPGQRVLINGA---SGGVGTFAVQIAKALGAHVTGVCST-RN----AELVRSLGA--DEVIDYTTEDFVALTAGG 206 (319)
T ss_pred HhcCCCCCCEEEEEcC---CcHHHHHHHHHHHHcCCEEEEEeCH-HH----HHHHHHcCC--CEeecCCCCCcchhccCC
Confidence 01111222111 1234467788899888875433222 22 232322222 12222211 11 3 6777
Q ss_pred cCcCccccCCCC
Q 040822 145 VGPWSCMDKIPS 156 (158)
Q Consensus 145 ~g~d~v~d~~~~ 156 (158)
+++|+++|+.++
T Consensus 207 ~~~d~vi~~~~~ 218 (319)
T cd08267 207 EKYDVIFDAVGN 218 (319)
T ss_pred CCCcEEEECCCc
Confidence 899999998773
No 112
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.45 E-value=4.3e-07 Score=65.57 Aligned_cols=138 Identities=16% Similarity=0.239 Sum_probs=73.5
Q ss_pred CccccccccEEEEEeCCCCCCCCCCCEEEecCCcc-ccccccccccCCEEEEEcCCCceeeee------------hhh--
Q 040822 8 ENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVN-SCQDCNFASIAGVYVIVEVPKEVKFKT------------VNL-- 72 (158)
Q Consensus 8 p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~-- 72 (158)
|.++|+|++|+|.++|+++++|++||+|++..... ..++.+++..... .++..|..+.... ..+
T Consensus 57 ~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~-~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~ 135 (325)
T cd08271 57 PHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDAR-AVLPLPDSLSFEEAAALPCAGLTAYQALFK 135 (325)
T ss_pred CcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCCccceeEEEeCHH-HeEECCCCCCHHHHHhhhhhHHHHHHHHHH
Confidence 67899999999999999999999999998764110 1233344443322 2223442111100 000
Q ss_pred ----hhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-cC
Q 040822 73 ----IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-LK 142 (158)
Q Consensus 73 ----~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~t 142 (158)
..++..++... +....+.++++++..+++++... .-++ .+.+..... +.+++ +.+.+. .+
T Consensus 136 ~~~~~~g~~vlI~g~---~~~ig~~~~~~a~~~g~~v~~~~-~~~~----~~~~~~~g~--~~~~~~~~~~~~~~~~~~~ 205 (325)
T cd08271 136 KLRIEAGRTILITGG---AGGVGSFAVQLAKRAGLRVITTC-SKRN----FEYVKSLGA--DHVIDYNDEDVCERIKEIT 205 (325)
T ss_pred hcCCCCCCEEEEECC---ccHHHHHHHHHHHHcCCEEEEEE-cHHH----HHHHHHcCC--cEEecCCCccHHHHHHHHc
Confidence 01111222111 12344667788888888754332 2222 222222222 22222 223345 57
Q ss_pred CccCcCccccCCCC
Q 040822 143 PRVGPWSCMDKIPS 156 (158)
Q Consensus 143 ~g~g~d~v~d~~~~ 156 (158)
.++|+|.++|++++
T Consensus 206 ~~~~~d~vi~~~~~ 219 (325)
T cd08271 206 GGRGVDAVLDTVGG 219 (325)
T ss_pred CCCCCcEEEECCCc
Confidence 77899999998775
No 113
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.41 E-value=4.3e-07 Score=65.40 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=27.6
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.|.++|+|++|+|+++|. ..+++||||++..
T Consensus 55 ~~~~~~g~e~~G~v~~vG~--~~~~~Gd~V~~~~ 86 (320)
T cd08243 55 KFPRVLGIEAVGEVEEAPG--GTFTPGQRVATAM 86 (320)
T ss_pred CCCccccceeEEEEEEecC--CCCCCCCEEEEec
Confidence 4478899999999999995 5799999998764
No 114
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=98.40 E-value=4.7e-07 Score=65.62 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.+|.++|+|++|+|+++| ++.|++||||++..
T Consensus 56 ~~~~~~g~e~~G~V~~~~--~~~~~~Gd~V~~~~ 87 (326)
T cd08289 56 RYPFIPGIDLAGTVVESN--DPRFKPGDEVIVTS 87 (326)
T ss_pred CCCcCcccceeEEEEEcC--CCCCCCCCEEEEcc
Confidence 458899999999999954 57899999998764
No 115
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=98.38 E-value=1.2e-05 Score=58.22 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 94 MVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 94 ~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+.++...+.+.++.+.+++++++++++.+..+...+|.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~k~vv~ 322 (323)
T TIGR02823 282 LATDLKPRNLESITREITLEELPEALEQILAGQHRGRTVVD 322 (323)
T ss_pred HHHHhhcCCCcCceeeecHHHHHHHHHHHhCCCccceEEEe
Confidence 33445566665556789999999999999887777777653
No 116
>PLN02702 L-idonate 5-dehydrogenase
Probab=98.32 E-value=9.9e-07 Score=65.13 Aligned_cols=44 Identities=45% Similarity=0.772 Sum_probs=35.5
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~ 50 (158)
++|.++|+|++|+|+++|+++++|++||+|++.+.. .|+.|..|
T Consensus 72 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~c~~c 115 (364)
T PLN02702 72 KEPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGI-SCWRCNLC 115 (364)
T ss_pred CCCcccccceeEEEEEECCCCCCCCCCCEEEEcCCC-CCCCCcch
Confidence 357899999999999999999999999999876544 45555444
No 117
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=98.31 E-value=9.3e-07 Score=63.54 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=29.8
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
.|.++|+|++|+|..+|+++..|++||+|++..
T Consensus 57 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~ 89 (323)
T cd08241 57 LPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT 89 (323)
T ss_pred CCCcccceeEEEEEEeCCCCCCCCCCCEEEEec
Confidence 366899999999999999999999999998764
No 118
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=98.27 E-value=1.3e-06 Score=63.81 Aligned_cols=41 Identities=37% Similarity=0.678 Sum_probs=33.3
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDC 47 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~ 47 (158)
.+|.++|+|++|+|+++|++|+.|++||||++.+.. .|+.|
T Consensus 52 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~-~~~~~ 92 (339)
T cd08232 52 REPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSR-PCGTC 92 (339)
T ss_pred cCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCC-cCCCC
Confidence 457899999999999999999999999999875432 34444
No 119
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=98.22 E-value=2.3e-06 Score=62.11 Aligned_cols=30 Identities=37% Similarity=0.266 Sum_probs=25.9
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
.+.++|+|++|+|+++|+. +|++||||++.
T Consensus 64 ~~~~~g~e~~G~V~~~G~~--~~~~Gd~V~~~ 93 (329)
T cd05288 64 LGEPMRGGGVGEVVESRSP--DFKVGDLVSGF 93 (329)
T ss_pred CCCcccCceEEEEEecCCC--CCCCCCEEecc
Confidence 4668899999999999964 79999999764
No 120
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=98.20 E-value=3.8e-06 Score=61.62 Aligned_cols=143 Identities=15% Similarity=0.214 Sum_probs=76.8
Q ss_pred CCCccccccccEE---EEEeC-CCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeee------------
Q 040822 6 LIENCMGHEIVGA---VKEVG-SNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKT------------ 69 (158)
Q Consensus 6 ~~p~~~G~e~~G~---V~~vG-~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------ 69 (158)
++|.+++.+++|+ +..+| ..+..+..||++..... ..++++|...+ ....+..|..+++..
T Consensus 64 ~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~--~g~~aey~v~p-~~~~~~~P~~l~~~~aa~~p~~~~tA~ 140 (347)
T KOG1198|consen 64 EFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLS--SGGLAEYVVVP-EKLLVKIPESLSFEEAAALPLAALTAL 140 (347)
T ss_pred CCCCccccccCCceeEEeccccccccceEeeeEEeeccC--CCceeeEEEcc-hhhccCCCCccChhhhhcCchHHHHHH
Confidence 5776666666555 44445 34456778887754443 34677777665 333444552222211
Q ss_pred hhhhhcc------------ceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHH-cCCcceeEEEEeC
Q 040822 70 VNLIMEM------------RTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLE-NRDVKYRFVIDIG 136 (158)
Q Consensus 70 ~~~~~~~------------~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~-~~~~~~k~vl~~~ 136 (158)
..+.... ..+. ..+ +-...+.++|+++..++...++..+.+..+- .+.+. +...+++.. ++.
T Consensus 141 ~al~~~~~~~~~~~~~~g~~vLv--~gg-sggVG~~aiQlAk~~~~~~v~t~~s~e~~~l-~k~lGAd~vvdy~~~-~~~ 215 (347)
T KOG1198|consen 141 SALFQLAPGKRSKKLSKGKSVLV--LGG-SGGVGTAAIQLAKHAGAIKVVTACSKEKLEL-VKKLGADEVVDYKDE-NVV 215 (347)
T ss_pred HHHHhccccccccccCCCCeEEE--EeC-CcHHHHHHHHHHHhcCCcEEEEEcccchHHH-HHHcCCcEeecCCCH-HHH
Confidence 1111111 2222 223 4456789999999998544444455444332 22221 122334431 344
Q ss_pred cccc-cCCccCcCccccCCCCC
Q 040822 137 QHLE-LKPRVGPWSCMDKIPSR 157 (158)
Q Consensus 137 ~~~~-~t~g~g~d~v~d~~~~~ 157 (158)
+.+. .| +.|+|+|+|++++.
T Consensus 216 e~~kk~~-~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 216 ELIKKYT-GKGVDVVLDCVGGS 236 (347)
T ss_pred HHHHhhc-CCCccEEEECCCCC
Confidence 4455 56 89999999999973
No 121
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=98.19 E-value=7.9e-05 Score=53.96 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 92 KEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 92 ~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
..+.++..++.++++++.+++++++++++.+..+...+|.+++
T Consensus 281 ~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~vvv~ 323 (324)
T cd08288 281 ARLARDLDPALLEALTREIPLADVPDAAEAILAGQVRGRVVVD 323 (324)
T ss_pred HHHHHHHhcCCccccceeecHHHHHHHHHHHhcCCccCeEEEe
Confidence 3455566677777667889999999999999888777777754
No 122
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=97.95 E-value=3.6e-05 Score=48.22 Aligned_cols=44 Identities=30% Similarity=0.500 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEE
Q 040822 90 ETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 90 ~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
.++++.+++.+|.+++.+ ++||++++.+|++.++.++..||+||
T Consensus 83 ~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 83 ALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred HHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence 378999999999999866 69999999999999999999999975
No 123
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=97.72 E-value=0.00093 Score=47.78 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=62.3
Q ss_pred cccCCEEEEEcCC----Cc-e--e-eeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccH
Q 040822 50 ASIAGVYVIVEVP----KE-V--K-FKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYV 115 (158)
Q Consensus 50 ~~~~g~~v~~g~~----~~-~--~-~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~ 115 (158)
+...+|+.++|.- .+ . . -....++.+..++.|....... ...+++..|.++|+++..- .+-.+|.+
T Consensus 239 ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEna 318 (340)
T COG2130 239 LNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENA 318 (340)
T ss_pred hccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhcc
Confidence 3446788888754 11 1 1 1335566778899999873122 3356888999999998644 35678999
Q ss_pred HHHHHHHHcCCcceeEEEEeC
Q 040822 116 NGALERLENRDVKYRFVIDIG 136 (158)
Q Consensus 116 ~~a~~~~~~~~~~~k~vl~~~ 136 (158)
+++|..+.+++..||.++.+.
T Consensus 319 P~Af~gLl~G~N~GK~vvKv~ 339 (340)
T COG2130 319 PEAFIGLLSGKNFGKLVVKVA 339 (340)
T ss_pred HHHHHHHhcCCccceEEEEec
Confidence 999999999999999987664
No 124
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.70 E-value=5.4e-05 Score=54.95 Aligned_cols=34 Identities=41% Similarity=0.583 Sum_probs=31.0
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
++|.++|+|++|+|+++|+++.+|++||+|++..
T Consensus 56 ~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~ 89 (331)
T cd08273 56 PLPFTPGYDLVGRVDALGSGVTGFEVGDRVAALT 89 (331)
T ss_pred CCCcccccceEEEEEEeCCCCccCCCCCEEEEeC
Confidence 4688999999999999999999999999998764
No 125
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.47 E-value=2.9e-05 Score=64.09 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=59.9
Q ss_pred ccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEeccc---HHHHHHHHHcCC-cceeEEEEeCcccc-cCCccCcCc
Q 040822 75 EMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQY---VNGALERLENRD-VKYRFVIDIGQHLE-LKPRVGPWS 149 (158)
Q Consensus 75 ~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~---~~~a~~~~~~~~-~~~k~vl~~~~~~~-~t~g~g~d~ 149 (158)
++..+++...| + ..|+++..+...++.++.++-+.|+ +.+.|.+++..+ .++|.. +|+..++ .|+|+|||+
T Consensus 1553 GekiLIHaGsG-G--VGQAAIaiALa~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdt-sFEq~vl~~T~GrGVdl 1628 (2376)
T KOG1202|consen 1553 GEKILIHAGSG-G--VGQAAIAIALAHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDT-SFEQHVLWHTKGRGVDL 1628 (2376)
T ss_pred CcEEEEecCCC-c--hhHHHHHHHHHcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccc-cHHHHHHHHhcCCCeee
Confidence 45667766655 4 4578888888999999888887776 556677777655 456665 7888888 999999999
Q ss_pred cccCCCC
Q 040822 150 CMDKIPS 156 (158)
Q Consensus 150 v~d~~~~ 156 (158)
|+|++..
T Consensus 1629 VLNSLae 1635 (2376)
T KOG1202|consen 1629 VLNSLAE 1635 (2376)
T ss_pred ehhhhhH
Confidence 9998864
No 126
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=97.40 E-value=0.00028 Score=50.43 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=30.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
..|.++|+|++|+|+++|+++..|++||+|++..
T Consensus 58 ~~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~ 91 (309)
T cd05289 58 TLPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMT 91 (309)
T ss_pred CCCCccccceeEEEEeeCCCCCCCCCCCEEEEcc
Confidence 4488999999999999999999999999998765
No 127
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=97.39 E-value=0.00024 Score=51.48 Aligned_cols=34 Identities=41% Similarity=0.433 Sum_probs=30.7
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
..|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus 55 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~ 88 (337)
T cd08275 55 KPPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLT 88 (337)
T ss_pred CCCCCCcceeEEEEEEECCCCcCCCCCCEEEEec
Confidence 4477899999999999999999999999998764
No 128
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=97.33 E-value=0.0012 Score=49.56 Aligned_cols=86 Identities=8% Similarity=0.075 Sum_probs=57.6
Q ss_pred cccccCCEEEEEcCC-C-ce------------eeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ce-EE
Q 040822 48 NFASIAGVYVIVEVP-K-EV------------KFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EI-EI 109 (158)
Q Consensus 48 ~~~~~~g~~v~~g~~-~-~~------------~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i-~v 109 (158)
..++++|+++++|.+ . .. ++....+..++.++.++... ......++++++.++++++ ++ ++
T Consensus 287 ~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~g~i~~~~~i~~~~ 365 (393)
T TIGR02819 287 EVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTP-VMKYNRNLMQAILHDRVQIAKAVNVTV 365 (393)
T ss_pred HHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEeccCC-hhhhHHHHHHHHHcCCCCHHHceecce
Confidence 457889999999975 1 11 11223333445566664322 2222367899999999874 34 57
Q ss_pred EecccHHHHHHHHHcCCcceeEEEEe
Q 040822 110 IPIQYVNGALERLENRDVKYRFVIDI 135 (158)
Q Consensus 110 ~~~~~~~~a~~~~~~~~~~~k~vl~~ 135 (158)
|++++++++|+.+.++. ..|.++.+
T Consensus 366 ~~l~~~~~a~~~~~~~~-~~Kvvi~~ 390 (393)
T TIGR02819 366 ISLDDAPEGYAEFDAGA-AKKFVIDP 390 (393)
T ss_pred ecHHHHHHHHHHHhhCC-ceEEEEeC
Confidence 99999999999998764 37887754
No 129
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=97.23 E-value=0.0019 Score=47.29 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred ccccCCEEEEEcCC-C-ce-----eeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccH
Q 040822 49 FASIAGVYVIVEVP-K-EV-----KFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYV 115 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~-~~-----~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~ 115 (158)
.++.+|+++.+|.. . .. ..+...+..++.++.++... .. ..++++++++.++.+++.+ ..++++++
T Consensus 240 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~ 318 (338)
T cd08295 240 NMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVG-DYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESA 318 (338)
T ss_pred HhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEeh-hhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHH
Confidence 46778999988865 2 11 12334556677788876554 32 2256778899999988643 56999999
Q ss_pred HHHHHHHHcCCcceeEEEE
Q 040822 116 NGALERLENRDVKYRFVID 134 (158)
Q Consensus 116 ~~a~~~~~~~~~~~k~vl~ 134 (158)
+++++.++.+...+|.+++
T Consensus 319 ~~A~~~~~~~~~~GkvVl~ 337 (338)
T cd08295 319 PEAFVGLFTGSNIGKQVVK 337 (338)
T ss_pred HHHHHHHhcCCCCceEEEE
Confidence 9999999988888888865
No 130
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=97.11 E-value=0.0036 Score=46.96 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=66.7
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcC
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENR 125 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~ 125 (158)
.++.+|+++.++.+ ....++...+...+..+.++..+ ...+.++++++++++.+++. .+++++++++++++.+.++
T Consensus 299 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~ 377 (398)
T TIGR01751 299 VCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFA-NLREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRN 377 (398)
T ss_pred hhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccC-cHHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcC
Confidence 35678899998866 22444455556677788888777 77778889999999988864 4789999999999999988
Q ss_pred CcceeEEEEe
Q 040822 126 DVKYRFVIDI 135 (158)
Q Consensus 126 ~~~~k~vl~~ 135 (158)
...+|.++.+
T Consensus 378 ~~~gkvvv~~ 387 (398)
T TIGR01751 378 HHQGNVAVLV 387 (398)
T ss_pred CCCceEEEEe
Confidence 8888888654
No 131
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=97.09 E-value=0.0037 Score=46.80 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=65.1
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcC
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENR 125 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~ 125 (158)
.++.+|+++.++.. ....++...+..++..+.++..+ ....+++++++++++.+.+. .+++++++++++++.+.++
T Consensus 304 ~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~ 382 (393)
T cd08246 304 VCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFA-NDREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRN 382 (393)
T ss_pred HhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccC-cHHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhC
Confidence 45678899988755 23445555666778888888777 77788899999999988764 4789999999999999877
Q ss_pred -CcceeEEE
Q 040822 126 -DVKYRFVI 133 (158)
Q Consensus 126 -~~~~k~vl 133 (158)
...+|.++
T Consensus 383 ~~~~gkvvv 391 (393)
T cd08246 383 QHHVGNMAV 391 (393)
T ss_pred ccccceEEE
Confidence 66777764
No 132
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=97.05 E-value=0.0042 Score=45.86 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=62.2
Q ss_pred ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC--Ccc--c-ceEEEecccHHHHHH
Q 040822 49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN--GIY--P-EIEIIPIQYVNGALE 120 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~--~i~--~-~i~v~~~~~~~~a~~ 120 (158)
.++.+|+++.++.. . ...++...+..++..+.+...+ +...++++++++.++ .+. . +.+++++++++++++
T Consensus 269 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~ 347 (361)
T cd08231 269 LLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNY-DPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALE 347 (361)
T ss_pred HhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccC-CchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHH
Confidence 45678999988855 2 2344444567788888888877 777788899999887 433 2 457899999999999
Q ss_pred HHHcCCcceeEEEE
Q 040822 121 RLENRDVKYRFVID 134 (158)
Q Consensus 121 ~~~~~~~~~k~vl~ 134 (158)
.++++.. +|.++.
