Query 040824
Match_columns 154
No_of_seqs 175 out of 1804
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:11:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 5.8E-23 1.3E-27 129.1 10.3 97 56-152 7-103 (103)
2 cd01793 Fubi Fubi ubiquitin-li 99.8 7.5E-21 1.6E-25 113.2 8.2 74 77-152 1-74 (74)
3 PTZ00044 ubiquitin; Provisiona 99.8 1.5E-20 3.3E-25 112.5 8.5 76 77-152 1-76 (76)
4 cd01806 Nedd8 Nebb8-like ubiq 99.8 4.7E-20 1E-24 110.4 8.7 76 77-152 1-76 (76)
5 cd01803 Ubiquitin Ubiquitin. U 99.8 4.4E-20 9.5E-25 110.5 8.4 76 77-152 1-76 (76)
6 cd01810 ISG15_repeat2 ISG15 ub 99.8 4.6E-20 9.9E-25 109.8 8.1 74 79-152 1-74 (74)
7 cd01807 GDX_N ubiquitin-like d 99.8 3.4E-20 7.3E-25 110.4 7.5 73 1-73 1-73 (74)
8 cd01804 midnolin_N Ubiquitin-l 99.8 6.8E-20 1.5E-24 110.0 8.5 76 76-152 1-76 (78)
9 cd01807 GDX_N ubiquitin-like d 99.8 5.4E-20 1.2E-24 109.5 8.0 73 77-149 1-73 (74)
10 PTZ00044 ubiquitin; Provisiona 99.8 2.6E-19 5.7E-24 107.1 8.1 75 1-75 1-75 (76)
11 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 4.1E-19 8.9E-24 104.9 7.7 71 77-147 2-72 (73)
12 cd01793 Fubi Fubi ubiquitin-li 99.8 3.9E-19 8.4E-24 105.8 7.6 73 1-75 1-73 (74)
13 cd01797 NIRF_N amino-terminal 99.8 5.3E-19 1.2E-23 105.9 7.8 73 77-149 1-75 (78)
14 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 3.2E-19 6.9E-24 105.4 6.5 70 1-70 2-71 (73)
15 cd01797 NIRF_N amino-terminal 99.8 4.7E-19 1E-23 106.2 7.3 74 1-74 1-76 (78)
16 cd01794 DC_UbP_C dendritic cel 99.8 5.1E-19 1.1E-23 103.9 7.2 69 80-148 2-70 (70)
17 cd01806 Nedd8 Nebb8-like ubiq 99.8 9.7E-19 2.1E-23 104.6 8.4 75 1-75 1-75 (76)
18 cd01802 AN1_N ubiquitin-like d 99.8 1E-18 2.3E-23 109.8 7.8 75 1-75 28-102 (103)
19 cd01803 Ubiquitin Ubiquitin. U 99.8 1.4E-18 3E-23 104.0 8.0 75 1-75 1-75 (76)
20 cd01805 RAD23_N Ubiquitin-like 99.8 2.5E-18 5.4E-23 103.2 8.6 74 77-150 1-76 (77)
21 cd01800 SF3a120_C Ubiquitin-li 99.8 1.6E-18 3.5E-23 103.6 7.4 70 84-153 5-74 (76)
22 cd01804 midnolin_N Ubiquitin-l 99.8 1.4E-18 3E-23 104.3 7.1 75 1-76 2-76 (78)
23 cd01805 RAD23_N Ubiquitin-like 99.8 3.4E-18 7.4E-23 102.6 8.2 73 1-73 1-75 (77)
24 cd01763 Sumo Small ubiquitin-r 99.8 5.7E-18 1.2E-22 103.7 9.3 79 74-152 9-87 (87)
25 cd01798 parkin_N amino-termina 99.8 2.8E-18 6.1E-23 101.0 7.4 70 79-148 1-70 (70)
26 cd01794 DC_UbP_C dendritic cel 99.8 1.6E-18 3.6E-23 101.7 6.3 69 3-71 1-69 (70)
27 cd01809 Scythe_N Ubiquitin-lik 99.8 3.9E-18 8.6E-23 100.9 8.0 72 77-148 1-72 (72)
28 PF00240 ubiquitin: Ubiquitin 99.8 3.9E-18 8.4E-23 100.2 7.8 69 82-150 1-69 (69)
29 cd01809 Scythe_N Ubiquitin-lik 99.8 3.9E-18 8.5E-23 101.0 7.7 71 1-71 1-71 (72)
30 cd01810 ISG15_repeat2 ISG15 ub 99.8 3.7E-18 8E-23 101.6 7.0 72 3-74 1-72 (74)
31 cd01792 ISG15_repeat1 ISG15 ub 99.7 9E-18 1.9E-22 101.3 7.5 73 77-149 3-77 (80)
32 cd01792 ISG15_repeat1 ISG15 ub 99.7 7.2E-18 1.6E-22 101.8 6.3 73 1-73 3-77 (80)
33 cd01798 parkin_N amino-termina 99.7 1.1E-17 2.4E-22 98.5 6.6 69 3-71 1-69 (70)
34 PF00240 ubiquitin: Ubiquitin 99.7 2.9E-17 6.3E-22 96.4 8.1 68 6-73 1-68 (69)
35 cd01808 hPLIC_N Ubiquitin-like 99.7 3.8E-17 8.3E-22 96.4 7.6 71 77-148 1-71 (71)
36 cd01796 DDI1_N DNA damage indu 99.7 5.3E-17 1.1E-21 95.7 7.0 68 79-146 1-70 (71)
37 KOG0003 Ubiquitin/60s ribosoma 99.7 1.3E-18 2.9E-23 106.3 0.1 77 77-153 1-77 (128)
38 cd01808 hPLIC_N Ubiquitin-like 99.7 6.3E-17 1.4E-21 95.5 7.2 71 1-72 1-71 (71)
39 cd01812 BAG1_N Ubiquitin-like 99.7 9.5E-17 2.1E-21 94.7 7.2 70 77-147 1-70 (71)
40 cd01790 Herp_N Homocysteine-re 99.7 7.1E-17 1.5E-21 96.0 6.3 71 1-71 2-78 (79)
41 cd01813 UBP_N UBP ubiquitin pr 99.7 1.3E-16 2.8E-21 94.6 7.3 69 77-146 1-72 (74)
42 KOG0004 Ubiquitin/40S ribosoma 99.7 2.6E-17 5.5E-22 107.7 4.6 77 77-153 1-77 (156)
43 cd01796 DDI1_N DNA damage indu 99.7 9.2E-17 2E-21 94.7 6.4 68 3-70 1-70 (71)
44 cd01812 BAG1_N Ubiquitin-like 99.7 1.2E-16 2.7E-21 94.2 6.6 69 1-70 1-69 (71)
45 KOG0005 Ubiquitin-like protein 99.7 4.5E-17 9.7E-22 89.2 4.1 70 1-70 1-70 (70)
46 cd01813 UBP_N UBP ubiquitin pr 99.7 1.6E-16 3.5E-21 94.2 6.6 69 1-70 1-72 (74)
47 cd01790 Herp_N Homocysteine-re 99.7 3.2E-16 7E-21 93.1 7.1 71 76-146 1-77 (79)
48 cd01800 SF3a120_C Ubiquitin-li 99.7 2.3E-16 5.1E-21 94.2 6.3 68 8-75 5-72 (76)
49 cd01763 Sumo Small ubiquitin-r 99.6 3E-15 6.6E-20 91.6 8.3 75 1-75 12-86 (87)
50 KOG0005 Ubiquitin-like protein 99.6 5.9E-16 1.3E-20 84.8 4.2 70 77-146 1-70 (70)
51 smart00213 UBQ Ubiquitin homol 99.6 2.9E-15 6.4E-20 86.4 6.7 64 1-65 1-64 (64)
52 smart00213 UBQ Ubiquitin homol 99.6 5.1E-15 1.1E-19 85.4 6.5 64 77-141 1-64 (64)
53 cd01799 Hoil1_N Ubiquitin-like 99.6 8.4E-15 1.8E-19 86.9 6.4 63 84-147 10-74 (75)
54 KOG0004 Ubiquitin/40S ribosoma 99.6 2.8E-15 6.1E-20 98.2 3.9 76 1-76 1-76 (156)
55 KOG0003 Ubiquitin/60s ribosoma 99.6 6.8E-16 1.5E-20 94.5 0.8 76 1-76 1-76 (128)
56 cd01799 Hoil1_N Ubiquitin-like 99.6 1.9E-14 4.1E-19 85.4 6.8 69 2-71 2-74 (75)
57 TIGR00601 rad23 UV excision re 99.6 1.4E-14 3.1E-19 109.7 7.7 73 1-73 1-76 (378)
58 TIGR00601 rad23 UV excision re 99.5 2.1E-14 4.7E-19 108.8 8.1 73 77-149 1-76 (378)
59 PF11976 Rad60-SLD: Ubiquitin- 99.5 6.1E-14 1.3E-18 82.9 7.4 71 77-147 1-72 (72)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 2.1E-14 4.5E-19 84.2 5.0 54 94-147 18-74 (75)
61 cd01769 UBL Ubiquitin-like dom 99.5 1.8E-13 3.8E-18 80.0 7.3 67 81-147 2-68 (69)
62 PF11976 Rad60-SLD: Ubiquitin- 99.5 3E-13 6.4E-18 79.9 7.3 71 1-71 1-72 (72)
63 cd01795 USP48_C USP ubiquitin- 99.4 2.6E-13 5.5E-18 82.6 5.7 61 12-72 16-77 (107)
64 cd01769 UBL Ubiquitin-like dom 99.4 4E-13 8.6E-18 78.5 6.1 68 4-71 1-68 (69)
65 KOG0010 Ubiquitin-like protein 99.4 1.7E-13 3.6E-18 104.7 5.6 73 1-74 16-88 (493)
66 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 1.5E-13 3.2E-18 80.7 3.8 53 19-71 19-74 (75)
67 cd01795 USP48_C USP ubiquitin- 99.4 6.1E-13 1.3E-17 80.9 6.3 63 88-150 16-79 (107)
68 KOG0010 Ubiquitin-like protein 99.4 8.9E-13 1.9E-17 100.8 6.5 74 76-150 15-88 (493)
69 cd01814 NTGP5 Ubiquitin-like N 99.4 5.5E-13 1.2E-17 83.4 4.3 73 2-74 6-92 (113)
70 cd01814 NTGP5 Ubiquitin-like N 99.4 1.3E-12 2.8E-17 81.7 5.6 74 77-150 5-92 (113)
71 KOG0011 Nucleotide excision re 99.4 1.8E-12 4E-17 94.6 6.4 74 1-74 1-76 (340)
72 KOG0011 Nucleotide excision re 99.3 7.9E-12 1.7E-16 91.3 6.9 74 77-150 1-76 (340)
73 cd01789 Alp11_N Ubiquitin-like 99.3 2.5E-11 5.5E-16 73.7 7.5 71 2-72 3-81 (84)
74 cd01789 Alp11_N Ubiquitin-like 99.3 3.7E-11 8E-16 73.0 8.1 70 79-148 4-81 (84)
75 PF14560 Ubiquitin_2: Ubiquiti 99.2 6.2E-11 1.4E-15 72.5 7.3 70 78-147 3-82 (87)
76 PF14560 Ubiquitin_2: Ubiquiti 99.2 1.6E-10 3.4E-15 70.7 7.8 71 2-72 3-83 (87)
77 cd01811 OASL_repeat1 2'-5' oli 99.2 1.8E-10 3.9E-15 66.3 7.1 72 1-73 1-77 (80)
78 cd01788 ElonginB Ubiquitin-lik 99.2 1.3E-10 2.9E-15 72.5 6.4 73 1-73 1-81 (119)
79 KOG1769 Ubiquitin-like protein 99.1 9.7E-10 2.1E-14 67.1 8.7 78 76-153 20-97 (99)
80 PLN02560 enoyl-CoA reductase 99.0 8.9E-10 1.9E-14 81.9 7.5 69 77-145 1-80 (308)
81 KOG0001 Ubiquitin and ubiquiti 99.0 4.1E-09 9E-14 61.7 8.9 73 79-151 2-74 (75)
82 PLN02560 enoyl-CoA reductase 99.0 9.1E-10 2E-14 81.8 7.0 70 1-70 1-81 (308)
83 PF11543 UN_NPL4: Nuclear pore 99.0 6.7E-10 1.4E-14 66.6 4.9 71 75-146 3-78 (80)
84 KOG4248 Ubiquitin-like protein 99.0 7.8E-10 1.7E-14 91.0 5.9 74 2-76 4-77 (1143)
85 cd01788 ElonginB Ubiquitin-lik 99.0 4.1E-09 8.8E-14 65.9 7.0 65 85-149 10-81 (119)
86 PF13881 Rad60-SLD_2: Ubiquiti 99.0 1.2E-08 2.5E-13 64.9 9.2 73 77-149 3-89 (111)
87 KOG0001 Ubiquitin and ubiquiti 98.9 1E-08 2.3E-13 59.9 7.7 71 3-73 2-72 (75)
88 cd01801 Tsc13_N Ubiquitin-like 98.9 7.4E-09 1.6E-13 61.8 6.3 52 94-145 20-74 (77)
89 PF13881 Rad60-SLD_2: Ubiquiti 98.9 2.2E-08 4.7E-13 63.7 8.0 72 2-73 4-89 (111)
90 KOG4248 Ubiquitin-like protein 98.8 7.3E-09 1.6E-13 85.5 6.2 71 78-149 4-74 (1143)
91 cd01801 Tsc13_N Ubiquitin-like 98.8 1.2E-08 2.6E-13 60.9 5.5 68 2-69 2-74 (77)
92 PF11543 UN_NPL4: Nuclear pore 98.8 1.1E-08 2.3E-13 61.4 4.6 69 1-70 5-78 (80)
93 cd00196 UBQ Ubiquitin-like pro 98.7 1.1E-07 2.4E-12 53.4 7.1 63 85-147 6-68 (69)
94 KOG3493 Ubiquitin-like protein 98.6 1.4E-08 3.1E-13 56.8 1.6 69 78-146 3-71 (73)
95 COG5227 SMT3 Ubiquitin-like pr 98.6 4.8E-08 1E-12 58.4 3.3 78 76-153 24-101 (103)
96 cd00196 UBQ Ubiquitin-like pro 98.6 3.6E-07 7.7E-12 51.3 6.2 67 5-71 2-68 (69)
97 KOG1769 Ubiquitin-like protein 98.5 9.9E-07 2.1E-11 54.0 7.7 74 1-74 21-94 (99)
98 KOG3493 Ubiquitin-like protein 98.5 7E-08 1.5E-12 54.0 1.4 69 1-69 2-70 (73)
99 KOG1872 Ubiquitin-specific pro 98.4 1.2E-06 2.7E-11 67.3 6.4 71 78-149 5-76 (473)
100 cd01811 OASL_repeat1 2'-5' oli 98.3 5.2E-06 1.1E-10 48.1 6.9 68 78-146 2-74 (80)
101 PF11470 TUG-UBL1: GLUT4 regul 98.3 4E-06 8.7E-11 48.1 6.2 63 83-145 3-65 (65)
102 KOG1872 Ubiquitin-specific pro 98.2 2.9E-06 6.3E-11 65.3 5.9 70 3-73 6-76 (473)
103 KOG0006 E3 ubiquitin-protein l 98.2 3E-06 6.5E-11 62.3 5.2 59 88-146 15-73 (446)
104 KOG4495 RNA polymerase II tran 98.2 2.5E-06 5.4E-11 51.7 3.8 62 1-62 1-65 (110)
105 PF13019 Telomere_Sde2: Telome 98.1 4E-05 8.8E-10 51.5 8.2 77 77-153 1-89 (162)
106 KOG0006 E3 ubiquitin-protein l 98.0 1.9E-05 4.2E-10 58.1 6.5 70 1-70 1-73 (446)
107 PF08817 YukD: WXG100 protein 98.0 2.2E-05 4.9E-10 46.9 5.3 68 78-145 4-78 (79)
108 KOG4495 RNA polymerase II tran 98.0 1.3E-05 2.9E-10 48.6 4.1 53 85-137 10-64 (110)
109 PF08817 YukD: WXG100 protein 97.9 7.3E-05 1.6E-09 44.7 6.3 68 2-69 4-78 (79)
110 PF00789 UBX: UBX domain; Int 97.9 0.00016 3.4E-09 43.5 7.8 71 75-145 5-80 (82)
111 PF10302 DUF2407: DUF2407 ubiq 97.9 4.5E-05 9.8E-10 47.3 5.2 59 2-60 2-65 (97)
112 COG5227 SMT3 Ubiquitin-like pr 97.9 0.00013 2.9E-09 43.8 6.9 71 1-71 25-95 (103)
113 COG5417 Uncharacterized small 97.8 0.00023 4.9E-09 41.3 6.8 66 4-69 10-80 (81)
114 smart00166 UBX Domain present 97.8 0.00029 6.2E-09 42.2 7.5 70 76-145 4-78 (80)
115 PF11470 TUG-UBL1: GLUT4 regul 97.8 0.00016 3.5E-09 41.4 5.9 63 7-69 3-65 (65)
116 PF00789 UBX: UBX domain; Int 97.7 0.00053 1.1E-08 41.1 8.2 68 2-69 8-80 (82)
117 cd01772 SAKS1_UBX SAKS1-like U 97.6 0.00071 1.5E-08 40.4 7.5 68 77-145 5-77 (79)
118 cd01773 Faf1_like1_UBX Faf1 ik 97.6 0.00096 2.1E-08 40.0 7.5 69 77-146 6-79 (82)
119 smart00166 UBX Domain present 97.5 0.0009 1.9E-08 40.0 6.7 68 2-69 6-78 (80)
120 cd01767 UBX UBX (ubiquitin reg 97.4 0.0017 3.6E-08 38.5 7.4 66 77-143 3-73 (77)
121 cd01771 Faf1_UBX Faf1 UBX doma 97.4 0.0019 4.2E-08 38.6 7.7 69 76-145 4-77 (80)
122 cd01774 Faf1_like2_UBX Faf1 ik 97.4 0.002 4.3E-08 39.0 7.6 70 76-146 4-83 (85)
123 cd01770 p47_UBX p47-like ubiqu 97.3 0.0021 4.5E-08 38.4 7.2 67 77-143 5-75 (79)
124 COG5417 Uncharacterized small 97.3 0.0026 5.6E-08 37.0 7.0 64 82-145 12-80 (81)
125 cd01772 SAKS1_UBX SAKS1-like U 97.3 0.0026 5.7E-08 37.9 7.0 67 2-69 6-77 (79)
126 PF14533 USP7_C2: Ubiquitin-sp 97.2 0.0049 1.1E-07 43.9 9.3 101 12-114 35-160 (213)
127 KOG3206 Alpha-tubulin folding 97.2 0.0023 5E-08 44.6 7.3 73 2-74 3-83 (234)
128 KOG1639 Steroid reductase requ 97.2 0.00062 1.3E-08 48.7 4.4 70 1-70 1-77 (297)
129 PF10302 DUF2407: DUF2407 ubiq 97.2 0.0014 3E-08 40.7 5.4 48 89-136 14-65 (97)
130 KOG0013 Uncharacterized conser 97.2 0.00075 1.6E-08 47.1 4.4 63 9-71 155-217 (231)
131 PF12436 USP7_ICP0_bdg: ICP0-b 97.1 0.0058 1.2E-07 44.5 9.0 106 15-120 89-223 (249)
132 KOG0013 Uncharacterized conser 97.1 0.0015 3.2E-08 45.6 5.4 63 85-147 155-217 (231)
133 cd01770 p47_UBX p47-like ubiqu 97.1 0.0042 9.1E-08 37.1 6.7 64 2-65 6-73 (79)
134 cd01773 Faf1_like1_UBX Faf1 ik 97.1 0.0057 1.2E-07 36.7 7.2 67 2-69 7-78 (82)
135 cd01767 UBX UBX (ubiquitin reg 97.1 0.0036 7.8E-08 37.1 6.4 65 2-67 4-73 (77)
136 PF13019 Telomere_Sde2: Telome 96.9 0.0091 2E-07 40.4 7.7 62 1-62 1-70 (162)
137 PRK06437 hypothetical protein; 96.9 0.015 3.3E-07 33.5 7.7 59 85-152 9-67 (67)
138 KOG1639 Steroid reductase requ 96.9 0.0029 6.3E-08 45.4 5.3 73 77-151 1-80 (297)
139 cd01774 Faf1_like2_UBX Faf1 ik 96.8 0.012 2.6E-07 35.6 6.9 67 2-69 6-82 (85)
140 KOG3206 Alpha-tubulin folding 96.8 0.0063 1.4E-07 42.5 6.1 60 89-148 15-81 (234)
141 cd01771 Faf1_UBX Faf1 UBX doma 96.7 0.016 3.4E-07 34.7 6.8 67 2-69 6-77 (80)
142 cd00754 MoaD Ubiquitin domain 96.6 0.014 3.1E-07 34.5 6.5 60 88-152 17-80 (80)
143 PF09379 FERM_N: FERM N-termin 96.6 0.022 4.9E-07 33.7 7.1 67 81-147 1-76 (80)
144 PF15044 CLU_N: Mitochondrial 96.5 0.0079 1.7E-07 35.6 4.6 55 93-147 1-57 (76)
145 PF10790 DUF2604: Protein of U 96.5 0.024 5.3E-07 32.0 6.1 67 85-151 4-74 (76)
146 PRK08364 sulfur carrier protei 96.4 0.055 1.2E-06 31.4 7.8 56 88-152 15-70 (70)
147 PF12754 Blt1: Cell-cycle cont 96.4 0.00088 1.9E-08 49.5 0.0 77 77-153 79-182 (309)
148 PRK06488 sulfur carrier protei 96.3 0.05 1.1E-06 31.0 7.0 60 85-152 6-65 (65)
149 KOG4583 Membrane-associated ER 96.3 0.0016 3.4E-08 48.6 0.8 72 2-73 11-88 (391)
150 cd06409 PB1_MUG70 The MUG70 pr 96.2 0.021 4.5E-07 34.6 5.3 69 80-148 4-84 (86)
151 cd06407 PB1_NLP A PB1 domain i 96.0 0.05 1.1E-06 32.7 6.2 64 85-148 8-81 (82)
152 cd06406 PB1_P67 A PB1 domain i 95.9 0.043 9.3E-07 32.7 5.5 43 3-47 5-47 (80)
153 cd06406 PB1_P67 A PB1 domain i 95.7 0.075 1.6E-06 31.7 6.1 38 88-125 12-49 (80)
154 PF11620 GABP-alpha: GA-bindin 95.7 0.063 1.4E-06 32.2 5.7 61 89-149 5-65 (88)
155 cd00565 ThiS ThiaminS ubiquiti 95.7 0.084 1.8E-06 30.0 6.1 57 91-152 9-65 (65)
156 cd06407 PB1_NLP A PB1 domain i 95.6 0.11 2.4E-06 31.2 6.7 45 1-46 1-46 (82)
157 PF09379 FERM_N: FERM N-termin 95.6 0.18 3.8E-06 29.7 7.7 58 5-62 1-65 (80)
158 cd06409 PB1_MUG70 The MUG70 pr 95.6 0.082 1.8E-06 32.0 6.1 37 2-38 2-38 (86)
159 TIGR01683 thiS thiamine biosyn 95.5 0.11 2.4E-06 29.5 6.2 61 85-152 4-64 (64)
160 TIGR01682 moaD molybdopterin c 95.5 0.16 3.6E-06 30.1 7.2 60 88-152 17-80 (80)
161 PLN02799 Molybdopterin synthas 95.4 0.096 2.1E-06 31.2 6.1 61 87-152 19-82 (82)
162 PF14836 Ubiquitin_3: Ubiquiti 95.3 0.17 3.7E-06 30.7 6.8 62 11-73 14-81 (88)
163 KOG4583 Membrane-associated ER 95.3 0.0083 1.8E-07 44.9 1.3 60 76-135 9-72 (391)
164 PF02597 ThiS: ThiS family; I 95.3 0.094 2E-06 30.6 5.7 63 88-152 13-77 (77)
165 TIGR01687 moaD_arch MoaD famil 95.2 0.25 5.5E-06 29.7 7.6 61 88-152 17-88 (88)
166 PRK06437 hypothetical protein; 94.9 0.34 7.3E-06 27.8 7.1 59 4-71 4-62 (67)
167 PF11620 GABP-alpha: GA-bindin 94.9 0.11 2.4E-06 31.2 5.0 59 13-71 5-63 (88)
168 smart00666 PB1 PB1 domain. Pho 94.8 0.25 5.3E-06 29.2 6.6 44 2-46 3-46 (81)
169 smart00455 RBD Raf-like Ras-bi 94.7 0.15 3.2E-06 29.7 5.1 43 81-123 4-46 (70)
170 cd01760 RBD Ubiquitin-like dom 94.5 0.16 3.4E-06 29.8 4.9 44 80-123 3-46 (72)
171 PRK05863 sulfur carrier protei 94.4 0.27 5.8E-06 28.0 5.8 60 85-152 6-65 (65)
172 cd06408 PB1_NoxR The PB1 domai 94.2 0.46 9.9E-06 28.8 6.6 44 1-46 3-46 (86)
173 PF14836 Ubiquitin_3: Ubiquiti 94.2 0.66 1.4E-05 28.2 7.3 65 87-152 14-84 (88)
174 smart00666 PB1 PB1 domain. Pho 94.1 0.33 7.1E-06 28.7 6.1 45 79-124 4-48 (81)
175 smart00295 B41 Band 4.1 homolo 94.0 0.78 1.7E-05 31.9 8.8 73 76-148 3-83 (207)
176 PF15044 CLU_N: Mitochondrial 93.8 0.085 1.8E-06 31.2 3.0 58 17-74 1-60 (76)
177 PRK05659 sulfur carrier protei 93.5 0.67 1.4E-05 26.2 6.4 61 85-152 6-66 (66)
178 PF10790 DUF2604: Protein of U 93.4 0.49 1.1E-05 26.8 5.4 65 9-73 4-72 (76)
179 PRK06944 sulfur carrier protei 93.2 0.86 1.9E-05 25.7 6.8 60 85-152 6-65 (65)
180 KOG2982 Uncharacterized conser 93.2 0.18 3.8E-06 38.0 4.3 56 91-146 352-415 (418)
181 PRK08053 sulfur carrier protei 93.1 0.94 2E-05 25.8 6.7 61 85-152 6-66 (66)
182 PRK06083 sulfur carrier protei 93.0 0.78 1.7E-05 27.7 6.3 61 85-152 24-84 (84)
183 PRK07696 sulfur carrier protei 93.0 1 2.2E-05 25.8 7.0 61 85-152 6-67 (67)
184 cd06408 PB1_NoxR The PB1 domai 92.7 1 2.2E-05 27.3 6.5 54 77-134 3-56 (86)
185 PRK07440 hypothetical protein; 92.7 1.1 2.4E-05 25.9 6.5 61 85-152 10-70 (70)
186 KOG0012 DNA damage inducible p 92.6 0.2 4.4E-06 38.1 4.1 75 1-75 1-79 (380)
187 cd01760 RBD Ubiquitin-like dom 92.5 0.69 1.5E-05 27.0 5.5 45 3-47 2-46 (72)
188 KOG2689 Predicted ubiquitin re 92.3 0.49 1.1E-05 34.7 5.5 69 76-144 210-283 (290)
189 KOG0012 DNA damage inducible p 92.3 0.26 5.6E-06 37.5 4.2 61 85-145 11-73 (380)
190 cd00754 MoaD Ubiquitin domain 92.2 0.92 2E-05 26.5 5.9 58 11-73 16-77 (80)
191 smart00455 RBD Raf-like Ras-bi 92.1 0.92 2E-05 26.3 5.6 45 3-47 2-46 (70)
192 PF00564 PB1: PB1 domain; Int 92.0 1.1 2.4E-05 26.4 6.2 44 79-123 4-48 (84)
193 PF02196 RBD: Raf-like Ras-bin 92.0 0.72 1.6E-05 26.8 5.1 52 79-130 3-56 (71)
194 PF12754 Blt1: Cell-cycle cont 91.7 0.051 1.1E-06 40.5 0.0 61 2-62 80-160 (309)
195 PRK08364 sulfur carrier protei 91.3 1.8 3.8E-05 25.0 6.9 51 12-71 15-65 (70)
196 cd06411 PB1_p51 The PB1 domain 91.1 0.78 1.7E-05 27.2 4.5 36 11-46 7-42 (78)
197 cd05992 PB1 The PB1 domain is 91.1 1.9 4.1E-05 25.2 6.5 43 2-45 2-45 (81)
198 KOG2086 Protein tyrosine phosp 91.0 0.62 1.3E-05 35.9 5.1 66 2-67 307-376 (380)
199 cd05992 PB1 The PB1 domain is 90.9 1.1 2.5E-05 26.2 5.4 40 85-124 8-48 (81)
200 PF14453 ThiS-like: ThiS-like 90.9 1.7 3.8E-05 24.1 5.7 47 90-147 9-55 (57)
201 PF00564 PB1: PB1 domain; Int 90.8 1.5 3.2E-05 25.9 5.8 44 2-46 3-47 (84)
202 COG2104 ThiS Sulfur transfer p 90.8 2 4.4E-05 24.7 6.6 58 90-152 11-68 (68)
203 KOG4261 Talin [Cytoskeleton] 90.7 1.7 3.7E-05 36.7 7.6 101 10-113 12-121 (1003)
204 TIGR02958 sec_mycoba_snm4 secr 90.7 1.4 3E-05 35.1 7.1 70 78-148 4-80 (452)
205 PF14453 ThiS-like: ThiS-like 90.5 1.6 3.4E-05 24.3 5.2 47 13-70 8-54 (57)
206 PLN02799 Molybdopterin synthas 90.1 1.7 3.6E-05 25.8 5.6 67 1-72 2-78 (82)
207 cd06396 PB1_NBR1 The PB1 domai 90.1 1.8 4E-05 25.9 5.6 35 85-121 8-44 (81)
208 COG5100 NPL4 Nuclear pore prot 89.9 1.4 3.1E-05 34.3 6.2 69 78-147 2-78 (571)
209 PF10209 DUF2340: Uncharacteri 89.8 0.97 2.1E-05 29.1 4.5 55 93-147 22-107 (122)
210 cd06396 PB1_NBR1 The PB1 domai 89.8 2.9 6.3E-05 25.0 6.4 35 2-37 2-38 (81)
211 cd01764 Urm1 Urm1-like ubuitin 89.5 0.88 1.9E-05 28.0 4.1 60 91-152 23-94 (94)
212 cd06398 PB1_Joka2 The PB1 doma 89.2 2.7 5.8E-05 25.7 6.1 65 85-149 8-88 (91)
213 PF10209 DUF2340: Uncharacteri 89.2 0.9 1.9E-05 29.3 4.1 56 16-71 21-107 (122)
214 PRK11130 moaD molybdopterin sy 88.9 3.3 7.2E-05 24.5 6.9 52 96-152 25-81 (81)
215 cd01787 GRB7_RA RA (RAS-associ 88.8 2.5 5.3E-05 25.5 5.5 55 3-57 5-66 (85)
216 cd06411 PB1_p51 The PB1 domain 88.4 1.3 2.9E-05 26.2 4.1 36 88-123 8-43 (78)
217 cd01818 TIAM1_RBD Ubiquitin do 88.3 2.1 4.6E-05 25.2 4.8 42 81-122 4-45 (77)
218 KOG2086 Protein tyrosine phosp 88.2 1 2.2E-05 34.7 4.5 67 77-143 306-376 (380)
219 cd01787 GRB7_RA RA (RAS-associ 88.0 2.5 5.5E-05 25.5 5.2 39 78-116 4-42 (85)
220 cd01766 Ufm1 Urm1-like ubiquit 87.4 4.1 8.9E-05 23.8 6.1 63 90-152 19-82 (82)
221 PF08825 E2_bind: E2 binding d 87.1 1.3 2.9E-05 26.6 3.7 56 91-147 1-70 (84)
222 PF02196 RBD: Raf-like Ras-bin 86.7 4.4 9.6E-05 23.5 7.4 52 3-54 3-56 (71)
223 PF14451 Ub-Mut7C: Mut7-C ubiq 86.5 5.1 0.00011 23.9 6.1 55 86-149 22-77 (81)
224 PF03671 Ufm1: Ubiquitin fold 86.5 4.6 0.0001 23.5 5.8 57 90-146 19-76 (76)
225 cd01817 RGS12_RBD Ubiquitin do 86.3 3.6 7.8E-05 24.1 5.1 42 83-124 6-47 (73)
226 PTZ00380 microtubule-associate 86.3 1 2.2E-05 29.1 3.0 46 90-135 43-89 (121)
227 PRK06488 sulfur carrier protei 86.0 4.4 9.5E-05 22.8 5.4 56 9-72 6-61 (65)
228 TIGR02958 sec_mycoba_snm4 secr 85.8 4.3 9.4E-05 32.4 7.0 71 2-73 4-81 (452)
229 smart00295 B41 Band 4.1 homolo 85.7 3 6.5E-05 28.9 5.5 36 2-37 5-40 (207)
230 cd01777 SNX27_RA Ubiquitin dom 85.6 2.1 4.5E-05 26.0 3.9 42 78-119 3-44 (87)
231 cd06410 PB1_UP2 Uncharacterize 85.5 5.7 0.00012 24.6 6.0 39 6-45 18-56 (97)
232 KOG4250 TANK binding protein k 85.2 3 6.6E-05 34.8 5.9 42 85-126 323-364 (732)
233 cd01775 CYR1_RA Ubiquitin doma 85.2 4.9 0.00011 24.9 5.5 42 79-120 5-47 (97)
234 cd01768 RA RA (Ras-associating 84.8 4.6 9.9E-05 24.0 5.4 35 86-120 12-48 (87)
235 PF08825 E2_bind: E2 binding d 84.8 5.1 0.00011 24.1 5.4 56 15-71 1-70 (84)
236 TIGR01687 moaD_arch MoaD famil 84.6 6.5 0.00014 23.5 6.0 59 11-73 16-85 (88)
237 KOG2689 Predicted ubiquitin re 84.5 3.8 8.3E-05 30.3 5.6 67 2-68 212-283 (290)
238 KOG4250 TANK binding protein k 84.5 2.2 4.7E-05 35.6 4.8 42 9-50 323-364 (732)
239 PF08337 Plexin_cytopl: Plexin 84.4 4.7 0.0001 32.8 6.6 64 11-74 202-291 (539)
240 PF02597 ThiS: ThiS family; I 84.3 5.9 0.00013 22.8 6.1 60 12-73 13-74 (77)
241 PF00788 RA: Ras association ( 84.2 5.2 0.00011 23.8 5.5 41 79-119 5-51 (93)
242 PRK11840 bifunctional sulfur c 83.2 6.4 0.00014 30.0 6.5 61 85-152 6-66 (326)
243 KOG2982 Uncharacterized conser 83.0 3.2 7E-05 31.5 4.8 54 15-68 352-413 (418)
244 cd01775 CYR1_RA Ubiquitin doma 82.7 6.3 0.00014 24.4 5.2 36 3-38 5-40 (97)
245 PF12436 USP7_ICP0_bdg: ICP0-b 82.4 1.7 3.6E-05 31.7 3.2 59 90-148 88-152 (249)
246 KOG4572 Predicted DNA-binding 82.4 3.5 7.7E-05 35.2 5.2 64 85-148 3-70 (1424)
247 TIGR01682 moaD molybdopterin c 82.3 7.8 0.00017 22.7 6.5 57 11-72 16-76 (80)
248 KOG3439 Protein conjugation fa 82.3 6.6 0.00014 24.9 5.3 48 3-50 33-84 (116)
249 KOG2561 Adaptor protein NUB1, 82.3 0.39 8.5E-06 37.8 -0.1 59 90-148 53-111 (568)
250 cd00565 ThiS ThiaminS ubiquiti 82.1 6.9 0.00015 22.0 5.2 55 14-73 8-62 (65)
251 PF00788 RA: Ras association ( 81.9 8.6 0.00019 22.9 6.3 39 3-41 5-47 (93)
252 cd06398 PB1_Joka2 The PB1 doma 81.7 9.6 0.00021 23.3 6.7 43 2-45 2-50 (91)
253 cd06410 PB1_UP2 Uncharacterize 81.2 7.6 0.00017 24.0 5.4 45 82-126 18-63 (97)
254 PF11834 DUF3354: Domain of un 81.0 2.7 5.8E-05 24.4 3.0 43 97-145 26-68 (69)
255 TIGR01683 thiS thiamine biosyn 80.6 8 0.00017 21.7 5.6 57 9-72 4-60 (64)
256 PF02017 CIDE-N: CIDE-N domain 80.4 6.2 0.00013 23.4 4.5 34 97-130 21-56 (78)
257 PTZ00380 microtubule-associate 78.9 2.5 5.3E-05 27.4 2.7 48 11-58 41-88 (121)
258 PF02991 Atg8: Autophagy prote 78.7 6.2 0.00013 24.8 4.4 46 90-135 36-82 (104)
259 PF14533 USP7_C2: Ubiquitin-sp 78.6 2.6 5.7E-05 30.0 3.1 29 10-38 132-160 (213)
260 PF09469 Cobl: Cordon-bleu ubi 78.6 1.7 3.7E-05 25.7 1.7 34 105-138 2-38 (79)
261 PF08337 Plexin_cytopl: Plexin 78.0 5.1 0.00011 32.7 4.8 64 86-149 201-290 (539)
262 smart00314 RA Ras association 77.8 12 0.00027 22.3 5.6 36 85-120 14-51 (90)
263 PF00276 Ribosomal_L23: Riboso 77.5 6.1 0.00013 24.1 4.1 40 86-125 20-60 (91)
264 PF14732 UAE_UbL: Ubiquitin/SU 77.3 5.2 0.00011 24.2 3.7 51 96-146 8-67 (87)
265 PRK01777 hypothetical protein; 76.9 15 0.00032 22.7 5.7 53 88-149 18-77 (95)
266 cd01818 TIAM1_RBD Ubiquitin do 76.9 13 0.00028 22.0 6.0 42 4-45 3-44 (77)
267 cd06397 PB1_UP1 Uncharacterize 76.8 13 0.00029 22.2 5.1 37 85-121 8-44 (82)
268 KOG0007 Splicing factor 3a, su 75.6 1.2 2.6E-05 34.1 0.7 49 8-56 290-339 (341)
269 cd01768 RA RA (Ras-associating 75.2 15 0.00032 21.8 6.1 33 10-42 12-44 (87)
270 PF11069 DUF2870: Protein of u 74.5 5.1 0.00011 24.8 3.1 35 118-152 3-38 (98)
271 cd01611 GABARAP Ubiquitin doma 74.3 7.8 0.00017 24.7 4.1 46 90-135 44-90 (112)
272 PRK06083 sulfur carrier protei 74.3 16 0.00035 21.9 6.2 57 9-72 24-80 (84)
273 cd01776 Rin1_RA Ubiquitin doma 74.0 9.7 0.00021 22.8 4.1 43 88-130 15-62 (87)
274 cd01777 SNX27_RA Ubiquitin dom 73.7 14 0.00031 22.4 4.8 42 2-43 3-44 (87)
275 smart00266 CAD Domains present 73.2 15 0.00033 21.5 4.7 45 97-143 19-65 (74)
276 PRK05738 rplW 50S ribosomal pr 71.3 15 0.00032 22.5 4.6 39 86-124 20-59 (92)