T Consensus 348 ~~~~~~~-~k~vi~ 360 (361)
T cd08231 348 LAESGTA-LKVVID 360 (361)
T ss_pred HHHcCCc-eEEEeC
Confidence 9887763 677753
No 133
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=97.01 E-value=0.0061 Score=44.69 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=61.7
Q ss_pred ccccCCEEEEEcCCC---ceeeeehhhhhccceeEEeeecCCH------HHHHHHHHHHHhCCcccce-EEEecccHHHH
Q 040822 49 FASIAGVYVIVEVPK---EVKFKTVNLIMEMRTIAGSIVGGGT------QETKEMVEFCAENGIYPEI-EIIPIQYVNGA 118 (158)
Q Consensus 49 ~~~~~g~~v~~g~~~---~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a 118 (158)
.++++|+++.++.+. ...++...+......+.+.... .. ..+.++.++++.+.+++.+ .+||+++..++
T Consensus 230 ~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a 308 (326)
T COG0604 230 ALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG-SRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAA 308 (326)
T ss_pred HhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecce-ecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHH
Confidence 467789999998763 3345556666677788887766 44 3456788999999999877 59999995544
Q ss_pred HHHHHc-CCcceeEEEE
Q 040822 119 LERLEN-RDVKYRFVID 134 (158)
Q Consensus 119 ~~~~~~-~~~~~k~vl~ 134 (158)
...... +...||.++.
T Consensus 309 ~a~~~~~~~~~GKvvl~ 325 (326)
T COG0604 309 AAHLLLERRTTGKVVLK 325 (326)
T ss_pred HHHHHcccCCcceEEEe
Confidence 443333 4788999875
No 134
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.81 E-value=0.012 Score=43.77 Aligned_cols=83 Identities=25% Similarity=0.381 Sum_probs=56.1
Q ss_pred cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822 50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE 120 (158)
Q Consensus 50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~ 120 (158)
++.+ |+++.++.+ . .+.+....+.. ...+.++..+. ...++.+++++++++.+++ +.+.|++++++++++
T Consensus 276 ~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~ 354 (368)
T TIGR02818 276 CHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFD 354 (368)
T ss_pred hhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHH
Confidence 4454 899999876 2 23333333333 34566665430 2456788999999998863 458899999999999
Q ss_pred HHHcCCcceeEEEE
Q 040822 121 RLENRDVKYRFVID 134 (158)
Q Consensus 121 ~~~~~~~~~k~vl~ 134 (158)
.++++.. .|.++.
T Consensus 355 ~~~~~~~-~k~~v~ 367 (368)
T TIGR02818 355 LMHEGKS-IRTVIH 367 (368)
T ss_pred HHhCCCc-eeEEee
Confidence 9977653 476654
No 135
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=96.56 E-value=0.017 Score=42.07 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=59.3
Q ss_pred ccccCCEEEEEcCC-C-----cee--eeehhhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecc
Q 040822 49 FASIAGVYVIVEVP-K-----EVK--FKTVNLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQ 113 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~-----~~~--~~~~~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~ 113 (158)
.++++|+++.++.. . ... .....+..+...+.+.... . ...+++++++++++.+++.+ ..++++
T Consensus 226 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~ 304 (325)
T TIGR02825 226 QMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVN-RWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFE 304 (325)
T ss_pred HhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEeh-hhhhhhhHHHHHHHHHHHHCCCcccceeccccHH
Confidence 46788999998854 1 111 1223455567777776532 2 23467888999999998643 678999
Q ss_pred cHHHHHHHHHcCCcceeEEE
Q 040822 114 YVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 114 ~~~~a~~~~~~~~~~~k~vl 133 (158)
+++++++.++++...+|.++
T Consensus 305 ~~~~A~~~~~~~~~~gkvVv 324 (325)
T TIGR02825 305 NMPAAFMGMLKGENLGKTIV 324 (325)
T ss_pred HHHHHHHHHhcCCCCCeEEe
Confidence 99999999998887788764
No 136
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=96.48 E-value=0.021 Score=41.85 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=63.5
Q ss_pred ccccCCEEEEEcCC-Cc---eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KE---VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER 121 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~---~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~ 121 (158)
.++.+|+++.++.+ .. ..++...++.+..++.+.... ....+++++++++++.+.+ +.+.+++++++++++.
T Consensus 253 ~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~ 331 (345)
T cd08260 253 SLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM-PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAA 331 (345)
T ss_pred HhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC-CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHH
Confidence 45678899888866 21 334444455677888887666 6777888999999998864 4578999999999999
Q ss_pred HHcCCcceeEEE
Q 040822 122 LENRDVKYRFVI 133 (158)
Q Consensus 122 ~~~~~~~~k~vl 133 (158)
++.....++.++
T Consensus 332 ~~~~~~~~~~v~ 343 (345)
T cd08260 332 MDDYATAGITVI 343 (345)
T ss_pred HHcCCCCceEEe
Confidence 988877777764
No 137
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=96.47 E-value=0.02 Score=41.16 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcC-----CcceeEEEEeCcccccCCccCcCccccCCCCC
Q 040822 90 ETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENR-----DVKYRFVIDIGQHLELKPRVGPWSCMDKIPSR 157 (158)
Q Consensus 90 ~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~-----~~~~k~vl~~~~~~~~t~g~g~d~v~d~~~~~ 157 (158)
..+-+.|+++..+..++...- .++..+.+++. ..++|.-.++.+.+..+...|+|+-||.+||.
T Consensus 166 vGql~GQ~Ak~~Gc~VVGsaG----S~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~ 234 (343)
T KOG1196|consen 166 VGQLVGQFAKLMGCYVVGSAG----SKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGK 234 (343)
T ss_pred hHHHHHHHHHhcCCEEEEecC----ChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcH
Confidence 346788999988885433333 33334444332 23444433344445567889999999999985
No 138
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=96.44 E-value=0.032 Score=40.72 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=59.2
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~ 125 (158)
++..|+++.++.. ....++...+......+.+.... ....++.++++++++.+++ .+.+++++++.++++.+.++
T Consensus 248 l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~ 326 (337)
T cd08261 248 VAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNA-TREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAP 326 (337)
T ss_pred HhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccC-ChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcC
Confidence 4567888877654 33333334445556666666545 5667788999999999876 45789999999999999877
Q ss_pred C-cceeEEEE
Q 040822 126 D-VKYRFVID 134 (158)
Q Consensus 126 ~-~~~k~vl~ 134 (158)
. ..+|.+++
T Consensus 327 ~~~~~k~v~~ 336 (337)
T cd08261 327 PGGVIKVLIE 336 (337)
T ss_pred CCceEEEEEe
Confidence 3 55777764
No 139
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.43 E-value=0.023 Score=42.50 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=62.1
Q ss_pred ccccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE 123 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~ 123 (158)
.++++|+++.++.. . ...++....+.+..++.+.... ....++++++++.++.+.+ ..+.+++++++++++.+.
T Consensus 295 ~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~ 373 (386)
T cd08283 295 AVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTH-VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFD 373 (386)
T ss_pred HhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCC-chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHH
Confidence 46778999999866 2 2334444456677788887656 5667888999999998875 347899999999999988
Q ss_pred cCCc-ceeEEE
Q 040822 124 NRDV-KYRFVI 133 (158)
Q Consensus 124 ~~~~-~~k~vl 133 (158)
++.. .+|.++
T Consensus 374 ~~~~~~~k~~~ 384 (386)
T cd08283 374 KKEDGCIKVVL 384 (386)
T ss_pred hCCCCeEEEEe
Confidence 7663 467765
No 140
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=96.38 E-value=0.029 Score=41.65 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=54.5
Q ss_pred cccC-CEEEEEcCC-C--ceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822 50 ASIA-GVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE 120 (158)
Q Consensus 50 ~~~~-g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~ 120 (158)
++.+ |+++.++.+ . .+......+. ....+.++..+. ...++++++++++++.+++ +.++|+++++++|++
T Consensus 277 l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~ 355 (368)
T cd08300 277 CHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFD 355 (368)
T ss_pred hccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHH
Confidence 4455 899998865 2 2333333333 234566655430 3456788999999999874 347899999999999
Q ss_pred HHHcCCcceeEEE
Q 040822 121 RLENRDVKYRFVI 133 (158)
Q Consensus 121 ~~~~~~~~~k~vl 133 (158)
.++++.. .|.++
T Consensus 356 ~~~~~~~-~k~~~ 367 (368)
T cd08300 356 LMHAGKS-IRTVV 367 (368)
T ss_pred HHhCCCC-ceeee
Confidence 9987653 36553
No 141
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=96.30 E-value=0.033 Score=40.75 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=59.7
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE 123 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~ 123 (158)
.++.+|+++.++.. ..........+.++.++...... ....+.+++++++++.+.+ ..+++++++++++++.+.
T Consensus 255 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~ 333 (344)
T cd08284 255 LVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCP-VRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFD 333 (344)
T ss_pred hcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCC-cchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHh
Confidence 45678899888765 23333334445566776655445 5667888999999998874 457899999999999888
Q ss_pred cCCcceeEEE
Q 040822 124 NRDVKYRFVI 133 (158)
Q Consensus 124 ~~~~~~k~vl 133 (158)
+... +|.++
T Consensus 334 ~~~~-~k~Vi 342 (344)
T cd08284 334 KRKV-LKVVL 342 (344)
T ss_pred cCCc-eEEEe
Confidence 7666 77765
No 142
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=96.29 E-value=0.023 Score=41.24 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=59.1
Q ss_pred ccccCCEEEEEcCC-C-c------eeeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccc-eEEEeccc
Q 040822 49 FASIAGVYVIVEVP-K-E------VKFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPE-IEIIPIQY 114 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~-~------~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~-i~v~~~~~ 114 (158)
.++.+|+++.++.. . . .......+..++..+.+.... .. ..+++++++++++.+++. ..++++++
T Consensus 230 ~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~ 308 (329)
T cd08294 230 HMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVY-RWQDRWPEALKQLLKWIKEGKLKYREHVTEGFEN 308 (329)
T ss_pred hhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhh-hhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHH
Confidence 35678898888743 1 1 112233456677788876644 32 224577888899988763 35689999
Q ss_pred HHHHHHHHHcCCcceeEEEE
Q 040822 115 VNGALERLENRDVKYRFVID 134 (158)
Q Consensus 115 ~~~a~~~~~~~~~~~k~vl~ 134 (158)
++++++.++++...+|.+++
T Consensus 309 ~~~A~~~~~~~~~~gkvvv~ 328 (329)
T cd08294 309 MPQAFIGMLKGENTGKAIVK 328 (329)
T ss_pred HHHHHHHHHcCCCCCeEEEe
Confidence 99999999988888888764
No 143
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.27 E-value=0.011 Score=36.86 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=45.7
Q ss_pred cccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHh
Q 040822 48 NFASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAE 100 (158)
Q Consensus 48 ~~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~ 100 (158)
..++++|++++++.+ ...+++...++.+++++.++..+ +..+++++++++.+
T Consensus 77 ~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~la~ 130 (130)
T PF00107_consen 77 KLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGG-SPEDFQEALQLLAQ 130 (130)
T ss_dssp HHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSG-GHHHHHHHHHHHH-
T ss_pred HHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccC-CHHHHHHHHHHhcC
Confidence 357889999999988 57888999999999999999999 88999999998763
No 144
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=96.26 E-value=0.033 Score=41.47 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=59.0
Q ss_pred ccccCCEEEEEcCC--Cc------------eeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEe
Q 040822 49 FASIAGVYVIVEVP--KE------------VKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIP 111 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~------------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~ 111 (158)
.++..|+++..+.. .. ..++...+..++..+.+.... ....+++++++++++.+++ +.++++
T Consensus 274 ~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 352 (375)
T cd08282 274 VTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAP-VKKYNRQLRDLILAGRAKPSFVVSHVIS 352 (375)
T ss_pred HhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecCC-chhhHHHHHHHHHcCCCChHHcEEEEee
Confidence 45678888777653 11 223334444556666666555 5566788899999999985 558999
Q ss_pred cccHHHHHHHHHcCCcceeEEE
Q 040822 112 IQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 112 ~~~~~~a~~~~~~~~~~~k~vl 133 (158)
+++++++++.+.++. .+|.++
T Consensus 353 l~~~~~a~~~~~~~~-~~kvvv 373 (375)
T cd08282 353 LEDAPEAYARFDKRL-ETKVVI 373 (375)
T ss_pred HHHHHHHHHHHhcCC-ceEEEe
Confidence 999999999998877 677765
No 145
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=96.24 E-value=0.0085 Score=42.13 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=59.6
Q ss_pred cccCCEEEEEcCC----Cceeee---ehhhhhccceeEEeeecCCHHHH----HHHHHHHHhCCcccce-EEEecccHHH
Q 040822 50 ASIAGVYVIVEVP----KEVKFK---TVNLIMEMRTIAGSIVGGGTQET----KEMVEFCAENGIYPEI-EIIPIQYVNG 117 (158)
Q Consensus 50 ~~~~g~~v~~g~~----~~~~~~---~~~~~~~~~~i~g~~~~~~~~~~----~~~~~l~~~~~i~~~i-~v~~~~~~~~ 117 (158)
+++.|.++.+|.. ++++++ ...+..-+..+.|...+ ..++ .+++.+..++.+++.| ++||+++..+
T Consensus 235 Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g--~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vad 312 (336)
T KOG1197|consen 235 LKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDG--EVELVSYVARLFALVNSGHLKIHIDHVYPLSKVAD 312 (336)
T ss_pred hccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCC--HHHHHHHHHHHHHHhhcCccceeeeeecchHHHHH
Confidence 6778899988854 333321 12222333344444433 3332 4667788889999866 8999999999
Q ss_pred HHHHHHcCCcceeEEEEeCcc
Q 040822 118 ALERLENRDVKYRFVIDIGQH 138 (158)
Q Consensus 118 a~~~~~~~~~~~k~vl~~~~~ 138 (158)
|++.++++...||.+|.+.++
T Consensus 313 A~~diesrktvGkvlLlp~~~ 333 (336)
T KOG1197|consen 313 AHADIESRKTVGKVLLLPGPE 333 (336)
T ss_pred HHHHHHhhhccceEEEeCCcc
Confidence 999999999999998876544
No 146
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=96.23 E-value=0.035 Score=40.66 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=60.4
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcC
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~ 125 (158)
++.+|+++.++.+ ....++....+.++..+.+.... ....+++++++..++.+++ ..+.+++++++++++.+.+.
T Consensus 258 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~ 336 (345)
T cd08287 258 ARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAP-VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDER 336 (345)
T ss_pred hccCCEEEEecccCCCCccCHHHHHhcceEEEEecCC-cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCC
Confidence 4567888888766 33444443556678888877666 5677888999999999875 45789999999999988766
Q ss_pred CcceeEEE
Q 040822 126 DVKYRFVI 133 (158)
Q Consensus 126 ~~~~k~vl 133 (158)
... |.++
T Consensus 337 ~~~-k~~~ 343 (345)
T cd08287 337 RAI-KVLL 343 (345)
T ss_pred Cce-EEEe
Confidence 543 6664
No 147
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=96.14 E-value=0.036 Score=41.11 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=59.9
Q ss_pred ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCC-HHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGG-TQETKEMVEFCAENGIYP---EIEIIPIQYVNGALER 121 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~ 121 (158)
.++.+|+++.++.. . ...++...++.+...+.++... . ...++++++++.++.+.+ ..+.++++++.++++.
T Consensus 276 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~ 354 (367)
T cd08263 276 VVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGA-RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYEN 354 (367)
T ss_pred HHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCC-CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHH
Confidence 35577888888755 2 2334444444567777775433 3 356788889999998875 3467999999999999
Q ss_pred HHcCCcceeEEE
Q 040822 122 LENRDVKYRFVI 133 (158)
Q Consensus 122 ~~~~~~~~k~vl 133 (158)
++.....+|+++
T Consensus 355 ~~~~~~~g~~~~ 366 (367)
T cd08263 355 LRKGLIHGRAIV 366 (367)
T ss_pred HhcCCccceeee
Confidence 988887788874
No 148
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=96.10 E-value=0.049 Score=39.88 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=58.7
Q ss_pred ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC-Cccc-ceEEEecccHHHHHHHHHcC
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN-GIYP-EIEIIPIQYVNGALERLENR 125 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~-~i~~-~i~v~~~~~~~~a~~~~~~~ 125 (158)
.++++|+++.++.+ .....+...+..+...+.+............+++++.++ .+.+ ..+++++++++++++.+..+
T Consensus 252 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~ 331 (341)
T PRK05396 252 NMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSG 331 (341)
T ss_pred HHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcC
Confidence 45678899998866 334444456666777777765330123345677888877 3443 44789999999999998876
Q ss_pred CcceeEEEEe
Q 040822 126 DVKYRFVIDI 135 (158)
Q Consensus 126 ~~~~k~vl~~ 135 (158)
. .+|.+++|
T Consensus 332 ~-~gk~vv~~ 340 (341)
T PRK05396 332 Q-SGKVILDW 340 (341)
T ss_pred C-CceEEEec
Confidence 6 68888765
No 149
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=96.06 E-value=0.061 Score=39.42 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=59.2
Q ss_pred ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~ 124 (158)
.++.+|+++.++.. ....++...++.++.++.+.... ...+.++.++++++.+++ ..+++++++++++++.+..
T Consensus 255 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~ 332 (345)
T cd08286 255 LVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVD--TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSA 332 (345)
T ss_pred hccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCc--hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhc
Confidence 46678899988865 44445555556677788765433 345677888998888864 4578999999999999876
Q ss_pred CC--cceeEEEE
Q 040822 125 RD--VKYRFVID 134 (158)
Q Consensus 125 ~~--~~~k~vl~ 134 (158)
.. -..|.++.