277 PF02505 MCR_D: Methyl-coenzym 71.2 13 0.00027 25.1 4.6 47 12-62 76-123 (153)
278 smart00314 RA Ras association 71.2 19 0.00042 21.4 6.2 30 10-39 15-44 (90)
279 cd01611 GABARAP Ubiquitin doma 67.8 23 0.00051 22.5 5.2 44 15-58 45-89 (112)
280 TIGR03260 met_CoM_red_D methyl 67.5 21 0.00045 23.9 5.0 46 13-62 76-121 (150)
281 PF11069 DUF2870: Protein of u 67.4 5.8 0.00013 24.6 2.2 30 42-72 3-32 (98)
282 PF02991 Atg8: Autophagy prote 67.1 15 0.00033 23.0 4.2 55 16-71 38-97 (104)
283 PF02192 PI3K_p85B: PI3-kinase 67.0 12 0.00025 22.3 3.4 23 13-35 2-24 (78)
284 cd01615 CIDE_N CIDE_N domain, 66.9 21 0.00046 21.2 4.5 35 97-131 21-57 (78)
285 KOG0007 Splicing factor 3a, su 66.7 3 6.4E-05 32.0 1.1 50 83-132 289-339 (341)
286 smart00144 PI3K_rbd PI3-kinase 66.4 30 0.00065 21.7 7.4 72 78-149 19-105 (108)
287 smart00144 PI3K_rbd PI3-kinase 65.2 32 0.00069 21.6 8.4 62 11-72 29-104 (108)
288 cd06539 CIDE_N_A CIDE_N domain 65.0 23 0.00049 21.0 4.3 47 97-145 21-69 (78)
289 cd06397 PB1_UP1 Uncharacterize 65.0 27 0.0006 20.8 5.7 43 2-45 2-44 (82)
290 PF00794 PI3K_rbd: PI3-kinase 64.5 31 0.00068 21.4 7.0 71 77-147 17-101 (106)
291 PF02824 TGS: TGS domain; Int 64.5 16 0.00036 20.2 3.6 58 80-146 2-59 (60)
292 PF06234 TmoB: Toluene-4-monoo 64.4 29 0.00063 20.9 5.9 60 89-148 17-84 (85)
293 cd01817 RGS12_RBD Ubiquitin do 63.5 28 0.0006 20.4 5.7 44 4-47 3-46 (73)
294 TIGR03636 L23_arch archaeal ri 61.6 24 0.00051 20.9 4.0 35 86-120 14-48 (77)
295 PRK11840 bifunctional sulfur c 60.5 56 0.0012 25.0 6.8 59 9-74 6-64 (326)
296 PF10787 YfmQ: Uncharacterised 59.8 38 0.00081 22.6 5.0 90 16-105 20-123 (149)
297 PF10407 Cytokin_check_N: Cdc1 59.7 33 0.00072 20.1 6.3 32 12-43 4-36 (73)
298 PF14847 Ras_bdg_2: Ras-bindin 59.3 29 0.00063 21.8 4.4 36 79-114 3-38 (105)
299 cd01766 Ufm1 Urm1-like ubiquit 59.2 34 0.00074 20.0 5.3 60 14-73 19-79 (82)
300 KOG4572 Predicted DNA-binding 59.1 16 0.00035 31.5 4.0 52 9-60 3-56 (1424)
301 cd01782 AF6_RA_repeat1 Ubiquit 59.0 44 0.00095 21.2 5.1 37 1-37 24-62 (112)
302 PRK14548 50S ribosomal protein 58.2 28 0.00061 20.9 4.0 35 86-120 21-55 (84)
303 KOG2561 Adaptor protein NUB1, 57.7 11 0.00025 30.0 2.8 58 14-71 53-110 (568)
304 smart00143 PI3K_p85B PI3-kinas 57.3 17 0.00037 21.6 2.9 23 13-35 2-24 (78)
305 KOG2507 Ubiquitin regulatory p 56.8 29 0.00063 27.6 4.8 76 75-150 313-393 (506)
306 COG1977 MoaD Molybdopterin con 56.8 12 0.00026 22.3 2.3 55 94-152 25-84 (84)
307 KOG3483 Uncharacterized conser 56.3 40 0.00086 19.9 5.3 62 91-152 31-93 (94)
308 PF00276 Ribosomal_L23: Riboso 56.3 33 0.00071 20.9 4.2 40 11-50 21-61 (91)
309 KOG2507 Ubiquitin regulatory p 55.8 24 0.00053 28.0 4.2 73 2-74 316-393 (506)
310 PRK05738 rplW 50S ribosomal pr 55.3 35 0.00076 20.8 4.2 40 10-49 20-60 (92)
311 KOG4598 Putative ubiquitin-spe 55.1 44 0.00096 28.6 5.8 108 13-122 879-1012(1203)
312 TIGR03636 L23_arch archaeal ri 55.1 35 0.00076 20.2 4.0 33 11-43 15-47 (77)
313 PF04110 APG12: Ubiquitin-like 54.9 46 0.001 20.2 4.7 35 13-47 18-52 (87)
314 PF09138 Urm1: Urm1 (Ubiquitin 54.4 15 0.00032 22.7 2.5 64 87-152 18-96 (96)
315 cd06536 CIDE_N_ICAD CIDE_N dom 54.3 38 0.00083 20.2 4.1 46 97-144 21-70 (80)
316 cd01666 TGS_DRG_C TGS_DRG_C: 53.2 45 0.00097 19.5 5.3 55 90-146 18-74 (75)
317 cd01782 AF6_RA_repeat1 Ubiquit 52.8 58 0.0012 20.7 5.7 47 74-120 21-74 (112)
318 COG5100 NPL4 Nuclear pore prot 52.8 56 0.0012 25.9 5.7 71 1-72 1-79 (571)
319 KOG4598 Putative ubiquitin-spe 52.2 29 0.00063 29.6 4.4 56 88-145 878-939 (1203)
320 cd05736 Ig2_Follistatin_like S 50.0 32 0.0007 19.4 3.4 21 108-128 6-26 (76)
321 COG0089 RplW Ribosomal protein 49.4 43 0.00093 20.7 3.9 61 85-145 20-90 (94)
322 PF00794 PI3K_rbd: PI3-kinase 49.2 62 0.0013 20.0 7.7 70 2-71 18-101 (106)
323 KOG3439 Protein conjugation fa 49.1 68 0.0015 20.4 5.3 35 89-123 47-81 (116)
324 COG0089 RplW Ribosomal protein 49.0 53 0.0012 20.2 4.2 35 10-44 21-55 (94)
325 PRK14548 50S ribosomal protein 48.9 51 0.0011 19.8 4.1 33 11-43 22-54 (84)
326 CHL00030 rpl23 ribosomal prote 48.4 44 0.00095 20.5 3.8 39 86-124 19-58 (93)
327 PF03931 Skp1_POZ: Skp1 family 47.9 18 0.0004 20.1 2.0 32 1-32 1-32 (62)
328 PF01191 RNA_pol_Rpb5_C: RNA p 47.9 51 0.0011 19.3 3.9 44 103-151 20-63 (74)
329 cd06537 CIDE_N_B CIDE_N domain 47.5 61 0.0013 19.4 4.2 46 97-145 21-68 (81)
330 cd06404 PB1_aPKC PB1 domain is 46.8 63 0.0014 19.4 6.5 43 2-45 2-45 (83)
331 PF13699 DUF4157: Domain of un 43.9 55 0.0012 19.3 3.7 46 100-145 4-49 (79)
332 cd06538 CIDE_N_FSP27 CIDE_N do 43.5 71 0.0015 19.0 4.2 34 97-131 21-56 (79)
333 KOG4147 Uncharacterized conser 43.4 39 0.00085 21.4 3.1 56 15-70 27-111 (127)
334 PF08783 DWNN: DWNN domain; I 43.0 69 0.0015 18.8 4.9 30 90-119 13-44 (74)
335 PF04126 Cyclophil_like: Cyclo 42.9 27 0.00058 22.4 2.4 29 1-30 1-29 (120)
336 KOG2660 Locus-specific chromos 42.8 24 0.00053 26.9 2.5 47 89-135 166-214 (331)
337 PF13180 PDZ_2: PDZ domain; PD 42.6 61 0.0013 18.7 3.8 44 108-151 28-73 (82)
338 cd06405 PB1_Mekk2_3 The PB1 do 42.5 72 0.0016 18.8 4.9 36 2-38 2-37 (79)
339 PF08299 Bac_DnaA_C: Bacterial 40.8 12 0.00026 21.5 0.5 20 98-117 1-20 (70)
340 cd01612 APG12_C Ubiquitin-like 39.5 86 0.0019 18.9 6.1 32 14-45 19-50 (87)
341 KOG1364 Predicted ubiquitin re 39.1 30 0.00065 26.6 2.5 65 2-66 279-349 (356)
342 PF01376 Enterotoxin_b: Heat-l 38.8 57 0.0012 19.5 3.1 31 3-33 38-68 (102)
343 PRK12280 rplW 50S ribosomal pr 38.2 75 0.0016 21.6 4.0 38 86-123 22-60 (158)
344 KOG3391 Transcriptional co-rep 37.3 34 0.00074 22.6 2.2 27 124-150 112-138 (151)
345 PF03671 Ufm1: Ubiquitin fold 37.3 87 0.0019 18.3 6.0 57 13-69 18-75 (76)
346 cd01784 rasfadin_RA Ubiquitin- 36.2 88 0.0019 19.0 3.7 35 10-44 12-46 (87)
347 cd05748 Ig_Titin_like Immunogl 36.1 54 0.0012 18.3 2.9 20 109-128 8-27 (74)
348 PF03658 Ub-RnfH: RnfH family 35.8 1E+02 0.0022 18.6 5.8 57 88-149 15-74 (84)
349 cd05762 Ig8_MLCK Eighth immuno 35.7 57 0.0012 19.7 3.0 19 111-129 26-44 (98)
350 COG0139 HisI Phosphoribosyl-AM 35.7 98 0.0021 19.7 4.0 55 98-152 38-95 (111)
351 PRK09570 rpoH DNA-directed RNA 35.5 67 0.0014 19.1 3.1 43 103-150 23-65 (79)
352 cd05864 Ig2_VEGFR-2 Second imm 35.3 54 0.0012 18.5 2.7 22 108-129 6-27 (70)
353 PRK05841 flgE flagellar hook p 35.1 52 0.0011 27.5 3.4 40 74-113 246-294 (603)
354 cd01816 Raf_RBD Ubiquitin doma 34.7 99 0.0021 18.2 4.7 41 3-43 2-42 (74)
355 cd01778 RASSF1_RA Ubiquitin-li 34.4 1.2E+02 0.0025 18.9 5.3 36 9-44 15-50 (96)
356 KOG1364 Predicted ubiquitin re 34.0 51 0.0011 25.5 3.0 65 78-142 279-349 (356)
357 smart00760 Bac_DnaA_C Bacteria 34.0 23 0.00049 19.5 0.9 20 98-117 1-20 (60)
358 KOG2378 cAMP-regulated guanine 33.8 2.5E+02 0.0054 22.9 6.7 38 78-115 237-274 (573)
359 PF11055 Gsf2: Glucose signall 33.8 1.2E+02 0.0026 23.6 4.9 31 1-31 1-34 (377)
360 COG5222 Uncharacterized conser 32.8 1.7E+02 0.0038 22.2 5.5 44 4-47 6-53 (427)
361 PF06622 SepQ: SepQ protein; 31.6 2.1E+02 0.0046 21.0 9.1 50 18-67 138-189 (305)
362 PF07933 DUF1681: Protein of u 31.0 1.6E+02 0.0035 20.1 4.8 91 56-147 66-158 (160)
363 cd05746 Ig4_Peroxidasin Fourth 30.5 96 0.0021 17.0 3.2 21 108-128 6-26 (69)
364 PRK08453 fliD flagellar cappin 30.4 1.9E+02 0.0041 24.7 5.9 43 85-127 136-188 (673)
365 KOG2660 Locus-specific chromos 30.4 42 0.00091 25.6 2.0 48 13-60 166-215 (331)
366 cd05874 Ig6_NrCAM Sixth immuno 30.2 1.1E+02 0.0024 17.4 3.5 21 107-127 5-25 (77)
367 PF09269 DUF1967: Domain of un 30.2 31 0.00068 19.8 1.1 38 91-145 25-62 (69)
368 PF06487 SAP18: Sin3 associate 30.1 65 0.0014 20.8 2.6 21 127-147 100-120 (120)
369 PRK00529 elongation factor P; 30.0 1.3E+02 0.0028 21.0 4.3 44 52-95 84-127 (186)
370 KOG1654 Microtubule-associated 29.7 1E+02 0.0022 19.7 3.3 45 90-134 48-93 (116)
371 KOG0526 Nucleosome-binding fac 29.6 1.5E+02 0.0033 24.5 5.0 51 74-124 57-107 (615)
372 COG0299 PurN Folate-dependent 29.3 1.4E+02 0.0031 21.2 4.3 55 63-123 132-187 (200)
373 PTZ00191 60S ribosomal protein 29.1 1.3E+02 0.0027 20.3 3.9 36 85-120 81-116 (145)
374 PF12949 HeH: HeH/LEM domain; 29.0 50 0.0011 16.3 1.5 15 95-109 2-16 (35)
375 PF11525 CopK: Copper resistan 28.8 45 0.00099 19.3 1.6 15 132-146 7-21 (73)
376 cd04976 Ig2_VEGFR Second immun 28.6 85 0.0018 17.5 2.8 22 108-129 6-27 (71)
377 cd05868 Ig4_NrCAM Fourth immun 28.5 84 0.0018 17.8 2.8 21 107-127 8-28 (76)
378 cd01783 DAGK_delta_RA Ubiquiti 28.3 1.5E+02 0.0033 18.4 4.1 33 88-120 18-53 (97)
379 PF04023 FeoA: FeoA domain; I 28.1 58 0.0013 18.4 2.1 20 130-149 26-45 (74)
380 PF02563 Poly_export: Polysacc 28.0 1.1E+02 0.0023 17.9 3.2 55 56-111 8-68 (82)
381 cd05863 Ig2_VEGFR-3 Second imm 28.0 46 0.001 18.7 1.6 20 108-127 6-25 (67)
382 PRK10872 relA (p)ppGpp synthet 27.9 2E+02 0.0044 24.9 5.8 64 78-150 405-468 (743)
383 PF11816 DUF3337: Domain of un 27.8 1.1E+02 0.0024 23.4 4.0 47 14-60 251-312 (331)
384 TIGR03595 Obg_CgtA_exten Obg f 27.7 40 0.00086 19.3 1.3 18 129-146 46-63 (69)
385 cd06535 CIDE_N_CAD CIDE_N doma 27.5 1.4E+02 0.003 17.7 4.5 30 97-126 21-52 (77)
386 cd05875 Ig6_hNeurofascin_like 27.2 1.2E+02 0.0026 17.2 3.4 21 107-127 5-25 (77)
387 PF09631 Sen15: Sen15 protein; 27.1 71 0.0015 19.7 2.4 50 13-64 45-94 (101)
388 PF01502 PRA-CH: Phosphoribosy 27.0 1.4E+02 0.0031 17.6 3.9 53 100-152 8-63 (75)
389 TIGR00038 efp translation elon 26.9 1.3E+02 0.0029 20.9 4.0 21 75-95 106-126 (184)
390 COG1918 FeoA Fe2+ transport sy 26.8 53 0.0011 19.3 1.7 23 130-152 25-47 (75)
391 PF14807 AP4E_app_platf: Adapt 26.6 1.7E+02 0.0037 18.4 4.7 47 18-64 28-78 (104)
392 PF14847 Ras_bdg_2: Ras-bindin 26.6 1.7E+02 0.0037 18.4 6.0 36 3-38 3-38 (105)
393 KOG3076 5'-phosphoribosylglyci 26.6 1.4E+02 0.003 21.2 3.9 21 90-110 161-181 (206)
394 TIGR03028 EpsE polysaccharide 26.5 2.4E+02 0.0051 20.3 5.4 52 58-110 1-58 (239)
395 KOG4146 Ubiquitin-like protein 25.8 1.7E+02 0.0037 18.1 7.5 57 95-152 34-101 (101)
396 PRK08453 fliD flagellar cappin 25.7 3.2E+02 0.0069 23.4 6.5 25 9-33 136-160 (673)
397 cd05857 Ig2_FGFR Second immuno 25.5 1.4E+02 0.003 16.9 3.5 19 111-129 20-38 (85)
398 PRK12426 elongation factor P; 25.4 77 0.0017 22.2 2.5 86 2-95 38-127 (185)
399 cd04978 Ig4_L1-NrCAM_like Four 25.4 1.3E+02 0.0027 16.6 3.2 19 110-128 11-29 (76)
400 PRK12280 rplW 50S ribosomal pr 25.3 2.1E+02 0.0045 19.5 4.5 35 10-44 22-56 (158)
401 PRK00051 hisI phosphoribosyl-A 24.5 1.3E+02 0.0027 19.7 3.2 71 79-152 17-91 (125)
402 PF04921 XAP5: XAP5, circadian 24.4 2.7E+02 0.0058 20.4 5.2 54 2-55 100-163 (239)
403 PF05402 PqqD: Coenzyme PQQ sy 24.3 51 0.0011 18.3 1.3 25 92-116 25-49 (68)
404 PF11816 DUF3337: Domain of un 23.9 3.3E+02 0.0072 20.8 6.0 61 91-151 252-330 (331)
405 PF01282 Ribosomal_S24e: Ribos 23.7 1.5E+02 0.0032 17.7 3.2 27 94-120 10-36 (84)
406 PF08154 NLE: NLE (NUC135) dom 23.6 1.5E+02 0.0032 16.6 5.6 40 89-128 18-59 (65)
407 TIGR00691 spoT_relA (p)ppGpp s 23.6 2.6E+02 0.0057 23.9 5.7 63 78-149 361-423 (683)
408 cd05852 Ig5_Contactin-1 Fifth 23.4 1.2E+02 0.0026 17.1 2.8 19 109-127 10-28 (73)
409 cd05733 Ig6_L1-CAM_like Sixth 23.2 1.5E+02 0.0033 16.7 3.5 21 107-127 5-25 (77)
410 KOG4261 Talin [Cytoskeleton] 22.6 1.6E+02 0.0034 25.7 4.1 59 88-146 14-81 (1003)
411 PF01577 Peptidase_S30: Potyvi 22.5 3E+02 0.0065 19.7 5.9 72 78-150 151-225 (245)
412 cd05855 Ig_TrkB_d5 Fifth domai 22.1 71 0.0015 18.7 1.6 22 109-130 7-28 (79)
413 PF09581 Spore_III_AF: Stage I 21.7 69 0.0015 22.0 1.8 26 95-120 162-187 (188)
414 cd05484 retropepsin_like_LTR_2 21.6 1.8E+02 0.0038 17.1 3.4 43 85-127 8-54 (91)
415 PRK13605 endoribonuclease SymE 21.5 1.3E+02 0.0029 19.2 2.8 39 2-41 57-96 (113)
416 cd05867 Ig4_L1-CAM_like Fourth 21.4 1E+02 0.0022 17.3 2.3 18 111-128 12-29 (76)
417 COG4055 McrD Methyl coenzyme M 21.4 2.7E+02 0.0059 18.8 5.4 45 13-61 85-130 (165)
418 KOG3751 Growth factor receptor 21.3 1.8E+02 0.004 24.0 4.1 68 3-70 191-269 (622)
419 PF08766 DEK_C: DEK C terminal 21.3 59 0.0013 17.5 1.1 22 96-117 20-41 (54)
420 cd06402 PB1_p62 The PB1 domain 21.1 2.1E+02 0.0045 17.4 4.1 36 89-124 19-55 (87)
421 PLN02593 adrenodoxin-like ferr 21.0 2.4E+02 0.0051 17.9 4.7 29 1-29 1-29 (117)
422 cd01669 TGS_Ygr210_C TGS_Ygr21 20.6 1.9E+02 0.0042 16.8 4.6 52 90-146 24-75 (76)
423 PRK13552 frdB fumarate reducta 20.6 1.9E+02 0.0041 21.0 3.9 24 11-34 24-47 (239)
424 cd05747 Ig5_Titin_like M5, fif 20.5 1.4E+02 0.0031 17.4 2.8 17 111-127 29-45 (92)
425 PRK09555 feoA ferrous iron tra 20.0 1.2E+02 0.0025 17.6 2.2 21 130-150 24-44 (74)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.90 E-value=5.8e-23 Score=129.12 Aligned_cols=97 Identities=35% Similarity=0.577 Sum_probs=92.4
Q ss_pred ecccccccccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCccccc
Q 040824 56 LADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~ 135 (154)
.-.|++.+-.+++++++..+.|+|+|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy 86 (103)
T cd01802 7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY 86 (103)
T ss_pred CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc
Confidence 34567778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEEeecCC
Q 040824 136 NIEGGSVLHLVLALRGG 152 (154)
Q Consensus 136 ~i~~~~~i~~~~~~~gg 152 (154)
+|++|++|++.++++||
T Consensus 87 ~I~~~stL~l~~~l~GG 103 (103)
T cd01802 87 NISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCCEEEEEEecCCC
Confidence 99999999999999997
No 2
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.85 E-value=7.5e-21 Score=113.23 Aligned_cols=74 Identities=28% Similarity=0.374 Sum_probs=70.2
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+. ++++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+++++++|++.++++||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 5788887 3678899999999999999999999999999999999999999999999999999999999999997
No 3
>PTZ00044 ubiquitin; Provisional
Probab=99.84 E-value=1.5e-20 Score=112.53 Aligned_cols=76 Identities=49% Similarity=0.800 Sum_probs=74.0
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.++.+||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.83 E-value=4.7e-20 Score=110.39 Aligned_cols=76 Identities=86% Similarity=1.265 Sum_probs=73.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+..+|+.+.++++++.||++||+++++.+|+|++.|+|+|+|+.|+|+.+|++|++++|++|++..+.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999987
No 5
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.83 E-value=4.4e-20 Score=110.52 Aligned_cols=76 Identities=63% Similarity=0.993 Sum_probs=73.8
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|.|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.83 E-value=4.6e-20 Score=109.82 Aligned_cols=74 Identities=26% Similarity=0.515 Sum_probs=71.6
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+...|+++.+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++|||++++++++..+++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999987
No 7
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.83 E-value=3.4e-20 Score=110.42 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|+++.|+|++.|+|+|+|+.|.|+.+|++|++++++++++.+++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998764
No 8
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.82 E-value=6.8e-20 Score=110.00 Aligned_cols=76 Identities=22% Similarity=0.474 Sum_probs=73.3
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+|+|+...|+.+.+++++++||++||++|++..++|+++|+|.|+|+.|+|+ +|++||+++|++|+++..++||
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 488999999999999999999999999999999999999999999999999998 9999999999999999999988
No 9
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.82 E-value=5.4e-20 Score=109.53 Aligned_cols=73 Identities=36% Similarity=0.606 Sum_probs=70.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||+++++|+++++.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999875
No 10
>PTZ00044 ubiquitin; Provisional
Probab=99.80 E-value=2.6e-19 Score=107.14 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=71.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 11
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.79 E-value=4.1e-19 Score=104.94 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=67.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
|.|+|++..|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+.+|++||+++|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 67899999999999999999999999999999999999999999999999999999999999999999864
No 12
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.79 E-value=3.9e-19 Score=105.82 Aligned_cols=73 Identities=40% Similarity=0.599 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+||. ++.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++++++++.++..+
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G 73 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG 73 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 8999997 378999999999999999999999999999999999999999999999999999999999987654
No 13
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.79 E-value=5.3e-19 Score=105.94 Aligned_cols=73 Identities=33% Similarity=0.587 Sum_probs=69.3
Q ss_pred eeeeeeecCCce-EEEe-eCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 77 TMIKVKTLTGKE-IEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~~~~-~~~~-v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|+|+|+..+|+. +.++ +.+++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++++
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~ 75 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ 75 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999987 6885 899999999999999999999999999999999999999999999999999999886
No 14
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.79 E-value=3.2e-19 Score=105.40 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|+++.|+.+.+++++++||++||++|+++.++|+++|+|.|.|+.|.|+.+|++||+.++++||+-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999874
No 15
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.79 E-value=4.7e-19 Score=106.16 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCE-EEEE-EeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~-~~~~-v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+. +.++ +.+++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++||+.++++|++.+++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999986 7895 8999999999999999999999999999999999999999999999999999998764
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.79 E-value=5.1e-19 Score=103.86 Aligned_cols=69 Identities=28% Similarity=0.591 Sum_probs=66.0
Q ss_pred eeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 80 ~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.|+..+|+++.+++++++||++||++|++..|+|++.|+|+|.|+.|+|+.+|++|+++++++|+++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 567889999999999999999999999999999999999999999999999999999999999999874
No 17
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.79 E-value=9.7e-19 Score=104.64 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||+++++..++|++.|+|+|+|+.|.|+.+|++|++.++++|++.++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987543
No 18
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.78 E-value=1e-18 Score=109.82 Aligned_cols=75 Identities=51% Similarity=0.744 Sum_probs=71.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999887543
No 19
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.78 E-value=1.4e-18 Score=103.95 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=71.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||++||++|++.+++|++.|+|+|+|+.|.|+.+|++|++.++++|++.++..+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.77 E-value=2.5e-18 Score=103.15 Aligned_cols=74 Identities=38% Similarity=0.698 Sum_probs=70.5
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCC--CCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
|+++|+..+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 688999999999999999999999999999999999 99999999999999999999999999999999988754
No 21
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.77 E-value=1.6e-18 Score=103.60 Aligned_cols=70 Identities=30% Similarity=0.633 Sum_probs=67.3
Q ss_pred cCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 84 ~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.+|+++.+++++++||++||++|+..+|+|++.|+|+|+|+.|+|+.+|++|++++|++|+++++.+||+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999984
No 22
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.77 E-value=1.4e-18 Score=104.32 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+...|+.+.+++++++||.+||++|+++.++++++|+|.|.|+.|+|+ +|++||++++++|+++....++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999 9999999999999998876543
No 23
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.77 E-value=3.4e-18 Score=102.56 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCC--CCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~--~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++ |+++|+|.|+|+.|+|+.+|++|++++++++++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999887754
No 24
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.77 E-value=5.7e-18 Score=103.71 Aligned_cols=79 Identities=23% Similarity=0.485 Sum_probs=75.8
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|.|+|++.+|+.+.+.+.+++|+..||++++++.|+|+++++|+|+|+.|+++.|+++|++++||+|+++++++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999999998
No 25
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.76 E-value=2.8e-18 Score=101.05 Aligned_cols=70 Identities=34% Similarity=0.666 Sum_probs=66.5
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
|+|+...|+.+.+++++++||+++|++|++.+|+|+++|+|+|+|++|+|+.+|++|||++|+++++..|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 4678889999999999999999999999999999999999999999999999999999999999998764
No 26
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.76 E-value=1.6e-18 Score=101.71 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=66.2
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
++|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|.|+.|+|+.+|++|+++++++|++++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 468899999999999999999999999999999999999999999999999999999999999999875
No 27
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.76 E-value=3.9e-18 Score=100.94 Aligned_cols=72 Identities=43% Similarity=0.667 Sum_probs=68.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
|.|+|+..+|+.+.+++++++||++||+++++.+|+|++.|+|+|+|+.|+|+.+|++||+++|+++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999998753
No 28
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.76 E-value=3.9e-18 Score=100.19 Aligned_cols=69 Identities=52% Similarity=0.943 Sum_probs=65.3
Q ss_pred eecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 82 ~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
++.+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++||+.+|++|++.++.+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 456889999999999999999999999999999999999999999999999999999999999988754
No 29
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.76 E-value=3.9e-18 Score=100.97 Aligned_cols=71 Identities=44% Similarity=0.692 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
|+|+|+..+|+.+.+++++++||.+||+++++..|+|++.|+|.|+|+.|+|+.+|++||+++++++++..