T Consensus 333 ~~~~~~~k~~~~ 344 (345)
T cd08286 333 AAKHKALKVIID 344 (345)
T ss_pred cCCCCeeEEEEe
Confidence 53 23477654
No 150
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=96.05 E-value=0.04 Score=40.52 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=57.0
Q ss_pred ccccCCEEEEEcCC-Cceeeeehhh-hhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNL-IMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE 123 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~ 123 (158)
.++.+|+++.++.. .....+...+ ..+..++.++... ...+++++++++++.+++ ..+.+++++++++++.++
T Consensus 263 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~ 340 (350)
T cd08256 263 MIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLG--PYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMA 340 (350)
T ss_pred HhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccC--chhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHH
Confidence 45678888888754 3333333322 2455667766544 345678899999998886 458899999999999998
Q ss_pred cCCcceeEE
Q 040822 124 NRDVKYRFV 132 (158)
Q Consensus 124 ~~~~~~k~v 132 (158)
++...+|.+
T Consensus 341 ~~~~~~kvv 349 (350)
T cd08256 341 RGDDSIKVV 349 (350)
T ss_pred hCCCceEEe
Confidence 776666664
No 151
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=96.05 E-value=0.039 Score=39.90 Aligned_cols=84 Identities=11% Similarity=0.119 Sum_probs=59.0
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC----------HHHHHHHHHHHHhCCccc-ceEEEecccH
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG----------TQETKEMVEFCAENGIYP-EIEIIPIQYV 115 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~~~~l~~~~~i~~-~i~v~~~~~~ 115 (158)
.++.+|+++.++.+ ....+.......++.++.+.... . ...++++++++.++.+++ ..+.++++++
T Consensus 227 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~ 305 (324)
T cd08292 227 LLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGG-RWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDA 305 (324)
T ss_pred hhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcH-HhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHH
Confidence 35678899888765 23344444455677888777653 2 124567888999998884 4578999999
Q ss_pred HHHHHHHHcCCcceeEEE
Q 040822 116 NGALERLENRDVKYRFVI 133 (158)
Q Consensus 116 ~~a~~~~~~~~~~~k~vl 133 (158)
.++++.+......+|.++
T Consensus 306 ~~a~~~~~~~~~~~kvvv 323 (324)
T cd08292 306 AKAAAASMRPGRAGKVLL 323 (324)
T ss_pred HHHHHHHHcCCCCceEEe
Confidence 999999887666666653
No 152
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.02 E-value=0.016 Score=41.36 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=51.3
Q ss_pred cccccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC--Ccc--c-ceEEEeccc
Q 040822 48 NFASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN--GIY--P-EIEIIPIQY 114 (158)
Q Consensus 48 ~~~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~--~i~--~-~i~v~~~~~ 114 (158)
..++++|+++.++.. .+.+++...++.+++++.++..+ +..+++++++++.++ .++ . +.+.|++++
T Consensus 206 ~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~ 279 (280)
T TIGR03366 206 ESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNY-EPRHLDQAVRFLAANGQRFPFEELVGKPFPLAD 279 (280)
T ss_pred HHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCC-CHHHHHHHHHHHHhhCCCCCHHHHhhccccccc
Confidence 346788999999964 34567777888899999999888 788899999999874 443 2 346788876
No 153
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=96.02 E-value=0.057 Score=39.45 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=60.8
Q ss_pred ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERL 122 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~ 122 (158)
.++.+|+++.++.. . ...++......+...+.+.... ....++.++++++++.+.+ ...+++++++.++++.+
T Consensus 254 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 332 (343)
T cd08235 254 LVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA-SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELA 332 (343)
T ss_pred HhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC-ChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHH
Confidence 45677888887754 2 2333445556677778777666 6677788899999998862 34789999999999999
Q ss_pred HcCCcceeEEE
Q 040822 123 ENRDVKYRFVI 133 (158)
Q Consensus 123 ~~~~~~~k~vl 133 (158)
..+. .+|.++
T Consensus 333 ~~~~-~~k~vi 342 (343)
T cd08235 333 ADGK-SLKIVI 342 (343)
T ss_pred hCCC-cEEEEe
Confidence 8887 777764
No 154
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=96.00 E-value=0.072 Score=38.88 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=58.5
Q ss_pred ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~ 124 (158)
.++.+|+++.++.. .....+...+..+...+.+.... ...++++++++.++.+++ +.+++++++++++++.+..
T Consensus 251 ~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 328 (339)
T cd08232 251 VVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRF--DDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAAD 328 (339)
T ss_pred HHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecC--HHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHh
Confidence 45677888887644 23333333345566677666533 456778889999988753 4478999999999999987
Q ss_pred CCcceeEEEE
Q 040822 125 RDVKYRFVID 134 (158)
Q Consensus 125 ~~~~~k~vl~ 134 (158)
+...+|.+++
T Consensus 329 ~~~~gkvvv~ 338 (339)
T cd08232 329 RTRSVKVQLS 338 (339)
T ss_pred CCCceeEEEe
Confidence 7777888764
No 155
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=95.96 E-value=0.078 Score=38.28 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=58.1
Q ss_pred cccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC------HHHHHHHHHHHHhCCcccce-EEEecccHHHHHH
Q 040822 50 ASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG------TQETKEMVEFCAENGIYPEI-EIIPIQYVNGALE 120 (158)
Q Consensus 50 ~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~------~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~ 120 (158)
++..|+++.++.. ....++....+.+...+.+.... . ...+++++++++++.+.+.+ ..+++++++++++
T Consensus 231 l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~ 309 (324)
T cd08244 231 LAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGV-QAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHA 309 (324)
T ss_pred hccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecc-cCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHH
Confidence 5677888888765 22233434445667777766543 2 23356678888888887544 7899999999999
Q ss_pred HHHcCCcceeEEEE
Q 040822 121 RLENRDVKYRFVID 134 (158)
Q Consensus 121 ~~~~~~~~~k~vl~ 134 (158)
.+.++...+|.+++
T Consensus 310 ~~~~~~~~~kvv~~ 323 (324)
T cd08244 310 ALEARSTVGKVLLL 323 (324)
T ss_pred HHHcCCCCceEEEe
Confidence 99888777787753
No 156
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=95.87 E-value=0.12 Score=38.37 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEEe
Q 040822 87 GTQETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVIDI 135 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~~ 135 (158)
.....+.+.++++++.+++.+ ++||+++..++++++.+....||.++.+
T Consensus 296 ~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~ 345 (347)
T KOG1198|consen 296 SAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEK 345 (347)
T ss_pred CHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEe
Confidence 566678889999999998754 8999999999999999988899998765
No 157
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=95.84 E-value=0.055 Score=39.82 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=57.5
Q ss_pred ccccCCEEEEEcCC-Cc--eeeee--hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ce-EEEecccHHHHH
Q 040822 49 FASIAGVYVIVEVP-KE--VKFKT--VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EI-EIIPIQYVNGAL 119 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~--~~~~~--~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i-~v~~~~~~~~a~ 119 (158)
.++.+|+++.++.. .. ..++. .....+...+.+.........+++++++++++.+++ ++ +.++++++++++
T Consensus 255 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~ 334 (351)
T cd08285 255 VLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEAL 334 (351)
T ss_pred HhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHH
Confidence 45678899988765 22 23321 222334556666554303456788999999999886 33 358999999999
Q ss_pred HHHHcCCc-ceeEEEE
Q 040822 120 ERLENRDV-KYRFVID 134 (158)
Q Consensus 120 ~~~~~~~~-~~k~vl~ 134 (158)
+.+++++. ..|.++.
T Consensus 335 ~~~~~~~~~~~k~~~~ 350 (351)
T cd08285 335 MLMKDKPDDLIKPVII 350 (351)
T ss_pred HHHhcccCCeEEEEEe
Confidence 99988764 4677654
No 158
>PLN02702 L-idonate 5-dehydrogenase
Probab=95.83 E-value=0.094 Score=38.84 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=59.3
Q ss_pred ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEec--ccHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPI--QYVNGALERL 122 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~--~~~~~a~~~~ 122 (158)
.++.+|+++.++.. .........+..+...+.+.... ...++.++++++++.+. + ..+.|++ ++++++++.+
T Consensus 274 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~ 351 (364)
T PLN02702 274 ATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRY--RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS 351 (364)
T ss_pred HHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccC--hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHH
Confidence 46778899888855 33333445566778888887654 35667889999999875 2 3466555 7999999998
Q ss_pred HcCCcceeEEEE
Q 040822 123 ENRDVKYRFVID 134 (158)
Q Consensus 123 ~~~~~~~k~vl~ 134 (158)
......+|.++.
T Consensus 352 ~~~~~~~kvv~~ 363 (364)
T PLN02702 352 ARGGNAIKVMFN 363 (364)
T ss_pred hcCCCceEEEEe
Confidence 877666777753
No 159
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=95.46 E-value=0.16 Score=37.20 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=57.5
Q ss_pred ccccCCEEEEEcCC-Cceeeeeh-hhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTV-NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLE 123 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~ 123 (158)
.++.+|+++.++.+ .....+.. .+..+...+.+.........+.+++++++++.++ + +...++++++.++++.+.
T Consensus 250 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~ 329 (340)
T TIGR00692 250 AVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMR 329 (340)
T ss_pred hhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHh
Confidence 45678899888765 32332222 4555666666544220224457788999999886 3 358899999999999988
Q ss_pred cCCcceeEEEEe
Q 040822 124 NRDVKYRFVIDI 135 (158)
Q Consensus 124 ~~~~~~k~vl~~ 135 (158)
++. .+|.+++|
T Consensus 330 ~~~-~gkvvv~~ 340 (340)
T TIGR00692 330 SGQ-TGKVILSL 340 (340)
T ss_pred cCC-CceEEEeC
Confidence 776 47887653
No 160
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=95.25 E-value=0.1 Score=38.12 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=58.9
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHH----------HHHHHHHHHHhCCcccc-eEEE---ec
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQ----------ETKEMVEFCAENGIYPE-IEII---PI 112 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~----------~~~~~~~l~~~~~i~~~-i~v~---~~ 112 (158)
.++..|+++.++.. .+..++....+.++.++.+.... ... .++++++++.++.+.+. ..++ ++
T Consensus 240 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 318 (341)
T cd08290 240 LLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLT-RWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPL 318 (341)
T ss_pred HhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecH-HHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCH
Confidence 45678898888754 23334443446677888877654 221 35677888888888763 3567 99
Q ss_pred ccHHHHHHHHHcCCcceeEEEE
Q 040822 113 QYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 113 ~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
++++++++.+..+...+|.++.
T Consensus 319 ~~~~~a~~~~~~~~~~~k~v~~ 340 (341)
T cd08290 319 EEFKDALANALKGGGGGKQVLV 340 (341)
T ss_pred HHHHHHHHHHhhcCCCCeEEEe
Confidence 9999999999887777787754
No 161
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=95.16 E-value=0.14 Score=36.96 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred ccccCCEEEEEcCC-C-ceeeeehhhhhccceeEEeeecCCH----------HHHHHHHHHHHhCCcccc-eEEEecccH
Q 040822 49 FASIAGVYVIVEVP-K-EVKFKTVNLIMEMRTIAGSIVGGGT----------QETKEMVEFCAENGIYPE-IEIIPIQYV 115 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~-~~~~~~~~~~~~~~~i~g~~~~~~~----------~~~~~~~~l~~~~~i~~~-i~v~~~~~~ 115 (158)
.++..|+++.++.. . ...++...+..++.++.+.... .. ..++++++++.++.+.+. .+.++++++
T Consensus 226 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 304 (323)
T cd05282 226 SLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLR-QWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDF 304 (323)
T ss_pred hhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEeh-HhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHH
Confidence 45677888888765 2 2233444444467777776654 32 235667788888888754 478999999
Q ss_pred HHHHHHHHcCCcceeEEE
Q 040822 116 NGALERLENRDVKYRFVI 133 (158)
Q Consensus 116 ~~a~~~~~~~~~~~k~vl 133 (158)
+++++.+......+|.++
T Consensus 305 ~~a~~~~~~~~~~~kvv~ 322 (323)
T cd05282 305 EEAVAAAEQPGRGGKVLL 322 (323)
T ss_pred HHHHHHHhcCCCCceEee
Confidence 999999987766666654
No 162
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=95.12 E-value=0.17 Score=37.90 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=57.1
Q ss_pred ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHc
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~ 124 (158)
.++.+|+++.++.. ....+....+.....++.+.........+++++++++++.+++ ..+++++++++++++...+
T Consensus 296 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~ 375 (384)
T cd08265 296 SIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASE 375 (384)
T ss_pred HHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhc
Confidence 45678999988865 3333344455555667777653203345788999999998875 4578999999999998655
Q ss_pred CCcceeEE
Q 040822 125 RDVKYRFV 132 (158)
Q Consensus 125 ~~~~~k~v 132 (158)
+ ..+|.+
T Consensus 376 ~-~~~kvv 382 (384)
T cd08265 376 R-TDGKIT 382 (384)
T ss_pred C-CCceEE
Confidence 4 455665
No 163
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=95.00 E-value=0.21 Score=36.51 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=55.2
Q ss_pred ccccCCEEEEEcCC-Cceee-eehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVKF-KTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERLE 123 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~-~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~ 123 (158)
.++.+|+++.++.. ..... .....+.++..+.+.... ....++++++++.++.+++ ....+++++++++++.+.
T Consensus 256 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 334 (347)
T cd05278 256 VVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVP-VRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFD 334 (347)
T ss_pred HhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccC-chhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHh
Confidence 45677888887754 22111 111223455666665544 4566788889999998875 357899999999999887
Q ss_pred cCCc-ceeEEE
Q 040822 124 NRDV-KYRFVI 133 (158)
Q Consensus 124 ~~~~-~~k~vl 133 (158)
.... ..|.++
T Consensus 335 ~~~~~~~~~vv 345 (347)
T cd05278 335 NKPDGCIKVVI 345 (347)
T ss_pred cCCCCceEEEe
Confidence 6655 456654
No 164
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.99 E-value=0.0019 Score=40.47 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeC-----cccc-cCCccCcCccccCCCC
Q 040822 92 KEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIG-----QHLE-LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 92 ~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~-----~~~~-~t~g~g~d~v~d~~~~ 156 (158)
..++++++..+.++++. +.-++.++.+++... ..+++.. +.++ +++++|+|+|||++|.
T Consensus 4 ~~a~q~ak~~G~~vi~~----~~~~~k~~~~~~~Ga--~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 4 LMAIQLAKAMGAKVIAT----DRSEEKLELAKELGA--DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHTTSEEEEE----ESSHHHHHHHHHTTE--SEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred HHHHHHHHHcCCEEEEE----ECCHHHHHHHHhhcc--cccccccccccccccccccccccceEEEEecCc
Confidence 56789999888544332 222334455555443 3344443 3566 7999999999999984
No 165
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=94.85 E-value=0.25 Score=35.47 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=57.8
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC----HHHHHHHHHHHHhCCccc---ceEEEecccHHHHH
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG----TQETKEMVEFCAENGIYP---EIEIIPIQYVNGAL 119 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~ 119 (158)
.++.+|+++.++.. .+..++...+......+.+.... . ...+++++++++++.+++ ....++++++++++
T Consensus 218 ~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 296 (312)
T cd08269 218 LVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVER-DPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAF 296 (312)
T ss_pred HhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEeccc-CccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHH
Confidence 45677888888754 23334444556666777665433 2 245778889999998875 34779999999999
Q ss_pred HHHHcCCc-ceeEEE
Q 040822 120 ERLENRDV-KYRFVI 133 (158)
Q Consensus 120 ~~~~~~~~-~~k~vl 133 (158)
+.+.+++. .+|.++
T Consensus 297 ~~~~~~~~~~~~~~~ 311 (312)
T cd08269 297 EAARRRPDGFIKGVI 311 (312)
T ss_pred HHHHhCCCCceEEEe
Confidence 99888754 356653
No 166
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.75 E-value=0.3 Score=35.80 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=57.6
Q ss_pred ccccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHHc
Q 040822 49 FASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLEN 124 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~~ 124 (158)
.++.+|+++.++.+ ....++...+..+...+.+.... . ..++++++++.++.+. + ..++++++++.++++.+..
T Consensus 254 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~ 331 (343)
T cd05285 254 ATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRY-A-NTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAK 331 (343)
T ss_pred HhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccC-h-HHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHc
Confidence 45678898888765 32333334555667777776555 3 5677888999888764 2 3478999999999999887
Q ss_pred CCc-ceeEEE
Q 040822 125 RDV-KYRFVI 133 (158)
Q Consensus 125 ~~~-~~k~vl 133 (158)
+.. .+|+++
T Consensus 332 ~~~~~~k~~~ 341 (343)
T cd05285 332 GKKGVIKVVI 341 (343)
T ss_pred CCCCeeEEEE
Confidence 643 367764
No 167
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=94.49 E-value=0.3 Score=35.70 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=56.7
Q ss_pred ccccCCEEEEEcCC-Cceee---eehhhhhccceeEEeeecCC-----HHHHHHHHHHHHhCCcc--c-ceEEEecccHH
Q 040822 49 FASIAGVYVIVEVP-KEVKF---KTVNLIMEMRTIAGSIVGGG-----TQETKEMVEFCAENGIY--P-EIEIIPIQYVN 116 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~---~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~ 116 (158)
.++.+|+++.++.+ ....+ ....++.++..+.+.... . ...++++++++.++.+. + ....+++++++
T Consensus 247 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 325 (343)
T cd08236 247 LARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNS-YSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGP 325 (343)
T ss_pred HhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeec-cccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHH
Confidence 45678898888865 32211 223445667777777654 4 45577888889888875 3 34789999999
Q ss_pred HHHHHHHc-CCcceeEE
Q 040822 117 GALERLEN-RDVKYRFV 132 (158)
Q Consensus 117 ~a~~~~~~-~~~~~k~v 132 (158)
++++.+++ ....+|.+
T Consensus 326 ~~~~~~~~~~~~~~k~v 342 (343)
T cd08236 326 AAFERLADREEFSGKVL 342 (343)
T ss_pred HHHHHHHcCCCCeeEEe
Confidence 99999987 44455554
No 168
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=94.47 E-value=0.34 Score=35.08 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=53.3
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC-HHHHHHHHHHHHh----CCcc-cceEEEecccHHHHHH
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG-TQETKEMVEFCAE----NGIY-PEIEIIPIQYVNGALE 120 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~-~~~~~~~~~l~~~----~~i~-~~i~v~~~~~~~~a~~ 120 (158)
.++.+|+++.+|.+ ...+.+...++.++.++.+...... ......+++.+.. .+.. .+.+++++++++++++
T Consensus 232 ~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~ 311 (326)
T cd08289 232 TLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALK 311 (326)
T ss_pred HhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHH
Confidence 35678999999865 2333334455567788888643201 2222333333222 1111 2468899999999999
Q ss_pred HHHcCCcceeEEEE
Q 040822 121 RLENRDVKYRFVID 134 (158)
Q Consensus 121 ~~~~~~~~~k~vl~ 134 (158)
.+.++...+|.+++
T Consensus 312 ~~~~~~~~gkvvv~ 325 (326)
T cd08289 312 QILQGRVTGRTVVK 325 (326)
T ss_pred HHhcCcccceEEEe
Confidence 99988877787754
No 169
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.32 E-value=0.35 Score=35.41 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=56.5
Q ss_pred ccccCCEEEEEcCC-Cceeeee-hhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVKFKT-VNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIY--P-EIEIIPIQYVNGALERLE 123 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~~~-~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~~~ 123 (158)
.++.+|+++.++.. .....+. ..+..+...+.+.........++++++++.++.+. + ...++++++++++++.+.