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999998875
No 30
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=3.7e-18 Score=101.57 Aligned_cols=72 Identities=31% Similarity=0.575 Sum_probs=68.8
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+...|+.+.+++++++||.+||++|+...|+|++.|+|.|+|+.|.|+.+|++||+++++++++.++..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~ 72 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR 72 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 579999999999999999999999999999999999999999999999999999999999999999987754
No 31
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.74 E-value=9e-18 Score=101.35 Aligned_cols=73 Identities=29% Similarity=0.424 Sum_probs=69.8
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeE--EECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRL--IYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l--~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|.|+|+..+|+.+.+++++++||++||++|++..|+|+++|+| .|+|+.|+|+.+|++||+++|++|++.++-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 799999999999999999999999999874
No 32
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.74 E-value=7.2e-18 Score=101.75 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE--EEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L--~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|+++|+| .|+|+.|+|+.+|++||+.+++++++.++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 6899999999999999999999999999999999999999999 789999999999999999999999998874
No 33
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.73 E-value=1.1e-17 Score=98.49 Aligned_cols=69 Identities=38% Similarity=0.721 Sum_probs=66.4
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
|+|+..+|+.+.+++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999999999875
No 34
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.73 E-value=2.9e-17 Score=96.44 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=64.6
Q ss_pred EeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 6 ~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+.+|+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|++|++.++++|++.+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999988764
No 35
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.72 E-value=3.8e-17 Score=96.43 Aligned_cols=71 Identities=37% Similarity=0.454 Sum_probs=65.6
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
+.|+++...|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|.|+.+|++||+++|++|++.++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 35788888886 489999999999999999999999999999999999999999999999999999998764
No 36
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.71 E-value=5.3e-17 Score=95.74 Aligned_cols=68 Identities=32% Similarity=0.588 Sum_probs=63.0
Q ss_pred eeeeec-CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCC-CcccccccCCCCEEEEE
Q 040824 79 IKVKTL-TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLV 146 (154)
Q Consensus 79 i~v~~~-~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~ 146 (154)
|+|+.. +|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+ .+|++||+++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467788 889999999999999999999999999999999999999999987 68999999999999863
No 37
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.3e-18 Score=106.35 Aligned_cols=77 Identities=61% Similarity=0.955 Sum_probs=73.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|.++++...|++..+++.+++||..+|++|....|+|++.|+|+|+|+.|+|+.|+++||++..|+|+++.+++||-
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999983
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.70 E-value=6.3e-17 Score=95.52 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=66.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|+|+|+...|+ ..+++++++||.+||++|++..++++++|+|.|.|+.|.|+.+|++||++++++++++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999887 589999999999999999999999999999999999999999999999999999998763
No 39
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.70 E-value=9.5e-17 Score=94.74 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=65.5
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+.|+|+.. |+.+.+++++++||++||+++++.+|+|+++|+|+|+|+.|+|+.+|++||+++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46788885 88899999999999999999999999999999999999999999999999999999998864
No 40
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.69 E-value=7.1e-17 Score=95.97 Aligned_cols=71 Identities=25% Similarity=0.279 Sum_probs=63.2
Q ss_pred CEEEEEeCCCCEE--EEEEeCCCcHHHHHHHHHhHhC--CCCCCeEEEEcceEeccCceecccc--cccccceeeee
Q 040824 1 MQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~~~~~--~~~v~~~~tv~~lk~~i~~~~~--~~~~~q~L~~~g~~L~d~~~l~~~~--i~~~~~i~l~~ 71 (154)
|.|+||.++++.+ .+++++++||.+||++|++..+ .+++.|+|+|.|+.|+|+.+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 5799999999884 5555899999999999998874 5689999999999999999999996 99999999875
No 41
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.69 E-value=1.3e-16 Score=94.63 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=63.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE---CCeecCCCCcccccccCCCCEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY---AGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~---~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
|.|.|+. .|+.+.+++++++||++||+++++.+|+|+++|+|+| +|+.+.|+.+|++|++++|+.|+++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 3566777 7788999999999999999999999999999999996 8999999999999999999999876
No 42
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.6e-17 Score=107.67 Aligned_cols=77 Identities=60% Similarity=0.943 Sum_probs=74.6
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|.|+|+...+++..+++.+++||..+|++|+...|||+++|+++|.|+.|+|+.+|+||+|+..++|++.++++||+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999984
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.69 E-value=9.2e-17 Score=94.71 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=63.6
Q ss_pred EEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccC-ceecccccccccceeee
Q 040824 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (154)
Q Consensus 3 v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~ 70 (154)
|+|+.. +|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+ .+|++|++++++++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578888 899999999999999999999999999999999999999999987 58999999999999764
No 44
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.68 E-value=1.2e-16 Score=94.23 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|++. |+.+.+++++++||.+||++|+..+++|+++|+|+|+|+.|.|+.+|++|++++++++++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 68999985 8989999999999999999999999999999999999999999999999999999999775
No 45
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.5e-17 Score=89.17 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|.+.|++++|+.+.++++++++|..+|++++++.|+||..|+|+|.|+.++|+.+.++|++..|+.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7799999999999999999999999999999999999999999999999999999999999999999864
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.68 E-value=1.6e-16 Score=94.21 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE---cceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~---~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|.|++ +|+.+++++++++||++||++|++.+++|+++|+|+| .|+.+.|+.+|++|++++++.|.+.
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 6789996 7899999999999999999999999999999999996 8999999999999999999998765
No 47
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.67 E-value=3.2e-16 Score=93.14 Aligned_cols=71 Identities=25% Similarity=0.247 Sum_probs=62.9
Q ss_pred ceeeeeeecCCce--EEEeeCCCchHHHHHHHHhhhcC--CCCCceeEEECCeecCCCCcccccc--cCCCCEEEEE
Q 040824 76 GTMIKVKTLTGKE--IEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYN--IEGGSVLHLV 146 (154)
Q Consensus 76 ~~~i~v~~~~~~~--~~~~v~~~~tv~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~--i~~~~~i~~~ 146 (154)
++.++|+..+++. +.+++++++||++||+++++..+ .|+++|+|+|+|+.|+|+.||++|. +.+|.+||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 3678999999988 45555899999999999999875 5689999999999999999999996 9999999986
No 48
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.66 E-value=2.3e-16 Score=94.23 Aligned_cols=68 Identities=32% Similarity=0.655 Sum_probs=64.3
Q ss_pred CCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 8 ~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
.+|+.+++++++++||.+||++|+..+++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g 72 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG 72 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence 37899999999999999999999999999999999999999999999999999999999999988654
No 49
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.62 E-value=3e-15 Score=91.61 Aligned_cols=75 Identities=17% Similarity=0.444 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++.+++|+..||++++++.++|++.|+|+|+|+.|+++.|+.+|++.++++|++.++..+
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEeccc
Confidence 679999999999999999999999999999999999999999999999999999999999999999999887643
No 50
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.9e-16 Score=84.79 Aligned_cols=70 Identities=84% Similarity=1.209 Sum_probs=66.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
|.+.+++.+|+.+.++++++++|..+|..++++.|+||.+|+|+|.|+.+.|+.|-++|++.-||.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5678899999999999999999999999999999999999999999999999999999999999999863
No 51
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.61 E-value=2.9e-15 Score=86.39 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=60.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceeccccccccc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~ 65 (154)
|+|+|+..+ +.+.+++++++||++||++++..+++|++.|+|.|+|+.|.|+.+|++|++++++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 789999988 7899999999999999999999999999999999999999999999999998774
No 52
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.59 E-value=5.1e-15 Score=85.37 Aligned_cols=64 Identities=50% Similarity=0.826 Sum_probs=60.2
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGS 141 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~ 141 (154)
|.|+|+..+ +.+.+++++++||++||++++..+|+|++.|+|+|+|+.|.|+.+|++||+.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578888887 6889999999999999999999999999999999999999999999999999885
No 53
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.57 E-value=8.4e-15 Score=86.95 Aligned_cols=63 Identities=29% Similarity=0.429 Sum_probs=57.8
Q ss_pred cCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecC-CCCcccccccC-CCCEEEEEE
Q 040824 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTARDYNIE-GGSVLHLVL 147 (154)
Q Consensus 84 ~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~-d~~~L~~~~i~-~~~~i~~~~ 147 (154)
..|.++.+++++++||++||+++++++|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 467788999999999999999999999999999999 9998885 77999999997 889999875
No 54
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.8e-15 Score=98.15 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+.+.+++..+++.+++||..+|++|+++.++|++.|+|+|.|+.|.|..+|+||+|...+++++++...++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999987654
No 55
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.8e-16 Score=94.51 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+++++...|++..+++.+++||..+|+.|..+.|+||+.|+|.|+|+.|+|..++++||+...+++++.++..++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999887654
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.55 E-value=1.9e-14 Score=85.43 Aligned_cols=69 Identities=29% Similarity=0.365 Sum_probs=60.2
Q ss_pred EEEE--EeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEec-cCceecccccc-cccceeeee
Q 040824 2 QIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (154)
Q Consensus 2 ~v~v--~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~-d~~~l~~~~i~-~~~~i~l~~ 71 (154)
++.| +...|.++.+++++++||++||++++.++|+|++.|+| |.|+.|. |+.+|++|++. +|+++++.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 4555 34467889999999999999999999999999999999 9998885 67899999998 779998764
No 57
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.4e-14 Score=109.69 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhC---CCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~---~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+||+..|+.+.+++++++||.+||++|+...+ ++++.|+|+|+|+.|+|+.+|++|+|+++++|++.+..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999888764
No 58
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=2.1e-14 Score=108.77 Aligned_cols=73 Identities=38% Similarity=0.724 Sum_probs=69.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcC---CCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG---IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~---i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 68999999999999999999999999999999998 99999999999999999999999999999999988764
No 59
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.53 E-value=6.1e-14 Score=82.92 Aligned_cols=71 Identities=39% Similarity=0.735 Sum_probs=65.3
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
|+|+|+..+|+.+.+.+.+++++..|++.+++..++|+ +.++|.|+|+.|+++.|++++|+++|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 57889999999999999999999999999999999999 999999999999999999999999999999874
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.52 E-value=2.1e-14 Score=84.25 Aligned_cols=54 Identities=26% Similarity=0.441 Sum_probs=49.3
Q ss_pred CCCchHHHHHHHHhhhc--CC-CCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 94 EPTDTIERIKERVEEKE--GI-PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 94 ~~~~tv~~LK~~i~~~~--~i-~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+.++||.+||++|+++. ++ ++++|+|+|.|+.|+|+.||++|||++|++|+++.
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 34789999999999996 46 59999999999999999999999999999999875
No 61
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.49 E-value=1.8e-13 Score=80.01 Aligned_cols=67 Identities=61% Similarity=0.999 Sum_probs=62.5
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
|+..+|+.+.+.+++++|+.+||++|++.+|+|++.|+|.|+|+.++|+.+|.+|++.+++.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 4566788999999999999999999999999999999999999999999999999999999998864
No 62
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.47 E-value=3e-13 Score=79.94 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC-CCeEEEEcceEeccCceecccccccccceeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~-~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
|+|+|+..+|+.+.+.+.+++++..|++.+++..++++ +..+|.|+|+.|+++.|+++|++.+++.|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999998763
No 63
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.44 E-value=2.6e-13 Score=82.58 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=56.5
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCc-eecccccccccceeeeee
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLADYNIQKESTLHLVLR 72 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~-~l~~~~i~~~~~i~l~~~ 72 (154)
...+++++++||.+||..|.++++++|.+|+|.++|+.|.|+. +|++||+.+++++.+.++
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 4678999999999999999999999999999999999997755 999999999999988875
No 64
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.44 E-value=4e-13 Score=78.49 Aligned_cols=68 Identities=66% Similarity=0.966 Sum_probs=63.1
Q ss_pred EEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 4 ~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
+|+..+|+.+.+++++++||.+||++|+..+++|+++|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 36777899999999999999999999999999999999999999999999999999999999987753
No 65
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.43 E-value=1.7e-13 Score=104.75 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
++|+||+.++ .+.+.+..+.||.+||+.|.+.++.+++.++|+|.|++|+|+.+|..|||.+|.+|||+++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 4799999887 799999999999999999999999999999999999999999999999999999999999854
No 66
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.43 E-value=1.5e-13 Score=80.67 Aligned_cols=53 Identities=30% Similarity=0.495 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHhHh--CC-CCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 19 SSDTIDNVKAKIQDKE--GI-PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 19 ~~~tv~~lk~~i~~~~--~~-~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
.++||.+||++|+++. ++ +++.|+|+|.|+.|+|+.+|++|+|+++++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3779999999999996 46 49999999999999999999999999999999874
No 67
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.42 E-value=6.1e-13 Score=80.94 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=57.7
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecC-CCCcccccccCCCCEEEEEEeec
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~-d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
...+.|++++||.+||.+|.+.+++||++|+|+++|..|. |.+||++||+..++.|++.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 4578899999999999999999999999999999999876 78899999999999999988653
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.38 E-value=8.9e-13 Score=100.81 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=69.9
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
.++|+||+.+. .+.|.|..+.||.+||++|+..++.++++++|+|.|+.|+|+.||..|||+||.+||++++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 36788999877 899999999999999999999999999999999999999999999999999999999998864
No 69
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.38 E-value=5.5e-13 Score=83.45 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=61.2
Q ss_pred EEEEEeCCCCEE-EEEEeCCCcHHHHHHHHHhHh-----CCC--CCCeEEEEcceEeccCceecccc------cccccce
Q 040824 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (154)
Q Consensus 2 ~v~v~~~~~~~~-~~~v~~~~tv~~lk~~i~~~~-----~~~--~~~q~L~~~g~~L~d~~~l~~~~------i~~~~~i 67 (154)
.|+++..+|..+ +..+++++||.+||++|+... ++| ++.|+|+|.|+.|+|+.+|++|+ +....++
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 466777788665 788899999999999999444 444 99999999999999999999999 5666788
Q ss_pred eeeeeee
Q 040824 68 HLVLRLR 74 (154)
Q Consensus 68 ~l~~~~~ 74 (154)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 8888764
No 70
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.37 E-value=1.3e-12 Score=81.74 Aligned_cols=74 Identities=27% Similarity=0.310 Sum_probs=61.4
Q ss_pred eeeeeeecCCceE-EEeeCCCchHHHHHHHHhhhc-----CC--CCCceeEEECCeecCCCCcccccc------cCCCCE
Q 040824 77 TMIKVKTLTGKEI-EIDIEPTDTIERIKERVEEKE-----GI--PPVQQRLIYAGKQLADDKTARDYN------IEGGSV 142 (154)
Q Consensus 77 ~~i~v~~~~~~~~-~~~v~~~~tv~~LK~~i~~~~-----~i--~~~~~~l~~~g~~l~d~~~L~~~~------i~~~~~ 142 (154)
+.|..+..+|..+ ++.+.+++||++||++|++.. ++ ++++|+|+|.|+.|+|+.||++|+ +....+
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 4455556677654 688999999999999999665 34 499999999999999999999999 677789
Q ss_pred EEEEEeec
Q 040824 143 LHLVLALR 150 (154)
Q Consensus 143 i~~~~~~~ 150 (154)
+|+.++..
T Consensus 85 mHvvlr~~ 92 (113)
T cd01814 85 MHVVVQPP 92 (113)
T ss_pred EEEEecCC
Confidence 99988764
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.35 E-value=1.8e-12 Score=94.59 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhC--CCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~--~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+||++.++.|++++.+++||.++|.+|+...| +|++.|+|+|+|++|.|+.++.+|+++.+..|.+.++..
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999998 999999999999999999999999999999998887654
No 72
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.30 E-value=7.9e-12 Score=91.30 Aligned_cols=74 Identities=32% Similarity=0.632 Sum_probs=70.2
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcC--CCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
|.|++|+..++.+.+++.+++||.++|++|+...| +|.+.|+|+|+|+.|.|+.++.+|++..++.|-+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 67999999999999999999999999999999999 999999999999999999999999999999888887654
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.28 E-value=2.5e-11 Score=73.67 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=58.4
Q ss_pred EEEEEeCC-CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-Ecce-----Ee-ccCceecccccccccceeeeee
Q 040824 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~-~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g~-----~L-~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
.|.|.... ....+.++++++||.+||++++..+|++|+.|+|. |.|+ .| +|+.+|++|++.+|.+||+.-.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 56676644 23355679999999999999999999999999995 7776 45 6777999999999999988743
No 74
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.28 E-value=3.7e-11 Score=72.96 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=57.4
Q ss_pred eeeeecC-CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe-----ec-CCCCcccccccCCCCEEEEEEe
Q 040824 79 IKVKTLT-GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK-----QL-ADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 79 i~v~~~~-~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~-----~l-~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
+.|.... ....+..++++.||.+||++++..+|+|++.|+|. |.++ .| +|..+|++||+++|++|||.-.
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 4444422 33456679999999999999999999999999995 7777 35 6888999999999999998753
No 75
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.22 E-value=6.2e-11 Score=72.51 Aligned_cols=70 Identities=27% Similarity=0.480 Sum_probs=56.0
Q ss_pred eeeeeecCC--ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC----Ce---ec-CCCCcccccccCCCCEEEEEE
Q 040824 78 MIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA----GK---QL-ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~~--~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~----g~---~l-~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.|+|..... ...+..++.+.||++||++++..+|+|++.|+|.+. +. .+ +|..+|.+||+.+|++|+|.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 455555443 478899999999999999999999999999999865 11 23 578999999999999999864
No 76
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.19 E-value=1.6e-10 Score=70.72 Aligned_cols=71 Identities=27% Similarity=0.535 Sum_probs=56.9
Q ss_pred EEEEEeCCC--CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc----c---eEe-ccCceecccccccccceeeee
Q 040824 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~----g---~~L-~d~~~l~~~~i~~~~~i~l~~ 71 (154)
+|.|..... ...+.++++++||++||.+++..+|+|++.|+|.+. + ..+ +|+.+|.+||+.+|.+|++.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 577777655 378899999999999999999999999999999865 1 334 557799999999999998764
Q ss_pred e
Q 040824 72 R 72 (154)
Q Consensus 72 ~ 72 (154)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 77
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.18 E-value=1.8e-10 Score=66.32 Aligned_cols=72 Identities=26% Similarity=0.369 Sum_probs=64.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-----ceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-----GKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-----g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
++|+|+.++...+.+.+++..+|.++|++|+...+++- .|+|.|. .+.|++.++|++|||..+..|.+.-+.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 68999999999999999999999999999999999988 9999986 267899999999999988877665543
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.16 E-value=1.3e-10 Score=72.48 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=62.1
Q ss_pred CEEEEEeCCCCE-EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceeccccc-------ccccceeeeee
Q 040824 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~-~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i-------~~~~~i~l~~~ 72 (154)
|.++++.+..++ +.+++.++.||.+||++|+.....||+.|+|+-.++.|+|+++|++||+ .+.+++-+.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 567776665554 7789999999999999999999999999999977899999999999999 55677766665
Q ss_pred e
Q 040824 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 3
No 79
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.7e-10 Score=67.11 Aligned_cols=78 Identities=21% Similarity=0.408 Sum_probs=73.1
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
-+++.|+..++....|.+..+++...|+...|++.|++....+++|+|..+.+..|.++++.++||.|.++..+.||.
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 366778887888899999999999999999999999999999999999999999999999999999999999999884
No 80
>PLN02560 enoyl-CoA reductase
Probab=99.04 E-value=8.9e-10 Score=81.87 Aligned_cols=69 Identities=25% Similarity=0.512 Sum_probs=59.4
Q ss_pred eeeeeeecCCceE---EEeeCCCchHHHHHHHHhhhcCC-CCCceeEEEC---C----eecCCCCcccccccCCCCEEEE
Q 040824 77 TMIKVKTLTGKEI---EIDIEPTDTIERIKERVEEKEGI-PPVQQRLIYA---G----KQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~~~~~---~~~v~~~~tv~~LK~~i~~~~~i-~~~~~~l~~~---g----~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
|.|+|+..+|+.+ .+++++++||++||++|++..+. ++++|+|.+. | ..++|+.+|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 5677887778776 79999999999999999999986 8999999973 3 3788999999999999998654
No 81
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.03 E-value=4.1e-09 Score=61.65 Aligned_cols=73 Identities=59% Similarity=0.944 Sum_probs=67.1
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
+++....|+...+.+.+..++..+|.+++...++|+..|++.+.|+.|.|+.++.+|+|..++++++..+.++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence 3455678899999999999999999999999999999999999999999999999999999999999888764
No 82
>PLN02560 enoyl-CoA reductase
Probab=99.02 E-value=9.1e-10 Score=81.84 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=61.7
Q ss_pred CEEEEEeCCCCEE---EEEEeCCCcHHHHHHHHHhHhCC-CCCCeEEEEc---c----eEeccCceecccccccccceee
Q 040824 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~~~~~---~~~v~~~~tv~~lk~~i~~~~~~-~~~~q~L~~~---g----~~L~d~~~l~~~~i~~~~~i~l 69 (154)
|+|+|+.++|+.+ .+++++++||++||++|+++.+. ++++|+|.+. | ..|+|+.+|+++|+++++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8899999888886 79999999999999999999886 8999999973 3 4789999999999999998764
Q ss_pred e
Q 040824 70 V 70 (154)
Q Consensus 70 ~ 70 (154)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 83
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=99.01 E-value=6.7e-10 Score=66.60 Aligned_cols=71 Identities=27% Similarity=0.493 Sum_probs=44.5
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC---eec--CCCCcccccccCCCCEEEEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG---KQL--ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g---~~l--~d~~~L~~~~i~~~~~i~~~ 146 (154)
..|.|.|++.+| ...+++++++|+.+|+++|++.+++|...+.|..+. ..+ +++.+|+++|++.||.|++.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 457888999887 778899999999999999999999999988886332 244 47889999999999999864
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.8e-10 Score=91.04 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
.|+||+++.++.++.|...+||.+||+.+..+.+++.+.|+|+|.|+.|.|++++.+|++ +|.+|||+-++.++
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999 99999999886543
No 85
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.96 E-value=4.1e-09 Score=65.91 Aligned_cols=65 Identities=26% Similarity=0.283 Sum_probs=57.2
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCccccccc-------CCCCEEEEEEee
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNI-------EGGSVLHLVLAL 149 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i-------~~~~~i~~~~~~ 149 (154)
+..++.+++.++.||.+||++|+.....||++|+|+-.+..|+|++||++||+ ++-+++-+..+.
T Consensus 10 ~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 10 HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 44578899999999999999999999999999999966678999999999999 567777776664
No 86
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.95 E-value=1.2e-08 Score=64.91 Aligned_cols=73 Identities=34% Similarity=0.527 Sum_probs=54.1
Q ss_pred eeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcC-------CCCCceeEEECCeecCCCCcccccccCCCC------E
Q 040824 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEG-------IPPVQQRLIYAGKQLADDKTARDYNIEGGS------V 142 (154)
Q Consensus 77 ~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~-------i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~------~ 142 (154)
+.|.....+|. ..++.+++++||++||+.|...+. ..+..++|+|.|+.|+|+.+|+++++..|+ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34444555888 788999999999999999998774 246678999999999999999999998777 4
Q ss_pred EEEEEee
Q 040824 143 LHLVLAL 149 (154)
Q Consensus 143 i~~~~~~ 149 (154)
+|+.++.
T Consensus 83 mHlvvrp 89 (111)
T PF13881_consen 83 MHLVVRP 89 (111)
T ss_dssp EEEEE-S
T ss_pred EEEEecC
Confidence 6666654
No 87
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.92 E-value=1e-08 Score=59.91 Aligned_cols=71 Identities=83% Similarity=1.124 Sum_probs=65.7
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
+.+....|+.+.+++....++..+|.+++...+++++.|++.+.|+.|.|+.++.+|+|..++++++..+.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~ 72 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSL 72 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEec
Confidence 45667889999999999999999999999999999999999999999999999999999999999887664
No 88
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.89 E-value=7.4e-09 Score=61.82 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=46.9
Q ss_pred CCCchHHHHHHHHhhhcC-CCCCceeEE--ECCeecCCCCcccccccCCCCEEEE
Q 040824 94 EPTDTIERIKERVEEKEG-IPPVQQRLI--YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 94 ~~~~tv~~LK~~i~~~~~-i~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
+++.||.+||..+++..+ +++++|+|. +.|+.|.|+.+|.++|+.+|++||+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 578999999999999886 589999886 7899999999999999999999876
No 89
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.86 E-value=2.2e-08 Score=63.68 Aligned_cols=72 Identities=31% Similarity=0.505 Sum_probs=53.5
Q ss_pred EEEEEeCCCC-EEEEEEeCCCcHHHHHHHHHhHh-------CCCCCCeEEEEcceEeccCceeccccccccc------ce
Q 040824 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (154)
Q Consensus 2 ~v~v~~~~~~-~~~~~v~~~~tv~~lk~~i~~~~-------~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~i 67 (154)
.|+++..+|. .-++.+++++||.+||+.|...- -..++..+|+|.|+.|+|+.+|+++.+..++ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 5677777998 78899999999999999998652 2346779999999999999999999987655 45
Q ss_pred eeeeee
Q 040824 68 HLVLRL 73 (154)
Q Consensus 68 ~l~~~~ 73 (154)
|+++++
T Consensus 84 Hlvvrp 89 (111)
T PF13881_consen 84 HLVVRP 89 (111)
T ss_dssp EEEE-S
T ss_pred EEEecC
Confidence 666554
No 90
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=7.3e-09 Score=85.49 Aligned_cols=71 Identities=38% Similarity=0.594 Sum_probs=67.7
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
.+.||+.+.+...|.+...+||.++|.++++...|+.+.|+++|.|+.|.|++++.+|++ +|-+||+.-|.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverp 74 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERP 74 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccC
Confidence 488999999999999999999999999999999999999999999999999999999999 99999998664
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.82 E-value=1.2e-08 Score=60.95 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=53.7
Q ss_pred EEEEEeCC-CCEEEEEE-eCCCcHHHHHHHHHhHhC-CCCCCeEEE--EcceEeccCceecccccccccceee
Q 040824 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~-~~~~~~~v-~~~~tv~~lk~~i~~~~~-~~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
.|.++..+ .....+++ +++.||.+||..+++..+ .++++|+|. +.|+.|.|+.+|.+||+.+++++++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45566655 33323444 478899999999998876 589999996 6799999999999999999998765
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.79 E-value=1.1e-08 Score=61.38 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=43.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc---eEe--ccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g---~~L--~d~~~l~~~~i~~~~~i~l~ 70 (154)
|-|+|+..+| .+.+++++++|+.+|+++|.+.++++++.|.|+.+. ..+ +++.+|+++|++.|+.+++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 5678888764 588899999999999999999999999999987432 344 46779999999999998764
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.71 E-value=1.1e-07 Score=53.39 Aligned_cols=63 Identities=40% Similarity=0.652 Sum_probs=58.1
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
++....+.+.++.|+.++++++++++|.+++.+.|.++|..+.+...+.++++.+++.|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 677788999999999999999999999999999999999999988888899999999998764
No 94
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.4e-08 Score=56.76 Aligned_cols=69 Identities=25% Similarity=0.334 Sum_probs=61.1
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.+.+...-|+...+.+.+++||+++|+.+++.+|..++...|--.+..++|.-+|++|.+.+|-.+++.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 344556678899999999999999999999999999999988877778999999999999999988775
No 95
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.8e-08 Score=58.37 Aligned_cols=78 Identities=23% Similarity=0.398 Sum_probs=72.8
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.+.+.|...++..+-|.+..+.+...|....+++.|-.-+..|++|+|+.++.++|..+++.++++.|++...+.||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 467778788899999999999999999999999999999999999999999999999999999999999988888885
No 96
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.56 E-value=3.6e-07 Score=51.26 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=59.2
Q ss_pred EEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 5 v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
|+..++....+.+.+++|+.++++.+..+.+.+++.+.|+++|..+.+...+.++++.+++.+++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444678888999999999999999999999999999999999999988888889999999887653
No 97
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.9e-07 Score=54.04 Aligned_cols=74 Identities=15% Similarity=0.400 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
++|+|+..++....+.|..+++...|+....+..|++.+..+++|+|+.++...|.++++..+++.|.+.....
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQT 94 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecc
Confidence 35777776778889999999999999999999999999999999999999999999999999999998776543
No 98
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7e-08 Score=54.03 Aligned_cols=69 Identities=26% Similarity=0.416 Sum_probs=60.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
+++.+...-|+...+.+.+++||+++|..|...+|..++...|.--+..++|+-+|++|.+.++..+.+
T Consensus 2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 356677777899999999999999999999999999999988876667789999999999998876644
No 99
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-06 Score=67.27 Aligned_cols=71 Identities=21% Similarity=0.330 Sum_probs=63.5
Q ss_pred eeeeeecCCceEEEe-eCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 78 MIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~-v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
.+.|+. .|+.+.+. ++.++|...||+++...+|++|++|+++.+|..+.|+-.+....|++|.+++++-..
T Consensus 5 ~v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 355666 67788887 999999999999999999999999999999999999989999999999999887544
No 100
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.32 E-value=5.2e-06 Score=48.06 Aligned_cols=68 Identities=24% Similarity=0.399 Sum_probs=57.5
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC---C--eecCCCCcccccccCCCCEEEEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA---G--KQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~---g--~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
+++|+......+.+.|+|..+|..+|++|....+++- .|+|.|. | ..|.+..+|++|||-..-.|.++
T Consensus 2 qVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 2 QVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLL 74 (80)
T ss_pred EEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEE
Confidence 5677777777899999999999999999999999875 8898874 2 26789999999999888777665
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.30 E-value=4e-06 Score=48.07 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=47.0
Q ss_pred ecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEE
Q 040824 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 83 ~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
..+++...+.+.++.++.++-+..+++++++++...|.++++.++-+.+..-.|+.+|+.+++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 346788999999999999999999999999999999999999999999999999999999875
No 102
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.9e-06 Score=65.29 Aligned_cols=70 Identities=24% Similarity=0.431 Sum_probs=63.6
Q ss_pred EEEEeCCCCEEEEE-EeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 3 v~v~~~~~~~~~~~-v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|.|+ |.|+.++++ ++.++|+..||+++...++++|++|++...|..+.|+..+....|+++.++++.-+.
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 5555 678889887 999999999999999999999999999999999999999999999999999888654
No 103
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3e-06 Score=62.28 Aligned_cols=59 Identities=29% Similarity=0.628 Sum_probs=54.5
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.++++|+.+.+|.+||+.++...|+|+++.+++|.|++|.++.++..+.+..-+.++++
T Consensus 15 ~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 15 GLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred ceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 47899999999999999999999999999999999999999999998888777777766
No 104
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.18 E-value=2.5e-06 Score=51.71 Aligned_cols=62 Identities=29% Similarity=0.436 Sum_probs=51.5
Q ss_pred CEEEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cc-eEeccCceecccccc
Q 040824 1 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 62 (154)
Q Consensus 1 m~v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g-~~L~d~~~l~~~~i~ 62 (154)
|.++++.. +..++.+...++.||.+||++++....-|++.|+|+. +. +.|+|.++|+++|..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 44555444 4455788999999999999999999999999999996 33 889999999999864
No 105
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=98.07 E-value=4e-05 Score=51.53 Aligned_cols=77 Identities=27% Similarity=0.409 Sum_probs=58.7
Q ss_pred eeeeeeecCC----ceEEEeeCCCchHHHHHHHHhhhcCCCCCce-eEEE-CCeec--CCCCcccccccCCC----CEEE
Q 040824 77 TMIKVKTLTG----KEIEIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIY-AGKQL--ADDKTARDYNIEGG----SVLH 144 (154)
Q Consensus 77 ~~i~v~~~~~----~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~-~l~~-~g~~l--~d~~~L~~~~i~~~----~~i~ 144 (154)
|+|+|...+| .++.+.++++.||.+|+..+...++++...+ .|.. .+..+ .++..+.++.-.+. -++.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 4688888888 5788999999999999999999999998884 3443 34444 45556666654444 3788
Q ss_pred EEEeecCCC
Q 040824 145 LVLALRGGG 153 (154)
Q Consensus 145 ~~~~~~gg~ 153 (154)
+..+++||+
T Consensus 81 l~~rl~GGK 89 (162)
T PF13019_consen 81 LSLRLRGGK 89 (162)
T ss_pred EEEeccCCC
Confidence 999999985
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.9e-05 Score=58.12 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=60.2
Q ss_pred CEEEEEeC---CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~---~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|.+.|.+. .-..++++++.+.+|.+||+-+++..|+|++..+++|.|+.|+++.++..+.+..-+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 56677664 12447899999999999999999999999999999999999999999998888777777766
No 107
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.99 E-value=2.2e-05 Score=46.93 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=48.1
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC------ceeEE-ECCeecCCCCcccccccCCCCEEEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV------QQRLI-YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~------~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
+++|...+++.+.+.++.+.++++|...+.+..+.+.. ..+|. .+|..|+++.+|+++|+.+|+.+++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45555655688999999999999999999998886322 24444 5788999999999999999999976
No 108
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.98 E-value=1.3e-05 Score=48.61 Aligned_cols=53 Identities=26% Similarity=0.266 Sum_probs=46.7
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE-CC-eecCCCCccccccc
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AG-KQLADDKTARDYNI 137 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~-~g-~~l~d~~~L~~~~i 137 (154)
+..++.+...++.||-+||.+++....-|+.+|+|.. .. ..|+|+.+|+++|.
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 4567889999999999999999999999999999975 43 57899999999975
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.89 E-value=7.3e-05 Score=44.68 Aligned_cols=68 Identities=21% Similarity=0.421 Sum_probs=47.1
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCe----EEE---EcceEeccCceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ----RLI---FAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q----~L~---~~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
+|+|...++..+.+.++.+.+|.+|...+-+..+.+.... .|. -+|..|+++.+|+++++.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 5677775568899999999999999999999887543221 233 3588999999999999999998865
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.89 E-value=0.00016 Score=43.46 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=59.3
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCc-eeEE--ECCeecCCC--CcccccccCCCCEEEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLI--YAGKQLADD--KTARDYNIEGGSVLHL 145 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~-~~l~--~~g~~l~d~--~~L~~~~i~~~~~i~~ 145 (154)
+...|.|+.++|+.+.-.+.+++|+.+|..-+......+... +.|. |..+.+.+. .||++.|+.++++|++
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 345788889999999999999999999999998888777665 7776 666777633 6999999999999876
No 111
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.86 E-value=4.5e-05 Score=47.34 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=47.0
Q ss_pred EEEEEeCCC-CEEEEEEe--CCCcHHHHHHHHHhHhC--CCCCCeEEEEcceEeccCceecccc
Q 040824 2 QIFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 60 (154)
Q Consensus 2 ~v~v~~~~~-~~~~~~v~--~~~tv~~lk~~i~~~~~--~~~~~q~L~~~g~~L~d~~~l~~~~ 60 (154)
.|+|++.++ ..++++++ .+.||..||..|.+... ....+++|+|+|+.|.|...|+.--
T Consensus 2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 477888874 45778777 78899999999999984 5566788889999999988766533
No 112
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00013 Score=43.82 Aligned_cols=71 Identities=15% Similarity=0.365 Sum_probs=64.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
+.++|...++..+.+.+..+++...|.+......|-..+..+++|+|..++.+++..+++..+++.|..+.
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~ 95 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVT 95 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHH
Confidence 35677777888999999999999999999999999999999999999999999999999999998876544
No 113
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.79 E-value=0.00023 Score=41.28 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=54.8
Q ss_pred EEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCC-----CCCeEEEEcceEeccCceecccccccccceee
Q 040824 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 4 ~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~-----~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
-++.++|..+.++++...++..|...+.+...++ .+..+..-.++.|.++..|.+|++.+|+.+.+
T Consensus 10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3467789999999999999999999998876533 34456667789999999999999999998754
No 114
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.76 E-value=0.00029 Score=42.19 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=57.5
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecCC---CCcccccccCCCCEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLAD---DKTARDYNIEGGSVLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d---~~~L~~~~i~~~~~i~~ 145 (154)
...|.|+.++|+.+.-.+++++|+.+|.+-+....+.+...+.|. |..+.+.+ +.||.+.|+.+++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 356788889999999999999999999999977667766778886 66666753 57999999998888765
No 115
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.75 E-value=0.00016 Score=41.44 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.1
Q ss_pred eCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceee
Q 040824 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 7 ~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
..+++.+.+.+.+++++.++-+...++++++++.=.|.|+++.++.+.++...|+.+|+.+.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 357888999999999999999999999999999999999999999999999999999998753
No 116
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.72 E-value=0.00053 Score=41.12 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=56.8
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCC-eEEE--EcceEeccC--ceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-q~L~--~~g~~L~d~--~~l~~~~i~~~~~i~l 69 (154)
.|.|+..+|+.+.-....++|+.+|.+-+......+... -.|. |..+.+.++ .+|++.|+.+.+++.+
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 588999999999999999999999999999887766654 5565 567887665 5999999999988865
No 117
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.60 E-value=0.00071 Score=40.41 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=55.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecCC---CCcccccccCCCCEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLAD---DKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d---~~~L~~~~i~~~~~i~~ 145 (154)
..|.++.++|+.+.-.++.++|+.++.+-+....+-+ ....|+ |.-+.+.+ +.||.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4677888899999999999999999999998765433 556776 67777753 57999999999998866
No 118
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.56 E-value=0.00096 Score=40.03 Aligned_cols=69 Identities=14% Similarity=0.275 Sum_probs=58.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC---CCCcccccccCCCCEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~~~ 146 (154)
-.|.|+.++|+...-.+..++++.+|..-+.. .|.+++.+.|+ |.-+.+. .+.||.+.|+.+.+++.|-
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq 79 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 79 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence 46888899999999999999999999999988 58888999998 6555553 4579999999999998764
No 119
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.47 E-value=0.0009 Score=40.01 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=54.2
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEecc---Cceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l 69 (154)
+|.|+..+|+.+.-..+.++|+.+|.+.+....+.....-.|. |..+.+.+ +.+|.+.++.+.+++.+
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 5789999999999999999999999999966666555556665 56677754 46999999988887754
No 120
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.42 E-value=0.0017 Score=38.52 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=51.5
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC---CCCcccccccCCCCEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVL 143 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i 143 (154)
..|.++.++|+.+.-.++.++|+.+|.+-+.....- ...+.|. |..+.+. .+.||.+.|+.+++.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 467788899999999999999999999999866543 5567776 5566664 5889999999954443
No 121
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.42 E-value=0.0019 Score=38.64 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=57.7
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC---CCCcccccccCCCCEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~~ 145 (154)
..+|.++.++|+...-.+..++++.+|..-+... |.++..++|+ |.-+.+. .+.||.+.|+.+.++|.|
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 3567888899999999999999999999999875 7788888887 6666663 467999999999998866
No 122
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.40 E-value=0.002 Score=39.03 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=56.4
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC--CeecC--------CCCcccccccCCCCEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA--GKQLA--------DDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~--g~~l~--------d~~~L~~~~i~~~~~i~~ 145 (154)
...|.++.++|+...-.+..++|+++|..-+.. .+..++.+.|+.+ -+.+. .+.||.+.|+.+.+++.|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 357788889999999999999999999999964 4556788888843 36664 467999999998888765
Q ss_pred E
Q 040824 146 V 146 (154)
Q Consensus 146 ~ 146 (154)
-
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 3
No 123
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.35 E-value=0.0021 Score=38.40 Aligned_cols=67 Identities=13% Similarity=0.291 Sum_probs=53.2
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCC-CCCceeEE--ECCeecC-CCCcccccccCCCCEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI-PPVQQRLI--YAGKQLA-DDKTARDYNIEGGSVL 143 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i-~~~~~~l~--~~g~~l~-d~~~L~~~~i~~~~~i 143 (154)
..|.|+.++|+.+.-.++.++||++|.+-+....+- ....+.|. |..+.+. ++.||.+.|+.+...+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 467888899999999999999999999999876643 33556776 6777665 5789999999875544
No 124
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.33 E-value=0.0026 Score=36.97 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=53.0
Q ss_pred eecCCceEEEeeCCCchHHHHHHHHhhhcCC---CCC--ceeEEECCeecCCCCcccccccCCCCEEEE
Q 040824 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGI---PPV--QQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 82 ~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i---~~~--~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
+.-+|..+.++++...++..|-..+.+...+ +.+ ..+.+-+++.|.++..|.+|+|.+||.+.+
T Consensus 12 t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 12 TNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3457889999999999999998888776664 222 357778899999999999999999999876
No 125
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.26 E-value=0.0026 Score=37.93 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=53.1
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEecc---Cceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l 69 (154)
+|.|+..+|+...-..+.++|+.++.+.+....+-. ..-.|. |..+.+.+ +.+|.+.|+.+.+++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 578999999999999999999999999998665433 334454 66788864 46999999998887754
No 126
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=97.24 E-value=0.0049 Score=43.85 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=55.9
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCCCCC---CeEEE--Ecce---EeccCceecccccccccceeeeeeee---------
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------- 74 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~---~q~L~--~~g~---~L~d~~~l~~~~i~~~~~i~l~~~~~--------- 74 (154)
.+.+-++.+.||++|.+.+.++.+++.+ ..+|+ ++++ .+..+..+...+ +...+.+-.-+.
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l~--~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSLN--DYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhcc--CcceeeeecCChHHhhccccc
Confidence 4778899999999999999999998765 44444 4553 466677776652 222222221111
Q ss_pred -cceeeeeeec-------CCceEEEeeCCCchHHHHHHHHhhhcCCCC
Q 040824 75 -GGTMIKVKTL-------TGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (154)
Q Consensus 75 -~~~~i~v~~~-------~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~ 114 (154)
+.+.|.|... .|-.+.+.+.+.+|+.++|+.|++++|++-
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 1233444332 356688999999999999999999999874
No 127
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0023 Score=44.60 Aligned_cols=73 Identities=15% Similarity=0.253 Sum_probs=56.1
Q ss_pred EEEEEeCCC-CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-Ecc-----eEecc-Cceecccccccccceeeeeee
Q 040824 2 QIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLED-GRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 2 ~v~v~~~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g-----~~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (154)
+|.|.+... .....+++++.|+.+||.+++..+|.+++.+.|. |.| ..|+| +..|..|...+|-.||++-..
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 455554432 2355678899999999999999999999999997 554 34554 558999999999999887654
Q ss_pred e
Q 040824 74 R 74 (154)
Q Consensus 74 ~ 74 (154)
.
T Consensus 83 ~ 83 (234)
T KOG3206|consen 83 A 83 (234)
T ss_pred c
Confidence 3
No 128
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.21 E-value=0.00062 Score=48.73 Aligned_cols=70 Identities=29% Similarity=0.387 Sum_probs=52.8
Q ss_pred CEEEEEeCCCCE-EE-EEEeCCCcHHHHHHHHHhH-hCCCCCCeEEE--E--cceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKT-IT-LEVESSDTIDNVKAKIQDK-EGIPPDQQRLI--F--AGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~-~~-~~v~~~~tv~~lk~~i~~~-~~~~~~~q~L~--~--~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|.|++.++++.. .. ..++...|+.|++.++.++ ....+.++++. . .|+.|.|+.+|++|+..+++++.+.
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 788998877633 33 5667788999999777655 45777555554 3 4899999999999999999877543
No 129
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.18 E-value=0.0014 Score=40.70 Aligned_cols=48 Identities=29% Similarity=0.401 Sum_probs=38.4
Q ss_pred EEEeeC--CCchHHHHHHHHhhhcC--CCCCceeEEECCeecCCCCcccccc
Q 040824 89 IEIDIE--PTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYN 136 (154)
Q Consensus 89 ~~~~v~--~~~tv~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~ 136 (154)
..++++ .+.|+..||++|.+..+ ..-.+++|+|+|+.|.|...|...-
T Consensus 14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 455555 78999999999999884 4566679999999999888766543
No 130
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00075 Score=47.07 Aligned_cols=63 Identities=29% Similarity=0.448 Sum_probs=56.8
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
.++.+.+.....+|+.++|.+++...++.+..|+++|+|..+-+...|..+.+..+....+..
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 467788999999999999999999999999999999999999999999999999997665443
No 131
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=97.13 E-value=0.0058 Score=44.53 Aligned_cols=106 Identities=17% Similarity=0.353 Sum_probs=73.6
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc------eEeccCceecccccccccceeeeeeee--------------
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLR-------------- 74 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g------~~L~d~~~l~~~~i~~~~~i~l~~~~~-------------- 74 (154)
+-++.+++|+++-..+.+..|.|++...++|.- ..++.+.++....+.+|+.|.+-....
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 568899999999999999999999887777752 457888899999999999987666432
Q ss_pred ------cceeeeeeec---CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 75 ------GGTMIKVKTL---TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 75 ------~~~~i~v~~~---~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
..+.|.++.. ....+.+.++...|-.+|-++|+++.+++|+..+|.
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1245555442 334788999999999999999999999999999987
No 132
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.0015 Score=45.63 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=56.4
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.++.+.+....-+|+.++|.++.+..++++.-|+|+++|..+.+...|.+++++.|+...+.+
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 456788889999999999999999999999999999999999999999999999996554443
No 133
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.10 E-value=0.0042 Score=37.07 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=50.4
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCC-CCCCeEEE--EcceEecc-Cceeccccccccc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES 65 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~-~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~ 65 (154)
+|.|+..+|+.+.-+++.++||.+|.+-+....+- ....-.|. |..+.+.+ +.||.+.|+.+..
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 57899999999999999999999999999987542 22344554 66777765 5699999988644
No 134
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.10 E-value=0.0057 Score=36.72 Aligned_cols=67 Identities=16% Similarity=0.363 Sum_probs=55.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEecc---Cceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l 69 (154)
+|.|+.++|+...-+...++++.+|-..+.. .+.+++.-.|+ |-.+.+.. +.+|.+.|+.+.+++.+
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfV 78 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 78 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEE
Confidence 5889999999999999999999999998887 46777777777 66777643 46999999998888754
No 135
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.09 E-value=0.0036 Score=37.06 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=50.1
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEecc---Cceecccccccccce
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTL 67 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i 67 (154)
+|.|+..+|+.+.-+.+.++|+.+|.+-+.....- ...-.|. |..+.+.+ +.+|.+.|+.+.+.+
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~ 73 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF 73 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence 57899999999999999999999999999876543 3344454 56677754 669999999854433
No 136
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.91 E-value=0.0091 Score=40.35 Aligned_cols=62 Identities=23% Similarity=0.423 Sum_probs=47.6
Q ss_pred CEEEEEeCCC----CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCe-EEEE-cceEe--ccCceecccccc
Q 040824 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQ 62 (154)
Q Consensus 1 m~v~v~~~~~----~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q-~L~~-~g~~L--~d~~~l~~~~i~ 62 (154)
|+|.|.+.+| .++.+.++.++||.+|+..+....+.++..| .|.+ .++.+ .++..++.+.-.
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~ 70 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSS 70 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccC
Confidence 7899999999 5788999999999999999999999998885 3444 34454 344456655543
No 137
>PRK06437 hypothetical protein; Provisional
Probab=96.91 E-value=0.015 Score=33.50 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=45.7
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.++...++++...|+++|-+. .++++...-+..+|..+. .++-+++||.|.++--.-||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 344567788888999998654 488888888889999886 66688999999877655554
No 138
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.87 E-value=0.0029 Score=45.42 Aligned_cols=73 Identities=25% Similarity=0.383 Sum_probs=49.3
Q ss_pred eeeeeeecCCc-eE-EEeeCCCchHHHHHHHHhhh-cCCCCCceeEE----ECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 77 TMIKVKTLTGK-EI-EIDIEPTDTIERIKERVEEK-EGIPPVQQRLI----YAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~~~-~~-~~~v~~~~tv~~LK~~i~~~-~~i~~~~~~l~----~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|.|++...++. .. ....+.++|+.|+++.+.++ ..+.+..+++. -+|+++-|+.+|++|+..+|++|+ ++-
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~--vKD 78 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIY--VKD 78 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEE--Eec
Confidence 34555554442 22 35677889999999777554 45666444333 468999999999999999997764 444
Q ss_pred cC
Q 040824 150 RG 151 (154)
Q Consensus 150 ~g 151 (154)
+|
T Consensus 79 LG 80 (297)
T KOG1639|consen 79 LG 80 (297)
T ss_pred cC
Confidence 44
No 139
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.78 E-value=0.012 Score=35.60 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=52.8
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEec--------cCceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~--------d~~~l~~~~i~~~~~i~l 69 (154)
+|.|+.++|+.+.-+...++|+.+|.+-+.. .+..+..-.|. |..+.+. .+.||.+.|+.+.+++.+
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 6889999999999999999999999999964 44555666666 5567775 356999999987776644
No 140
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0063 Score=42.48 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=50.8
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECC-----eec-CCCCcccccccCCCCEEEEEEe
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAG-----KQL-ADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g-----~~l-~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.....+++.|++++|.++...+|.+++.+.|. |+| ..| +++..|..|...+|..||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 45678899999999999999999999999887 655 234 4778999999999999998744
No 141
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.69 E-value=0.016 Score=34.69 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=54.7
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEec---cCceecccccccccceee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l 69 (154)
+|.|+.++|+...-+...++++++|-.-+... +.++..-+|. |-.+.+. .+.+|.+.|+.+.+++.+
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V 77 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL 77 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence 68899999999999999999999999999764 6666667776 6677774 355999999988887754
No 142
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=96.64 E-value=0.014 Score=34.49 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=46.9
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCC----CCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGI----PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i----~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...++++...|+.+|.+.+...++- ......+..+|+... .+.-+++||.|.++-..-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3567888889999999999887653 344567778998876 45578999999888877776
No 143
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=96.58 E-value=0.022 Score=33.67 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=50.3
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCC-CCceeEEE----CC--eecCCCCcccccccCCCC--EEEEEE
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIY----AG--KQLADDKTARDYNIEGGS--VLHLVL 147 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~-~~~~~l~~----~g--~~l~d~~~L~~~~i~~~~--~i~~~~ 147 (154)
|+.++|+...+.+++++|+.+|-..|+...++. .+-+-|.+ +| ..|+.+++|.++....+. ++++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence 456788899999999999999999999999984 44457777 22 367888999999877333 444433
No 144
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=96.49 E-value=0.0079 Score=35.62 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=46.9
Q ss_pred eCCCchHHHHHHHHhhhcC-CCCCceeEEECCeecCCCCccccc-ccCCCCEEEEEE
Q 040824 93 IEPTDTIERIKERVEEKEG-IPPVQQRLIYAGKQLADDKTARDY-NIEGGSVLHLVL 147 (154)
Q Consensus 93 v~~~~tv~~LK~~i~~~~~-i~~~~~~l~~~g~~l~d~~~L~~~-~i~~~~~i~~~~ 147 (154)
|.++++|.++++.+..... .....+.|.++|..|++...|+++ |+++|+.+.+.-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 5678999999999987765 567788999999999999999888 588899988764
No 145
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=96.45 E-value=0.024 Score=31.99 Aligned_cols=67 Identities=21% Similarity=0.405 Sum_probs=52.6
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcC---CCCCceeEE-ECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEG---IPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~---i~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
+|+...++-+.+...--..++.-+.+| -|+++..|. -.|..++-++.+++||+.+|-++++.++...
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAGv 74 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAGV 74 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeeccc
Confidence 577777777777777666666655554 688888776 6788999999999999999999888777643
No 146
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.40 E-value=0.055 Score=31.40 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=43.3
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...+++++..|+.+|-+.+ ++++....+..+|..+.. +.-+++||.|.++-..-||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 4567888889999998765 677777777899998853 5568999999887666555
No 147
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=96.37 E-value=0.00088 Score=49.55 Aligned_cols=77 Identities=22% Similarity=0.474 Sum_probs=0.0
Q ss_pred eeeeeeecCCceEEEee--C---CCchHHHHHHHHhh----------hcCCCCCcee-----EEECCeecCCCCcccccc
Q 040824 77 TMIKVKTLTGKEIEIDI--E---PTDTIERIKERVEE----------KEGIPPVQQR-----LIYAGKQLADDKTARDYN 136 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v--~---~~~tv~~LK~~i~~----------~~~i~~~~~~-----l~~~g~~l~d~~~L~~~~ 136 (154)
+.|.++......+.+.+ . .+.+|.++|..+++ .+++|.+.++ |+|+-+++.|++||.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 34445554444433332 1 25889999999999 8899999999 999999999999988875
Q ss_pred cC-------CCCEEEEEEeecCCC
Q 040824 137 IE-------GGSVLHLVLALRGGG 153 (154)
Q Consensus 137 i~-------~~~~i~~~~~~~gg~ 153 (154)
-. .+.++++.+...||+
T Consensus 159 ~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 159 ADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp ------------------------
T ss_pred hcccchhccCCceEEEEEEEECCc
Confidence 44 578888888888884
No 148
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.26 E-value=0.05 Score=30.99 Aligned_cols=60 Identities=12% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+.. ..-.+.-+++||.|.++-...||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 5666555 3 45899888765 566666667788987763 23456678999999887777665
No 149
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0016 Score=48.58 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=53.8
Q ss_pred EEEEEeCCCCE--EEEEEeCCCcHHHHHHHHHhHhC--CCCCCeEEEEcceEeccCceeccccccc--ccceeeeeee
Q 040824 2 QIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVLRL 73 (154)
Q Consensus 2 ~v~v~~~~~~~--~~~~v~~~~tv~~lk~~i~~~~~--~~~~~q~L~~~g~~L~d~~~l~~~~i~~--~~~i~l~~~~ 73 (154)
.+.+|..+.+. +.+..+..+||++||..++...- --+.+|+|+|.|+.|.|+..+.+.=.+. ...+||++..
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 46778887755 55666778999999999998763 4466899999999999999988876533 2355555543
No 150
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.21 E-value=0.021 Score=34.61 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=48.8
Q ss_pred eeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC---CceeEEECC---e--ecCCCCccccc----ccCCCCEEEEEE
Q 040824 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP---VQQRLIYAG---K--QLADDKTARDY----NIEGGSVLHLVL 147 (154)
Q Consensus 80 ~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~---~~~~l~~~g---~--~l~d~~~L~~~----~i~~~~~i~~~~ 147 (154)
..+.+.|+.+.+.+.+++.+.+|++.|+++.|... ....|.|-. . .|..+.-|.++ ......+|.+.+
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~v 83 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLHL 83 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEEEE
Confidence 45677899999999999999999999999999876 577888743 2 23333344444 234445555555
Q ss_pred e
Q 040824 148 A 148 (154)
Q Consensus 148 ~ 148 (154)
+
T Consensus 84 ~ 84 (86)
T cd06409 84 H 84 (86)
T ss_pred e
Confidence 4
No 151
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.96 E-value=0.05 Score=32.67 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEEECCe-----ecCCCCcccc----cccCCCCEEEEEEe
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIYAGK-----QLADDKTARD----YNIEGGSVLHLVLA 148 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~~~g~-----~l~d~~~L~~----~~i~~~~~i~~~~~ 148 (154)
++..+.+.++++.+..+|++.+++++++.. ..+.|.|... .+..+.-|.+ |.....++|.++++
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 567889999999999999999999999865 6778887543 2334444555 45566778877765
No 152
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.88 E-value=0.043 Score=32.67 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=37.2
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g 47 (154)
|+|.+. + ++.++++++.+..+|.++|.++.++|++...|.|..
T Consensus 5 vKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 5 VKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 456654 2 888999999999999999999999999999998864
No 153
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.74 E-value=0.075 Score=31.66 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=35.1
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCee
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ 125 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~ 125 (154)
++.+++++..+..+|..+|+++.++|++..+|.|+...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 88899999999999999999999999999999997653
No 154
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=95.70 E-value=0.063 Score=32.19 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=43.5
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
+...++-.++++.||..++++.+++.+...+...+..|+++++|-+.+++-...+.+.+-.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 4456677889999999999999999999999888878999999999999888888776544
No 155
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=95.65 E-value=0.084 Score=30.05 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=42.4
Q ss_pred EeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
++++...|+.+|.+.+ ++++....+..+|+.+..+ .-.+.-+++||.|.++-..-||
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4556778999998765 4677888888999887643 2334568999999888777666
No 156
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.63 E-value=0.11 Score=31.19 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=36.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC-CCeEEEEc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA 46 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~-~~q~L~~~ 46 (154)
|+|++.. +|..+.+.++++.+..+|++.|.+++++.. ..-.|.|-
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 4566665 667899999999999999999999999865 55566553
No 157
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=95.60 E-value=0.18 Score=29.72 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=46.0
Q ss_pred EEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCC-CCCeEEEE----c--ceEeccCceecccccc
Q 040824 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF----A--GKQLEDGRTLADYNIQ 62 (154)
Q Consensus 5 v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~-~~~q~L~~----~--g~~L~d~~~l~~~~i~ 62 (154)
|+.++|....++++.++|+.++-+.|.++.++. .+.--|.+ + ...|+.+.++.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 567899999999999999999999999999965 33345556 1 2678888888888766
No 158
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.59 E-value=0.082 Score=32.01 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=34.1
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
..+++.+.|+.+.+.+.+++.+.+|++.|.++.+...