T Consensus 251 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 330 (341)
T cd05281 251 ALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMR 330 (341)
T ss_pred HhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHh
Confidence 35678888888755 3222222 22455566666654320234567888999998875 2 346789999999999998
Q ss_pred cCCcceeEEEE
Q 040822 124 NRDVKYRFVID 134 (158)
Q Consensus 124 ~~~~~~k~vl~ 134 (158)
.+. .+|.+++
T Consensus 331 ~~~-~gk~vv~ 340 (341)
T cd05281 331 SGK-CGKVVLY 340 (341)
T ss_pred cCC-CceEEec
Confidence 887 7888753
No 170
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=94.29 E-value=0.42 Score=34.74 Aligned_cols=82 Identities=18% Similarity=0.263 Sum_probs=56.6
Q ss_pred ccccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALERL 122 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~ 122 (158)
.++.+|+++.++.. . ...+....+..+...+.+.... ...+++++++++++.+.+ ...++++++++++++.+
T Consensus 246 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 323 (334)
T cd08234 246 YARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN--PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGM 323 (334)
T ss_pred HHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC--HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHH
Confidence 45678888888755 2 2333334444456677666543 455788889999998863 34789999999999999
Q ss_pred HcCCcceeEEE
Q 040822 123 ENRDVKYRFVI 133 (158)
Q Consensus 123 ~~~~~~~k~vl 133 (158)
.+ ...+|.++
T Consensus 324 ~~-~~~~k~vi 333 (334)
T cd08234 324 RS-GGALKVVV 333 (334)
T ss_pred hc-CCceEEEe
Confidence 87 55667653
No 171
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=94.25 E-value=0.38 Score=35.72 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=55.9
Q ss_pred cccCCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc--ceEEEecccHHHHHHHH
Q 040822 50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP--EIEIIPIQYVNGALERL 122 (158)
Q Consensus 50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~--~i~v~~~~~~~~a~~~~ 122 (158)
++.+|+++.++.+ ....++...+..+...+.+..... ....++++++++.++.+.+ .++.+++++++++++.+
T Consensus 275 l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~ 354 (365)
T cd08278 275 LAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADS 354 (365)
T ss_pred hccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHH
Confidence 4567888888764 233455555546677777665430 1234567888888888753 45789999999999998
Q ss_pred HcCCcceeEEE
Q 040822 123 ENRDVKYRFVI 133 (158)
Q Consensus 123 ~~~~~~~k~vl 133 (158)
+.+.. .|.++
T Consensus 355 ~~~~~-~k~~~ 364 (365)
T cd08278 355 ESGKV-IKPVL 364 (365)
T ss_pred HCCCc-eEEEE
Confidence 77653 35553
No 172
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=93.77 E-value=0.59 Score=34.62 Aligned_cols=83 Identities=14% Similarity=0.273 Sum_probs=56.4
Q ss_pred ccccCCEEEEEcCC---CceeeeehhhhhccceeEEeeec--CCHHHHHHHHHHHHhCCccc---ceEEEecccHHHHHH
Q 040822 49 FASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVG--GGTQETKEMVEFCAENGIYP---EIEIIPIQYVNGALE 120 (158)
Q Consensus 49 ~~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~--~~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~ 120 (158)
.++.+|+++.++.. ....++...+......+.++..+ .....+++++++++++.+++ ...++++++++++++
T Consensus 271 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~ 350 (363)
T cd08279 271 MTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFA 350 (363)
T ss_pred HhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHH
Confidence 34567888887654 23445555555556666666432 03466788899999998875 447899999999999
Q ss_pred HHHcCCcceeEE
Q 040822 121 RLENRDVKYRFV 132 (158)
Q Consensus 121 ~~~~~~~~~k~v 132 (158)
.+.++... |.+
T Consensus 351 ~~~~~~~~-~~~ 361 (363)
T cd08279 351 DMLAGENA-RGV 361 (363)
T ss_pred HHhcCCce-eEE
Confidence 98876643 444
No 173
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=93.77 E-value=0.091 Score=31.55 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.2
Q ss_pred cEEEEEeCCCCC----CCCCCCEEEe
Q 040822 16 VGAVKEVGSNVK----CFEVGDRVGV 37 (158)
Q Consensus 16 ~G~V~~vG~~v~----~~~vGdrV~~ 37 (158)
.|+|+++|++.. .+++||+|+.
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLL 71 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEE
Confidence 499999999753 4899999964
No 174
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=93.46 E-value=0.11 Score=30.88 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=19.2
Q ss_pred ccEEEEEeCCCC---------CCCCCCCEEEec
Q 040822 15 IVGAVKEVGSNV---------KCFEVGDRVGVG 38 (158)
Q Consensus 15 ~~G~V~~vG~~v---------~~~~vGdrV~~~ 38 (158)
..|+|.++|++. ..+++||+|+..
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP 67 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence 469999999973 359999999643
No 175
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=93.13 E-value=0.12 Score=30.84 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=19.0
Q ss_pred ccEEEEEeCCCCC---------CCCCCCEEEec
Q 040822 15 IVGAVKEVGSNVK---------CFEVGDRVGVG 38 (158)
Q Consensus 15 ~~G~V~~vG~~v~---------~~~vGdrV~~~ 38 (158)
..|+|+++|++.. .+++||+|+..
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 4699999999642 48999999653
No 176
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=92.46 E-value=0.78 Score=33.27 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCccc---ceEEEecccHHHHHHHHHcCCcceeEEE
Q 040822 91 TKEMVEFCAENGIYP---EIEIIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 91 ~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
++++++++.++.+++ ..+.+++++++++++.++.+...+|.++
T Consensus 280 ~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 325 (327)
T PRK10754 280 SNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLL 325 (327)
T ss_pred HHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEE
Confidence 346788899998874 2478999999999999988888888876
No 177
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=92.33 E-value=0.66 Score=33.59 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=55.0
Q ss_pred ccccCCEEEEEcCC-Cc-e-----eeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccc-eEEEecccH
Q 040822 49 FASIAGVYVIVEVP-KE-V-----KFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPE-IEIIPIQYV 115 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~-~-----~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~-i~v~~~~~~ 115 (158)
.++.+|+++.++.. .. . .++....+.++.++.+.... .. ..+.++++++.++.+++. ...++++++
T Consensus 233 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~ 311 (329)
T cd05288 233 LLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVS-DYADRFPEALAELAKWLAEGKLKYREDVVEGLENA 311 (329)
T ss_pred hcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecch-hhHHHHHHHHHHHHHHHHCCCccccccccccHHHH
Confidence 35678888888754 21 1 12234445667777776554 33 235677888888888753 356899999
Q ss_pred HHHHHHHHcCCcceeEE
Q 040822 116 NGALERLENRDVKYRFV 132 (158)
Q Consensus 116 ~~a~~~~~~~~~~~k~v 132 (158)
.++++.+..+...+|.+
T Consensus 312 ~~a~~~~~~~~~~gkvv 328 (329)
T cd05288 312 PEAFLGLFTGKNTGKLV 328 (329)
T ss_pred HHHHHHHhcCCCcccee
Confidence 99999988766555654
No 178
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.18 E-value=0.45 Score=34.82 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 91 TKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 91 ~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+++++++.+++.+++.. ..+++++++++++.+.++...+|.++.
T Consensus 300 ~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~ 344 (345)
T cd08293 300 IAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVK 344 (345)
T ss_pred HHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEE
Confidence 56677899999988654 456999999999999888877888765
No 179
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=92.17 E-value=1.8 Score=32.26 Aligned_cols=80 Identities=24% Similarity=0.381 Sum_probs=52.2
Q ss_pred ccCCEEEEEcCC-C--ceeeeehhhhhccceeEEeeecCCH---HHHHHHHHHHHhCCcc--c-ceEEEecccHHHHHHH
Q 040822 51 SIAGVYVIVEVP-K--EVKFKTVNLIMEMRTIAGSIVGGGT---QETKEMVEFCAENGIY--P-EIEIIPIQYVNGALER 121 (158)
Q Consensus 51 ~~~g~~v~~g~~-~--~~~~~~~~~~~~~~~i~g~~~~~~~---~~~~~~~~l~~~~~i~--~-~i~v~~~~~~~~a~~~ 121 (158)
+.+|+++.++.. . .+.+.... +..+.++.++..+ .. ..+.++++.+.++.++ + +.+.+++++++++++.
T Consensus 283 ~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~ 360 (373)
T cd08299 283 EGYGVSVIVGVPPSSQNLSINPML-LLTGRTWKGAVFG-GWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDL 360 (373)
T ss_pred cCCCEEEEEccCCCCceeecCHHH-HhcCCeEEEEEec-CCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHH
Confidence 357899999876 3 23333322 3356778887665 32 4566777777666544 3 4578999999999998
Q ss_pred HHcCCcceeEEE
Q 040822 122 LENRDVKYRFVI 133 (158)
Q Consensus 122 ~~~~~~~~k~vl 133 (158)
+++... .|.++
T Consensus 361 ~~~~~~-~k~~~ 371 (373)
T cd08299 361 LRSGKS-IRTVL 371 (373)
T ss_pred HhCCCc-ceEEE
Confidence 876553 35554
No 180
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=91.87 E-value=1.4 Score=32.72 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=55.0
Q ss_pred ccc-cCCEEEEEcCC---CceeeeehhhhhccceeEEeeecC--CHHHHHHHHHHHHhCCccc---ceEEEecccHHHHH
Q 040822 49 FAS-IAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIVGG--GTQETKEMVEFCAENGIYP---EIEIIPIQYVNGAL 119 (158)
Q Consensus 49 ~~~-~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~l~~~~~i~~---~i~v~~~~~~~~a~ 119 (158)
.++ .+|+++.++.. ....++...+ .+...+.+.+.+. ....+..++++++++.+++ .+++++++++++++
T Consensus 273 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~ 351 (365)
T cd05279 273 ATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGF 351 (365)
T ss_pred HhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHH
Confidence 345 78888888754 3445555555 5667787775430 3455778888998888864 45789999999999
Q ss_pred HHHHcCCc
Q 040822 120 ERLENRDV 127 (158)
Q Consensus 120 ~~~~~~~~ 127 (158)
+.+++...
T Consensus 352 ~~~~~~~~ 359 (365)
T cd05279 352 DLMRSGES 359 (365)
T ss_pred HHHhCCCc
Confidence 98876543
No 181
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=91.86 E-value=0.47 Score=34.30 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=42.3
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhC
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAEN 101 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~ 101 (158)
.++.+|+++.++.. ....++...++++++++.++..+ +..++++++++++++
T Consensus 253 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~ 306 (306)
T cd08258 253 LLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSS-TPASWETALRLLASG 306 (306)
T ss_pred HhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecC-chHhHHHHHHHHhcC
Confidence 46778999988876 24555667777899999999999 999999999998865
No 182
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=91.85 E-value=0.048 Score=39.63 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=80.9
Q ss_pred CCCCccccccccEEEEEeCCCCCC-CCCCCEEEecCCccccccccccccCCEEEEEcCCCceee--------ee---hhh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKC-FEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKF--------KT---VNL 72 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~-~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~--------~~---~~~ 72 (158)
+++|.++|+|++|+|+++|++|++ |++||||++.... .+++++|+...... +..+|+.++. .. ..+
T Consensus 58 ~~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~-~g~~a~~~~v~~~~-~~~iP~~~~~~~aa~~~~~~~ta~~~ 135 (324)
T cd08291 58 KALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGS-YGTYAEYAVADAQQ-CLPLPDGVSFEQGASSFVNPLTALGM 135 (324)
T ss_pred CCCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCC-CCcchheeeecHHH-eEECCCCCCHHHHhhhcccHHHHHHH
Confidence 356899999999999999999986 9999999875431 13455555444322 2234422111 10 011
Q ss_pred h-----hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE-----eCcccc-c
Q 040822 73 I-----MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID-----IGQHLE-L 141 (158)
Q Consensus 73 ~-----~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~-----~~~~~~-~ 141 (158)
. .++..+... .+ .-...+.++++++..+++++....+- +..+.+++... ..+++ +.+.++ .
T Consensus 136 ~~~~~~~~~~vlv~~-~g-~g~vG~~a~q~a~~~G~~vi~~~~~~----~~~~~~~~~g~--~~~i~~~~~~~~~~v~~~ 207 (324)
T cd08291 136 LETAREEGAKAVVHT-AA-ASALGRMLVRLCKADGIKVINIVRRK----EQVDLLKKIGA--EYVLNSSDPDFLEDLKEL 207 (324)
T ss_pred HHhhccCCCcEEEEc-cC-ccHHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCC--cEEEECCCccHHHHHHHH
Confidence 1 112222211 12 23445778899999888754322222 22333333222 22333 233455 6
Q ss_pred CCccCcCccccCCCCC
Q 040822 142 KPRVGPWSCMDKIPSR 157 (158)
Q Consensus 142 t~g~g~d~v~d~~~~~ 157 (158)
+.++|+|+|+|++|++
T Consensus 208 ~~~~~~d~vid~~g~~ 223 (324)
T cd08291 208 IAKLNATIFFDAVGGG 223 (324)
T ss_pred hCCCCCcEEEECCCcH
Confidence 8888999999998863
No 183
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=91.81 E-value=1.8 Score=31.04 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCcccc-e-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 90 ETKEMVEFCAENGIYPE-I-EIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 90 ~~~~~~~l~~~~~i~~~-i-~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
.+..+++++.++.+++. . +.+++++++++++.+.+....++.+++
T Consensus 279 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~ 325 (326)
T cd08272 279 ILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVID 325 (326)
T ss_pred HHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEE
Confidence 35667788888888754 3 789999999999998877666677654
No 184
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=91.73 E-value=1.8 Score=30.94 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=56.3
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCCH----------HHHHHHHHHHHhCCccc-ceEEEecccH
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGGT----------QETKEMVEFCAENGIYP-EIEIIPIQYV 115 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~~----------~~~~~~~~l~~~~~i~~-~i~v~~~~~~ 115 (158)
.++.+|+++.++.. ....++...++.++.++.+.... .. ....+++++.+++.+++ .+..++++++
T Consensus 227 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 305 (325)
T TIGR02824 227 ALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLR-ARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDA 305 (325)
T ss_pred hhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehh-hcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHH
Confidence 34677888888755 22234444445678888877644 21 11245667777887764 4477999999
Q ss_pred HHHHHHHHcCCcceeEEEE
Q 040822 116 NGALERLENRDVKYRFVID 134 (158)
Q Consensus 116 ~~a~~~~~~~~~~~k~vl~ 134 (158)
+++++.+......+|.+++
T Consensus 306 ~~~~~~~~~~~~~~~~v~~ 324 (325)
T TIGR02824 306 AQAHALMESGDHIGKIVLT 324 (325)
T ss_pred HHHHHHHHhCCCcceEEEe
Confidence 9999998877666676643
No 185
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=91.68 E-value=1.4 Score=31.42 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=53.5
Q ss_pred ccccCCEEEEEcCC-Ccee-eeehhhhhccceeEEeeecCCH---------HHHHHHHHHHHhCCcccc-eEEEecccHH
Q 040822 49 FASIAGVYVIVEVP-KEVK-FKTVNLIMEMRTIAGSIVGGGT---------QETKEMVEFCAENGIYPE-IEIIPIQYVN 116 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~-~~~~~~~~~~~~i~g~~~~~~~---------~~~~~~~~l~~~~~i~~~-i~v~~~~~~~ 116 (158)
.++..|+++.++.+ .... ++......++..+.+.... .. ..++++++++.++.+.+. ...+++++++
T Consensus 227 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (323)
T cd08241 227 SLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWG-AYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAA 305 (323)
T ss_pred hhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecc-cccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHH
Confidence 35667888887755 2222 2233344566677766543 21 234567788888887753 4689999999
Q ss_pred HHHHHHHcCCcceeEE
Q 040822 117 GALERLENRDVKYRFV 132 (158)
Q Consensus 117 ~a~~~~~~~~~~~k~v 132 (158)
++++.+......++.+
T Consensus 306 ~~~~~~~~~~~~~~vv 321 (323)
T cd08241 306 EALRALADRKATGKVV 321 (323)
T ss_pred HHHHHHHhCCCCCcEE
Confidence 9999888766555655
No 186
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.27 Score=29.15 Aligned_cols=22 Identities=41% Similarity=0.451 Sum_probs=16.9
Q ss_pred cEEEEEeCCCC---------CCCCCCCEEEe
Q 040822 16 VGAVKEVGSNV---------KCFEVGDRVGV 37 (158)
Q Consensus 16 ~G~V~~vG~~v---------~~~~vGdrV~~ 37 (158)
-|+|++||++- -.+++||+|+.
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf 67 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLF 67 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEE
Confidence 48999999742 13899999965
No 187
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=91.44 E-value=1.3 Score=32.14 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=54.3
Q ss_pred ccccCCEEEEEcCCC-c-----------eeeeehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccc---eE
Q 040822 49 FASIAGVYVIVEVPK-E-----------VKFKTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPE---IE 108 (158)
Q Consensus 49 ~~~~~g~~v~~g~~~-~-----------~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~---i~ 108 (158)
.++.+|+++.++.+. . ..+ ....+.++..+.+.... .. ..++++++++.++.+++. .+
T Consensus 226 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 303 (329)
T cd08250 226 NLALKGRLIVIGFISGYQSGTGPSPVKGATL-PPKLLAKSASVRGFFLP-HYAKLIPQHLDRLLQLYQRGKLVCEVDPTR 303 (329)
T ss_pred HhccCCeEEEEecccCCcccCcccccccccc-cHHHhhcCceEEEEEhH-HHHHHHHHHHHHHHHHHHCCCeeeeECCcc
Confidence 356788888887541 1 011 12334566777776543 22 235677888888888762 34
Q ss_pred EEecccHHHHHHHHHcCCcceeEEE
Q 040822 109 IIPIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 109 v~~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
.+++++++++++.+..+...+|.++
T Consensus 304 ~~~~~~~~~a~~~~~~~~~~~kvvv 328 (329)
T cd08250 304 FRGLESVADAVDYLYSGKNIGKVVV 328 (329)
T ss_pred ccCHHHHHHHHHHHHcCCCCceEEe
Confidence 6899999999999987766667654
No 188
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=91.22 E-value=0.35 Score=28.56 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.2
Q ss_pred ccEEEEEeCCCCC----CCCCCCEEEe
Q 040822 15 IVGAVKEVGSNVK----CFEVGDRVGV 37 (158)
Q Consensus 15 ~~G~V~~vG~~v~----~~~vGdrV~~ 37 (158)
..|+|+++|++.. .+++||+|+.
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~ 62 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIF 62 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEE
Confidence 4699999997542 4899999964
No 189
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=91.13 E-value=2.1 Score=30.52 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=52.5
Q ss_pred ccccCCEEEEEcCC-Cc-eeeeehhhhhccceeEEeeec---CCHHH----HHHHHHHHHhCCccc-ceEEEecccHHHH
Q 040822 49 FASIAGVYVIVEVP-KE-VKFKTVNLIMEMRTIAGSIVG---GGTQE----TKEMVEFCAENGIYP-EIEIIPIQYVNGA 118 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~-~~~~~~~~~~~~~~i~g~~~~---~~~~~----~~~~~~l~~~~~i~~-~i~v~~~~~~~~a 118 (158)
.++.+|+++.++.. .. ..++...+..+...+.+.... ..... ++++++++.++.+++ ..+.+++++++++
T Consensus 224 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 303 (320)
T cd05286 224 SLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQA 303 (320)
T ss_pred hhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHH
Confidence 45678888888755 22 122333333455555443221 01222 345777888888775 3468999999999
Q ss_pred HHHHHcCCcceeEEE
Q 040822 119 LERLENRDVKYRFVI 133 (158)
Q Consensus 119 ~~~~~~~~~~~k~vl 133 (158)
++.+..+...++.++
T Consensus 304 ~~~~~~~~~~~~vv~ 318 (320)
T cd05286 304 HRDLESRKTTGKLLL 318 (320)
T ss_pred HHHHHcCCCCceEEE
Confidence 999987776677764
No 190
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=90.87 E-value=1.6 Score=31.68 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=52.4
Q ss_pred ccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCC------------HHHHHHHHHHHHhCCcccce----EEEec
Q 040822 49 FASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGG------------TQETKEMVEFCAENGIYPEI----EIIPI 112 (158)
Q Consensus 49 ~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~------------~~~~~~~~~l~~~~~i~~~i----~v~~~ 112 (158)
.++.+|+++.++... ..++...+..++..+.+.... . ...++++++++.++.+++.. ..+++
T Consensus 237 ~l~~~g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (336)
T cd08252 237 LIAPQGHICLIVDPQ-EPLDLGPLKSKSASFHWEFMF-TRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINA 314 (336)
T ss_pred HhcCCCEEEEecCCC-CcccchhhhcccceEEEEEee-ccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCH
Confidence 456778888877541 222333333455566554322 1 12356778888889887642 24799
Q ss_pred ccHHHHHHHHHcCCcceeEEE
Q 040822 113 QYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 113 ~~~~~a~~~~~~~~~~~k~vl 133 (158)
++++++++.+.++...+|.++
T Consensus 315 ~~~~~a~~~~~~~~~~~~vv~ 335 (336)
T cd08252 315 ENLREAHALLESGKTIGKIVL 335 (336)
T ss_pred HHHHHHHHHHHcCCccceEEe
Confidence 999999999988776666653
No 191
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=90.67 E-value=0.28 Score=29.07 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=17.1
Q ss_pred ccEEEEEeCC--------CC-CCCCCCCEEEec
Q 040822 15 IVGAVKEVGS--------NV-KCFEVGDRVGVG 38 (158)
Q Consensus 15 ~~G~V~~vG~--------~v-~~~~vGdrV~~~ 38 (158)
..|+|+++|+ .+ ..+++||+|...
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFP 67 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEE
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecc
Confidence 4699999999 33 368999999653
No 192
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.62 E-value=1.6 Score=31.24 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=53.3
Q ss_pred ccccCCEEEEEcCC-Ccee---eeehhhh--hccceeEEeeecCCH--HHHHHHHHHHHhCCccc-ceEEEecccHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVK---FKTVNLI--MEMRTIAGSIVGGGT--QETKEMVEFCAENGIYP-EIEIIPIQYVNGAL 119 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~---~~~~~~~--~~~~~i~g~~~~~~~--~~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~ 119 (158)
.++.+|+++.+|.+ .... ....... ..+..+.+.... .. ..++.++++.+++.+++ ....++++++++++
T Consensus 227 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~ 305 (320)
T cd08243 227 HLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSG-DVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAH 305 (320)
T ss_pred HhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchh-hhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHH
Confidence 45678898888764 1111 1112222 345556555433 22 34567788888888875 34789999999999
Q ss_pred HHHHcCCcceeEE
Q 040822 120 ERLENRDVKYRFV 132 (158)
Q Consensus 120 ~~~~~~~~~~k~v 132 (158)
+.+..+...+|.+
T Consensus 306 ~~~~~~~~~~kvv 318 (320)
T cd08243 306 AYMESNRAFGKVV 318 (320)
T ss_pred HHHHhCCCCCcEE
Confidence 9998777666765
No 193
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=90.26 E-value=2.3 Score=30.37 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=51.1
Q ss_pred cccCCEEEEEcCC-CceeeeehhhhhccceeEEeeecC-CHHH----HHHHHHHHHhCCcccc-eEEEecccHHHHHHHH
Q 040822 50 ASIAGVYVIVEVP-KEVKFKTVNLIMEMRTIAGSIVGG-GTQE----TKEMVEFCAENGIYPE-IEIIPIQYVNGALERL 122 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~-~~~~----~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~ 122 (158)
++..|+++.++.+ .........++.....+.+...+. .... ...+.+++.++.+++. ..++++++++++++.+
T Consensus 233 l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 312 (325)
T cd08253 233 LAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAV 312 (325)
T ss_pred hCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHH
Confidence 4566777777654 222222333344555565544320 1122 3345566677777653 4789999999999999
Q ss_pred HcCCcceeEEEE
Q 040822 123 ENRDVKYRFVID 134 (158)
Q Consensus 123 ~~~~~~~k~vl~ 134 (158)
..+...+|.+++
T Consensus 313 ~~~~~~~kvv~~ 324 (325)
T cd08253 313 ESGGAIGKVVLD 324 (325)
T ss_pred HcCCCcceEEEe
Confidence 887777777653
No 194
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.24 E-value=1 Score=31.82 Aligned_cols=76 Identities=17% Similarity=0.133 Sum_probs=49.4
Q ss_pred cccccCCEEEEEcCC-Cceeee-ehhhhhccceeEEeeecCC------------HHHHHHHHHHHHhCCccc-ceEEEec
Q 040822 48 NFASIAGVYVIVEVP-KEVKFK-TVNLIMEMRTIAGSIVGGG------------TQETKEMVEFCAENGIYP-EIEIIPI 112 (158)
Q Consensus 48 ~~~~~~g~~v~~g~~-~~~~~~-~~~~~~~~~~i~g~~~~~~------------~~~~~~~~~l~~~~~i~~-~i~v~~~ 112 (158)
..++.+|+++.++.+ .. ... ...+..+...+.+.... . ...+++++++++++.+++ ..+++++
T Consensus 178 ~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 255 (277)
T cd08255 178 RLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVY-GIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPF 255 (277)
T ss_pred HHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeeccc-ccccccccccccccccHHHHHHHHHcCCccccccCccCH
Confidence 346778899988876 32 221 12233344444444322 1 134678889999998875 3478999
Q ss_pred ccHHHHHHHHHcC
Q 040822 113 QYVNGALERLENR 125 (158)
Q Consensus 113 ~~~~~a~~~~~~~ 125 (158)
++++++++.+..+
T Consensus 256 ~~~~~a~~~~~~~ 268 (277)
T cd08255 256 EDAPEAYRLLFED 268 (277)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998765
No 195
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.18 E-value=0.26 Score=36.46 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=36.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~ 50 (158)
..+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|..|
T Consensus 52 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~c~~c 96 (358)
T TIGR03451 52 DEFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRA-VCGQCRAC 96 (358)
T ss_pred ccCCcccccceEEEEEEeCCCCcccCCCCEEEEccCC-CCCCChHH
Confidence 3568999999999999999999999999999875433 45555544
No 196
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=88.84 E-value=2.9 Score=29.68 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=49.4
Q ss_pred ccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCc
Q 040822 49 FASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDV 127 (158)
Q Consensus 49 ~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~ 127 (158)
.++.+|+++.++....... .....+..+...........+.+++++++++.+++. .+.+++++++++++.+.....
T Consensus 227 ~l~~~g~~v~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 303 (309)
T cd05289 227 LVKPGGRLVSIAGPPPAEQ---AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHA 303 (309)
T ss_pred HHhcCcEEEEEcCCCcchh---hhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCC
Confidence 3456777777765411100 222233333333222024567788889988888754 468999999999999887765
Q ss_pred ceeEE
Q 040822 128 KYRFV 132 (158)
Q Consensus 128 ~~k~v 132 (158)
.+|.+
T Consensus 304 ~~kvv 308 (309)
T cd05289 304 RGKVV 308 (309)
T ss_pred CCcEe
Confidence 55543
No 197
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.69 E-value=3.3 Score=29.62 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=49.7
Q ss_pred cccCCEEEEEcCC-Cceeeee----hhhhhccceeEEe-eecCCHHHHHHHHHHHHhCCccc-ceEEEecccHHHHHHHH
Q 040822 50 ASIAGVYVIVEVP-KEVKFKT----VNLIMEMRTIAGS-IVGGGTQETKEMVEFCAENGIYP-EIEIIPIQYVNGALERL 122 (158)
Q Consensus 50 ~~~~g~~v~~g~~-~~~~~~~----~~~~~~~~~i~g~-~~~~~~~~~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~ 122 (158)
++..|+++.++.. ....... .........+... ... ....+.++++++.++.+++ ..+++++++++++++.+
T Consensus 230 l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~ 308 (319)
T cd08267 230 LKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKP-NAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRL 308 (319)
T ss_pred cCCCCEEEEeccccccccccccccchhhccccceEEEEEecC-CHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHH
Confidence 6778899988765 2111111 1111111222222 223 3455778888998888875 44789999999999998
Q ss_pred HcCCcceeEE
Q 040822 123 ENRDVKYRFV 132 (158)
Q Consensus 123 ~~~~~~~k~v 132 (158)
.+....++.+
T Consensus 309 ~~~~~~~~vv 318 (319)
T cd08267 309 KSGRARGKVV 318 (319)
T ss_pred hcCCCCCcEe
Confidence 8765544543
No 198
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.43 E-value=3.5 Score=29.83 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEE
Q 040822 89 QETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 89 ~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
..++.++++++++.+++. .+.+++++++++++.+......+|.+
T Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv 329 (331)
T cd08273 285 QDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIV 329 (331)
T ss_pred HHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEE
Confidence 446678889999988763 47899999999999988777666765
No 199
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=87.41 E-value=0.76 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=27.1
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV 41 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~ 41 (158)
++|-.++|+|.=-|+..+-.++||+|+...+.
T Consensus 59 I~g~~gSg~I~lNGAAAr~~~~GD~vII~sy~ 90 (111)
T cd06919 59 IPGERGSGVICLNGAAARLGQPGDRVIIMAYA 90 (111)
T ss_pred EEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence 67888899999999888889999999776543
No 200
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=87.24 E-value=6.7 Score=28.27 Aligned_cols=86 Identities=22% Similarity=0.364 Sum_probs=54.1
Q ss_pred ccccCCEEEEEcCCC---cee---------------eeehhhhhccceeEEeeecC---CH----HHHHHHHHHHHhCCc
Q 040822 49 FASIAGVYVIVEVPK---EVK---------------FKTVNLIMEMRTIAGSIVGG---GT----QETKEMVEFCAENGI 103 (158)
Q Consensus 49 ~~~~~g~~v~~g~~~---~~~---------------~~~~~~~~~~~~i~g~~~~~---~~----~~~~~~~~l~~~~~i 103 (158)
.++.+|+++.++... ... .....+...+.++.+..... .. ..+.+++++..++.+
T Consensus 225 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (337)
T cd08275 225 LLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKI 304 (337)
T ss_pred hhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCC
Confidence 356678888877541 111 11123455666666654320 11 124567778888887
Q ss_pred ccce-EEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 104 YPEI-EIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 104 ~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
++.. ..+++++++++++.+..+...+|.+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~ 336 (337)
T cd08275 305 KPKIDSVFPFEEVGEAMRRLQSRKNIGKVVLT 336 (337)
T ss_pred CCceeeEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence 7543 679999999999998877766777654
No 201
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.88 E-value=6.8 Score=28.02 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=50.5
Q ss_pred ccccCCEEEEEcCC--CceeeeehhhhhccceeEEeeecCC----HHHH----HHHHHHHHhCCcccc-eEEEecccHHH
Q 040822 49 FASIAGVYVIVEVP--KEVKFKTVNLIMEMRTIAGSIVGGG----TQET----KEMVEFCAENGIYPE-IEIIPIQYVNG 117 (158)
Q Consensus 49 ~~~~~g~~v~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~----~~~~----~~~~~l~~~~~i~~~-i~v~~~~~~~~ 117 (158)
.++.+|+++.++.. ....++....+.++..+.+.... . .... +.+.++..++.+.+. ...++++++++
T Consensus 232 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (328)
T cd08268 232 ALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLD-EITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVE 310 (328)
T ss_pred hhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecc-cccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHH
Confidence 34567888877654 22223333234556666665433 2 2222 333444556666653 47799999999
Q ss_pred HHHHHHcCCcceeEEEE
Q 040822 118 ALERLENRDVKYRFVID 134 (158)
Q Consensus 118 a~~~~~~~~~~~k~vl~ 134 (158)
+++.+..+...+|.+++
T Consensus 311 ~~~~~~~~~~~~~vv~~ 327 (328)
T cd08268 311 AHRYLESGQQIGKIVVT 327 (328)
T ss_pred HHHHHHcCCCCceEEEe
Confidence 99998877666677653
No 202
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=86.84 E-value=0.87 Score=28.40 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=27.4
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV 41 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~ 41 (158)
+.|-.++|+|.=-|+..+-.++||+|+...+.
T Consensus 60 I~G~~GSg~I~lNGAAArl~~~GD~VII~sy~ 91 (126)
T TIGR00223 60 IAGKRGSRIICVNGAAARCVSVGDIVIIASYV 91 (126)
T ss_pred EEcCCCCCEEEeCCHHHhcCCCCCEEEEEECC
Confidence 67888999999999988899999999776543
No 203
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=86.40 E-value=5.2 Score=29.31 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCcccc-eEEEe--cccHHHHHHHHHcCC-cceeEEEE
Q 040822 89 QETKEMVEFCAENGIYPE-IEIIP--IQYVNGALERLENRD-VKYRFVID 134 (158)
Q Consensus 89 ~~~~~~~~l~~~~~i~~~-i~v~~--~~~~~~a~~~~~~~~-~~~k~vl~ 134 (158)
..++++.+++.++.+.+. ...++ +++++++++.+..+. ..+|.+++
T Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~ 338 (339)
T cd08249 289 VFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVR 338 (339)
T ss_pred HHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEe
Confidence 345678888889988763 35677 999999999998887 77788764
No 204
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=86.39 E-value=2 Score=31.34 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=62.2
Q ss_pred cccCCEEEEEcCC------Cceee-eehhhhhccceeEEeeecCCH-----HHHHHHHHHHHhCCcccce-EEEecccHH
Q 040822 50 ASIAGVYVIVEVP------KEVKF-KTVNLIMEMRTIAGSIVGGGT-----QETKEMVEFCAENGIYPEI-EIIPIQYVN 116 (158)
Q Consensus 50 ~~~~g~~v~~g~~------~~~~~-~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~l~~~~~i~~~i-~v~~~~~~~ 116 (158)
++..||+++.|.- .+..+ +....+.+++++.+.... .. +-+..+..+.++++|+..- -...++..+
T Consensus 243 M~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~-d~~d~~~k~ld~l~~~ikegKI~y~edi~~Glen~P 321 (343)
T KOG1196|consen 243 MNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVS-DYLDKYPKFLDFLLPYIKEGKITYVEDIADGLENGP 321 (343)
T ss_pred hhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEee-chhhhhHHHHHHHHHHHhcCceEEehhHHHHHhccH
Confidence 6778999998854 12122 445677889999998765 32 2246777889999998532 235688899
Q ss_pred HHHHHHHcCCcceeEEEEeC
Q 040822 117 GALERLENRDVKYRFVIDIG 136 (158)
Q Consensus 117 ~a~~~~~~~~~~~k~vl~~~ 136 (158)
+|+.-+..++..||.++.+.
T Consensus 322 ~A~vglf~GkNvGKqiv~va 341 (343)
T KOG1196|consen 322 SALVGLFHGKNVGKQLVKVA 341 (343)
T ss_pred HHHHHHhccCcccceEEEee
Confidence 99999999999999887654
No 205
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=85.93 E-value=0.39 Score=29.50 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=23.8
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCC
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPY 40 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~ 40 (158)
+.|-.++|+|.=-|+..+.+++||+|+...+
T Consensus 60 I~g~~GSg~I~lNGaAArl~~~GD~vII~sy 90 (116)
T PF02261_consen 60 IPGERGSGVICLNGAAARLVQVGDRVIIMSY 90 (116)
T ss_dssp EEESTTTT-EEEEGGGGGCS-TT-EEEEEEE
T ss_pred EEccCCCcEEEECCHHHhccCCCCEEEEEEc
Confidence 6778889999999999999999999977654
No 206
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=85.87 E-value=0.33 Score=35.52 Aligned_cols=44 Identities=43% Similarity=0.625 Sum_probs=36.9
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
+|.++|||++|+|+++|++|+.|++||||++.+.. .|+.|..|+
T Consensus 54 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~c~~c~~c~ 97 (339)
T cd08239 54 QGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYV-GCGACRNCR 97 (339)
T ss_pred CCceeccCceEEEEEECCCCccCCCCCEEEECCCC-CCCCChhhh
Confidence 58999999999999999999999999999876554 566665553
No 207
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=85.81 E-value=3.8 Score=35.82 Aligned_cols=86 Identities=14% Similarity=0.235 Sum_probs=56.3
Q ss_pred cccCCEEEEEcCC---CceeeeehhhhhccceeEEeee-----cCCHHHHHHHHHHHHhC----Cccc-ceEEEecccHH
Q 040822 50 ASIAGVYVIVEVP---KEVKFKTVNLIMEMRTIAGSIV-----GGGTQETKEMVEFCAEN----GIYP-EIEIIPIQYVN 116 (158)
Q Consensus 50 ~~~~g~~v~~g~~---~~~~~~~~~~~~~~~~i~g~~~-----~~~~~~~~~~~~l~~~~----~i~~-~i~v~~~~~~~ 116 (158)
+..+||..-+|-- .+.++ .+..+.++.+..|... + ....+.++..|.++| -++| ..++|+-++++
T Consensus 1645 La~~GRFLEIGKfDLSqNspL-GMavfLkNvsfHGiLLDsvmeg-e~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE 1722 (2376)
T KOG1202|consen 1645 LALHGRFLEIGKFDLSQNSPL-GMAVFLKNVSFHGILLDSVMEG-EEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVE 1722 (2376)
T ss_pred HHhcCeeeeecceecccCCcc-hhhhhhcccceeeeehhhhhcC-cHHHHHHHHHHHHhhhccCceeccccccccHHHHH
Confidence 4457787777633 11111 2333445555555543 4 455566677776654 3344 45899999999
Q ss_pred HHHHHHHcCCcceeEEEEeCc
Q 040822 117 GALERLENRDVKYRFVIDIGQ 137 (158)
Q Consensus 117 ~a~~~~~~~~~~~k~vl~~~~ 137 (158)
+||+-+..++.+||+++.+..
T Consensus 1723 ~AFRfMasGKHIGKVvikvr~ 1743 (2376)
T KOG1202|consen 1723 DAFRFMASGKHIGKVVIKVRA 1743 (2376)
T ss_pred HHHHHHhccCccceEEEEEcc
Confidence 999999999999999987643
No 208
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=85.56 E-value=1 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=27.0
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV 41 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~ 41 (158)
++|-.++|+|.=-|+..+-.++||+|+...+.
T Consensus 60 I~g~~GSg~I~lNGAAAr~~~~GD~vII~ay~ 91 (126)
T PRK05449 60 IAGERGSGVICLNGAAARLVQVGDLVIIAAYA 91 (126)
T ss_pred EEcCCCCCEEEeCCHHHhcCCCCCEEEEEECc
Confidence 67888899999999888889999999766543
No 209
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=84.74 E-value=2 Score=31.53 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 89 QETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 89 ~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
...+.++++..++.+++. .+++++++++++++.++++...+|.+++
T Consensus 305 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~ 351 (352)
T cd08247 305 DWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIK 351 (352)
T ss_pred HHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence 346678888888888764 4789999999999999887777787754
No 210
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=84.65 E-value=1.4 Score=26.38 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=19.0
Q ss_pred cccccEEEEEeCCCCC---------CCCCCCEEEe
Q 040822 12 GHEIVGAVKEVGSNVK---------CFEVGDRVGV 37 (158)
Q Consensus 12 G~e~~G~V~~vG~~v~---------~~~vGdrV~~ 37 (158)
+-...|+|+++|++-. ..++||||..