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~ 38 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDD 38 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc
Confidence 4678889999999999999999999999999999886
No 159
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=95.50 E-value=0.11 Score=29.45 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=43.6
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. ++++...|+.+|.+.+ +++++...+..+|..+..+ .-.++-+++||.|.++-..-||
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 4544 4556678899988754 5667777788999887532 2344578999999888777665
No 160
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=95.47 E-value=0.16 Score=30.06 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=44.9
Q ss_pred eEEEeeCCC-chHHHHHHHHhhhcC-C--CCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPT-DTIERIKERVEEKEG-I--PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~-~tv~~LK~~i~~~~~-i--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...++++.. .|+.+|...+.+.++ + ......+..+++...+ +.-+++||.|.++-+.-||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 356788876 899999999998875 1 1233566678887764 4678999999888777766
No 161
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.45 E-value=0.096 Score=31.23 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=42.8
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhcC-CCC--CceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKEG-IPP--VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~~-i~~--~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
....++++...|+.+|.+.+...+. +.. ....+..+++... .+.-+++||+|.++-..-||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 3456778888999999999977652 111 1234567887764 34467899999888777666
No 162
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=95.32 E-value=0.17 Score=30.74 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=42.5
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-c---c-eEe-ccCceecccccccccceeeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-A---G-KQL-EDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~---g-~~L-~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
..+...++..+||+.+...+.+.+.+ +..-+|+- . + ..| +.+.|+.+.++.+|..|.+-.+.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeec
Confidence 45778899999999999999999999 66677763 2 2 335 45679999999999877555443
No 163
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0083 Score=44.88 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=47.4
Q ss_pred ceeeeeeecCC--ceEEEeeCCCchHHHHHHHHhhhcCC--CCCceeEEECCeecCCCCccccc
Q 040824 76 GTMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 76 ~~~i~v~~~~~--~~~~~~v~~~~tv~~LK~~i~~~~~i--~~~~~~l~~~g~~l~d~~~L~~~ 135 (154)
+..++++..+. +...+..+...||++||..++..+.= -+.+|||+|.|+.|.|...|.+.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 34566666654 45678888899999999999988863 24578999999999998888765
No 164
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.28 E-value=0.094 Score=30.62 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=49.8
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCC--CCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...+.+....|+.+|.+.+...++- ......+..+|+.+.+ .-.+.-+++||.|.++-..-||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5567889999999999999887742 3366788899998877 3566778999999887766665
No 165
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=95.23 E-value=0.25 Score=29.75 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=44.2
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCC------C-----CCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGI------P-----PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i------~-----~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...++++ ..|+.+|.+.+.+.++- . .....+..+|+....+.. .-+++||.|.++-..-||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4566776 88999999999888741 1 123667788887764432 568999999888777766
No 166
>PRK06437 hypothetical protein; Provisional
Probab=94.93 E-value=0.34 Score=27.84 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=44.0
Q ss_pred EEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 4 ~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
+++-.+++...++++.+.|+.+|-+. .++++...-+..+|..+. .++-+++++.|.+..
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 34443556688888889999998766 478888888888999886 455677788886654
No 167
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.93 E-value=0.11 Score=31.16 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=41.4
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
....++-..+++.||..++.+.+++-+.-.++..+..|+++++|.+-+++....+.+.+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnv 63 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNV 63 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEE
Confidence 44567778899999999999999998888898888779999999999998777775543
No 168
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.79 E-value=0.25 Score=29.23 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=36.6
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~ 46 (154)
+++++. ++..+.+.++.+.|..+|+.+|.++++.+.....|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 466666 66788999999999999999999999987766777664
No 169
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.65 E-value=0.15 Score=29.65 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=38.7
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
+..++|+...+.+.|..|+.++-..++++.|+.++...+...|
T Consensus 4 v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 4 VHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4456889999999999999999999999999999999998755
No 170
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=94.46 E-value=0.16 Score=29.75 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=38.8
Q ss_pred eeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 80 ~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
.|..++|+...+.+.+..|+.++-.+++++.|+.++..-+...|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45567899999999999999999999999999999999887654
No 171
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.37 E-value=0.27 Score=28.00 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=42.8
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+.+ ++++..|+.+|-.. .++++...-+.+++..+..+.- ..+ +++||.|.++-...||
T Consensus 6 NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeeccCC
Confidence 55544 44567788887653 5788888899999997764332 235 8999999887766655
No 172
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=94.19 E-value=0.46 Score=28.78 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=34.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~ 46 (154)
|+|+|.. +|....+.++++.+..+|.++|..++++. ....+.|.
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKyk 46 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMK 46 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEE
Confidence 3455554 67789999999999999999999999985 34455453
No 173
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.17 E-value=0.66 Score=28.20 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=44.0
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE-C---C-eec-CCCCcccccccCCCCEEEEEEeecCC
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-A---G-KQL-ADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~-~---g-~~l-~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..+...++..+||..+...+++.+.+ .+..||-- . + ..| +.+.|+.+.|+.+|..|.+=.+-.-|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 45677899999999999999999999 66677742 1 2 245 45679999999999988766554333
No 174
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.14 E-value=0.33 Score=28.67 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=37.1
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~ 124 (154)
+.+.. ++....+.++++.|..+|+.+|+.+++.+.....|.|...
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 34444 5677889999999999999999999999888888888753
No 175
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=94.02 E-value=0.78 Score=31.85 Aligned_cols=73 Identities=25% Similarity=0.297 Sum_probs=51.5
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEEEC---C---eecCCCCcccccccC-CCCEEEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIYA---G---KQLADDKTARDYNIE-GGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~~~---g---~~l~d~~~L~~~~i~-~~~~i~~~~ 147 (154)
++.+.|...+|+...+.+++++|+.++...++.+.|++. ..+-|.+. + ..++...++.+.... ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 456778888999999999999999999999999999853 22344421 1 346666677776654 334555444
Q ss_pred e
Q 040824 148 A 148 (154)
Q Consensus 148 ~ 148 (154)
+
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 4
No 176
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.83 E-value=0.085 Score=31.20 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=43.6
Q ss_pred EeCCCcHHHHHHHHHhHhC-CCCCCeEEEEcceEeccCceecccc-cccccceeeeeeee
Q 040824 17 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRLR 74 (154)
Q Consensus 17 v~~~~tv~~lk~~i~~~~~-~~~~~q~L~~~g~~L~d~~~l~~~~-i~~~~~i~l~~~~~ 74 (154)
++++++|.++++.+..... ..-..-.|.++|+.|++...++++. +++++.+.+...+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence 4578899999999876643 3344556778999999888888876 77788887776554
No 177
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=93.50 E-value=0.67 Score=26.25 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=43.8
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. +++++..|+.++-.. .++++...-+..+|..+... .-.+.-+++||.|.++-..-||
T Consensus 6 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 5554 456677888888654 57888888888999877633 2344568999999888776665
No 178
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=93.42 E-value=0.49 Score=26.80 Aligned_cols=65 Identities=23% Similarity=0.473 Sum_probs=50.7
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhC---CCCCCeEEE-EcceEeccCceecccccccccceeeeeee
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~---~~~~~q~L~-~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
+|+...++.+.+++..-..++--+.++ -|++.=.|. -+|..++-++.+.+||+.++-++.+.++.
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 678888899999988888777655543 566665555 35889999999999999999988777654
No 179
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=93.18 E-value=0.86 Score=25.66 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=40.1
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. +++++..|+.+|.+.+. ++ ....+..+|..+..+. -.+.-+++||.|.++-...||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 4554 45567789999988663 33 3456678888765321 234458899999888777665
No 180
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.18 Score=38.01 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=45.4
Q ss_pred EeeCCCchHHHHHHHHhhhcCCCCCceeEEE---CCe-----ecCCCCcccccccCCCCEEEEE
Q 040824 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIY---AGK-----QLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~---~g~-----~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.-+.-.-||.+++..+..+.|+.+.+++|++ .|+ ...-+..|.+|+|++||.+.+-
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3445567999999999999999999999985 233 3456778999999999998654
No 181
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=93.07 E-value=0.94 Score=25.77 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=42.4
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. +++.+..|+.+|.+.+ +.+.....+-.++..+..+ .-++.-+++||.|.++-..-||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQP--MQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 5554 4456678899888653 5555667777899887532 2344468999999888777665
No 182
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=92.99 E-value=0.78 Score=27.66 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. .++++..|+.+|-+. .++++...-+-.+|..+.- ..-++.-+++||.|+++--..||
T Consensus 24 NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 5664 455677788888664 4778888888899998853 34566679999999888776665
No 183
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=92.97 E-value=1 Score=25.83 Aligned_cols=61 Identities=16% Similarity=0.269 Sum_probs=43.0
Q ss_pred CCceEEEeeCCC-chHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPT-DTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~-~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+.+ +++.. .|+.+|-+ ..++++...-+-.++..+..+ .-++.-+++||.|+++--..||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 55544 45554 57887765 457788888888999988643 3455678999999887766655
No 184
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=92.73 E-value=1 Score=27.28 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=40.3
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccc
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARD 134 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~ 134 (154)
+.+.+.. +|-...+.++++.+..+|..+|..++++. ..+++-|... .|-.|+.+
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 3444543 56688999999999999999999999995 5667777665 44444443
No 185
>PRK07440 hypothetical protein; Provisional
Probab=92.66 E-value=1.1 Score=25.92 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=44.5
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. .++....|+.+|-+ ..++++...-+-.+|..+.-+ .-.+.-+++||.|.++--..||
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 5554 55667788888865 446788888888999888632 3455678999999887766665
No 186
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.64 E-value=0.2 Score=38.07 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=60.9
Q ss_pred CEEEEEeC--CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccC--ceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~--~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~--~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|.++|-.. ....+++.+..+-....++..++...+++.+..-|+|+++.+..+ ..+.++|++.++.+.+-.+..+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 44444333 456788999999999999999999999999999999999998765 4899999999998877665443
No 187
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=92.54 E-value=0.69 Score=27.01 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.6
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g 47 (154)
++|..++|+.-.+.+.+++|+.++-+.+-++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 567788999999999999999999999999999999988888654
No 188
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.49 Score=34.72 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=55.7
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC---CCCcccccccCCCCEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLH 144 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~ 144 (154)
.-.|.|+.++|+++...+++.+++..++.-+.-+.+...+...|+ |.-..+. -.++|..+++.+.+++.
T Consensus 210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLI 283 (290)
T ss_pred ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchhee
Confidence 456778888999999999999999999999999999887777765 3333332 45689999998888764
No 189
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=92.27 E-value=0.26 Score=37.54 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=52.9
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCC--CCcccccccCCCCEEEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLAD--DKTARDYNIEGGSVLHL 145 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d--~~~L~~~~i~~~~~i~~ 145 (154)
....+++.+........|+..+...+|++.+..-++|+++++.+ .+.+..+|+.+++.+.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 34567788888889999999999999999999999999998874 57899999999998754
No 190
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.16 E-value=0.92 Score=26.53 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=39.4
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCC----CCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~----~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
....++++.+.|+.+|.+.+....+- ......+..||+... .+.-+++++.|.+....
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv 77 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPV 77 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCC
Confidence 34567777789999999999877532 223445556777765 34567888888766543
No 191
>smart00455 RBD Raf-like Ras-binding domain.
Probab=92.06 E-value=0.92 Score=26.29 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=40.5
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g 47 (154)
.+|-.++|+.-.+.+.++.|+.|+-+.+-++.|+.++.-.+++.|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456778999999999999999999999999999999988888755
No 192
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=92.05 E-value=1.1 Score=26.44 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=34.7
Q ss_pred eeeeecCCceEE-EeeCCCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 79 IKVKTLTGKEIE-IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 79 i~v~~~~~~~~~-~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
+.+.. .+.... +.+..+.|..+|+.++++.++.+....++.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34444 334444 889999999999999999999998888888854
No 193
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=92.01 E-value=0.72 Score=26.80 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=38.3
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC--eecCCCC
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG--KQLADDK 130 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g--~~l~d~~ 130 (154)
+.|.-++|+...+.+.+..|+.+.-..++++.++.++...+...| +.++-++
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 345567899999999999999999999999999999988776443 3555433
No 194
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=91.70 E-value=0.051 Score=40.47 Aligned_cols=61 Identities=20% Similarity=0.472 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEe---C--CCcHHHHHHHHHh----------HhCCCCCCeE-----EEEcceEeccCceeccccc
Q 040824 2 QIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNI 61 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~---~--~~tv~~lk~~i~~----------~~~~~~~~q~-----L~~~g~~L~d~~~l~~~~i 61 (154)
.|++|...+..+.+.+. + +.+|.++|..+.+ ..++|.+..+ |+|+.+.+.|..+|++..-
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 45666666555555442 2 5789999999999 8889988888 9999999988888888764
Q ss_pred c
Q 040824 62 Q 62 (154)
Q Consensus 62 ~ 62 (154)
.
T Consensus 160 ~ 160 (309)
T PF12754_consen 160 D 160 (309)
T ss_dssp -
T ss_pred c
Confidence 3
No 195
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.33 E-value=1.8 Score=24.99 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=36.8
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
...++++.+.|+.+|-+.+ ++++....+..+|..... +.-+++++.|.+..
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~ 65 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP 65 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc
Confidence 4677888889999988775 666666666688888753 44567788876654
No 196
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=91.08 E-value=0.78 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=32.7
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~ 46 (154)
-++.+.+.+..+..+|..+|.++...+++...|.|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 357788899999999999999999999999999885
No 197
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=91.07 E-value=1.9 Score=25.25 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEEEEeCCCCEEEEEEe-CCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 2 QIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~-~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
.|+++. +|..+.+.++ .+.+..+|+++|.++++.+...-.+.|
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 466666 4577888888 899999999999999998754444444
No 198
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.95 E-value=0.62 Score=35.85 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=52.2
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhC-CCCCCeEEE--EcceEeccC-ceecccccccccce
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDG-RTLADYNIQKESTL 67 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~-~~~~~q~L~--~~g~~L~d~-~~l~~~~i~~~~~i 67 (154)
.|.|+..+|......++.+-||.+++..|..... .+...+.|. |--+.|.|+ .||.+-|+.+...+
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 3678888999999999999999999999998876 444466666 667888764 49999998765543
No 199
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=90.88 E-value=1.1 Score=26.20 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCceEEEeeC-CCchHHHHHHHHhhhcCCCCCceeEEECCe
Q 040824 85 TGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 85 ~~~~~~~~v~-~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~ 124 (154)
+|....+.++ .+.|..+|++++++.++.+.....+.|...
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 3557788888 899999999999999999877777777653
No 200
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.85 E-value=1.7 Score=24.11 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=35.3
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
++++..+.|+.+||+++... .-.++++|-...++. -+++||.|.++-
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~-----~L~e~D~v~~Ik 55 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKEDI-----ELKEGDEVFLIK 55 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCcc-----ccCCCCEEEEEe
Confidence 46778888999999988753 335789998877665 567788886654
No 201
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=90.78 E-value=1.5 Score=25.92 Aligned_cols=44 Identities=20% Similarity=0.382 Sum_probs=34.7
Q ss_pred EEEEEeCCCCEEE-EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc
Q 040824 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 2 ~v~v~~~~~~~~~-~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~ 46 (154)
.|++... +.... +.+..+.+..+|+.+|+..++.+.....|.|.
T Consensus 3 ~vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 3 RVKVRYG-GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEET-TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEEC-CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 4556654 44444 89999999999999999999998777777774
No 202
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=90.75 E-value=2 Score=24.74 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=43.5
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+++++...|+.+|-+ ..+++++..-...+|..+..+. -++.-+++||.|.++--.-||
T Consensus 11 ~~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~~-~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 11 EVEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRSQ-WADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccchh-hhhccccCCCEEEEEEeecCC
Confidence 456677789999865 5578888888889999887432 455677899999887666555
No 203
>KOG4261 consensus Talin [Cytoskeleton]
Probab=90.68 E-value=1.7 Score=36.66 Aligned_cols=101 Identities=24% Similarity=0.315 Sum_probs=78.5
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCC---CCCCeEEEE------cceEeccCceecccccccccceeeeeeeecceeee
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGI---PPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~---~~~~q~L~~------~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
+-..++.+.|++.|.+-...|++++.. -+..-.|+. .|-++++..++.+|-+.+++++...-+ .-.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k---~r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRK---QRPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhh---cccce
Confidence 444678899999999999999888642 244444442 267789999999999999998843332 23467
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCC
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~ 113 (154)
++..+|..-++.++.+.+|.+|.--|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 778889888999999999999999999999973
No 204
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=90.67 E-value=1.4 Score=35.08 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=53.4
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCC------CCCceeEE-ECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI------PPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i------~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
+++|...+ +...+-++.+..+.+|--.+-+..+- .+....|. ..|.+++.++||.+.|+.||+.+++.-.
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 35555533 45788899999999999998887764 22334554 5788999999999999999999987653
No 205
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.54 E-value=1.6 Score=24.30 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=32.5
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
..+++..+.|+.+||..+.... =.++++|-..+++..|+ +++.+.+.
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~~L~-----e~D~v~~I 54 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPDA------DIVILNGFPTKEDIELK-----EGDEVFLI 54 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCccccC-----CCCEEEEE
Confidence 3567778889999998865532 25678888777666554 46666554
No 206
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.08 E-value=1.7 Score=25.77 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=40.9
Q ss_pred CEEEEEeCC------C-CEEEEEEeCCCcHHHHHHHHHhHhC-CCC--CCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~------~-~~~~~~v~~~~tv~~lk~~i~~~~~-~~~--~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|+.-. | ....++++.+.|+.+|.+.+..... ... ....+..|++... .+.-++++++|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 556666542 3 4567788889999999999976541 111 1123445666653 33456778888665
Q ss_pred ee
Q 040824 71 LR 72 (154)
Q Consensus 71 ~~ 72 (154)
..
T Consensus 77 Pp 78 (82)
T PLN02799 77 PP 78 (82)
T ss_pred CC
Confidence 43
No 207
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=90.08 E-value=1.8 Score=25.86 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=29.0
Q ss_pred CCceEEEeeCC--CchHHHHHHHHhhhcCCCCCceeEEE
Q 040824 85 TGKEIEIDIEP--TDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 85 ~~~~~~~~v~~--~~tv~~LK~~i~~~~~i~~~~~~l~~ 121 (154)
+|.+..+.+++ +.+..+|++.++..++++ .+.+-|
T Consensus 8 ~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 8 NGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 66788888988 779999999999999999 554444
No 208
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=89.92 E-value=1.4 Score=34.29 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=51.7
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcC--CCCCceeEEEC----Cee--cCCCCcccccccCCCCEEEEEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYA----GKQ--LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~--i~~~~~~l~~~----g~~--l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.+.++...| ...+++.++++.+.|-.++-.... .+|++..+.-+ |.. +..++|+.+.|+..|+.+++-.
T Consensus 2 i~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 455566555 568999999999999888866654 57778777643 221 3456899999999999998865
No 209
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=89.81 E-value=0.97 Score=29.13 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=38.5
Q ss_pred eCC-CchHHHHHHHHhhhcC----CCC------CceeEEEC----------------C-eec---CCCCcccccccCCCC
Q 040824 93 IEP-TDTIERIKERVEEKEG----IPP------VQQRLIYA----------------G-KQL---ADDKTARDYNIEGGS 141 (154)
Q Consensus 93 v~~-~~tv~~LK~~i~~~~~----i~~------~~~~l~~~----------------g-~~l---~d~~~L~~~~i~~~~ 141 (154)
++. +.|+.+|++.+.+... ++| +.+++... . ..| +++.+|.++|+.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 8899999888876653 332 33444421 1 356 678899999999999
Q ss_pred EEEEEE
Q 040824 142 VLHLVL 147 (154)
Q Consensus 142 ~i~~~~ 147 (154)
.|-++.
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 987764
No 210
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=89.80 E-value=2.9 Score=25.02 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=29.6
Q ss_pred EEEEEeCCCCEEEEEEeC--CCcHHHHHHHHHhHhCCC
Q 040824 2 QIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~--~~tv~~lk~~i~~~~~~~ 37 (154)
+|++.. +|....+.+++ +.+..+|++.+...++++
T Consensus 2 ~vKaty-~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTY-NGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEE-CCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 455665 67888888888 779999999999999999
No 211
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=89.55 E-value=0.88 Score=28.01 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=35.4
Q ss_pred EeeCCCchHHHHHHHHhhhcCCCCCceeEEEC-Ce------e-cCCC--Ccc--cccccCCCCEEEEEEeecCC
Q 040824 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYA-GK------Q-LADD--KTA--RDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~-g~------~-l~d~--~~L--~~~~i~~~~~i~~~~~~~gg 152 (154)
+......||.+|-+.+++.+. ..+..++.. |+ . +++. ..+ .++-+++||.|.++-..-||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 444456799999999988773 223333321 11 1 1211 223 35678999999877665554
No 212
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=89.22 E-value=2.7 Score=25.74 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=43.3
Q ss_pred CCceEEEeeCC-----CchHHHHHHHHhhhcCCCC-CceeEEECCe-----ecCCCCccccc-----ccCCCCEEEEEEe
Q 040824 85 TGKEIEIDIEP-----TDTIERIKERVEEKEGIPP-VQQRLIYAGK-----QLADDKTARDY-----NIEGGSVLHLVLA 148 (154)
Q Consensus 85 ~~~~~~~~v~~-----~~tv~~LK~~i~~~~~i~~-~~~~l~~~g~-----~l~d~~~L~~~-----~i~~~~~i~~~~~ 148 (154)
++....|.++. +.+..+|+++|++.+.+++ ....|.|... .+.++.-|.++ .-+...++.+.+.
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 45566667664 6899999999999999987 6677777543 23444444433 2235677776665
Q ss_pred e
Q 040824 149 L 149 (154)
Q Consensus 149 ~ 149 (154)
.
T Consensus 88 ~ 88 (91)
T cd06398 88 V 88 (91)
T ss_pred E
Confidence 4
No 213
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=89.21 E-value=0.9 Score=29.29 Aligned_cols=56 Identities=20% Similarity=0.454 Sum_probs=38.5
Q ss_pred EEeC-CCcHHHHHHHHHhHhC----CCC------CCeEEEEc-----------------ceEe---ccCceecccccccc
Q 040824 16 EVES-SDTIDNVKAKIQDKEG----IPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKE 64 (154)
Q Consensus 16 ~v~~-~~tv~~lk~~i~~~~~----~~~------~~q~L~~~-----------------g~~L---~d~~~l~~~~i~~~ 64 (154)
.++. ++|+.+|++.+.+... ++| +..++++. ...| +++.+|.++|+.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4776 8899999999987743 433 22333322 1567 67778999999888
Q ss_pred cceeeee
Q 040824 65 STLHLVL 71 (154)
Q Consensus 65 ~~i~l~~ 71 (154)
..|.+..
T Consensus 101 TEiSfF~ 107 (122)
T PF10209_consen 101 TEISFFN 107 (122)
T ss_pred ceeeeeC
Confidence 8886654
No 214
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=88.91 E-value=3.3 Score=24.49 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=34.3
Q ss_pred CchHHHHHHHHhhhcC-----CCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 96 TDTIERIKERVEEKEG-----IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 96 ~~tv~~LK~~i~~~~~-----i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..||.+|++.+.+++. ......+...++..... +.-+++||.|-++-+.-||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 4799999999988863 12223344455544332 3468999999877776665
No 215
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=88.83 E-value=2.5 Score=25.55 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=40.7
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-------ceEeccCceec
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 57 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-------g~~L~d~~~l~ 57 (154)
|+|-..+|....+.++..+|+.++.+.+..+.+...+.-.=++. .+.++|+..+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vv 66 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVV 66 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHH
Confidence 56677789999999999999999999999999876644433332 25566655433
No 216
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=88.39 E-value=1.3 Score=26.21 Aligned_cols=36 Identities=6% Similarity=0.148 Sum_probs=32.5
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
++.+.+.+..+.++|..+|+++...+++..+|-|..
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 566788999999999999999999999999999864
No 217
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=88.25 E-value=2.1 Score=25.17 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=35.5
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~ 122 (154)
|-.++|+...+.+.+.+|+.++-+..+++.++.|+..-|..+
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk 45 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLK 45 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEE
Confidence 345688888999999999999999999999999888755533
No 218
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=88.23 E-value=1 Score=34.70 Aligned_cols=67 Identities=16% Similarity=0.309 Sum_probs=52.3
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCC-CCCceeEE--ECCeecC-CCCcccccccCCCCEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI-PPVQQRLI--YAGKQLA-DDKTARDYNIEGGSVL 143 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i-~~~~~~l~--~~g~~l~-d~~~L~~~~i~~~~~i 143 (154)
-.|.|+..+|+..-..++.+.||.+++..|+..-.- +...+.|+ |..++|. ++.||++.|+.+...+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 467788888988888899999999999999876654 44455555 6678776 7789999999776544
No 219
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=87.99 E-value=2.5 Score=25.50 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=33.2
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCc
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ 116 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~ 116 (154)
.+.|...+|....+.|++.+|++++-+.++.+..+..+.
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 456667789999999999999999999999999975443
No 220
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=87.36 E-value=4.1 Score=23.77 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=52.0
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.++|+.+.....+-+-.++.+.+|+...-++ -.|-=++..++-...-++.|+.+.++-|-+-|
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 3678888888888888899999998887666 66777888999999999999999988776543
No 221
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=87.14 E-value=1.3 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=39.8
Q ss_pred EeeCCCchHHHHHHHHhhhcCCC-------CCceeEEECCe-ec------CCCCcccccccCCCCEEEEEE
Q 040824 91 IDIEPTDTIERIKERVEEKEGIP-------PVQQRLIYAGK-QL------ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~-------~~~~~l~~~g~-~l------~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+++++++|+.+|...+++...+. .+.-.|++.+- .| +-+++|.+. +.+|+.|.|.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 57899999999999999885432 33345555442 12 346789999 99999998753
No 222
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=86.71 E-value=4.4 Score=23.46 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=39.5
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc--eEeccCc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGR 54 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g--~~L~d~~ 54 (154)
+.|.-++|+.-.+.+.++.|+.+.-..+-++.++.++.-.++..| +.++.+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 567888999999999999999999999999999999887777544 4454443
No 223
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=86.51 E-value=5.1 Score=23.95 Aligned_cols=55 Identities=20% Similarity=0.387 Sum_probs=42.8
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
+..+...++...||.++-+ ..|+|.....++ .+|+..+-+ |-+++|+.|.+.-..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P~~ 77 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYPVF 77 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEecc
Confidence 4567889999999998854 679999998666 688877543 678899999887543
No 224
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=86.47 E-value=4.6 Score=23.47 Aligned_cols=57 Identities=21% Similarity=0.340 Sum_probs=44.6
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeecCCCCcccccccCCCCEEEEE
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
-++|+.+.....+-+-.++.+.+|+...-++ -.|--++..+|..+.-++.|+.+.++
T Consensus 19 v~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 19 VISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred EEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 4778888888888888899999999888777 45777889999999999999998764
No 225
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=86.33 E-value=3.6 Score=24.09 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=37.0
Q ss_pred ecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe
Q 040824 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 83 ~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~ 124 (154)
-++|+.-.+.+.+..|+.++-.++.++-|++++..-++.-|.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 458888899999999999999999999999999988875553
No 226
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=86.27 E-value=1 Score=29.11 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=37.0
Q ss_pred EE-eeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCccccc
Q 040824 90 EI-DIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~-~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~ 135 (154)
.+ -|+.+.||+++...|.++.+++++..-|..++.....+.++++.
T Consensus 43 KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 43 HFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 35 69999999999999999999999986555677666666677665
No 227
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=85.95 E-value=4.4 Score=22.81 Aligned_cols=56 Identities=11% Similarity=0.215 Sum_probs=36.2
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
+|+.+.+ +..|+.+|.+.+ ++++....+-.++..+. .....+.-+++|+.|.++..
T Consensus 6 Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQT---EATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEe
Confidence 5666665 345899988764 56665555557777664 33344566888898876643
No 228
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=85.75 E-value=4.3 Score=32.36 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=54.8
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCC----CCCCeEEE---EcceEeccCceecccccccccceeeeeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~----~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
+|+|... .+..++.++.+.++.|+.-.+-+..+- +.....+. -+|..|+.+.||.+.++.+|+.+++....
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 4667654 355788889999999999999888764 22233343 35789999999999999999999888643
No 229
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=85.67 E-value=3 Score=28.89 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=33.4
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCC
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~ 37 (154)
.+.|...+|....+.++..+|+.++.+.+..+.|++
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~ 40 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIR 40 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 578888999999999999999999999999999984
No 230
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=85.58 E-value=2.1 Score=25.97 Aligned_cols=42 Identities=10% Similarity=0.255 Sum_probs=36.1
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRL 119 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l 119 (154)
.+.|--++|....+++..+++..++-+.++++.|+|.+.+.-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 455666789999999999999999999999999999877643
No 231
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=85.49 E-value=5.7 Score=24.63 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=32.5
Q ss_pred EeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 6 ~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
+-.+|++.-+.|+.+.+..+|+.++.+..+.+.. ..|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 3457888999999999999999999999988875 55554
No 232
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=85.18 E-value=3 Score=34.83 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=37.8
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeec
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQL 126 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l 126 (154)
++..+.+.++++.|+..++..|...+|+|.+.|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 556788999999999999999999999999999999987643
No 233
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=85.16 E-value=4.9 Score=24.87 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=33.4
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEE
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLI 120 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~ 120 (154)
|.|-..++....+.++.+.||+++-..+++++.++. .+.+|.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 334445677788999999999999999999999865 566665
No 234
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=84.82 E-value=4.6 Score=24.03 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.0
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCC--CCceeEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIP--PVQQRLI 120 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~--~~~~~l~ 120 (154)
+....+.++.++|..++-+.+.++++++ +..+.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5667899999999999999999999986 6666665
No 235
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=84.80 E-value=5.1 Score=24.12 Aligned_cols=56 Identities=13% Similarity=0.219 Sum_probs=39.3
Q ss_pred EEEeCCCcHHHHHHHHHhHhCC-------CCCCeEEEEcce-------EeccCceecccccccccceeeee
Q 040824 15 LEVESSDTIDNVKAKIQDKEGI-------PPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~-------~~~~q~L~~~g~-------~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
+++++++|+.+|.+.+.+.-.+ ..+...|+..+- .-+-+++|++. +.+|..|.+.-
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD 70 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTD 70 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEEC
Confidence 5789999999999999887432 345556666541 12336688888 88888886643
No 236
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=84.60 E-value=6.5 Score=23.47 Aligned_cols=59 Identities=10% Similarity=0.244 Sum_probs=37.7
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhC-----CCC------CCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEG-----IPP------DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~-----~~~------~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
....++++ ..||.+|.+.+..... +-. ....+..+|+....+.. ..+++|+.|.+....
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~Ppv 85 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPV 85 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCC
Confidence 34567776 8899999999987753 101 12444567776654321 567888888766543
No 237
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=3.8 Score=30.25 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=52.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEecc---Cceeccccccccccee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLH 68 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~ 68 (154)
.+-|+..+|++...+++...++..++.-+.-..+..++.-.|. |..+.+.+ .++|...++.+.+++.
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLI 283 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchhee
Confidence 4678999999999999999999999999998888777665554 44555533 3478888888777664
No 238
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=84.47 E-value=2.2 Score=35.64 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=37.0
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEe
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L 50 (154)
++..+.+-++++.|+..++++|+..+|+|.+.|.|+|.|...
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 445678889999999999999999999999999999987553
No 239
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=84.42 E-value=4.7 Score=32.84 Aligned_cols=64 Identities=36% Similarity=0.529 Sum_probs=42.5
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHh--CCC------CCCeEEEE--c--ce-EeccCc-------------eecccccccc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDGR-------------TLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~--~~~------~~~q~L~~--~--g~-~L~d~~-------------~l~~~~i~~~ 64 (154)
..+++++-.-+||.++|++|-+.. +.| ++..-|-+ + |+ .|.|.. ||++|++.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 558899999999999999997663 333 33444432 2 22 465542 5999999999
Q ss_pred cceeeeeeee
Q 040824 65 STLHLVLRLR 74 (154)
Q Consensus 65 ~~i~l~~~~~ 74 (154)
+++.++.+..
T Consensus 282 a~vaLv~k~~ 291 (539)
T PF08337_consen 282 ATVALVPKQH 291 (539)
T ss_dssp EEEEEEES--
T ss_pred ceEEEeeccc
Confidence 9998887653
No 240
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=84.27 E-value=5.9 Score=22.75 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=43.4
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCC--CCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~--~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
...+.+....||.+|.+.+.....- ....-.+..||+...+ .-.+.-++++++|.+....
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppv 74 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPV 74 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEEST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCC
Confidence 4567888899999999999877531 2245666688888877 3556667889988776543
No 241
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=84.17 E-value=5.2 Score=23.82 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred eeeeecCCc----eEEEeeCCCchHHHHHHHHhhhcCC--CCCceeE
Q 040824 79 IKVKTLTGK----EIEIDIEPTDTIERIKERVEEKEGI--PPVQQRL 119 (154)
Q Consensus 79 i~v~~~~~~----~~~~~v~~~~tv~~LK~~i~~~~~i--~~~~~~l 119 (154)
|.|...++. ...+.++.++|+.++-+.+.+++++ ++....|
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 334444444 6789999999999999999999998 5566677
No 242
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=83.23 E-value=6.4 Score=29.95 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. +++....|+.+|-+. .+++++..-+..+|..+..+ .-.++-+++||.|.++--..||
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCC
Confidence 5554 556677888888664 57888888888999988632 3456678999999998887776
No 243
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.02 E-value=3.2 Score=31.50 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=41.1
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc---ceE-----eccCceeccccccccccee
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLH 68 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~---g~~-----L~d~~~l~~~~i~~~~~i~ 68 (154)
.-|...-||.++|..+..+.|+.+.+++|++- |+. .+.+..|..|+|.+|+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~l 413 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFL 413 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEee
Confidence 44556669999999999999999999999863 332 3345567777788888763
No 244
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=82.70 E-value=6.3 Score=24.38 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=29.9
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
+.|-..++...++.++.++||+++-..+.+++.+++
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~ 40 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPS 40 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCC
Confidence 455555666678999999999999999999988766
No 245
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=82.45 E-value=1.7 Score=31.74 Aligned_cols=59 Identities=17% Similarity=0.435 Sum_probs=40.6
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC------eecCCCCcccccccCCCCEEEEEEe
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG------KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g------~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.+-++.+++++++-..+.+..|.|++.--.+|.. ..++.+.|+....+.+||.|-+-..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~ 152 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRA 152 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE-
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEec
Confidence 4678999999999999999999998766565543 3578899999999999999966543
No 246
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=82.37 E-value=3.5 Score=35.19 Aligned_cols=64 Identities=17% Similarity=0.330 Sum_probs=50.2
Q ss_pred CCceEEEeeCC-CchHHHHHHHHhhhcCCCCCceeEEE-CCeecCCCCccccccc--CCCCEEEEEEe
Q 040824 85 TGKEIEIDIEP-TDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARDYNI--EGGSVLHLVLA 148 (154)
Q Consensus 85 ~~~~~~~~v~~-~~tv~~LK~~i~~~~~i~~~~~~l~~-~g~~l~d~~~L~~~~i--~~~~~i~~~~~ 148 (154)
.|+...|+... +.|+++||-+|++.+|....++.++- .|..+..++.+.+|.- ++.+.|+++.+
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffFnk 70 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFFNK 70 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEeeh
Confidence 46777777765 46999999999999999999998885 4567778888888863 55667777643
No 247
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=82.35 E-value=7.8 Score=22.71 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=37.2
Q ss_pred CEEEEEEeCC-CcHHHHHHHHHhHhC-CC--CCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 11 KTITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 11 ~~~~~~v~~~-~tv~~lk~~i~~~~~-~~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
....++++.+ .|+.+|.+.+..... .. .....+..+++...+ +.-+++++.|.+...
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Pp 76 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPP 76 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCC
Confidence 3356788766 899999999988753 11 122344566766653 445777888866654
No 248
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=82.33 E-value=6.6 Score=24.87 Aligned_cols=48 Identities=8% Similarity=0.234 Sum_probs=36.8
Q ss_pred EEEEeCCC----CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEe
Q 040824 3 IFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (154)
Q Consensus 3 v~v~~~~~----~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L 50 (154)
|.++..++ +.-...|++++|++.+...+++..+++.+++...|-+...
T Consensus 33 i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 33 IRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred EEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 44454443 2245789999999999999999999999999888755443
No 249
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.26 E-value=0.39 Score=37.75 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=50.1
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.+..+..-|-++|...++++.|++-...+.+.+|+.++..+||.+.|++.+....+.+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 44555566789999999999999998999999999999999999999988876655543
No 250
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=82.12 E-value=6.9 Score=21.96 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=36.6
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
.++++...|+.+|.+.+ +++++...+..+|+.+..+ .-.++-+++++.|.+....
T Consensus 8 ~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 8 PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 34555678999988775 4667777777888776433 2233457888888766543
No 251
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=81.89 E-value=8.6 Score=22.86 Aligned_cols=39 Identities=28% Similarity=0.253 Sum_probs=30.8
Q ss_pred EEEEeCCCC----EEEEEEeCCCcHHHHHHHHHhHhCCCCCCe
Q 040824 3 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (154)
Q Consensus 3 v~v~~~~~~----~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q 41 (154)
|+|-..++. ...+.++.++|+.++.+.+-++++++.+..
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~ 47 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPS 47 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGG
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCC
Confidence 445555555 788999999999999999999999844444
No 252
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=81.66 E-value=9.6 Score=23.29 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=31.8
Q ss_pred EEEEEeCCCCEEEEEEeC-----CCcHHHHHHHHHhHhCCCC-CCeEEEE
Q 040824 2 QIFVKTLTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~-----~~tv~~lk~~i~~~~~~~~-~~q~L~~ 45 (154)
.|++.. +|....+.++. +.+..+|+++|.+.+++++ ..-.|.|
T Consensus 2 ~vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y 50 (91)
T cd06398 2 VVKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTY 50 (91)
T ss_pred EEEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 355665 56667777774 6899999999999999987 4444445
No 253
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=81.25 E-value=7.6 Score=24.05 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=34.0
Q ss_pred eecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC-ceeEEECCeec
Q 040824 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIYAGKQL 126 (154)
Q Consensus 82 ~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~-~~~l~~~g~~l 126 (154)
+-..|.+.-+.|+.+.|..+|++++++.++++.. ..++...+..+
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edl 63 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDL 63 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCc
Confidence 3446788889999999999999999999998875 23333345444
No 254
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=81.01 E-value=2.7 Score=24.36 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=30.0
Q ss_pred chHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEE
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
.|+++|.+..++++|++ ...-+.-+|.+++|=. -|.+||.+++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~-----~IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDID-----VIRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEE-----EEEcCCEEEE
Confidence 69999999999999997 3333444555554422 3578888876
No 255
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=80.58 E-value=8 Score=21.66 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=36.8
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
+|+.+ ++..+.|+.+|.+.+ +++++...+..+|..+.. ..-.++-+++++.|.+...
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEe
Confidence 45544 445677899988764 566666666678877632 2233456788888876654
No 256
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=80.40 E-value=6.2 Score=23.43 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=27.3
Q ss_pred chHHHHHHHHhhhcCCCCCceeEEE--CCeecCCCC
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLIY--AGKQLADDK 130 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~~--~g~~l~d~~ 130 (154)
.+..+|+.+.+..++++.+..+|.. .|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCH
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHH
Confidence 5899999999999999988888875 677777654
No 257
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=78.88 E-value=2.5 Score=27.36 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=34.5
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~ 58 (154)
+...+-++.+.||+++...|+++.+++++..-|+.++.......++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 334446889999999999999999999988433345555555555544
No 258
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=78.72 E-value=6.2 Score=24.79 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=35.0
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCc-eeEEECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~-~~l~~~g~~l~d~~~L~~~ 135 (154)
.+-++.+.||+++...|..+..++++. .-|+.++.....+.++++.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 456899999999999999999997765 4555677667777888765
No 259
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=78.62 E-value=2.6 Score=29.96 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=21.5
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
|-.|.+.+.+++++.++|++|++++|++.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 55688999999999999999999999884
No 260
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=78.61 E-value=1.7 Score=25.65 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHhhhcCCCCCceeEEE---CCeecCCCCcccccccC
Q 040824 105 RVEEKEGIPPVQQRLIY---AGKQLADDKTARDYNIE 138 (154)
Q Consensus 105 ~i~~~~~i~~~~~~l~~---~g~~l~d~~~L~~~~i~ 138 (154)
.|++++.++|++..|+- .+.+|+-..+|.++||.
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGir 38 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIR 38 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-S
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHH
Confidence 48899999999998883 46789999999999995
No 261
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=77.97 E-value=5.1 Score=32.67 Aligned_cols=64 Identities=27% Similarity=0.468 Sum_probs=41.1
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhc--CCC------CCceeEEEC----Ce-ecCCC-------------CcccccccCC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GK-QLADD-------------KTARDYNIEG 139 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~--~i~------~~~~~l~~~----g~-~l~d~-------------~~L~~~~i~~ 139 (154)
...+++.|-.++||.++|++|-... +.| ++..-|.|. |. .|.|. .||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3558899999999999999994332 333 344444432 22 33322 3799999999
Q ss_pred CCEEEEEEee
Q 040824 140 GSVLHLVLAL 149 (154)
Q Consensus 140 ~~~i~~~~~~ 149 (154)
|+++-+..+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999888765
No 262
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=77.83 E-value=12 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCC--CCceeEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP--PVQQRLI 120 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~--~~~~~l~ 120 (154)
++....+.+..++|+.++-..+.++++++ +....|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 35667899999999999999999999986 4566665
No 263
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=77.49 E-value=6.1 Score=24.10 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=34.7
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCee
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQ 125 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~ 125 (154)
...+.|.|+++.|=.++|+.++..+|+++...+.+ +.|+.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 36799999999999999999999999999888665 66653
No 264
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=77.25 E-value=5.2 Score=24.17 Aligned_cols=51 Identities=22% Similarity=0.323 Sum_probs=29.3
Q ss_pred CchHHHHHHHH-hhhcCCCCCc----eeEEECCee----cCCCCcccccccCCCCEEEEE
Q 040824 96 TDTIERIKERV-EEKEGIPPVQ----QRLIYAGKQ----LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 96 ~~tv~~LK~~i-~~~~~i~~~~----~~l~~~g~~----l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.+|+.+|-..+ ..+.|+.... -+++|.... -...++|+++||.+|+.+.+.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 57899999987 4466654322 244554432 235679999999999998764
No 265
>PRK01777 hypothetical protein; Validated
Probab=76.94 E-value=15 Score=22.69 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=37.4
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCC-------ceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPV-------QQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~-------~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
...+++++..||.++-... |++.+ .-.+.-+|+.... +.-+++||.|.++-.+
T Consensus 18 ~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 18 LQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIYRPL 77 (95)
T ss_pred EEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEecCC
Confidence 3678899999999987755 54433 2356667776654 3467899999987554
No 266
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=76.91 E-value=13 Score=21.96 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=37.1
Q ss_pred EEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 4 ~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
.|-.++|+...+.+.+++|+.++-+....+.++.|+..-|..
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 466789999999999999999999999999999998877654
No 267
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=76.83 E-value=13 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~ 121 (154)
+|-+..+.++..-|-+.|+++++..+.+|+...-+.|
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 5566778888888999999999999999988777776
No 268
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=75.63 E-value=1.2 Score=34.11 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=42.0
Q ss_pred CCCCEEEEEEe-CCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCcee
Q 040824 8 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (154)
Q Consensus 8 ~~~~~~~~~v~-~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l 56 (154)
.+|+...+.+. .+..+..+|.++.....++++.|.+.+.|..|.|+.++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 35677777776 77889999999999999999999999999999887443
No 269
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=75.20 E-value=15 Score=21.78 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=27.8
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~ 42 (154)
+....+.++.++|..++.+.+.+++++..+...
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~ 44 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPED 44 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCccc
Confidence 566789999999999999999999998843433
No 270
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=74.52 E-value=5.1 Score=24.82 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=24.4
Q ss_pred eEEECCeecCCCCccccc-ccCCCCEEEEEEeecCC
Q 040824 118 RLIYAGKQLADDKTARDY-NIEGGSVLHLVLALRGG 152 (154)
Q Consensus 118 ~l~~~g~~l~d~~~L~~~-~i~~~~~i~~~~~~~gg 152 (154)
.|-|.|+.|..+.+|.+| |-.+...|.+-+..+|+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 466899999999999999 33444455555555554
No 271
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=74.29 E-value=7.8 Score=24.67 Aligned_cols=46 Identities=9% Similarity=0.064 Sum_probs=34.9
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCce-eEEECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~-~l~~~g~~l~d~~~L~~~ 135 (154)
.+-|+.+.||+++...|..+..++++.- -|..++.....+.++++.
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHH
Confidence 4569999999999999999999887774 444566544566677665
No 272
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=74.27 E-value=16 Score=21.91 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
||+.. +++.+.||.+|-+. .++++...-+-.+|..+ +......+-+++|+.|.++--
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iV-pr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVV-PRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEe-CHHHcCcccCCCCCEEEEEEE
Confidence 45543 44566788887765 46777777777888877 334455666888888876643
No 273
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=74.02 E-value=9.7 Score=22.84 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=33.7
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCC-CCCceeEE--ECCe--ecCCCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGI-PPVQQRLI--YAGK--QLADDK 130 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i-~~~~~~l~--~~g~--~l~d~~ 130 (154)
.-.+.|.|..|+.+|-+..+.++.+ .|+...|+ .+|. .|.|+.
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCccc
Confidence 3568999999999999999999998 68888776 3454 455543
No 274
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=73.68 E-value=14 Score=22.37 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=37.5
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
++.|--++|....+++..+++-.++=+.+..+.++|.+...-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~Y 44 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNY 44 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhh
Confidence 577888899999999999999999999999999999877654
No 275
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=73.19 E-value=15 Score=21.53 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=32.0
Q ss_pred chHHHHHHHHhhhcCCCCCceeEE--ECCeecCCCCcccccccCCCCEE
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTARDYNIEGGSVL 143 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i 143 (154)
.+..+|+.+.+..++++....++. -.|..++++.-... +.++..+
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt~l 65 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNTEL 65 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCcEE
Confidence 478999999999999987666665 37888877653332 3344444
No 276
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=71.35 E-value=15 Score=22.52 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=33.7
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~ 124 (154)
.+.+.|.|++..|=.++|+.++..+++++...+-+ ..|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 46899999999999999999999999999888655 5554
No 277
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=71.19 E-value=13 Score=25.06 Aligned_cols=47 Identities=28% Similarity=0.380 Sum_probs=34.0
Q ss_pred EEEEEEeC-CCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccc
Q 040824 12 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62 (154)
Q Consensus 12 ~~~~~v~~-~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~ 62 (154)
.+.+++.. .+.+.++++..++.+.++.+ +..|+.+....|++||--.
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~Ky 123 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYAKY 123 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhhhc
Confidence 36677777 67788888777776644432 2458999999999998743
No 278
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=71.17 E-value=19 Score=21.42 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCC
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~ 39 (154)
+....+.+..++|..++-..+.++++++.+
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 566789999999999999999999998764
No 279
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=67.75 E-value=23 Score=22.50 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=31.2
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecc
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~ 58 (154)
+-++.+.||+++...|++...+.++.-..+| ++.....+.++++
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHH
Confidence 4588999999999999999998886644444 4433344555544
No 280
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=67.51 E-value=21 Score=23.94 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=33.5
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccc
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~ 62 (154)
+.+++...+.+.++++...+.+-++.+ +..|+-+....|++||--.
T Consensus 76 I~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~Ky 121 (150)
T TIGR03260 76 IILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYIKY 121 (150)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhhhh
Confidence 566666777888888887777665442 2457788999999998754
No 281
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=67.40 E-value=5.8 Score=24.56 Aligned_cols=30 Identities=37% Similarity=0.785 Sum_probs=22.4
Q ss_pred EEEEcceEeccCceecccccccccceeeeee
Q 040824 42 RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 42 ~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
.|+|.|+.|..+.+|++| +..+..-.++++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivK 32 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVK 32 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEE
Confidence 478999999999999999 555554444443
No 282
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=67.08 E-value=15 Score=23.02 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=34.6
Q ss_pred EEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEeccCceecccc---cccccceeeee
Q 040824 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYN---IQKESTLHLVL 71 (154)
Q Consensus 16 ~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d~~~l~~~~---i~~~~~i~l~~ 71 (154)
=++.+.||+++...|+....++++ +.|+ .++.....+.++++.- -.++..+++..
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~-~alfl~Vn~~lp~~s~tm~elY~~~kdeDGFLY~~Y 97 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPE-QALFLFVNNTLPSTSSTMGELYEKYKDEDGFLYMTY 97 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TT-S-EEEEBTTBESSTTSBHHHHHHHHB-TTSSEEEEE
T ss_pred EEcCCCchhhHHHHhhhhhcCCCC-ceEEEEEcCcccchhhHHHHHHHHhCCCCCeEEEEe
Confidence 378899999999999999998876 4443 4565556666666533 12344555543
No 283
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=66.95 E-value=12 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.9
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhC
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEG 35 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~ 35 (154)
++++++.++|+.++|+.+.+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 57889999999999999987754
No 284
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=66.87 E-value=21 Score=21.17 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=27.6
Q ss_pred chHHHHHHHHhhhcCCCCCceeEE--ECCeecCCCCc
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKT 131 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d~~~ 131 (154)
.+..+|+.+.+++++++....++. -.|.+++++.-
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeY 57 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEY 57 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHH
Confidence 478999999999999976666665 47888876643
No 285
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=66.67 E-value=3 Score=31.97 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=43.5
Q ss_pred ecCCceEEEeeC-CCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcc
Q 040824 83 TLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTA 132 (154)
Q Consensus 83 ~~~~~~~~~~v~-~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L 132 (154)
..+|+...+.+. .+..+..+|.++....++++.-|++.+.|..+.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 347788888887 78889999999999999999999999999999887544
No 286
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=66.38 E-value=30 Score=21.74 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=47.0
Q ss_pred eeeeeecC-CceEEEeeCCCchHHHHHHHHhhhc----C--CCCC-ceeEEECCe--ecCCCCccccc-----ccCCCCE
Q 040824 78 MIKVKTLT-GKEIEIDIEPTDTIERIKERVEEKE----G--IPPV-QQRLIYAGK--QLADDKTARDY-----NIEGGSV 142 (154)
Q Consensus 78 ~i~v~~~~-~~~~~~~v~~~~tv~~LK~~i~~~~----~--i~~~-~~~l~~~g~--~l~d~~~L~~~-----~i~~~~~ 142 (154)
.+.+...+ ...+.+.+++++|+.+|.+.+-.+. + -+++ +..|--.|+ .|..+.+|.+| .+..|..
T Consensus 19 ~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~ 98 (108)
T smart00144 19 LIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGRE 98 (108)
T ss_pred EEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCC
Confidence 34444433 3568899999999999998886651 1 2233 566666664 45566777777 4677777
Q ss_pred EEEEEee
Q 040824 143 LHLVLAL 149 (154)
Q Consensus 143 i~~~~~~ 149 (154)
+++.+..
T Consensus 99 ~~L~L~~ 105 (108)
T smart00144 99 PHLVLMT 105 (108)
T ss_pred ceEEEEe
Confidence 7776544
No 287
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=65.18 E-value=32 Score=21.62 Aligned_cols=62 Identities=29% Similarity=0.337 Sum_probs=40.6
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHh----C--CCCC-CeEEEEcce--EeccCceecccc-----cccccceeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKESTLHLVLR 72 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~----~--~~~~-~q~L~~~g~--~L~d~~~l~~~~-----i~~~~~i~l~~~ 72 (154)
..+.+.++.++++.++.+.+-.+. + -+++ +=.|.-.|+ .|..+..|.+|. ++.+..+++.+.
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~ 104 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLM 104 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEE
Confidence 558899999999999999887662 1 1122 233444563 366777788777 455666666554
No 288
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=65.03 E-value=23 Score=21.04 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=32.4
Q ss_pred chHHHHHHHHhhhcCCCCCceeEE--ECCeecCCCCcccccccCCCCEEEE
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
.+..+|+.+.+....++....+|. -.|..++++.-... +.++..+.+
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~ 69 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMV 69 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEE
Confidence 478999999999999986666664 56888876543332 345555543
No 289
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=64.98 E-value=27 Score=20.84 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=34.4
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
+.+++. +|.+..+..+..-+...|++++...+++|+...-+.|
T Consensus 2 ~fKv~~-~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 2 QFKSSF-LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eEEEEe-CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 456665 6677778887788999999999999999987766655
No 290
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=64.53 E-value=31 Score=21.36 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=44.0
Q ss_pred eeeeeeec-CCceEEEeeCCCchHHHHHHHHhhh--cCCC---CC-ceeEEECCe--ecCCCCccccc-----ccCCCCE
Q 040824 77 TMIKVKTL-TGKEIEIDIEPTDTIERIKERVEEK--EGIP---PV-QQRLIYAGK--QLADDKTARDY-----NIEGGSV 142 (154)
Q Consensus 77 ~~i~v~~~-~~~~~~~~v~~~~tv~~LK~~i~~~--~~i~---~~-~~~l~~~g~--~l~d~~~L~~~-----~i~~~~~ 142 (154)
+.+.|... .+..+.+.++.+.|+.+|.+.+-.+ .+.. .. +..|--.|. -|..+.+|.+| .+..+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 44555555 4567899999999999999988666 2222 22 556666664 46677888888 4556666
Q ss_pred EEEEE
Q 040824 143 LHLVL 147 (154)
Q Consensus 143 i~~~~ 147 (154)
+++.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 66554
No 291
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=64.46 E-value=16 Score=20.17 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=34.8
Q ss_pred eeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 80 ~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.|..++|+... ++...|+.++-+.|....+-.. .--..+|+..+-+ +-+++|+++.++
T Consensus 2 ~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~--~~A~Vng~~vdl~-----~~L~~~d~v~ii 59 (60)
T PF02824_consen 2 RVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRA--VAAKVNGQLVDLD-----HPLEDGDVVEII 59 (60)
T ss_dssp EEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCE--EEEEETTEEEETT-----SBB-SSEEEEEE
T ss_pred EEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhe--eEEEEcCEECCCC-----CCcCCCCEEEEE
Confidence 44456777655 7778899999998876654211 1112466554433 356777777664
No 292
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=64.39 E-value=29 Score=20.94 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=42.3
Q ss_pred EEEeeCCCchHHHHHHHHhhhc-C--CCC--C-ceeEEECC--eecCCCCcccccccCCCCEEEEEEe
Q 040824 89 IEIDIEPTDTIERIKERVEEKE-G--IPP--V-QQRLIYAG--KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~-~--i~~--~-~~~l~~~g--~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.-+.|+..+|..++-++++... | +++ . ..++..+| ..+..+.++++.||.+-+.|.+...
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 4578899999999999997665 3 333 2 34666888 7899999999999999999988753
No 293
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=63.52 E-value=28 Score=20.40 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=38.3
Q ss_pred EEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc
Q 040824 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 4 ~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g 47 (154)
.|--+||+.-.+.+.++.||.+.-.++-++.|+.++.-.++.-|
T Consensus 3 rV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 3 RVILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 45567888888999999999999999999999999888888655
No 294
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=61.58 E-value=24 Score=20.88 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=31.3
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+.+.|.|++..|=.++|+.++..+++.+...+.+
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 36899999999999999999999999998887655
No 295
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=60.51 E-value=56 Score=25.03 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=41.1
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
||+. .++..+.|+.+|-+. .+++++..-+..||+.+. .....++-+++++.|.++.-..
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEec
Confidence 4554 455667788887765 578888888888998874 3334456678888888776543
No 296
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=59.78 E-value=38 Score=22.55 Aligned_cols=90 Identities=17% Similarity=0.277 Sum_probs=56.3
Q ss_pred EEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCce------------ecccccccccceeeeeeeecceeeeeee
Q 040824 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGTMIKVKT 83 (154)
Q Consensus 16 ~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~------------l~~~~i~~~~~i~l~~~~~~~~~i~v~~ 83 (154)
+.-|+.-|..|..+.+-.-.+..+.-.+.++|+.|+++.. |..|.+.+++.=...-...++..+.+..
T Consensus 20 t~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~t 99 (149)
T PF10787_consen 20 TSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDT 99 (149)
T ss_pred ecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEe
Confidence 3335556788888877777778888888899999988664 5566676666522222222334555666
Q ss_pred cCCc-eEEEee-CCCchHHHHHHH
Q 040824 84 LTGK-EIEIDI-EPTDTIERIKER 105 (154)
Q Consensus 84 ~~~~-~~~~~v-~~~~tv~~LK~~ 105 (154)
..|+ .+.+.+ +-.+-|.-+|+.
T Consensus 100 KkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 100 KKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred ccCcceeEEEEEecccHHHHHHHh
Confidence 5554 355554 335567777765
No 297
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=59.73 E-value=33 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=22.8
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhC-CCCCCeEE
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEG-IPPDQQRL 43 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~-~~~~~q~L 43 (154)
.|-+=..++.|+++|++.|.+++. ..|....+
T Consensus 4 KFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~ 36 (73)
T PF10407_consen 4 KFLHLTDPNNTLSQLKEEIEERFKKLYPNEPEL 36 (73)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCc
Confidence 344456789999999999998875 44444333
No 298
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=59.28 E-value=29 Score=21.84 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=27.0
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~ 114 (154)
+++-..+|++..++|....+-.+++.++-+++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 344466899999999999999999999999999876
No 299
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=59.20 E-value=34 Score=20.03 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=46.4
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecccccccccceeeeeee
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
.+++++++....+-.-..+++++++..--++- +|.=+++.++-...=++.|+.+.+..+.
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRD 79 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRD 79 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccc
Confidence 46888888888888888899999987777775 4666788888777777888877666543
No 300
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=59.09 E-value=16 Score=31.52 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=42.5
Q ss_pred CCCEEEEEEeC-CCcHHHHHHHHHhHhCCCCCCeEEEEcc-eEeccCceecccc
Q 040824 9 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADYN 60 (154)
Q Consensus 9 ~~~~~~~~v~~-~~tv~~lk~~i~~~~~~~~~~q~L~~~g-~~L~d~~~l~~~~ 60 (154)
.|..+.++... .+|+.+||.+|..+.|....+|.++-+| .....+.+|..|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 46777777764 6689999999999999999999998765 5567777888887
No 301
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=59.04 E-value=44 Score=21.22 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.6
Q ss_pred CEEEEEeCCCCE--EEEEEeCCCcHHHHHHHHHhHhCCC
Q 040824 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 1 m~v~v~~~~~~~--~~~~v~~~~tv~~lk~~i~~~~~~~ 37 (154)
|+.+....+++. -.+.|+.++|..++.+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 566777666554 4689999999999999999998855
No 302
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.20 E-value=28 Score=20.94 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=31.6
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+.+.|.|++..+=.++|+.++..+++.+...+.+
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 36899999999999999999999999998888665
No 303
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.74 E-value=11 Score=29.99 Aligned_cols=58 Identities=24% Similarity=0.274 Sum_probs=49.6
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
.++.+.+-+-+++...|.++++++.+..+.+-+|++|+-.++|.+-|++.+....+..
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 4566677788999999999999999999999999999999999999988776554443
No 304
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=57.26 E-value=17 Score=21.56 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhC
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEG 35 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~ 35 (154)
..++++.++|+.++|+.+.+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46788999999999999987754
No 305
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=56.83 E-value=29 Score=27.57 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=61.9
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC---CCCcccccccCCCCEEEEEEee
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
+..+|.++-++|..+.=.++.++-+..++..+...-++....+.|- |.-++.. -.++|.++.+.+...+.|+-+-
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4567888889999998899999999999999999888888888775 6555554 3568999999999988777554
Q ss_pred c
Q 040824 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
+
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 4
No 306
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=56.79 E-value=12 Score=22.34 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCchHHHHHHHHhhhcC---CCCCceeEE--ECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 94 EPTDTIERIKERVEEKEG---IPPVQQRLI--YAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 94 ~~~~tv~~LK~~i~~~~~---i~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
....|+++|.+.+.++.. .......++ .+...+.+ .++-+++||+|.++-+.-||
T Consensus 25 ~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 25 TVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVG----LDTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred cHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeecc----ccccCCCCCEEEEeCCCCCC
Confidence 336799999999977665 222211211 22222222 23468999999888777666
No 307
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.34 E-value=40 Score=19.86 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=48.2
Q ss_pred EeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
++++.+...-.+-+-.++.+.+|+...-++ -.|--++..++-...-++.|+.+.++-|-+-|
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 556777777777777788889988877666 55666788888888889999999988776655
No 308
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=56.31 E-value=33 Score=20.85 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=33.1
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-EcceEe
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL 50 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g~~L 50 (154)
..+.+.+++++|=.++|+.++..+++.+...+-. ..|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 5688999999999999999999999998776554 566543
No 309
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=55.80 E-value=24 Score=27.97 Aligned_cols=73 Identities=15% Similarity=0.301 Sum_probs=55.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEecc---Cceecccccccccceeeeeeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
+|.|+.++|..|.-+++.++-+..+++.+.+.-.+....-.|- |..++.-+ .++|.++.+.+.+.+.++.+.+
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~r 393 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKKR 393 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecCC
Confidence 5778889999999999999999999999997766665555553 66666533 4589999999988886655443
No 310
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=55.27 E-value=35 Score=20.83 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-EcceE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQ 49 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g~~ 49 (154)
...+.+.++..++=.++|+.++..+++.+...+-. ..|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 45788999999999999999999999998776554 45543
No 311
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=55.15 E-value=44 Score=28.57 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=64.5
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE----cceE--eccCceecccccccccceeeee--ee-ecc--eeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQ--LEDGRTLADYNIQKESTLHLVL--RL-RGG--TMIKV 81 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~----~g~~--L~d~~~l~~~~i~~~~~i~l~~--~~-~~~--~~i~v 81 (154)
+.+.++...++..+|+++++..+++.+.-+++. +|.. ..++.+|+.+- ++.+|.+.+ .. .++ |.|..