T Consensus 41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLl 75 (104)
T KOG1641|consen 41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLL 75 (104)
T ss_pred cccceEEEEEEcCccccCCCCCcCccccCCCEEEe
Confidence 3445699999998632 4789999953
No 211
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.52 E-value=0.35 Score=35.59 Aligned_cols=42 Identities=48% Similarity=0.797 Sum_probs=34.5
Q ss_pred CCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccc
Q 040822 7 IENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNF 49 (158)
Q Consensus 7 ~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~ 49 (158)
+|.++|+|++|+|+++|++|++|++||||++.... .|+.|.+
T Consensus 64 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~-~~~~~~~ 105 (351)
T cd08233 64 APVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTI-KCGTCGA 105 (351)
T ss_pred CCceecccceEEEEEeCCCCCCCCCCCEEEECCCC-CCCCChH
Confidence 68999999999999999999999999999875433 3444443
No 212
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.05 E-value=2.1 Score=31.83 Aligned_cols=42 Identities=48% Similarity=0.903 Sum_probs=35.3
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA 53 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~ 53 (158)
++|||++|+|+++| .++.|++||||++.+.. +|+.|.+|+.+
T Consensus 58 i~GHE~~G~V~evG-~~~~~~~GdrVvv~~~~-~Cg~C~~C~~G 99 (350)
T COG1063 58 ILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNI-PCGHCRYCRAG 99 (350)
T ss_pred ccCccceEEEEEec-cccCCCCCCEEEECCCc-CCCCChhHhCc
Confidence 99999999999999 77889999999877654 78877766543
No 213
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=81.56 E-value=1.9 Score=32.91 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=55.7
Q ss_pred cccccCCEEEEEcCCCceeeeehhhhhccceeEEeeecCCHH-HHH--HHHHHHHhCCc-cc---ceEE-----Eecc-c
Q 040822 48 NFASIAGVYVIVEVPKEVKFKTVNLIMEMRTIAGSIVGGGTQ-ETK--EMVEFCAENGI-YP---EIEI-----IPIQ-Y 114 (158)
Q Consensus 48 ~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-~~~--~~~~l~~~~~i-~~---~i~v-----~~~~-~ 114 (158)
..+++++.++.+|.. +.+++...+..++.++.++... ... .++ ..+.++.+|.+ +. ..+. ++++ +
T Consensus 277 ~~mk~GgilvnvG~~-~~eId~~~L~~~el~i~g~~~~-~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q 354 (413)
T cd00401 277 EQMKDGAIVCNIGHF-DVEIDVKGLKENAVEVVNIKPQ-VDRYELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQ 354 (413)
T ss_pred hcCCCCcEEEEeCCC-CCccCHHHHHhhccEEEEccCC-cceEEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHH
Confidence 356778888888865 4567777788888888888766 432 334 68999999987 42 2244 7888 8
Q ss_pred HHHHHHHHHcCC
Q 040822 115 VNGALERLENRD 126 (158)
Q Consensus 115 ~~~a~~~~~~~~ 126 (158)
+.++++.+.+..
T Consensus 355 ~l~a~~l~~~~~ 366 (413)
T cd00401 355 VLAQIELWTNRD 366 (413)
T ss_pred HHHHHHHHhcCC
Confidence 889999887764
No 214
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=81.31 E-value=0.73 Score=34.04 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=42.2
Q ss_pred CCCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822 3 SESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA 53 (158)
Q Consensus 3 ~~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~ 53 (158)
.|.+||.++|||++|+|++||++|+.+|+||+|+.... +.|+.|..|..+
T Consensus 51 ~p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~-p~CG~C~~C~sG 100 (366)
T COG1062 51 DPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFT-PECGQCKFCLSG 100 (366)
T ss_pred CCCCCceecccccccEEEEecCCccccCCCCEEEEccc-CCCCCCchhhCC
Confidence 45669999999999999999999999999999976543 478888876544
No 215
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=80.92 E-value=0.44 Score=35.23 Aligned_cols=33 Identities=30% Similarity=0.236 Sum_probs=29.4
Q ss_pred CCCccccc--cccEEEEEeCCCCCCCCCCCEEEec
Q 040822 6 LIENCMGH--EIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 6 ~~p~~~G~--e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
.+|+++|+ |++|+|.++|++|++|++||||++.
T Consensus 71 ~~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~ 105 (348)
T PLN03154 71 LPPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI 105 (348)
T ss_pred CCCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec
Confidence 35889997 8899999999999999999999754
No 216
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=80.85 E-value=13 Score=27.04 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCcccce-EEE---ecccHHHHHHHHHcCCcceeEEE
Q 040822 90 ETKEMVEFCAENGIYPEI-EII---PIQYVNGALERLENRDVKYRFVI 133 (158)
Q Consensus 90 ~~~~~~~l~~~~~i~~~i-~v~---~~~~~~~a~~~~~~~~~~~k~vl 133 (158)
.+++++++..++.+++.+ ..+ ++++++++++.+..+...+|.++
T Consensus 286 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv 333 (336)
T TIGR02817 286 LLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVL 333 (336)
T ss_pred HHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEE
Confidence 356788888899887543 344 46889999999988877777764
No 217
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.96 E-value=0.7 Score=34.41 Aligned_cols=45 Identities=38% Similarity=0.547 Sum_probs=35.8
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~ 50 (158)
.++|.++|||++|+|+++|++|++|++||||++.... .|+.|.+|
T Consensus 59 ~~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~c~~c 103 (371)
T cd08281 59 RPLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVP-SCGHCRPC 103 (371)
T ss_pred CCCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCC-CCCCCccc
Confidence 4568999999999999999999999999999874332 35444443
No 218
>PLN02740 Alcohol dehydrogenase-like
Probab=78.24 E-value=1.6 Score=32.71 Aligned_cols=46 Identities=30% Similarity=0.506 Sum_probs=38.5
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
.++|.++|||++|+|+++|++|++|++||||++.... .|+.|.+|+
T Consensus 63 ~~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~-~cg~C~~c~ 108 (381)
T PLN02740 63 RAYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNG-ECGDCRYCK 108 (381)
T ss_pred CCCCccccccceEEEEEeCCCCCcCCCCCEEEecCCC-CCCCChhhc
Confidence 4579999999999999999999999999999876544 566666654
No 219
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.23 E-value=1 Score=33.14 Aligned_cols=43 Identities=28% Similarity=0.638 Sum_probs=35.3
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCcccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFA 50 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~ 50 (158)
++|.++|||++|+|+++|++|+.+ +||||++.+.. .|+.|.+|
T Consensus 52 ~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV~~~~~~-~cg~c~~c 94 (349)
T TIGR03201 52 ALPLALGHEISGRVIQAGAGAASW-IGKAVIVPAVI-PCGECELC 94 (349)
T ss_pred CCCeeccccceEEEEEeCCCcCCC-CCCEEEECCCC-CCCCChhh
Confidence 568999999999999999999887 99999876544 56666554
No 220
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.97 E-value=2.2 Score=31.32 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=36.9
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
.+|.++|||++|+|+++|++|++|++||||++.+.. .|+.|.+|.
T Consensus 52 ~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~-~c~~c~~c~ 96 (347)
T PRK10309 52 YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLL-PCFTCPECL 96 (347)
T ss_pred CCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCc-CCCCCcchh
Confidence 358899999999999999999999999999887544 455555444
No 221
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=75.36 E-value=1.3 Score=32.25 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=73.1
Q ss_pred CccccccccEEE-EEeC-CCCCCCCCCCEEEecCCccccccccccccCCE-EE--------------EEcCCCc---ee-
Q 040822 8 ENCMGHEIVGAV-KEVG-SNVKCFEVGDRVGVGPYVNSCQDCNFASIAGV-YV--------------IVEVPKE---VK- 66 (158)
Q Consensus 8 p~~~G~e~~G~V-~~vG-~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~-~v--------------~~g~~~~---~~- 66 (158)
|+-+|....|-+ -+|= |+..+|++||.|.....+ .+|....+. +. .+|+|.. ..
T Consensus 68 P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~GW-----q~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gL 142 (340)
T COG2130 68 PVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVSGW-----QEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGL 142 (340)
T ss_pred CcCCCceeECCeeEEEEecCCCCCCCCCEEEecccc-----eEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHH
Confidence 777888776643 3332 567899999999664322 222211111 00 1112200 00
Q ss_pred eeehhhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHc-----CCcceeEEEEeCcccc-
Q 040822 67 FKTVNLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLEN-----RDVKYRFVIDIGQHLE- 140 (158)
Q Consensus 67 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~-----~~~~~k~vl~~~~~~~- 140 (158)
++....-.++..++....| . ...-+.|+++..+.+++-. ..-++..+.+.+ ..+++|.. ++.+.+.
T Consensus 143 l~igqpk~GetvvVSaAaG-a--VGsvvgQiAKlkG~rVVGi----aGg~eK~~~l~~~lGfD~~idyk~~-d~~~~L~~ 214 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAG-A--VGSVVGQIAKLKGCRVVGI----AGGAEKCDFLTEELGFDAGIDYKAE-DFAQALKE 214 (340)
T ss_pred HHhcCCCCCCEEEEEeccc-c--cchHHHHHHHhhCCeEEEe----cCCHHHHHHHHHhcCCceeeecCcc-cHHHHHHH
Confidence 0111112245555555544 2 2356788888888875433 333334444433 23555654 6666666
Q ss_pred cCCccCcCccccCCCCC
Q 040822 141 LKPRVGPWSCMDKIPSR 157 (158)
Q Consensus 141 ~t~g~g~d~v~d~~~~~ 157 (158)
.+. +|+|+.||++||+
T Consensus 215 a~P-~GIDvyfeNVGg~ 230 (340)
T COG2130 215 ACP-KGIDVYFENVGGE 230 (340)
T ss_pred HCC-CCeEEEEEcCCch
Confidence 555 9999999999985
No 222
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=75.28 E-value=6.3 Score=28.79 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEE
Q 040822 88 TQETKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 88 ~~~~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
...+.++++++.++.+.+. .+.++++++.++++.+.++...++.+
T Consensus 303 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv 348 (350)
T cd08248 303 GSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTV 348 (350)
T ss_pred HHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEE
Confidence 4557888899999988754 47899999999999988766555654
No 223
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=74.61 E-value=3.7 Score=25.55 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=25.6
Q ss_pred cccccccEEEEEeCCCCCCCCCCCEEEecCCc
Q 040822 10 CMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYV 41 (158)
Q Consensus 10 ~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~ 41 (158)
+.|-.++|+|.=-|...+-.++||+|+...+.
T Consensus 59 I~g~rGSg~I~lNGAAArl~~~GD~VII~sy~ 90 (126)
T COG0853 59 IAGERGSGVICLNGAAARLVQVGDLVIIMSYA 90 (126)
T ss_pred EEccCCCcEEEechHHHhhCCCCCEEEEEEcc
Confidence 56777889999888777788999999766543
No 224
>PLN02827 Alcohol dehydrogenase-like
Probab=71.22 E-value=2.6 Score=31.55 Aligned_cols=45 Identities=33% Similarity=0.521 Sum_probs=37.4
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
.+|.++|||++|+|+++|++|++|++||||++.... .|+.|.+|+
T Consensus 62 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~-~cg~C~~C~ 106 (378)
T PLN02827 62 LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTG-ECGSCRHCI 106 (378)
T ss_pred CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCC-CCCCChhhh
Confidence 468899999999999999999999999999876543 566666554
No 225
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=70.36 E-value=12 Score=26.71 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCccc-ceEEEecccHHHHHHHHHcCCcceeEEEE
Q 040822 91 TKEMVEFCAENGIYP-EIEIIPIQYVNGALERLENRDVKYRFVID 134 (158)
Q Consensus 91 ~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~vl~ 134 (158)
+.+++++++++.+++ .++.++++++.++++.+......+|.+++
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~ 324 (325)
T cd08271 280 GEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVT 324 (325)
T ss_pred HHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEE
Confidence 356778888888875 34789999999999999877666677654
No 226
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=68.79 E-value=16 Score=26.86 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=92.3
Q ss_pred CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEc--CC----Cceeeeeh-------
Q 040822 4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVE--VP----KEVKFKTV------- 70 (158)
Q Consensus 4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g--~~----~~~~~~~~------- 70 (158)
.|++|++-|.|++|.|+++|+++++|++||+|+-...+.+.|..+.+.....++-+. +| ..++.++.
T Consensus 74 rP~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~ 153 (354)
T KOG0025|consen 74 RPELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLK 153 (354)
T ss_pred CCCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHH
Confidence 467899999999999999999999999999997665443344333333332333222 12 11222221
Q ss_pred ---hhhhccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEEeCcccc-------
Q 040822 71 ---NLIMEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVIDIGQHLE------- 140 (158)
Q Consensus 71 ---~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~------- 140 (158)
.+..+...+.- .+ +....+..+|+|+..+++.+--+..-+++++.-+.+++-++. .|++- ++++
T Consensus 154 dfv~L~~GD~vIQN--ga-nS~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~--~ViTe-eel~~~~~~k~ 227 (354)
T KOG0025|consen 154 DFVQLNKGDSVIQN--GA-NSGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGAT--EVITE-EELRDRKMKKF 227 (354)
T ss_pred HHHhcCCCCeeeec--Cc-ccHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCc--eEecH-HHhcchhhhhh
Confidence 11122222211 12 445678999999999999765667777788888878775543 23332 2222
Q ss_pred cCCccCcCccccCCCCC
Q 040822 141 LKPRVGPWSCMDKIPSR 157 (158)
Q Consensus 141 ~t~g~g~d~v~d~~~~~ 157 (158)
......+...+||+||.
T Consensus 228 ~~~~~~prLalNcVGGk 244 (354)
T KOG0025|consen 228 KGDNPRPRLALNCVGGK 244 (354)
T ss_pred hccCCCceEEEeccCch
Confidence 13456778899999985
No 227
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=68.56 E-value=2.7 Score=30.63 Aligned_cols=36 Identities=42% Similarity=0.534 Sum_probs=32.4
Q ss_pred CCCCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 4 ESLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 4 ~~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.++|.++|+|++|+|+++|++|.+|++||||++..
T Consensus 54 ~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 89 (340)
T cd05284 54 PYKLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHP 89 (340)
T ss_pred cCCCCeecccceeEEEEEeCCCCCcCcCCCEEEEcC
Confidence 456688999999999999999999999999998765
No 228
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=67.15 E-value=15 Score=27.03 Aligned_cols=44 Identities=20% Similarity=0.540 Sum_probs=35.6
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
.++|.++|||++|+|+++ +|++|++||||+..+.. .|+.|.+|+
T Consensus 57 ~~~p~v~GhE~~G~V~~v--~v~~~~vGdrV~~~~~~-~cg~c~~c~ 100 (343)
T PRK09880 57 IKAPMVLGHEVIGKIVHS--DSSGLKEGQTVAINPSK-PCGHCKYCL 100 (343)
T ss_pred ccCCcccCcccEEEEEEe--cCccCCCCCEEEECCCC-CCcCChhhc
Confidence 457999999999999999 78899999999876543 566665543
No 229
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=66.05 E-value=2.5 Score=30.90 Aligned_cols=33 Identities=45% Similarity=0.607 Sum_probs=29.8
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEec
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
+.|.++|+|++|+|+++|++++.|++||+|++.
T Consensus 55 ~~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~ 87 (341)
T cd08297 55 KLPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVK 87 (341)
T ss_pred CCCccCCcccceEEEEeCCCCCCCCCCCEEEEe
Confidence 446789999999999999999999999999875
No 230
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=65.69 E-value=1.8 Score=31.31 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=77.3
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccCCEEEEEcCCCceeeee------------hhh
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVPKEVKFKT------------VNL 72 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~------------~~~ 72 (158)
+++|.++|+|++|+|.++|+++.+|++||+|+++... .++.++++..... +..+|+.++... ..+
T Consensus 56 ~~~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~--g~~~~~~~v~~~~-~~~ip~~~~~~~a~~~~~~~~ta~~~l 132 (334)
T PTZ00354 56 PGSSEILGLEVAGYVEDVGSDVKRFKEGDRVMALLPG--GGYAEYAVAHKGH-VMHIPQGYTFEEAAAIPEAFLTAWQLL 132 (334)
T ss_pred CCCCcccceeeEEEEEEeCCCCCCCCCCCEEEEecCC--CceeeEEEecHHH-cEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999876321 2344555444221 223442221110 011
Q ss_pred h------hccceeEEeeecCCHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE------eCcccc
Q 040822 73 I------MEMRTIAGSIVGGGTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID------IGQHLE 140 (158)
Q Consensus 73 ~------~~~~~i~g~~~~~~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~------~~~~~~ 140 (158)
. .+...++... .-...+.++++++..+++.++...+. +..+.+.+... ..++. +.+.+.
T Consensus 133 ~~~~~~~~~~~vlI~ga---~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~~g~--~~~~~~~~~~~~~~~~~ 203 (334)
T PTZ00354 133 KKHGDVKKGQSVLIHAG---ASGVGTAAAQLAEKYGAATIITTSSE----EKVDFCKKLAA--IILIRYPDEEGFAPKVK 203 (334)
T ss_pred HHhcCCCCCCEEEEEcC---CchHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCC--cEEEecCChhHHHHHHH
Confidence 0 0112222211 22334678899998888754422222 22333332232 22222 223344
Q ss_pred -cCCccCcCccccCCCC
Q 040822 141 -LKPRVGPWSCMDKIPS 156 (158)
Q Consensus 141 -~t~g~g~d~v~d~~~~ 156 (158)
.++++++|.++|++++
T Consensus 204 ~~~~~~~~d~~i~~~~~ 220 (334)
T PTZ00354 204 KLTGEKGVNLVLDCVGG 220 (334)
T ss_pred HHhCCCCceEEEECCch
Confidence 6778899999998764
No 231
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=65.54 E-value=13 Score=26.22 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCccc-ceEEEecccHHHHHHHHHcCCcceeEE
Q 040822 91 TKEMVEFCAENGIYP-EIEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 91 ~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
+.++.++..++.+++ ..+.++++++.++++.+..+...+|.+
T Consensus 260 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 302 (303)
T cd08251 260 QAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVV 302 (303)
T ss_pred HHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEe
Confidence 456777888888775 347899999999999988776555554
No 232
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=61.38 E-value=17 Score=25.30 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCccc-ceEEEecccHHHHHHHHHcCCcceeEE
Q 040822 91 TKEMVEFCAENGIYP-EIEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 91 ~~~~~~l~~~~~i~~-~i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
+.+++++++++.+++ .+..++++++.++++.+..+...++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 287 (288)
T smart00829 245 LAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVV 287 (288)
T ss_pred HHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEe
Confidence 456777888887765 447799999999999988765545543
No 233
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=60.12 E-value=9.6 Score=28.31 Aligned_cols=46 Identities=30% Similarity=0.461 Sum_probs=37.1
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccc
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFAS 51 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~ 51 (158)
+++|.++|||++|+|+++|++|++|++||||++.... .|+.|.+|.
T Consensus 53 ~~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~-~c~~c~~c~ 98 (365)
T cd08277 53 TLFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIG-QCGECSNCR 98 (365)
T ss_pred CCCCeecccceeEEEEeeCCCCccCCCCCEEEECCCC-CCCCCchhc
Confidence 4578999999999999999999999999999875433 455555443
No 234
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=60.05 E-value=19 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCcccc-eEEEecccHHHHHHHHHcCCcceeEE
Q 040822 91 TKEMVEFCAENGIYPE-IEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 91 ~~~~~~l~~~~~i~~~-i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
+.+++++++++.+++. ...+++++..++++.+..+...+|.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~iv 292 (293)
T cd05195 250 LREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVV 292 (293)
T ss_pred HHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceec
Confidence 4667788888888754 35789999999999988776555553
No 235
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=59.13 E-value=3.2 Score=30.00 Aligned_cols=34 Identities=32% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCCccccccccEEEEEeCCCCCCCCCCCEEEecC
Q 040822 6 LIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGP 39 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~ 39 (158)
+.|.++|+|++|+|+++|+++++|++||+|++..
T Consensus 56 ~~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~ 89 (336)
T cd08276 56 KDPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTF 89 (336)
T ss_pred CCCcccccceeEEEEEeCCCCcCCCCCCEEEEec
Confidence 4678999999999999999999999999998764
No 236
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=58.39 E-value=18 Score=26.99 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCCCCCEEEecCCccccccccccccCCEEEEEcCC-Cceeeeehhhhh----ccceeEEee-ecCCHHHHHHHHHHHHhC
Q 040822 28 CFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFKTVNLIM----EMRTIAGSI-VGGGTQETKEMVEFCAEN 101 (158)
Q Consensus 28 ~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~-~~~~~~~~~~~~----~~~~i~g~~-~~~~~~~~~~~~~l~~~~ 101 (158)
+++.||.|++-+....+...-....+.+.+++.+. ....++...+-. +...+.... .| ...++.++.++|++.
T Consensus 61 ~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~~G-~~~d~~~i~~~~~~~ 139 (363)
T PF01041_consen 61 GLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHLFG-NPADMDAIRAIARKH 139 (363)
T ss_dssp TGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-GGG-B---HHHHHHHHHHT
T ss_pred CCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecCCC-CcccHHHHHHHHHHc
Confidence 57799999775543212122234556677887765 555555543322 223333333 34 567889999999998
Q ss_pred Cccc
Q 040822 102 GIYP 105 (158)
Q Consensus 102 ~i~~ 105 (158)
++..
T Consensus 140 ~i~l 143 (363)
T PF01041_consen 140 GIPL 143 (363)
T ss_dssp T-EE
T ss_pred CCcE
Confidence 8754
No 237
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=57.34 E-value=13 Score=28.06 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=55.5
Q ss_pred CCCCCCEEEecCCccccccccccccCCEEEEEcCC-Cceeeeehhhh----hccceeEEeeecCCHHHHHHHHHHHHhCC
Q 040822 28 CFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFKTVNLI----MEMRTIAGSIVGGGTQETKEMVEFCAENG 102 (158)
Q Consensus 28 ~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~-~~~~~~~~~~~----~~~~~i~g~~~~~~~~~~~~~~~l~~~~~ 102 (158)
.+.+||.|++.+..........+..+.+-+++.+. ....++...+- .+-+-++-....+...+++++.+++++.+
T Consensus 70 ~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~~ 149 (374)
T COG0399 70 AIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRHG 149 (374)
T ss_pred CCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHcC
Confidence 37899999776543222233445667788888765 44555544332 12233433333215667899999999999
Q ss_pred cccceEEEecccHHHHHHHHHcCC
Q 040822 103 IYPEIEIIPIQYVNGALERLENRD 126 (158)
Q Consensus 103 i~~~i~v~~~~~~~~a~~~~~~~~ 126 (158)
+.++ +|..+++...-+++
T Consensus 150 l~vI------EDaAqa~Ga~y~gk 167 (374)
T COG0399 150 LPVI------EDAAQAHGATYKGK 167 (374)
T ss_pred CeEE------EEcchhccCeecCc
Confidence 8653 66666666544444
No 238
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=53.70 E-value=9.7 Score=22.83 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=11.1
Q ss_pred CCCCCCEEEecCC
Q 040822 28 CFEVGDRVGVGPY 40 (158)
Q Consensus 28 ~~~vGdrV~~~~~ 40 (158)
.+++||+|++++.
T Consensus 76 ~Lk~GD~V~ll~~ 88 (100)
T PF10844_consen 76 GLKVGDKVLLLRV 88 (100)
T ss_pred CCcCCCEEEEEEe
Confidence 6999999988763
No 239
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=46.91 E-value=24 Score=19.56 Aligned_cols=26 Identities=35% Similarity=0.365 Sum_probs=14.5
Q ss_pred cccEEEEEeC-CCCCCCCCCCEEEecC
Q 040822 14 EIVGAVKEVG-SNVKCFEVGDRVGVGP 39 (158)
Q Consensus 14 e~~G~V~~vG-~~v~~~~vGdrV~~~~ 39 (158)
|..|...++- .-+.+.++||.|.+..
T Consensus 22 ~~~G~~~~V~~~lv~~v~~Gd~VLVHa 48 (68)
T PF01455_consen 22 DFGGVRREVSLALVPDVKVGDYVLVHA 48 (68)
T ss_dssp EETTEEEEEEGTTCTSB-TT-EEEEET
T ss_pred EcCCcEEEEEEEEeCCCCCCCEEEEec
Confidence 4445555554 3356688899887654
No 240
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=43.70 E-value=68 Score=22.73 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCccc-ce---EEEecccHHHHHHHH
Q 040822 92 KEMVEFCAENGIYP-EI---EIIPIQYVNGALERL 122 (158)
Q Consensus 92 ~~~~~l~~~~~i~~-~i---~v~~~~~~~~a~~~~ 122 (158)
+++.+++++.+... .+ ..+++++..++++.+
T Consensus 212 ~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~ 246 (272)
T PRK11873 212 EEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDW 246 (272)
T ss_pred HHHHHHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence 55667777766543 12 457888888888877
No 241
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.22 E-value=73 Score=21.92 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=31.7
Q ss_pred ccccCCEEEEEcCC-Cceee-eehhhhhccceeEEeeecCCHHHHHHHHHH
Q 040822 49 FASIAGVYVIVEVP-KEVKF-KTVNLIMEMRTIAGSIVGGGTQETKEMVEF 97 (158)
Q Consensus 49 ~~~~~g~~v~~g~~-~~~~~-~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l 97 (158)
.++.+|+++.++.. ..... .....+.++.++.++..+ ....+++++++
T Consensus 221 ~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 270 (271)
T cd05188 221 LLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGG-TREDFEEALDL 270 (271)
T ss_pred hcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecC-CHHHHHHHHhh
Confidence 45678888888755 22222 234456678888888877 77777777665
No 242
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=38.74 E-value=96 Score=22.35 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEE
Q 040822 87 GTQETKEMVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFV 132 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~v 132 (158)
+.....+..+.+++.++.|-+.+|....+..+....+++.......
T Consensus 124 ~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~~G~l~~p~~ 169 (272)
T PF05853_consen 124 TPADARELARRMRERGIKPEIEVFDPGHLRNARRLIEKGLLPGPLL 169 (272)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHCCCCCCCeE
Confidence 4667789999999999999999999999988888777766544433
No 243
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=36.97 E-value=16 Score=27.27 Aligned_cols=49 Identities=47% Similarity=0.765 Sum_probs=41.0
Q ss_pred CCCCccccccccEEEEEeCCCCCCCCCCCEEEecCCccccccccccccC
Q 040822 5 SLIENCMGHEIVGAVKEVGSNVKCFEVGDRVGVGPYVNSCQDCNFASIA 53 (158)
Q Consensus 5 ~~~p~~~G~e~~G~V~~vG~~v~~~~vGdrV~~~~~~~~~~~~~~~~~~ 53 (158)
+++|.++|||.+|+|+++|++|++||+||||.+-....+|+.|++|+.+
T Consensus 55 ~~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G 103 (339)
T COG1064 55 PKLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSG 103 (339)
T ss_pred CCCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCc
Confidence 4589999999999999999999999999999772223378888887653
No 244
>PF15584 Imm44: Immunity protein 44
Probab=36.64 E-value=32 Score=20.38 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=21.0
Q ss_pred CCCCCCccccccccEEEEEeCCCCC
Q 040822 3 SESLIENCMGHEIVGAVKEVGSNVK 27 (158)
Q Consensus 3 ~~~~~p~~~G~e~~G~V~~vG~~v~ 27 (158)
+|.++|.++--+..+.+++.|..|.
T Consensus 2 fP~~lP~vP~~~~~~~~I~SG~~iP 26 (94)
T PF15584_consen 2 FPAPLPEVPKNPSEGGVIKSGQEIP 26 (94)
T ss_pred CCCccCcCCCCCCCCCEEecCCCcc
Confidence 6788888887789999999998764
No 245
>PF14444 S1-like: S1-like
Probab=36.60 E-value=23 Score=19.02 Aligned_cols=11 Identities=55% Similarity=0.567 Sum_probs=8.7
Q ss_pred CCCCCEEEecC
Q 040822 29 FEVGDRVGVGP 39 (158)
Q Consensus 29 ~~vGdrV~~~~ 39 (158)
-++||||.+.+
T Consensus 34 P~vGdrV~v~A 44 (58)
T PF14444_consen 34 PKVGDRVLVEA 44 (58)
T ss_pred CccCCEEEEEE
Confidence 38999997754
No 246
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=35.33 E-value=24 Score=26.30 Aligned_cols=17 Identities=24% Similarity=-0.050 Sum_probs=13.0
Q ss_pred CCCCCCCCCEEEecCCc
Q 040822 25 NVKCFEVGDRVGVGPYV 41 (158)
Q Consensus 25 ~v~~~~vGdrV~~~~~~ 41 (158)
+|.++|+||+|.+....
T Consensus 312 sVt~Lk~GD~VL~~~~~ 328 (344)
T PRK02290 312 SVVDLKPGDEVLGYLEE 328 (344)
T ss_pred eeeecCCCCEEEEEecC
Confidence 46789999999876543
No 247
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=34.16 E-value=33 Score=19.75 Aligned_cols=14 Identities=29% Similarity=0.121 Sum_probs=10.9
Q ss_pred CCCCCCEEEecCCc
Q 040822 28 CFEVGDRVGVGPYV 41 (158)
Q Consensus 28 ~~~vGdrV~~~~~~ 41 (158)
.|++||.|++-..+
T Consensus 2 ~f~~GdlVwaK~kG 15 (83)
T cd05834 2 QFKAGDLVFAKVKG 15 (83)
T ss_pred CCCCCCEEEEecCC
Confidence 58999999876443
No 248
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=33.99 E-value=21 Score=18.82 Aligned_cols=10 Identities=50% Similarity=0.820 Sum_probs=5.1
Q ss_pred CCCCCCEEEe
Q 040822 28 CFEVGDRVGV 37 (158)
Q Consensus 28 ~~~vGdrV~~ 37 (158)
.|++||||-.
T Consensus 5 pf~~GdrVQl 14 (54)
T PF14801_consen 5 PFRAGDRVQL 14 (54)
T ss_dssp S--TT-EEEE
T ss_pred CCCCCCEEEE
Confidence 3899999943
No 249
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=33.29 E-value=99 Score=23.33 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=39.2
Q ss_pred CCCCCCEEEecCCccccccccccccCCEEEEEcCC-Cceeeeehhh---hhcc-ceeEEe-eecCCHHHHHHHHHHHHhC
Q 040822 28 CFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFKTVNL---IMEM-RTIAGS-IVGGGTQETKEMVEFCAEN 101 (158)
Q Consensus 28 ~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~-~~~~~~~~~~---~~~~-~~i~g~-~~~~~~~~~~~~~~l~~~~ 101 (158)
.+++||.|++...............+.+.+.+... ....++...+ +... ..+.-. ..| ...++.++.+++++.
T Consensus 67 ~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip~~~~G-~~~d~~~I~~la~~~ 145 (376)
T TIGR02379 67 DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITHRTKAIVPVHYAG-VACDMDTIMALANKH 145 (376)
T ss_pred CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEEeCCCC-CccCHHHHHHHHHHC
Confidence 36899999775433211111122345677776554 3233332222 1111 122222 224 556678899999988
Q ss_pred Ccccc
Q 040822 102 GIYPE 106 (158)
Q Consensus 102 ~i~~~ 106 (158)
++..+
T Consensus 146 ~i~vI 150 (376)
T TIGR02379 146 QLFVI 150 (376)
T ss_pred CCEEE
Confidence 87543
No 250
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=32.56 E-value=41 Score=19.84 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=9.4
Q ss_pred CCCCCCCEEEecCCc
Q 040822 27 KCFEVGDRVGVGPYV 41 (158)
Q Consensus 27 ~~~~vGdrV~~~~~~ 41 (158)
..+++||+|...+..
T Consensus 65 ~~~~vGd~v~iiP~H 79 (94)
T PF14031_consen 65 DRLKVGDKVEIIPNH 79 (94)
T ss_dssp CGT-TT-EEEEEESS
T ss_pred CCCCCCCEEEEECCc
Confidence 359999999776643
No 251
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=31.94 E-value=51 Score=18.74 Aligned_cols=13 Identities=38% Similarity=0.240 Sum_probs=8.6
Q ss_pred CCCCCCCEEEecC
Q 040822 27 KCFEVGDRVGVGP 39 (158)
Q Consensus 27 ~~~~vGdrV~~~~ 39 (158)
...++||.|.+..
T Consensus 34 ~~~~vGD~VLVH~ 46 (76)
T TIGR00074 34 GEVKVGDYVLVHV 46 (76)
T ss_pred CCCCCCCEEEEec
Confidence 4577888876543
No 252
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=30.50 E-value=37 Score=20.08 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=9.2
Q ss_pred CCCCCEEEecCC
Q 040822 29 FEVGDRVGVGPY 40 (158)
Q Consensus 29 ~~vGdrV~~~~~ 40 (158)
|++||.|++-..
T Consensus 1 f~~GDlVwaK~~ 12 (93)
T cd05840 1 FQPGDRVLAKVK 12 (93)
T ss_pred CCCCCEEEEeCC
Confidence 689999987543
No 253
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=30.45 E-value=44 Score=18.81 Aligned_cols=15 Identities=33% Similarity=0.131 Sum_probs=12.1
Q ss_pred CCCCCCCEEEecCCc
Q 040822 27 KCFEVGDRVGVGPYV 41 (158)
Q Consensus 27 ~~~~vGdrV~~~~~~ 41 (158)
+.+++||.|+++...
T Consensus 4 ~~~~~GD~VyViYrN 18 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRN 18 (75)
T ss_pred cccCCCCEEEEEEcC
Confidence 568999999887654
No 254
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=29.91 E-value=36 Score=22.54 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=9.3
Q ss_pred CCCCCCEEEecCC
Q 040822 28 CFEVGDRVGVGPY 40 (158)
Q Consensus 28 ~~~vGdrV~~~~~ 40 (158)
.|++||+| ++|.
T Consensus 4 ~Fk~Gd~V-VYP~ 15 (166)
T COG1329 4 AFKIGDHV-VYPA 15 (166)
T ss_pred cccCCCEE-EecC
Confidence 59999999 4554
No 255
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=28.87 E-value=67 Score=22.08 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=16.5
Q ss_pred EEEEEeCCC-------------------CCCCCCCCEEEecC
Q 040822 17 GAVKEVGSN-------------------VKCFEVGDRVGVGP 39 (158)
Q Consensus 17 G~V~~vG~~-------------------v~~~~vGdrV~~~~ 39 (158)
|+|++|..+ -+++|+||.|=+..
T Consensus 44 GrVvEV~~~~i~iesk~yn~~v~i~~d~~~nvKVGD~VKaTG 85 (213)
T PRK06763 44 GRVVEVDNGVIVIKSKQYEEPVSVYIDSLSNVKVGDEVKATG 85 (213)
T ss_pred eEEEEEeCCEEEEEeccCCCceEEEecCCCCcccCcEEEEch
Confidence 788888765 24578999996543
No 256
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=28.71 E-value=53 Score=13.82 Aligned_cols=11 Identities=64% Similarity=0.809 Sum_probs=8.1
Q ss_pred CCCCCEEEecC
Q 040822 29 FEVGDRVGVGP 39 (158)
Q Consensus 29 ~~vGdrV~~~~ 39 (158)
|++||+|....
T Consensus 2 ~~~G~~V~I~~ 12 (28)
T smart00739 2 FEVGDTVRVIA 12 (28)
T ss_pred CCCCCEEEEeE
Confidence 67899986643
No 257
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=27.60 E-value=32 Score=21.49 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=40.6
Q ss_pred HHHHHHhCCcccceEEEecccHHHHHHHHHcCCcceeEEEE------eCcccc-cCCccCcCccccCCCCC
Q 040822 94 MVEFCAENGIYPEIEIIPIQYVNGALERLENRDVKYRFVID------IGQHLE-LKPRVGPWSCMDKIPSR 157 (158)
Q Consensus 94 ~~~l~~~~~i~~~i~v~~~~~~~~a~~~~~~~~~~~k~vl~------~~~~~~-~t~g~g~d~v~d~~~~~ 157 (158)
+-++..+|+.+...++-+.+++.+.++.++.-+.....+-+ ...++. +.-|.+.+-++|.+.|+
T Consensus 48 ~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~~~~i~DaG~TqippGt~T~L~iGP~~~~~iD~iTG~ 118 (122)
T COG1990 48 LDEWLREGQKKIVLKVGSLDELLELHQKAESLGLPTALIRDAGRTQIPPGTITVLGIGPAPEEVIDKITGD 118 (122)
T ss_pred HHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCChHHHHHhcCccccCCCCeEEEEECCCchhhhcccccc
Confidence 34567777777777888888888888887766532222111 223344 55566778888877664
No 258
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=27.21 E-value=1.8e+02 Score=18.93 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhCCcccceEEE---------------ecccHHHHHHHHHcCCcceeEEEEeCcccc
Q 040822 87 GTQETKEMVEFCAENGIYPEIEII---------------PIQYVNGALERLENRDVKYRFVIDIGQHLE 140 (158)
Q Consensus 87 ~~~~~~~~~~l~~~~~i~~~i~v~---------------~~~~~~~a~~~~~~~~~~~k~vl~~~~~~~ 140 (158)
...-+..+.+.+++.++.+.+-.| .+...++..+.++..++++-.++.+.+++.
T Consensus 21 Hq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~~F~~~~~ 89 (157)
T PF06574_consen 21 HQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVIPFTEEFA 89 (157)
T ss_dssp HHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE-CCCHHC
T ss_pred HHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEecchHHHH
Confidence 445566777777777765432111 144466777777777766656666665544
No 259
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=26.75 E-value=1.3e+02 Score=18.69 Aligned_cols=14 Identities=21% Similarity=0.069 Sum_probs=9.8
Q ss_pred ccccccEEEEEeCC
Q 040822 11 MGHEIVGAVKEVGS 24 (158)
Q Consensus 11 ~G~e~~G~V~~vG~ 24 (158)
..+..-|+|.++..
T Consensus 41 ~~~~~~G~V~~vd~ 54 (115)
T PRK09838 41 QVISGTGVVKGIDL 54 (115)
T ss_pred ceEEEEEEEEEEeC
Confidence 44677888888853
No 260
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=25.94 E-value=88 Score=23.20 Aligned_cols=22 Identities=27% Similarity=0.098 Sum_probs=16.7
Q ss_pred EEEEEeCCCCCCCCCCCEEEecCC
Q 040822 17 GAVKEVGSNVKCFEVGDRVGVGPY 40 (158)
Q Consensus 17 G~V~~vG~~v~~~~vGdrV~~~~~ 40 (158)
++|++ |.+.++.+|+||+.+.+
T Consensus 39 A~Vve--S~~~~i~vGerlyGy~P 60 (314)
T PF11017_consen 39 ATVVE--SRHPGIAVGERLYGYFP 60 (314)
T ss_pred EEEEe--eCCCCccCccEEEeecc
Confidence 34554 78899999999987654
No 261
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=25.73 E-value=79 Score=15.99 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=13.7
Q ss_pred ccccEEEEEeCCCC-CCCCCCCEEEe
Q 040822 13 HEIVGAVKEVGSNV-KCFEVGDRVGV 37 (158)
Q Consensus 13 ~e~~G~V~~vG~~v-~~~~vGdrV~~ 37 (158)
....|+|.++--.- ..++.||..+.