T Consensus 879 ~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~--~~~~iTI~LG~~Lk~dE~~~KI~~ 956 (1203)
T KOG4598|consen 879 HKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAF--QSCFITIKLGAPLKSDEKMMKIIL 956 (1203)
T ss_pred eeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhc--ccceEEEEecCcCCCCceeeEEEe
Confidence 567888899999999999999999999988873 2222 23455777644 455554333 21 122 33321
Q ss_pred -eec---CC---ceEEEeeCCCchHHHHHHHHhhhcC--------CCCCceeEEEC
Q 040824 82 -KTL---TG---KEIEIDIEPTDTIERIKERVEEKEG--------IPPVQQRLIYA 122 (154)
Q Consensus 82 -~~~---~~---~~~~~~v~~~~tv~~LK~~i~~~~~--------i~~~~~~l~~~ 122 (154)
+.. .. ..+..-+..++|+++.|..+-.... ++..++|+..+
T Consensus 957 L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K 1012 (1203)
T KOG4598|consen 957 LDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGK 1012 (1203)
T ss_pred ehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHcc
Confidence 111 11 1133447889999988876644332 44555555443
No 312
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=55.06 E-value=35 Score=20.15 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=29.0
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
..+.+.++++++=.++|+.++..+++.+...+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 568899999999999999999999998866554
No 313
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=54.90 E-value=46 Score=20.19 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=24.1
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g 47 (154)
-...++.++|++.+-+.++++.++.+++....|-+
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin 52 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLKLKPSDSLFLYIN 52 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT----SS-EEEEE
T ss_pred cEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEc
Confidence 45789999999999999999999876655555543
No 314
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=54.44 E-value=15 Score=22.75 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=33.3
Q ss_pred ceEEEeeC---CCchHHHHHHHHhhhcCCCCCceeEEECCee--------cC--CCCc--ccccccCCCCEEEEEEeecC
Q 040824 87 KEIEIDIE---PTDTIERIKERVEEKEGIPPVQQRLIYAGKQ--------LA--DDKT--ARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 87 ~~~~~~v~---~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~--------l~--d~~~--L~~~~i~~~~~i~~~~~~~g 151 (154)
+...++++ ...|+++|-..++...--+ +-.++..+.. ++ |..- =.+|-+++||+|.++..+-|
T Consensus 18 k~h~v~l~~~~~~~ti~~Li~~l~~nll~~--r~elF~~~~~vrPGILvLINd~DwEl~g~~~y~l~~~D~I~FiSTLHG 95 (96)
T PF09138_consen 18 KKHKVSLPSDGEPATIKDLIDYLRDNLLKE--RPELFLEGGSVRPGILVLINDADWELLGEEDYVLKDGDNITFISTLHG 95 (96)
T ss_dssp SEEEEEE-SSCSC-BHHHHHHHHCCCT-SS--GHHHHBSSSSB-TTEEEEETTCEHHHHTCCCSB--TTEEEEEEETTT-
T ss_pred eeEEEEcCCCCCCcCHHHHHHHHHHhccCC--CHhHEecCCeEcCcEEEEEcCccceeecCcceEcCCCCEEEEEccCCC
Confidence 45566665 6789999999888755433 2222222211 11 1112 24689999999988877666
Q ss_pred C
Q 040824 152 G 152 (154)
Q Consensus 152 g 152 (154)
|
T Consensus 96 G 96 (96)
T PF09138_consen 96 G 96 (96)
T ss_dssp -
T ss_pred C
Confidence 5
No 315
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=54.34 E-value=38 Score=20.20 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=30.5
Q ss_pred chHHHHHHHHhhhcCCCCC--ceeEE--ECCeecCCCCcccccccCCCCEEE
Q 040824 97 DTIERIKERVEEKEGIPPV--QQRLI--YAGKQLADDKTARDYNIEGGSVLH 144 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~--~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~ 144 (154)
.+..+|+.+.+..+.++.+ ..+|. -.|..++++.-... +.++..+.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT~l~ 70 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNTKFV 70 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCcEEE
Confidence 4789999999999999843 25553 57888876653332 33444443
No 316
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=53.17 E-value=45 Score=19.53 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=31.2
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCee--cCCCCcccccccCCCCEEEEE
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ--LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~--l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.+.++..+||.++-.++....+-... .-..| |.. ....+--.++-+++||+|.++
T Consensus 18 ~liL~~GaTV~D~a~~iH~di~~~f~-~A~v~-g~s~~~~gq~Vgl~~~L~d~DvVeI~ 74 (75)
T cd01666 18 PVILRRGSTVEDVCNKIHKDLVKQFK-YALVW-GSSVKHSPQRVGLDHVLEDEDVVQIV 74 (75)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHhCC-eeEEe-ccCCcCCCeECCCCCEecCCCEEEEe
Confidence 47788899999999988854321111 01222 111 122233344567888888775
No 317
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=52.84 E-value=58 Score=20.70 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=35.5
Q ss_pred ecceeeeeeecCCce--EEEeeCCCchHHHHHHHHhhhcCCC-----CCceeEE
Q 040824 74 RGGTMIKVKTLTGKE--IEIDIEPTDTIERIKERVEEKEGIP-----PVQQRLI 120 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~--~~~~v~~~~tv~~LK~~i~~~~~i~-----~~~~~l~ 120 (154)
.+.|+.+.+..+++. -.+.|++++|+.++.+.+-+++.+. +..+-|.
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALY 74 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLY 74 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEE
Confidence 355788888866654 3488999999999999999999843 4566664
No 318
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=52.80 E-value=56 Score=25.88 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=52.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHh--CCCCCCeEEEEc----ceE--eccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~--~~~~~~q~L~~~----g~~--L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|-+.++..+|. ..+++.++++.+-|-.++-.-+ +..|+...+.-+ |.. +..+.++.+.|++.|..+++-..
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 56778877665 7899999999998888876544 455655555532 332 44577999999999999988774
No 319
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.18 E-value=29 Score=29.59 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=42.1
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE----CCeec--CCCCcccccccCCCCEEEE
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY----AGKQL--ADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~----~g~~l--~d~~~L~~~~i~~~~~i~~ 145 (154)
-+.+.|+...++..+|+.+++..+++.+++++.. +|..+ .++.||... .++.+|.+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI 939 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITI 939 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEE
Confidence 4678899999999999999999999999999973 23333 356677654 35566554
No 320
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=49.96 E-value=32 Score=19.37 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=12.8
Q ss_pred hhcCCCCCceeEEECCeecCC
Q 040824 108 EKEGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 108 ~~~~i~~~~~~l~~~g~~l~d 128 (154)
...|.|+....|+.+|..+..
T Consensus 6 ~v~g~P~p~v~W~k~~~~l~~ 26 (76)
T cd05736 6 HAEGIPLPRLTWLKNGMDITP 26 (76)
T ss_pred EeeecCCCEEEEEECCEECCC
Confidence 344666666677666666543
No 321
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=49.43 E-value=43 Score=20.67 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCee---------cCCCCcccccccCCCCEEEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQ---------LADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~---------l~d~~~L~~~~i~~~~~i~~ 145 (154)
..+.+.|.|++.+|=.++|+.+++.+++-+.....+ ..|+. +..+..-++.-+..|..|.+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 457899999999999999999999999988887654 44431 33444455555566666543
No 322
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=49.24 E-value=62 Score=20.01 Aligned_cols=70 Identities=23% Similarity=0.385 Sum_probs=40.5
Q ss_pred EEEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhH--hCCCCC----CeEEEEcc--eEeccCceecccc-----cccccce
Q 040824 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAG--KQLEDGRTLADYN-----IQKESTL 67 (154)
Q Consensus 2 ~v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~--~~~~~~----~q~L~~~g--~~L~d~~~l~~~~-----i~~~~~i 67 (154)
.|.|... .+..+.+.++.++|+.+|.+.+-.+ .+..+. +=.|.-.| .-|..+..|.+|. +..+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 4566666 4466899999999999999998766 222221 22333445 3366777888877 3444444
Q ss_pred eeee
Q 040824 68 HLVL 71 (154)
Q Consensus 68 ~l~~ 71 (154)
++.+
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 323
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=49.14 E-value=68 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=30.2
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
-.+.++++.|++.+...+.+..+++..++-++|=.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN 81 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN 81 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc
Confidence 45789999999999999999999998888777643
No 324
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=49.03 E-value=53 Score=20.25 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~ 44 (154)
...+.+.+++++|=.++|+.+++.+++-+...+-.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl 55 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTL 55 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 35688999999999999999999999888776553
No 325
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=48.87 E-value=51 Score=19.82 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=29.0
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
..+.+.++..++=.++|+.++..+++.+...+-
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 568899999999999999999999998866554
No 326
>CHL00030 rpl23 ribosomal protein L23
Probab=48.41 E-value=44 Score=20.52 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~ 124 (154)
.+.+.|.|+..+|=.++|+.++..+++.+.....+ ..|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 46899999999999999999999999988877554 3443
No 327
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=47.93 E-value=18 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=22.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHh
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~ 32 (154)
|.|++.+.+|+.|.++......-.-++..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67899999999999986654444555666654
No 328
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=47.86 E-value=51 Score=19.33 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=25.8
Q ss_pred HHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 103 KERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 103 K~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
++.+-+++++.+++.-.+ +.++--...+|.+.|+.|.+.-+...
T Consensus 20 ~~~lL~~y~i~~~qLP~I-----~~~DPv~r~~g~k~GdVvkI~R~S~t 63 (74)
T PF01191_consen 20 KKELLKKYNIKPEQLPKI-----LSSDPVARYLGAKPGDVVKIIRKSET 63 (74)
T ss_dssp HHHHHHHTT--TTCSSEE-----ETTSHHHHHTT--TTSEEEEEEEETT
T ss_pred HHHHHHHhCCChhhCCcc-----cccChhhhhcCCCCCCEEEEEecCCC
Confidence 334444568777665443 34444567789999999998876654
No 329
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=47.49 E-value=61 Score=19.41 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=30.0
Q ss_pred chHHHHHHHHhhhcCCCCCceeEE--ECCeecCCCCcccccccCCCCEEEE
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
.+..+|+.+.++...++. ..+|. -.|..++++.-... +.++..+.+
T Consensus 21 ~sL~EL~~K~~~~L~~~~-~~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~ 68 (81)
T cd06537 21 ASLQELLAKALETLLLSG-VLTLVLEEDGTAVDSEDFFEL--LEDDTCLMV 68 (81)
T ss_pred cCHHHHHHHHHHHhCCCC-ceEEEEecCCCEEccHHHHhh--CCCCCEEEE
Confidence 478999999999999863 35544 46778866543332 345555543
No 330
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=46.83 E-value=63 Score=19.43 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=33.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEE
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF 45 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~ 45 (154)
++++.. +|..+...++++.+..+|.+++........+ .-.+.|
T Consensus 2 ~~K~~y-~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw 45 (83)
T cd06404 2 RVKAAY-NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKW 45 (83)
T ss_pred eEEEEe-cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 456665 6788889999999999999999999887652 344433
No 331
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=43.93 E-value=55 Score=19.29 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEE
Q 040824 100 ERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 100 ~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
..++..++..+|.+.+..++-.+..--.-...+...-+.-|+.|++
T Consensus 4 ~~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f 49 (79)
T PF13699_consen 4 ESIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYF 49 (79)
T ss_pred HHHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEE
Confidence 4688999999999999999988754333334555556777888876
No 332
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=43.49 E-value=71 Score=19.03 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=25.1
Q ss_pred chHHHHHHHHhhhcCCCCCceeEE--ECCeecCCCCc
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKT 131 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~d~~~ 131 (154)
.+..+|+.+.+..++++. ..+|. -.|..++++.-
T Consensus 21 ~sL~eL~~K~~~~l~l~~-~~~lvL~eDGT~Vd~Eey 56 (79)
T cd06538 21 DSLEDLLNKVLDALLLDC-ISSLVLDEDGTGVDTEEF 56 (79)
T ss_pred CCHHHHHHHHHHHcCCCC-ccEEEEecCCcEEccHHH
Confidence 478999999999999953 34443 57888876543
No 333
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.44 E-value=39 Score=21.40 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=34.5
Q ss_pred EEEeC-CCcHHHHHHHHHhHhC----CCCCC------------------eEEEE----c-ceEecc-Cceeccccccccc
Q 040824 15 LEVES-SDTIDNVKAKIQDKEG----IPPDQ------------------QRLIF----A-GKQLED-GRTLADYNIQKES 65 (154)
Q Consensus 15 ~~v~~-~~tv~~lk~~i~~~~~----~~~~~------------------q~L~~----~-g~~L~d-~~~l~~~~i~~~~ 65 (154)
..++. +.||.+++.-+.+... ++|-+ +.|.. + .+.|+| .++|+.|||.+..
T Consensus 27 Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~GIenET 106 (127)
T KOG4147|consen 27 HDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAGIENET 106 (127)
T ss_pred eccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhccCcch
Confidence 35565 6789998877766643 33221 23331 1 256664 5589999998888
Q ss_pred ceeee
Q 040824 66 TLHLV 70 (154)
Q Consensus 66 ~i~l~ 70 (154)
.|.+.
T Consensus 107 Eis~F 111 (127)
T KOG4147|consen 107 EISFF 111 (127)
T ss_pred hhhhh
Confidence 77544
No 334
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=42.95 E-value=69 Score=18.77 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=19.1
Q ss_pred EEeeCC-CchHHHHHHHHhhhcCC-CCCceeE
Q 040824 90 EIDIEP-TDTIERIKERVEEKEGI-PPVQQRL 119 (154)
Q Consensus 90 ~~~v~~-~~tv~~LK~~i~~~~~i-~~~~~~l 119 (154)
.+.++. ..+|++||..|....++ ....+.|
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL 44 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKKLGKGTDFDL 44 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT---TTTEEE
T ss_pred EEEECCCeeEHHHHHHHHHHHhCCCcCCcCCE
Confidence 455544 56899999999777766 3334444
No 335
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=42.88 E-value=27 Score=22.44 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHH
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i 30 (154)
|+|++.. +++.+..++.++.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7888887 5788999999998888888765
No 336
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=42.83 E-value=24 Score=26.85 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=39.5
Q ss_pred EEEeeCCCchHHHHHHHHhhhcC-C-CCCceeEEECCeecCCCCccccc
Q 040824 89 IEIDIEPTDTIERIKERVEEKEG-I-PPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~-i-~~~~~~l~~~g~~l~d~~~L~~~ 135 (154)
-.+.+++..|+..||+-+..+.+ . +..+.-+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 35778999999999999999999 3 55666888999899999998854
No 337
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=42.59 E-value=61 Score=18.73 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred hhcCCCCCceeEEECCeecCCCCccccc--ccCCCCEEEEEEeecC
Q 040824 108 EKEGIPPVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLVLALRG 151 (154)
Q Consensus 108 ~~~~i~~~~~~l~~~g~~l~d~~~L~~~--~i~~~~~i~~~~~~~g 151 (154)
+..|+.+.+.-+-.+|..+.+...+.++ ....|+++.+.+...|
T Consensus 28 ~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 28 AKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp HHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred HHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 3458888888888999988766555544 5678888888877644
No 338
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=42.48 E-value=72 Score=18.83 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=30.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
+|+..+ +|+...+.++---...|+..++...+|.+-
T Consensus 2 RiKfE~-~gEKRIi~f~RPvkf~dl~~kv~~afGq~m 37 (79)
T cd06405 2 RIKFEH-NGEKRIIQFPRPVKFKDLQQKVTTAFGQPM 37 (79)
T ss_pred eEEEEe-cCceEEEecCCCccHHHHHHHHHHHhCCee
Confidence 566666 678899999999999999999999988654
No 339
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=40.79 E-value=12 Score=21.48 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=14.6
Q ss_pred hHHHHHHHHhhhcCCCCCce
Q 040824 98 TIERIKERVEEKEGIPPVQQ 117 (154)
Q Consensus 98 tv~~LK~~i~~~~~i~~~~~ 117 (154)
|+.++.+.+++.+|+++++.
T Consensus 1 t~~~Ii~~Va~~~~v~~~~i 20 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVEDI 20 (70)
T ss_dssp -HHHHHHHHHHHTT--HHHH
T ss_pred CHHHHHHHHHHHHCCCHHHH
Confidence 67899999999999987654
No 340
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=39.51 E-value=86 Score=18.89 Aligned_cols=32 Identities=3% Similarity=0.275 Sum_probs=25.1
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
..-++.+.|++++...|+++.++.++.-..+|
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slfly 50 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLY 50 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEE
Confidence 45689999999999999999988775533334
No 341
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=30 Score=26.64 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=48.2
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHh-CCCCCCeEEEEcc---eEec--cCceecccccccccc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 66 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~-~~~~~~q~L~~~g---~~L~--d~~~l~~~~i~~~~~ 66 (154)
.|.|++.+|+....++.+.++|..|=.-++... +.+-++-+|+++= +.|. .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 478999999888777788899998887776554 4666666777543 3343 466999999987764
No 342
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=38.84 E-value=57 Score=19.51 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhH
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~ 33 (154)
+.+.+.+|.+|.++++-++-+..-|..++..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 4567789999999999888777777777654
No 343
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=38.17 E-value=75 Score=21.65 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=33.0
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAG 123 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g 123 (154)
.+.|.|.|++..|=.++|+.++..+++.+...+.+ ..|
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 36799999999999999999999999998888665 444
No 344
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=37.31 E-value=34 Score=22.64 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.4
Q ss_pred eecCCCCcccccccCCCCEEEEEEeec
Q 040824 124 KQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 124 ~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+-.+|++||...+++-||-|.+.+...
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 456799999999999999999988764
No 345
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=37.30 E-value=87 Score=18.31 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=42.0
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecccccccccceee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
..+++++++....+-+-..+.+.+|+..--++. +|.-+++.++....-++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 457899999999888888999999988877775 466678888877766777776654
No 346
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=36.18 E-value=88 Score=18.99 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=30.2
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~ 44 (154)
|..-.+.|+..+|..++.+.+-+++.+.-+.+..-
T Consensus 12 gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FA 46 (87)
T cd01784 12 GSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFA 46 (87)
T ss_pred CceeEEEEecCCCHHHHHHHHHHhccccCCHHHeE
Confidence 56678999999999999999999999887777654
No 347
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=36.11 E-value=54 Score=18.27 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=14.1
Q ss_pred hcCCCCCceeEEECCeecCC
Q 040824 109 KEGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 109 ~~~i~~~~~~l~~~g~~l~d 128 (154)
..|.|+-...|+.+|..+.+
T Consensus 8 ~~G~P~p~v~W~k~g~~l~~ 27 (74)
T cd05748 8 ISGRPTPTVTWSKDGKPLKL 27 (74)
T ss_pred EeeeCCCeEEEEECCEEcCC
Confidence 44677777888888877743
No 348
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=35.75 E-value=1e+02 Score=18.59 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=31.5
Q ss_pred eEEEeeCCCchHHHHHHHH--hhhc-CCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 88 EIEIDIEPTDTIERIKERV--EEKE-GIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i--~~~~-~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
.+.+++++.+|+.+--+.- .+.+ ++..+..++-.-|+.... +.-+.+||.|++.-.+
T Consensus 15 ~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~-----d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 15 ILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKL-----DTVLRDGDRVEIYRPL 74 (84)
T ss_dssp EEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--T-----T-B--TT-EEEEE-S-
T ss_pred EEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCC-----CCcCCCCCEEEEeccC
Confidence 4678899999998876642 2222 467778888777776653 4467889999987554
No 349
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=35.69 E-value=57 Score=19.75 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=12.1
Q ss_pred CCCCCceeEEECCeecCCC
Q 040824 111 GIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 111 ~i~~~~~~l~~~g~~l~d~ 129 (154)
|-|+-...|..+|+.|.++
T Consensus 26 G~p~p~v~W~kdg~~l~~~ 44 (98)
T cd05762 26 GTQPITCTWMKFRKQIQEG 44 (98)
T ss_pred ccCCCceEEEECCEEecCC
Confidence 5556666777777766543
No 350
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=35.66 E-value=98 Score=19.70 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhhcC--CCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEeecCC
Q 040824 98 TIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLALRGG 152 (154)
Q Consensus 98 tv~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~~gg 152 (154)
.=+.|..-+..... .+.++++|-.+|..-.+-+.+.+..+ -|+|++.+.+.+.||
T Consensus 38 N~eAl~kTleTg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 38 NEEALAKTLETGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CHHHHHHHHhcCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 33556665554444 57888888888877667777888877 799999999999775
No 351
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=35.55 E-value=67 Score=19.14 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=28.1
Q ss_pred HHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 103 KERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 103 K~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
++.+-+++++.+++.-. .+.++--..+||.+.|+.|.+.-+..
T Consensus 23 ~~~lL~~y~i~~~qLP~-----I~~~DPv~r~~g~k~GdVvkI~R~S~ 65 (79)
T PRK09570 23 AKKLLKEYGIKPEQLPK-----IKASDPVVKAIGAKPGDVIKIVRKSP 65 (79)
T ss_pred HHHHHHHcCCCHHHCCc-----eeccChhhhhcCCCCCCEEEEEECCC
Confidence 34445566776666543 34444557778999999998876643
No 352
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=35.32 E-value=54 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.3
Q ss_pred hhcCCCCCceeEEECCeecCCC
Q 040824 108 EKEGIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 108 ~~~~i~~~~~~l~~~g~~l~d~ 129 (154)
+..|.|+....|..+|.++..+
T Consensus 6 ~v~G~P~P~v~W~k~g~~l~~~ 27 (70)
T cd05864 6 KYYGYPPPEVKWYKNGQLIVLN 27 (70)
T ss_pred EEEEeCCCEEEEEECCEECCCC
Confidence 3457888889999999988754
No 353
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=35.12 E-value=52 Score=27.50 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=28.5
Q ss_pred ecceeeeeeecCCceEE--EeeCC-------CchHHHHHHHHhhhcCCC
Q 040824 74 RGGTMIKVKTLTGKEIE--IDIEP-------TDTIERIKERVEEKEGIP 113 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~--~~v~~-------~~tv~~LK~~i~~~~~i~ 113 (154)
.+.+.|+++..+|+... +...+ -.|+.+||.+|++++|+.
T Consensus 246 ~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~ 294 (603)
T PRK05841 246 NRKLNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLD 294 (603)
T ss_pred CCeEEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccc
Confidence 34577888888787644 44441 147999999999999865
No 354
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=34.73 E-value=99 Score=18.16 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.8
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
|.+..++++.-.+++.++.|+.+--.+.-+..|+.|+.=..
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V 42 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCAV 42 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEE
Confidence 45667777878899999999999888888888888744333
No 355
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=34.36 E-value=1.2e+02 Score=18.86 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~ 44 (154)
.+..-.+.|+.++|..++.+.+-+++.+..+.+.+-
T Consensus 15 ~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFA 50 (96)
T cd01778 15 KDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFA 50 (96)
T ss_pred CCceeEEEEecCCcHHHHHHHHHHhheeccCCcceE
Confidence 456678999999999999999999999887777664
No 356
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=51 Score=25.46 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=48.7
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhc-CCCCCceeEEECC---eec--CCCCcccccccCCCCE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKE-GIPPVQQRLIYAG---KQL--ADDKTARDYNIEGGSV 142 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~-~i~~~~~~l~~~g---~~l--~d~~~L~~~~i~~~~~ 142 (154)
.|.|+.++|+.....+-.+++|.-|-.-+.... |.+-..++|...- +.| +.+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 378889999876666678888888877765554 4677778888554 444 3677999999998875
No 357
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=33.99 E-value=23 Score=19.49 Aligned_cols=20 Identities=45% Similarity=0.509 Sum_probs=16.8
Q ss_pred hHHHHHHHHhhhcCCCCCce
Q 040824 98 TIERIKERVEEKEGIPPVQQ 117 (154)
Q Consensus 98 tv~~LK~~i~~~~~i~~~~~ 117 (154)
|+.++.+.+++.+|++++..
T Consensus 1 ~~~~I~~~Va~~~~i~~~~i 20 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPEDL 20 (60)
T ss_pred CHHHHHHHHHHHhCCCHHHH
Confidence 56789999999999987664
No 358
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=33.81 E-value=2.5e+02 Score=22.87 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=30.7
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~ 115 (154)
.-.|-.++.+.+.+.++-+.++.++...++++.|...+
T Consensus 237 ~~~vy~~Dhsy~tl~~~vs~svqEI~~~va~k~~~see 274 (573)
T KOG2378|consen 237 FCIVYLPDHSYVTLRIRVSASVQEILEAVAEKLGYSEE 274 (573)
T ss_pred eEEEEecCceEEEEEeechhHHHHHHHHHHHHhccccc
Confidence 33344556677888899999999999999999998776
No 359
>PF11055 Gsf2: Glucose signalling factor 2; InterPro: IPR022757 This entry represents fungal Glucose singalling factor 2. Gsf2 is localised to the ER and functions to promote the secretion of certain hexose transporters [].
Probab=33.79 E-value=1.2e+02 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=24.5
Q ss_pred CEEEEEeCCC--CEEEEEEeCCCcHHH-HHHHHH
Q 040824 1 MQIFVKTLTG--KTITLEVESSDTIDN-VKAKIQ 31 (154)
Q Consensus 1 m~v~v~~~~~--~~~~~~v~~~~tv~~-lk~~i~ 31 (154)
|.|+|+.-++ +.+.+.|+.++|+.+ |.....
T Consensus 1 mEiYvRfNdD~EkDY~FQV~~~~tf~dkl~kIF~ 34 (377)
T PF11055_consen 1 MEIYVRFNDDMEKDYCFQVSTEDTFRDKLFKIFS 34 (377)
T ss_pred CeEEEEecCccccceeEEecccchHHHHHHHHhc
Confidence 7899998766 558899999999999 554433
No 360
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=32.81 E-value=1.7e+02 Score=22.23 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.5
Q ss_pred EEEeCCCCEE-EEEEeC-CCcHHHHHHHHHhHh--CCCCCCeEEEEcc
Q 040824 4 FVKTLTGKTI-TLEVES-SDTIDNVKAKIQDKE--GIPPDQQRLIFAG 47 (154)
Q Consensus 4 ~v~~~~~~~~-~~~v~~-~~tv~~lk~~i~~~~--~~~~~~q~L~~~g 47 (154)
+-++.+++.+ .+..+- +.+|.+||..|-... |--.+.+.|+|+|
T Consensus 6 ~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q~Klg~g~DFdLl~yn~ 53 (427)
T COG5222 6 NYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLGSGKDFDLLFYNG 53 (427)
T ss_pred EEEeeccCCcceeEeccCCccHHHHHHHHHHhhhccCCccceEEEecC
Confidence 3344444433 355543 789999999986544 4446678888887
No 361
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=31.59 E-value=2.1e+02 Score=21.05 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=33.8
Q ss_pred eCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEec--cCceecccccccccce
Q 040824 18 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTL 67 (154)
Q Consensus 18 ~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~--d~~~l~~~~i~~~~~i 67 (154)
--++|+..|...+.+--...|+.|.|+|+|-..- -+.++.+..+.++-++
T Consensus 138 lfdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL~vGDgLRl 189 (305)
T PF06622_consen 138 LFDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQLRVGDGLRL 189 (305)
T ss_pred EEeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEeecCCcEEE
Confidence 3578999999999887778899999999874432 2234444433333333
No 362
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=30.97 E-value=1.6e+02 Score=20.08 Aligned_cols=91 Identities=11% Similarity=0.219 Sum_probs=31.3
Q ss_pred ecccccccccceeeeeeeecceeeeeeecCCceE--EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCccc
Q 040824 56 LADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEI--EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAR 133 (154)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~--~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~ 133 (154)
.+.+.+.....|.-++....-..|.|.+.+|+.- -+-+......-++...++.....--..... -....-.+..+-.
T Consensus 66 FA~~P~~~~~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~-~~~~~~~~~~p~~ 144 (160)
T PF07933_consen 66 FAQCPYDDYAAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQDHRKYLKREKEA-EEQSQAAESQPKK 144 (160)
T ss_dssp -EEEEE-SS--EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHHHHHS-SS-------------------
T ss_pred EEECcccCCCceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHHHHHHHhhchhhh-hhhhcccCCCCcc
Confidence 3344444444555455555446688888877663 356677778889999988776531111110 1111123556788
Q ss_pred ccccCCCCEEEEEE
Q 040824 134 DYNIEGGSVLHLVL 147 (154)
Q Consensus 134 ~~~i~~~~~i~~~~ 147 (154)
+|.++.|.+|++-+
T Consensus 145 D~sLKeGetI~ini 158 (160)
T PF07933_consen 145 DYSLKEGETIKINI 158 (160)
T ss_dssp --------------
T ss_pred CCcCCCCCEEEEec
Confidence 99999999998754
No 363
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=30.48 E-value=96 Score=17.03 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=14.2
Q ss_pred hhcCCCCCceeEEECCeecCC
Q 040824 108 EKEGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 108 ~~~~i~~~~~~l~~~g~~l~d 128 (154)
...|.|.....|..+|..+..