T Consensus 7 ~~~~G~V~~v~V~~G~~VkkGd~L~~ 32 (50)
T PF13533_consen 7 APVSGRVESVYVKEGQQVKKGDVLLV 32 (50)
T ss_pred CCCCEEEEEEEecCCCEEcCCCEEEE
Confidence 45678888763221 23555665544
No 262
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=25.47 E-value=1.7e+02 Score=21.92 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=37.0
Q ss_pred CCCCCEEEecCCcccccccc-ccccCCEEEEEcCC-Cceeeeehhh---hhcc-ceeEEe-eecCCHHHHHHHHHHHHhC
Q 040822 29 FEVGDRVGVGPYVNSCQDCN-FASIAGVYVIVEVP-KEVKFKTVNL---IMEM-RTIAGS-IVGGGTQETKEMVEFCAEN 101 (158)
Q Consensus 29 ~~vGdrV~~~~~~~~~~~~~-~~~~~g~~v~~g~~-~~~~~~~~~~---~~~~-~~i~g~-~~~~~~~~~~~~~~l~~~~ 101 (158)
+++||+|++...... .+.. ....+.+.+.+... ....++...+ +... ..+.-. ..| ...+++++.+++++.
T Consensus 68 ~~~Gd~Viv~~~t~~-~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~~~G-~~~~~~~i~~la~~~ 145 (375)
T PRK11706 68 IQPGDEVIMPSYTFV-STANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVHYAG-VACEMDTIMALAKKH 145 (375)
T ss_pred CCCCCEEEECCCCcH-HHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeCCCC-CccCHHHHHHHHHHc
Confidence 578999977543321 1122 22335566666543 2222222222 1111 122222 224 556678889999987
Q ss_pred Cccc
Q 040822 102 GIYP 105 (158)
Q Consensus 102 ~i~~ 105 (158)
++..
T Consensus 146 ~i~v 149 (375)
T PRK11706 146 NLFV 149 (375)
T ss_pred CCEE
Confidence 7654
No 263
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=25.27 E-value=44 Score=17.53 Aligned_cols=9 Identities=44% Similarity=0.918 Sum_probs=6.8
Q ss_pred CCCCCEEEe
Q 040822 29 FEVGDRVGV 37 (158)
Q Consensus 29 ~~vGdrV~~ 37 (158)
|++||.|-.
T Consensus 1 f~~GDvV~L 9 (53)
T PF09926_consen 1 FKIGDVVQL 9 (53)
T ss_pred CCCCCEEEE
Confidence 688999843
No 264
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=25.17 E-value=82 Score=19.70 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=10.0
Q ss_pred CCCCCCCEEEec
Q 040822 27 KCFEVGDRVGVG 38 (158)
Q Consensus 27 ~~~~vGdrV~~~ 38 (158)
..+++||.|++.
T Consensus 54 ~~L~~GD~VLA~ 65 (124)
T PF15057_consen 54 HSLQVGDKVLAP 65 (124)
T ss_pred CcCCCCCEEEEe
Confidence 459999999876
No 265
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=24.76 E-value=41 Score=17.54 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=7.5
Q ss_pred CCCCCEEEecC
Q 040822 29 FEVGDRVGVGP 39 (158)
Q Consensus 29 ~~vGdrV~~~~ 39 (158)
|++|++|.|..
T Consensus 1 ~~vG~~v~~~~ 11 (55)
T PF11717_consen 1 FEVGEKVLCKY 11 (55)
T ss_dssp --TTEEEEEEE
T ss_pred CCcCCEEEEEE
Confidence 57899998865
No 266
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.36 E-value=1.4e+02 Score=20.57 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCcccce-EEEecccHHHHHHHHHcCCcceeEEEE---------eCcccc-cCCccCcCccc
Q 040822 89 QETKEMVEFCAENGIYPEI-EIIPIQYVNGALERLENRDVKYRFVID---------IGQHLE-LKPRVGPWSCM 151 (158)
Q Consensus 89 ~~~~~~~~l~~~~~i~~~i-~v~~~~~~~~a~~~~~~~~~~~k~vl~---------~~~~~~-~t~g~g~d~v~ 151 (158)
..++.+++.++.+.++..+ .+++-..-..+++++++.++.... ++ +..++. .....++|+|+
T Consensus 12 SNlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~-~~~k~~~~r~~~d~~l~~~l~~~~~dlvv 84 (200)
T COG0299 12 SNLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVV-LDRKEFPSREAFDRALVEALDEYGPDLVV 84 (200)
T ss_pred ccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEE-eccccCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4467778888877665433 455544344556666666654322 22 222333 45556677665
No 267
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.23 E-value=52 Score=24.76 Aligned_cols=15 Identities=33% Similarity=0.158 Sum_probs=11.9
Q ss_pred CCCCCCCCEEEecCC
Q 040822 26 VKCFEVGDRVGVGPY 40 (158)
Q Consensus 26 v~~~~vGdrV~~~~~ 40 (158)
|..+|+||+|.+...
T Consensus 323 Vt~Lk~GD~vL~~~~ 337 (354)
T PF01959_consen 323 VTELKPGDEVLVYLE 337 (354)
T ss_pred eeecCCCCEEEEEec
Confidence 578999999977543
No 268
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=24.22 E-value=70 Score=19.01 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=22.5
Q ss_pred CCCCCCCEEEecCCccccccccccccCCEEEEEcCC
Q 040822 27 KCFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP 62 (158)
Q Consensus 27 ~~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~ 62 (158)
..+..||.|+...+.+ -.++.|..++++..+.++
T Consensus 30 ~~i~~GD~ViGtLPvh--LaA~vc~kGa~y~~L~l~ 63 (93)
T PF09652_consen 30 ADIQPGDVVIGTLPVH--LAAEVCEKGARYYHLSLD 63 (93)
T ss_pred HHccCCCEEEEeCcHH--HHHHHHhCCcEEEEEEcc
Confidence 3578899998765442 345667777777765443
No 269
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=23.99 E-value=83 Score=17.21 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=14.7
Q ss_pred CCCCCCCEEEecC---Cc--cccccccccccCCEEEEE
Q 040822 27 KCFEVGDRVGVGP---YV--NSCQDCNFASIAGVYVIV 59 (158)
Q Consensus 27 ~~~~vGdrV~~~~---~~--~~~~~~~~~~~~g~~v~~ 59 (158)
..|.-||||--.. +. ..+++|..+.+.|-.+-.
T Consensus 22 atf~~gdrvrkksgaawqg~vvgwy~t~ltpegyaves 59 (78)
T PF06442_consen 22 ATFGMGDRVRKKSGAAWQGQVVGWYCTKLTPEGYAVES 59 (78)
T ss_dssp -SS-TT-EEEESSSS--EEEEEEEE--SS-SSEEEEEE
T ss_pred cccccchhhhhcccccccceEeEEEeccccccceeeec
Confidence 4689999993221 11 134677777777654443
No 270
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=23.77 E-value=57 Score=18.90 Aligned_cols=12 Identities=42% Similarity=0.299 Sum_probs=9.3
Q ss_pred CCCCCEEEecCC
Q 040822 29 FEVGDRVGVGPY 40 (158)
Q Consensus 29 ~~vGdrV~~~~~ 40 (158)
|.+||.|++-..
T Consensus 1 f~vGDlVWaK~k 12 (87)
T cd05835 1 FNVGDLVWGKIK 12 (87)
T ss_pred CCCCCEEEEecC
Confidence 689999987543
No 271
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=23.75 E-value=59 Score=17.41 Aligned_cols=12 Identities=33% Similarity=0.263 Sum_probs=8.9
Q ss_pred CCCCCEEEecCC
Q 040822 29 FEVGDRVGVGPY 40 (158)
Q Consensus 29 ~~vGdrV~~~~~ 40 (158)
|++||.|++-..
T Consensus 1 f~~GdlVwaK~~ 12 (63)
T smart00293 1 FKPGDLVWAKMK 12 (63)
T ss_pred CCCCCEEEEECC
Confidence 678999977543
No 272
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=23.53 E-value=55 Score=18.96 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=9.9
Q ss_pred CCCCCCCEEEecC
Q 040822 27 KCFEVGDRVGVGP 39 (158)
Q Consensus 27 ~~~~vGdrV~~~~ 39 (158)
+++++||+|....
T Consensus 36 ~~L~~Gd~VvT~g 48 (84)
T TIGR00739 36 ESLKKGDKVLTIG 48 (84)
T ss_pred HhCCCCCEEEECC
Confidence 4689999996543
No 273
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=23.29 E-value=59 Score=18.84 Aligned_cols=12 Identities=25% Similarity=0.224 Sum_probs=9.4
Q ss_pred CCCCCEEEecCC
Q 040822 29 FEVGDRVGVGPY 40 (158)
Q Consensus 29 ~~vGdrV~~~~~ 40 (158)
|++||.|++-..
T Consensus 1 f~~GDlVwaK~~ 12 (86)
T cd05836 1 LKLGDLVWAKMK 12 (86)
T ss_pred CCCCCEEEEeCC
Confidence 689999987543
No 274
>PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=23.00 E-value=55 Score=19.07 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=6.6
Q ss_pred CCCCCEEEecCCc
Q 040822 29 FEVGDRVGVGPYV 41 (158)
Q Consensus 29 ~~vGdrV~~~~~~ 41 (158)
|++||+|+.....
T Consensus 1 ~~~gD~vv~~~n~ 13 (104)
T PF13538_consen 1 FRPGDKVVITRND 13 (104)
T ss_dssp --TT-EEEE-CTB
T ss_pred CcCcCEEEEEeeC
Confidence 6889999776543
No 275
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=22.60 E-value=32 Score=22.41 Aligned_cols=11 Identities=9% Similarity=-0.030 Sum_probs=9.9
Q ss_pred cCcCccccCCC
Q 040822 145 VGPWSCMDKIP 155 (158)
Q Consensus 145 ~g~d~v~d~~~ 155 (158)
.|+|+|+||.|
T Consensus 87 ~gvDiVvEcTG 97 (151)
T PF00044_consen 87 LGVDIVVECTG 97 (151)
T ss_dssp HTESEEEETSS
T ss_pred ccccEEEeccc
Confidence 68999999987
No 276
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=22.34 E-value=36 Score=22.05 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=10.0
Q ss_pred ccCcCccccCCC
Q 040822 144 RVGPWSCMDKIP 155 (158)
Q Consensus 144 g~g~d~v~d~~~ 155 (158)
..|+|+|+||.|
T Consensus 85 ~~gvDiVie~tG 96 (149)
T smart00846 85 ELGVDIVVECTG 96 (149)
T ss_pred ccCCeEEEeccc
Confidence 368999999965
No 277
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=21.88 E-value=59 Score=20.56 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=12.7
Q ss_pred CCCCCCCCEEEecCCc
Q 040822 26 VKCFEVGDRVGVGPYV 41 (158)
Q Consensus 26 v~~~~vGdrV~~~~~~ 41 (158)
+.+|++||-|+.++..
T Consensus 40 ~~~f~~GDlvLflpt~ 55 (129)
T PF10377_consen 40 FRNFQVGDLVLFLPTR 55 (129)
T ss_pred EecCCCCCEEEEEecC
Confidence 3689999999877654
No 278
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=1.4e+02 Score=18.89 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=14.0
Q ss_pred EEEEeCCCC---CCCCCCCEEEe
Q 040822 18 AVKEVGSNV---KCFEVGDRVGV 37 (158)
Q Consensus 18 ~V~~vG~~v---~~~~vGdrV~~ 37 (158)
-|.|+-.+. .++++||+|-.
T Consensus 97 yvLEl~~G~~~~~~i~vGd~v~~ 119 (126)
T COG1430 97 YVLELPAGWAARLGIKVGDRVEF 119 (126)
T ss_pred EEEEecCCchhhcCCccCCEEEe
Confidence 677776554 35899999844
No 279
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=21.47 E-value=50 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=7.9
Q ss_pred CCCCCCCCEEEecC
Q 040822 26 VKCFEVGDRVGVGP 39 (158)
Q Consensus 26 v~~~~vGdrV~~~~ 39 (158)
.+++++||||.+..
T Consensus 29 m~~L~iGD~Vla~d 42 (217)
T PF01079_consen 29 MSDLKIGDRVLAVD 42 (217)
T ss_dssp GGG--TT-EEEEE-
T ss_pred HHHCCCCCEEEEec
Confidence 36899999998754
No 280
>PF13403 Hint_2: Hint domain
Probab=21.37 E-value=58 Score=21.02 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=14.4
Q ss_pred EEEEEeCCC---CCCCCCCCEEEec
Q 040822 17 GAVKEVGSN---VKCFEVGDRVGVG 38 (158)
Q Consensus 17 G~V~~vG~~---v~~~~vGdrV~~~ 38 (158)
|+-++.-.+ |.++++||+|...
T Consensus 6 GT~I~T~~G~~~Ve~L~~GD~V~T~ 30 (147)
T PF13403_consen 6 GTLIETPDGPRPVEDLRPGDRVLTR 30 (147)
T ss_pred CCEEecCCcCeEeeccCCCCEEEec
Confidence 444444332 5789999999653
No 281
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=21.36 E-value=68 Score=16.87 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=7.5
Q ss_pred CCCCCCEEEecC
Q 040822 28 CFEVGDRVGVGP 39 (158)
Q Consensus 28 ~~~vGdrV~~~~ 39 (158)
++++||+|++..
T Consensus 46 ~L~~G~~V~~~i 57 (64)
T PF03459_consen 46 GLKPGDEVYASI 57 (64)
T ss_dssp T-STT-EEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 478999997654
No 282
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=21.17 E-value=1.7e+02 Score=16.52 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=12.6
Q ss_pred CCCccccccccEEEEEeCCC
Q 040822 6 LIENCMGHEIVGAVKEVGSN 25 (158)
Q Consensus 6 ~~p~~~G~e~~G~V~~vG~~ 25 (158)
..|.-.|-+.-=.|+++|++
T Consensus 10 ~~PVeeGe~y~V~I~d~g~~ 29 (73)
T COG3269 10 TPPVEEGETYEVEIEDVGDQ 29 (73)
T ss_pred CCCcccCCEEEEEEEEeccC
Confidence 34555666666677777764
No 283
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=21.10 E-value=1e+02 Score=19.17 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=12.5
Q ss_pred EEEEEeCCCCCCCCCCCEEEec
Q 040822 17 GAVKEVGSNVKCFEVGDRVGVG 38 (158)
Q Consensus 17 G~V~~vG~~v~~~~vGdrV~~~ 38 (158)
-+|+++|+.+..|.-...++.+
T Consensus 7 ~~I~~IG~~a~~~~~~~mlIlF 28 (117)
T PF03829_consen 7 TTITAIGEEAEDFLEENMLILF 28 (117)
T ss_dssp EEEEEE-TTT--TT-S-EEEEE
T ss_pred EEEEEhhhhHHhhhhCCeEEEE
Confidence 5899999999988766555443
No 284
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=20.98 E-value=83 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=22.1
Q ss_pred CCCCCCEEEecCCccccccccccccCCEEEEEcCC
Q 040822 28 CFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP 62 (158)
Q Consensus 28 ~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~ 62 (158)
....||+|+...+.. -.++.|..+.++..+.++
T Consensus 31 ~i~~GD~ViGtLPv~--Laa~vc~kGa~y~~l~l~ 63 (93)
T TIGR02620 31 DISQGDKVIGTLPVS--LAADICKKGARYFELSLN 63 (93)
T ss_pred HhcCCCEEEEeCCHH--HHHHHHhCCcEEEEEEcc
Confidence 478999998765442 345667777777666544
No 285
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=20.77 E-value=80 Score=16.80 Aligned_cols=11 Identities=45% Similarity=0.437 Sum_probs=8.5
Q ss_pred CCCCCCEEEec
Q 040822 28 CFEVGDRVGVG 38 (158)
Q Consensus 28 ~~~vGdrV~~~ 38 (158)
...+||+|...
T Consensus 37 ~~~VGD~V~~~ 47 (68)
T cd04466 37 PPAVGDRVEFE 47 (68)
T ss_pred CCCCCcEEEEE
Confidence 36899999764
No 286
>PF10077 DUF2314: Uncharacterized protein conserved in bacteria (DUF2314); InterPro: IPR018756 This domain of unkown function is found in various bacterial hypothetical proteins, as well as putative ankyrin repeat proteins.
Probab=20.68 E-value=1.5e+02 Score=18.83 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=16.8
Q ss_pred cccccEEEEEeCCCCCCCCCCCEEEe
Q 040822 12 GHEIVGAVKEVGSNVKCFEVGDRVGV 37 (158)
Q Consensus 12 G~e~~G~V~~vG~~v~~~~vGdrV~~ 37 (158)
|..+.|++.---..+++++.||+|..
T Consensus 63 g~~~~G~L~N~P~~i~~v~~Gd~v~~ 88 (133)
T PF10077_consen 63 GDTFSGVLDNEPYYITNVKEGDRVSF 88 (133)
T ss_pred CCEEEEEEecCCcccCCCCCCCEEEE
Confidence 34456666655556677888888744
No 287
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=20.60 E-value=71 Score=18.25 Aligned_cols=12 Identities=33% Similarity=0.240 Sum_probs=9.3
Q ss_pred CCCCCEEEecCC
Q 040822 29 FEVGDRVGVGPY 40 (158)
Q Consensus 29 ~~vGdrV~~~~~ 40 (158)
|++||.|++-..
T Consensus 1 f~~GdlVwaK~~ 12 (87)
T cd05162 1 FRPGDLVWAKMK 12 (87)
T ss_pred CCCCCEEEEeCC
Confidence 689999987543
No 288
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=20.35 E-value=80 Score=16.81 Aligned_cols=12 Identities=17% Similarity=0.017 Sum_probs=9.0
Q ss_pred CCCCCCEEEecC
Q 040822 28 CFEVGDRVGVGP 39 (158)
Q Consensus 28 ~~~vGdrV~~~~ 39 (158)
.+++||+|++..
T Consensus 48 ~l~~G~~v~~~i 59 (69)
T TIGR00638 48 GLKPGKEVYAVI 59 (69)
T ss_pred CCCCCCEEEEEE
Confidence 478999997643
No 289
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=20.22 E-value=4e+02 Score=20.71 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=37.8
Q ss_pred CCCCCCEEEecCCccccccccccccCCEEEEEcCC-Cceeeeehhh---hhccc-eeEEe-eecCCHHHHHHHHHHHHhC
Q 040822 28 CFEVGDRVGVGPYVNSCQDCNFASIAGVYVIVEVP-KEVKFKTVNL---IMEMR-TIAGS-IVGGGTQETKEMVEFCAEN 101 (158)
Q Consensus 28 ~~~vGdrV~~~~~~~~~~~~~~~~~~g~~v~~g~~-~~~~~~~~~~---~~~~~-~i~g~-~~~~~~~~~~~~~~l~~~~ 101 (158)
.+++||+|++...............+.+.+.+... ....++...+ +.... .++-. ..+ ....++++.+++++.
T Consensus 107 ~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~~G-~p~dl~~I~~la~~~ 185 (438)
T PRK15407 107 ALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHTLG-NPFDLAAVKAFCDKH 185 (438)
T ss_pred CCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCCCC-ChhhHHHHHHHHHHC
Confidence 46889999775433211111112234455555442 2222332222 21122 22222 234 666788889999988
Q ss_pred Cccc
Q 040822 102 GIYP 105 (158)
Q Consensus 102 ~i~~ 105 (158)
++..
T Consensus 186 gi~v 189 (438)
T PRK15407 186 NLWL 189 (438)
T ss_pred CCEE
Confidence 7643
No 290
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=20.05 E-value=1.4e+02 Score=22.14 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=12.2
Q ss_pred CCCCCCCCEEEecCCc
Q 040822 26 VKCFEVGDRVGVGPYV 41 (158)
Q Consensus 26 v~~~~vGdrV~~~~~~ 41 (158)
-..+++||+|...+..
T Consensus 303 ~~~~~vGd~v~~ip~H 318 (345)
T cd07376 303 LDDLPIGDRVFLVPNH 318 (345)
T ss_pred cCCCCCCCEEEEeCCc
Confidence 3558999999877654
Done!