T Consensus 6 ~~~g~P~p~i~W~k~g~~~~~ 26 (69)
T cd05746 6 SAQGDPEPTITWNKDGVQVTE 26 (69)
T ss_pred cceEeCCCEEEEEECCEECCC
Confidence 345667667788888876653
No 364
>PRK08453 fliD flagellar capping protein; Validated
Probab=30.42 E-value=1.9e+02 Score=24.74 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcC-------CC---CCceeEEECCeecC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEG-------IP---PVQQRLIYAGKQLA 127 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~-------i~---~~~~~l~~~g~~l~ 127 (154)
.|+.+.+++++..|+.+|..+|-...+ +. ...++|+..+...-
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etG 188 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTG 188 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcC
Confidence 589999999999999999999984321 11 12477777766554
No 365
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=30.40 E-value=42 Score=25.62 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=39.0
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhC--CCCCCeEEEEcceEeccCceecccc
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN 60 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~--~~~~~q~L~~~g~~L~d~~~l~~~~ 60 (154)
..+.++..+||.+||.-+..+.+ -+.....+++++..|.+..||.+.-
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhh
Confidence 45788889999999999999988 4455667778888899999988543
No 366
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=30.22 E-value=1.1e+02 Score=17.42 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=15.8
Q ss_pred hhhcCCCCCceeEEECCeecC
Q 040824 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~~i~~~~~~l~~~g~~l~ 127 (154)
++..|-|+-...|..+|..++
T Consensus 5 C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 5 CEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred eeCcccCCCeEEEEECCeECC
Confidence 445677888888888888774
No 367
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=30.20 E-value=31 Score=19.76 Aligned_cols=38 Identities=11% Similarity=0.417 Sum_probs=21.6
Q ss_pred EeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEE
Q 040824 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
++++..+++..+.+.+.+ +.-...|...|+++||+|.+
T Consensus 25 ~~~~~~e~~~rf~~~L~~-----------------~Gv~~~L~~~G~~~GD~V~I 62 (69)
T PF09269_consen 25 TNFDDEESLRRFQRKLKK-----------------MGVEKALRKAGAKEGDTVRI 62 (69)
T ss_dssp EEE-TGGGHHHHHHHHHH-----------------TTHHHHHHTTT--TT-EEEE
T ss_pred cCCCCHHHHHHHHHHHHH-----------------CCHHHHHHHcCCCCCCEEEE
Confidence 345555666666666653 22235688889999999865
No 368
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=30.07 E-value=65 Score=20.81 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=15.6
Q ss_pred CCCCcccccccCCCCEEEEEE
Q 040824 127 ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 127 ~d~~~L~~~~i~~~~~i~~~~ 147 (154)
++++||++.+...||-|.+.+
T Consensus 100 d~~kTL~~~~F~iGDyidvaI 120 (120)
T PF06487_consen 100 DDNKTLADLRFVIGDYIDVAI 120 (120)
T ss_dssp TTTSBCGGGT--TT-EEEEEE
T ss_pred CcccCHhhCCcccCCEEEEeC
Confidence 688999999999999998754
No 369
>PRK00529 elongation factor P; Validated
Probab=30.04 E-value=1.3e+02 Score=20.95 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=19.7
Q ss_pred cCceecccccccccceeeeeeeecceeeeeeecCCceEEEeeCC
Q 040824 52 DGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP 95 (154)
Q Consensus 52 d~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~ 95 (154)
|..+..++.+..+..=........+|.+.+..-+++.+.+.++.
T Consensus 84 D~etyeq~~l~~~~lg~~~~~L~eg~~v~v~~~~~~~i~v~lP~ 127 (186)
T PRK00529 84 DTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPISVELPN 127 (186)
T ss_pred cCCCceeeEcCHHHhHHHHhhccCCCEEEEEEECCEEEEEECCC
Confidence 44455555554332111111223445555555566655555544
No 370
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=29.72 E-value=1e+02 Score=19.69 Aligned_cols=45 Identities=7% Similarity=0.141 Sum_probs=33.8
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEE-CCeecCCCCcccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARD 134 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~-~g~~l~d~~~L~~ 134 (154)
.+-|++..||+++-..|.++..+++++--++| ++.....+.++++
T Consensus 48 KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms~ 93 (116)
T KOG1654|consen 48 KYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMSA 93 (116)
T ss_pred eeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHHH
Confidence 46788999999999999999999998876664 5554444444443
No 371
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=29.62 E-value=1.5e+02 Score=24.49 Aligned_cols=51 Identities=24% Similarity=0.178 Sum_probs=42.5
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~ 124 (154)
..++.|.|...+|-.+.+.--..+-+..|+.-+.+.+++.+.+-.|..+|+
T Consensus 57 ~r~~~LrV~tk~g~~~~~~GF~d~d~~~L~~ff~~~~~~~i~qkel~ikGw 107 (615)
T KOG0526|consen 57 VRGYGLRVFTKDGGVYRFDGFRDDDLEKLKSFFSSNFSITIEQKELSIKGW 107 (615)
T ss_pred ccccceEEEccCCceEEecCcCHHHHHHHHHHHHHhhccchhhheeeeccc
Confidence 345678888878888999988889999999999999999888877776664
No 372
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.26 E-value=1.4e+02 Score=21.17 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=32.7
Q ss_pred cccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcC-CCCCceeEEECC
Q 040824 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG-IPPVQQRLIYAG 123 (154)
Q Consensus 63 ~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~-i~~~~~~l~~~g 123 (154)
.|+++|++-.--++=.|.. ...+.+.+.+|.+.|.+++..... +-|.-.+++..|
T Consensus 132 sG~TVH~V~e~vD~GpII~------Q~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g 187 (200)
T COG0299 132 SGCTVHFVTEGVDTGPIIA------QAAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEG 187 (200)
T ss_pred cCcEEEEEccCCCCCCeEE------EEeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6777776654322111111 125788999999999999976554 444444444444
No 373
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=29.09 E-value=1.3e+02 Score=20.25 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=31.6
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
+.+.+.|.|+...+=.++|+.++..+++.+....-+
T Consensus 81 ~~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 116 (145)
T PTZ00191 81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTL 116 (145)
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeE
Confidence 346899999999999999999999999988887554
No 374
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=28.98 E-value=50 Score=16.31 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=10.3
Q ss_pred CCchHHHHHHHHhhh
Q 040824 95 PTDTIERIKERVEEK 109 (154)
Q Consensus 95 ~~~tv~~LK~~i~~~ 109 (154)
.+.||.+||..+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 467899999988754
No 375
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=28.79 E-value=45 Score=19.30 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=11.5
Q ss_pred ccccccCCCCEEEEE
Q 040824 132 ARDYNIEGGSVLHLV 146 (154)
Q Consensus 132 L~~~~i~~~~~i~~~ 146 (154)
-..+.+++|+++|++
T Consensus 7 ~ksi~LkDGstvyiF 21 (73)
T PF11525_consen 7 KKSIPLKDGSTVYIF 21 (73)
T ss_dssp EEEEEBTTSEEEEEE
T ss_pred heeEecCCCCEEEEE
Confidence 345678899999887
No 376
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=28.62 E-value=85 Score=17.50 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=15.8
Q ss_pred hhcCCCCCceeEEECCeecCCC
Q 040824 108 EKEGIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 108 ~~~~i~~~~~~l~~~g~~l~d~ 129 (154)
...|.|+-...|+.+|..+.++
T Consensus 6 ~v~g~P~p~v~W~k~g~~l~~~ 27 (71)
T cd04976 6 KVKAYPPPEIQWYKNGKLISEK 27 (71)
T ss_pred EEEEeCCCEEEEEECCEECCCC
Confidence 3456777778888888887654
No 377
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=28.47 E-value=84 Score=17.79 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=14.7
Q ss_pred hhhcCCCCCceeEEECCeecC
Q 040824 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~~i~~~~~~l~~~g~~l~ 127 (154)
++..|.|+....|..+|+.+.
T Consensus 8 C~a~G~P~P~i~W~k~g~~i~ 28 (76)
T cd05868 8 CRANGNPKPSISWLTNGVPIE 28 (76)
T ss_pred EEeeEeCCCeEEEEECCEEcc
Confidence 344567777788888887775
No 378
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=28.30 E-value=1.5e+02 Score=18.37 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=27.1
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCC---CCceeEE
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIP---PVQQRLI 120 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~---~~~~~l~ 120 (154)
..++.++.++|+.++-...-.++|+. +++++|.
T Consensus 18 y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 18 YVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred eEEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 35788999999999999999999964 5666664
No 379
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=28.14 E-value=58 Score=18.37 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=14.6
Q ss_pred CcccccccCCCCEEEEEEee
Q 040824 130 KTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~ 149 (154)
..|.+.|+..|+.|.+.-+.
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~ 45 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKN 45 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeC
Confidence 45788899999998888553
No 380
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=27.98 E-value=1.1e+02 Score=17.93 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=25.5
Q ss_pred ecccccccccceeeeeeeecceeeeee-ecCCceEEEee-----CCCchHHHHHHHHhhhcC
Q 040824 56 LADYNIQKESTLHLVLRLRGGTMIKVK-TLTGKEIEIDI-----EPTDTIERIKERVEEKEG 111 (154)
Q Consensus 56 l~~~~i~~~~~i~l~~~~~~~~~i~v~-~~~~~~~~~~v-----~~~~tv~~LK~~i~~~~~ 111 (154)
-.+|-+.+|+.+.+.+.....+.-.+. ..+|. +.+.. -...|+.++++.|..+..
T Consensus 8 ~~~y~l~pGD~l~i~v~~~~~l~~~~~V~~dG~-I~lP~iG~v~v~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 8 PPEYRLGPGDVLRISVFGWPELSGEYTVDPDGT-ISLPLIGPVKVAGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp T------TT-EEEEEETT-HHHCCSEE--TTSE-EEETTTEEEE-TT--HHHHHHHHHHHHT
T ss_pred CCCCEECCCCEEEEEEecCCCcccceEECCCCc-EeecccceEEECCCCHHHHHHHHHHHHH
Confidence 456778889988887765444321222 23453 23221 135789999999987765
No 381
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=27.97 E-value=46 Score=18.72 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=15.6
Q ss_pred hhcCCCCCceeEEECCeecC
Q 040824 108 EKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 108 ~~~~i~~~~~~l~~~g~~l~ 127 (154)
...|.|+-...|..+|+.+.
T Consensus 6 ~v~g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 6 KVAAYPPPEFQWYKDGKLIS 25 (67)
T ss_pred EEEEeCCCEEEEEECCEECc
Confidence 34577877889988998886
No 382
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=27.90 E-value=2e+02 Score=24.87 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=45.9
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
.|+|-+++|. .+.++...|+-|+-..+....|.....-+ .+|+.. .-++.+++||+|.++-.-.
T Consensus 405 ~V~VfTPkG~--~~~Lp~gaT~lDfAy~iHt~iG~~~~gAk--vng~~v-----~l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 405 RVYVFTPKGD--VVDLPAGSTPLDFAYHIHSDVGHRCIGAK--IGGRIV-----PFTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred eEEEECCCCC--eEEcCCCCcHHHHHHHHhHHHHhhceEEE--ECCEEC-----CCCcCCCCCCEEEEEeCCC
Confidence 4667777887 57888999999999988877775432222 466544 4566889999999886543
No 383
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=27.79 E-value=1.1e+02 Score=23.37 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=36.2
Q ss_pred EEEEeCCCcHHHHHHHHHhHh--------------C-CCCCCeEEEEcceEeccCceecccc
Q 040824 14 TLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN 60 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~--------------~-~~~~~q~L~~~g~~L~d~~~l~~~~ 60 (154)
.+..+.--.|..++..|.+++ . -|.+...|+.+|+.|.++.+|+...
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 345555557888899998888 2 4566788999999999999887754
No 384
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=27.74 E-value=40 Score=19.34 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=14.7
Q ss_pred CCcccccccCCCCEEEEE
Q 040824 129 DKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 129 ~~~L~~~~i~~~~~i~~~ 146 (154)
...|.+.|+++||+|.+.
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 457888999999998764
No 385
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=27.52 E-value=1.4e+02 Score=17.68 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=23.7
Q ss_pred chHHHHHHHHhhhcCCCCCceeEE--ECCeec
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLI--YAGKQL 126 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l 126 (154)
.+..+|+.+.++.+.++....++. -.|..+
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeV 52 (77)
T cd06535 21 KNLKELLRKGCRLLQLPCAGSRLCLYEDGTEV 52 (77)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe
Confidence 478999999999999986655553 567777
No 386
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=27.23 E-value=1.2e+02 Score=17.22 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=15.5
Q ss_pred hhhcCCCCCceeEEECCeecC
Q 040824 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~~i~~~~~~l~~~g~~l~ 127 (154)
|+..|.|.-...|..+|+.+.
T Consensus 5 C~~~G~P~P~v~W~k~g~~~~ 25 (77)
T cd05875 5 CEAKGNPVPTFQWTRNGKFFN 25 (77)
T ss_pred EeccccCCCEEEEEECCEEcc
Confidence 345677888888888888663
No 387
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=27.12 E-value=71 Score=19.70 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=25.9
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccc
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~ 64 (154)
+++.+....|+..+.+........+....++.. ...+++.|+.-|-+.+|
T Consensus 45 lP~~~~~~ls~~~i~~~f~~l~~~~~~~~ri~L--Aiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 45 LPVPLTEKLSLEQIDEVFDSLPNPSGDPKRILL--AIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEEETT-EEEHHHHHHHHHHHHHHCT---EEEE--EEE-TTS-EEEEEEE--
T ss_pred EeeccCCCcCHHHHHHHHHHhcccCCCCcEEEE--EEEcCCCCEEEEEEeCC
Confidence 355566677888888777665544432333332 45566777777776555
No 388
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=26.97 E-value=1.4e+02 Score=17.55 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=36.0
Q ss_pred HHHHHHHhhhcC--CCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEeecCC
Q 040824 100 ERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLALRGG 152 (154)
Q Consensus 100 ~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~~gg 152 (154)
+.|.+-++.... .+.++++|-.+|..=.+-+.+.+..+ -|+|.|.+.+...|.
T Consensus 8 eal~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 8 EALEKTLETGRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp HHHHHHHHHSB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred HHHHHHHHhCcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 345555554444 46777888889976667777777776 688999999998875
No 389
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=26.92 E-value=1.3e+02 Score=20.85 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=11.2
Q ss_pred cceeeeeeecCCceEEEeeCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEP 95 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~ 95 (154)
++|.+.+..-+++.+.+.++.
T Consensus 106 eg~~v~v~~~~~~~i~v~lP~ 126 (184)
T TIGR00038 106 ENMEVSVTFYNGEPIGVELPN 126 (184)
T ss_pred CCCEEEEEEECCEEEEEECCC
Confidence 445555555556555555543
No 390
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=26.78 E-value=53 Score=19.28 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=15.4
Q ss_pred CcccccccCCCCEEEEEEeecCC
Q 040824 130 KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+.|.+.|+.+|+.|.+.-+.+.|
T Consensus 25 ~RL~~mG~~~G~~i~vi~~aplg 47 (75)
T COG1918 25 RRLLSMGIVPGASITVVRKAPLG 47 (75)
T ss_pred HHHHHcCCCCCCEEEEEEecCCC
Confidence 35666777777777776666555
No 391
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=26.60 E-value=1.7e+02 Score=18.36 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=29.1
Q ss_pred eCCCcHHHHHHHHHhHhC---CCCCCeEEEEcceEeccCc-eecccccccc
Q 040824 18 ESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGR-TLADYNIQKE 64 (154)
Q Consensus 18 ~~~~tv~~lk~~i~~~~~---~~~~~q~L~~~g~~L~d~~-~l~~~~i~~~ 64 (154)
....|..++-..+.+..+ +++=.+..++.|+.+.... .|-...+..+
T Consensus 28 ~~~~t~~~~l~~l~~~l~lh~VevIg~E~I~A~~ll~~~~~~L~H~~~~~~ 78 (104)
T PF14807_consen 28 SSQRTLPEFLQRLQQKLRLHVVEVIGNEGIFACQLLNSSPVCLLHCRVNAG 78 (104)
T ss_pred cCcCCHHHHHHHHHHhcCceEEEEeCccceeeeeccCCCCeEEEEEEecCC
Confidence 456788888888888766 3333446667777776555 4444444333
No 392
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=26.59 E-value=1.7e+02 Score=18.37 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=27.6
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
++|-..+|.+..+.|..=.+-.++|+++-+++|.+.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 456667899999999998899999999999999887
No 393
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=26.59 E-value=1.4e+02 Score=21.16 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=17.5
Q ss_pred EEeeCCCchHHHHHHHHhhhc
Q 040824 90 EIDIEPTDTIERIKERVEEKE 110 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~ 110 (154)
.+.+.+++|++.|-+++....
T Consensus 161 ~v~V~~~Dt~esl~qrv~~aE 181 (206)
T KOG3076|consen 161 AVPVIPGDTLESLEQRVHDAE 181 (206)
T ss_pred eeeecCCCCHHHHHHHHHHHH
Confidence 477899999999999986554
No 394
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=26.46 E-value=2.4e+02 Score=20.34 Aligned_cols=52 Identities=10% Similarity=0.207 Sum_probs=31.9
Q ss_pred ccccccccceeeeeeeecceeeeeee-cCCceEEEe----eC-CCchHHHHHHHHhhhc
Q 040824 58 DYNIQKESTLHLVLRLRGGTMIKVKT-LTGKEIEID----IE-PTDTIERIKERVEEKE 110 (154)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~~~~i~v~~-~~~~~~~~~----v~-~~~tv~~LK~~i~~~~ 110 (154)
+|-+.+|+.+.+.+--.+.....+.- .+|.. .+. +. ...|+.++.+.|+...
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I-~~P~iG~v~v~G~T~~e~~~~I~~~l 58 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSI-TFPLIGEVKLGGETPAAAERKIASRL 58 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeE-EeeecceEEECCCCHHHHHHHHHHHH
Confidence 46778888888777654443333222 24533 222 33 4679999999998765
No 395
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=1.7e+02 Score=18.05 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCchHHHHHHHHhhhcCCCCCceeEEECCee-------cC--CCCc--ccccccCCCCEEEEEEeecCC
Q 040824 95 PTDTIERIKERVEEKEGIPPVQQRLIYAGKQ-------LA--DDKT--ARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 95 ~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~-------l~--d~~~--L~~~~i~~~~~i~~~~~~~gg 152 (154)
...||++|-..+..++--.++. -++.+|.. ++ |... =.+|.+++||.|.++..+-||
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~ledgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYPLEDGDHIVFISTLHGG 101 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccCcccCCEEEEEEeccCC
Confidence 4578999988887755433333 33344431 12 2222 357899999999887777665
No 396
>PRK08453 fliD flagellar capping protein; Validated
Probab=25.70 E-value=3.2e+02 Score=23.43 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhH
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~ 33 (154)
+|+.+.++++...|+.+|.++|-..
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd~ 160 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITDA 160 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcCC
Confidence 6889999999999999999999854
No 397
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=25.46 E-value=1.4e+02 Score=16.94 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=11.4
Q ss_pred CCCCCceeEEECCeecCCC
Q 040824 111 GIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 111 ~i~~~~~~l~~~g~~l~d~ 129 (154)
|.|+-...|+.+|..+..+
T Consensus 20 g~P~p~i~W~k~g~~l~~~ 38 (85)
T cd05857 20 GNPTPTMRWLKNGKEFKQE 38 (85)
T ss_pred CCCCCEEEEEECCEECCCC
Confidence 4455566676677666543
No 398
>PRK12426 elongation factor P; Provisional
Probab=25.43 E-value=77 Score=22.17 Aligned_cols=86 Identities=13% Similarity=0.231 Sum_probs=42.5
Q ss_pred EEEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEEcce--EeccCceecccccccccceeeeeeeecce
Q 040824 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGK--QLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 2 ~v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~~g~--~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (154)
++.+|.. +|+.+.-+...++++... .+... -|-|+.+|. ..-|..+..++.+..+..=.-..-...+|
T Consensus 38 r~klknl~tG~~~e~tf~s~ek~e~a--------~ve~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~ 109 (185)
T PRK12426 38 KVSLQAADSDVVVERNFKAGQEVKEA--------QFEPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGV 109 (185)
T ss_pred EEEEEEcCCCCeEEEEECCCCeEEEe--------EEEeeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCC
Confidence 4455544 566677777777766432 12222 244444553 23455666666654322111112233455
Q ss_pred eeeeeecCCceEEEeeCC
Q 040824 78 MIKVKTLTGKEIEIDIEP 95 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~ 95 (154)
.+.+..-+|+.+.++++.
T Consensus 110 ~v~v~~~~~~~i~v~lP~ 127 (185)
T PRK12426 110 TVSALVYDGTVFSVELPH 127 (185)
T ss_pred EEEEEEECCEEEEEECCC
Confidence 555555566666655544
No 399
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=25.38 E-value=1.3e+02 Score=16.64 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=12.0
Q ss_pred cCCCCCceeEEECCeecCC
Q 040824 110 EGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 110 ~~i~~~~~~l~~~g~~l~d 128 (154)
.|.|.....|..+|..+..
T Consensus 11 ~g~P~p~i~W~~~g~~~~~ 29 (76)
T cd04978 11 EGIPQPTITWRLNGVPIEE 29 (76)
T ss_pred eeeCCCEEEEEECCEECCC
Confidence 3556556777777776653
No 400
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=25.32 E-value=2.1e+02 Score=19.53 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=30.6
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~ 44 (154)
...+.+.|+++++=.++|..|+..+++.+...+-.
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~ 56 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIF 56 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 35689999999999999999999999998776654
No 401
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=24.45 E-value=1.3e+02 Score=19.71 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=45.1
Q ss_pred eeeee-cCCceEEEeeCCCchHHHHHHHHhhhcC--CCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEeecCC
Q 040824 79 IKVKT-LTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLALRGG 152 (154)
Q Consensus 79 i~v~~-~~~~~~~~~v~~~~tv~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~~gg 152 (154)
..+++ .+|...-+.. ++-+.|++-++.... .+.++++|-.+|..-.+-+.+.+..+ -++|.|.+.+...|+
T Consensus 17 aivqd~~tg~VLMlay---mn~eAl~~Tl~tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~Ll~~V~q~G~ 91 (125)
T PRK00051 17 AIAQDAETGEVLMVAW---MNEEALAKTLETGRAHYWSRSRQKLWRKGETSGHVQKVHEVRLDCDGDAVLLKVEQVGA 91 (125)
T ss_pred EEEEECCCCCEEEEEE---cCHHHHHHHHhcCcEEEEeCccCcccCCCCCcCCeEEEEEEEecCCCCEEEEEEEecCC
Confidence 34444 3555443332 334566666665544 46677778788865555556777766 788999999988874
No 402
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=24.37 E-value=2.7e+02 Score=20.44 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=35.1
Q ss_pred EEEEEeCCCCE--EEEEEeCCCcHHHHHHHHHhH--------hCCCCCCeEEEEcceEeccCce
Q 040824 2 QIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLEDGRT 55 (154)
Q Consensus 2 ~v~v~~~~~~~--~~~~v~~~~tv~~lk~~i~~~--------~~~~~~~q~L~~~g~~L~d~~~ 55 (154)
.|..-.++|.- -.+.+..++||.++-++..+. ..+.++..-++-.+-++-.+.+
T Consensus 100 ~I~fsywDGs~hrr~v~vKKGdtI~~FL~~~r~~l~~~f~el~~vsvd~LM~VkedlIiPHhy~ 163 (239)
T PF04921_consen 100 EIPFSYWDGSGHRRTVRVKKGDTIWQFLEKCRKQLAKEFRELRRVSVDDLMYVKEDLIIPHHYT 163 (239)
T ss_pred EEEEEEECCCCCcceEEEcCCCCHHHHHHHHHHHHHHHhHHHHhcCHhheeeeccceeccCCce
Confidence 46667777744 368999999999998888776 2355554444444444433333
No 403
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=24.35 E-value=51 Score=18.29 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=16.8
Q ss_pred eeCCCchHHHHHHHHhhhcCCCCCc
Q 040824 92 DIEPTDTIERIKERVEEKEGIPPVQ 116 (154)
Q Consensus 92 ~v~~~~tv~~LK~~i~~~~~i~~~~ 116 (154)
.++...|+.++-+.+++.++++++.
T Consensus 25 ~~~g~~t~~ei~~~l~~~y~~~~~~ 49 (68)
T PF05402_consen 25 LLDGPRTVEEIVDALAEEYDVDPEE 49 (68)
T ss_dssp H--SSS-HHHHHHHHHHHTT--HHH
T ss_pred HccCCCCHHHHHHHHHHHcCCCHHH
Confidence 3566789999999999999988753
No 404
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=23.93 E-value=3.3e+02 Score=20.79 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=44.5
Q ss_pred EeeCCCchHHHHHHHHhhhc--------------C-CCCCceeEEECCeecCCCCcccccc---cCCCCEEEEEEeecC
Q 040824 91 IDIEPTDTIERIKERVEEKE--------------G-IPPVQQRLIYAGKQLADDKTARDYN---IEGGSVLHLVLALRG 151 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~--------------~-i~~~~~~l~~~g~~l~d~~~L~~~~---i~~~~~i~~~~~~~g 151 (154)
+..+.-..|..++..|+++. . -|.+-..|+++|..|..+.||+... .+.+..|.+..|..+
T Consensus 252 L~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 252 LNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred ecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 44444456888888888888 2 3455568889999999999887764 577787778777653
No 405
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=23.70 E-value=1.5e+02 Score=17.75 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 94 EPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 94 ~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.++-+-.+++.++++.++++++...+.
T Consensus 10 ~~Tpsr~ei~~klA~~~~~~~~~ivv~ 36 (84)
T PF01282_consen 10 KPTPSRKEIREKLAAMLNVDPDLIVVF 36 (84)
T ss_dssp SSS--HHHHHHHHHHHHTSTGCCEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCCCCeEEEe
Confidence 356678999999999999988776553
No 406
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=23.64 E-value=1.5e+02 Score=16.61 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=30.6
Q ss_pred EEEeeCCCchHHHHHHHHhhhc--CCCCCceeEEECCeecCC
Q 040824 89 IEIDIEPTDTIERIKERVEEKE--GIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~--~i~~~~~~l~~~g~~l~d 128 (154)
-++.|+.+.|..+|-+.+.+.. .-.+-.+.++.+|..+.+
T Consensus 18 ~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 18 TPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRT 59 (65)
T ss_pred CCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeec
Confidence 4578888999999999998887 345556777788876654
No 407
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=23.60 E-value=2.6e+02 Score=23.89 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=44.4
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
.|+|-++.|.. +.++...|+.|+-..+....|.....-+ .+|+.. ..++.+++||+|.++-.-
T Consensus 361 ~i~vfTPkG~~--~~lp~gst~~DfAy~ih~~~g~~~~~a~--vng~~v-----~l~~~l~~gd~vei~t~~ 423 (683)
T TIGR00691 361 EIYVFTPKGDV--VELPSGSTPVDFAYAVHTDVGNKCTGAK--VNGKIV-----PLDKELENGDVVEIITGK 423 (683)
T ss_pred ceEEECCCCeE--EEcCCCCCHHHHHHHHhHHhHhceeEEE--ECCEEC-----CCCccCCCCCEEEEEeCC
Confidence 56666777775 6778899999999888877665432222 466544 456688999999987554
No 408
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=23.37 E-value=1.2e+02 Score=17.08 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=10.9
Q ss_pred hcCCCCCceeEEECCeecC
Q 040824 109 KEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 109 ~~~i~~~~~~l~~~g~~l~ 127 (154)
..|.|+....|..+|..+.
T Consensus 10 ~~g~P~p~v~W~k~~~~l~ 28 (73)
T cd05852 10 PKAAPKPKFSWSKGTELLV 28 (73)
T ss_pred cceeCCCEEEEEeCCEecc
Confidence 3455555666666666554
No 409
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=23.25 E-value=1.5e+02 Score=16.66 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=15.8
Q ss_pred hhhcCCCCCceeEEECCeecC
Q 040824 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~~i~~~~~~l~~~g~~l~ 127 (154)
++..|.|+-...|..+|..+.
T Consensus 5 C~~~G~P~P~v~W~k~g~~l~ 25 (77)
T cd05733 5 CEAKGNPPPTFSWTRNGTHFD 25 (77)
T ss_pred eeCcccCCCeEEEEECCeECC
Confidence 345677877889988888775
No 410
>KOG4261 consensus Talin [Cytoskeleton]
Probab=22.56 E-value=1.6e+02 Score=25.73 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=45.4
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCC---CCCceeEEE------CCeecCCCCcccccccCCCCEEEEE
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGI---PPVQQRLIY------AGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i---~~~~~~l~~------~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.-.+.+.|+.+|-+--+.|.+++.- -+....|+. +|-.++.++++.+|.+.+++++..-
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~ 81 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYK 81 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchh
Confidence 3457889999999999888887752 244555543 4567899999999999999998754
No 411
>PF01577 Peptidase_S30: Potyvirus P1 protease; InterPro: IPR002540 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The potyviridae are a family of positive strand RNA viruses, members of which include Zucchini yellow mosaic virus, and Turnip mosaic virus (strain Japanese) which cause considerable losses of crops worldwide. This entry represents a C-terminal region from various plant potyvirus P1 proteins (found at the N terminus of the polyprotein). The C terminus of P1 is a serine peptidase belonging to MEROPS peptidase family S30 (clan PA(S)). It is the protease responsible for autocatalytic cleavage between P1 and the helper component protease, which is a cysteine peptidase belonging to MEROPS peptidase family C6 IPR001456 from INTERPRO [, ]. The P1 protein may be involved in virus-host interactions [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=22.47 E-value=3e+02 Score=19.72 Aligned_cols=72 Identities=14% Similarity=0.055 Sum_probs=47.1
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcC--CCCCceeE-EECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRL-IYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~--i~~~~~~l-~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
.+.+....|.....++..+.....+-..++.... ...+...+ -+.|-.++...... .+-..++.+.|--+..
T Consensus 151 kv~~~He~G~~~r~Dl~~~~~~~~i~~~~a~~~~~~~~~~~~~~~G~SG~vl~~~~~~~-~~~~~~~~FIVRGr~~ 225 (245)
T PF01577_consen 151 KVETKHERGKRKRRDLNIDEFTESILRLLAKKTYRGRIVDDIKIKGDSGLVLPRRKLIG-FGRTRDDFFIVRGRHE 225 (245)
T ss_pred EEECCccCCCcccEECCccHHHHHHHHHHHhhcCCCcccccceeccceEEEEeCCcccC-ccccCCCeEEEEeccC
Confidence 3444566777777888888888888888877654 44555566 45666777666555 6666666554544443
No 412
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=22.08 E-value=71 Score=18.71 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=18.3
Q ss_pred hcCCCCCceeEEECCeecCCCC
Q 040824 109 KEGIPPVQQRLIYAGKQLADDK 130 (154)
Q Consensus 109 ~~~i~~~~~~l~~~g~~l~d~~ 130 (154)
..|.|.-..+|+.+|++|.++.
T Consensus 7 v~G~P~Pti~W~kng~~l~~~~ 28 (79)
T cd05855 7 VKGNPKPTLQWFHEGAILNESE 28 (79)
T ss_pred EeEeCCCceEEEECCEECCCCc
Confidence 4578899999999999997654
No 413
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=21.66 E-value=69 Score=21.98 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 95 PTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 95 ~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+....++++.++..+|+|+++..+.
T Consensus 162 ~~~~~~~i~~~la~~~~i~~~~I~V~ 187 (188)
T PF09581_consen 162 DSEEEEEIKQYLADFYGISPEQIKVY 187 (188)
T ss_pred chHHHHHHHHHHHHHhCCCHHHeEEe
Confidence 35678999999999999999988764
No 414
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=21.58 E-value=1.8e+02 Score=17.13 Aligned_cols=43 Identities=30% Similarity=0.552 Sum_probs=31.3
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCC---CCceeEE-ECCeecC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP---PVQQRLI-YAGKQLA 127 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~---~~~~~l~-~~g~~l~ 127 (154)
+|+.+.+.++..+++.-+-++...+.+.+ +...++. ++|..+.
T Consensus 8 ng~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~~ 54 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKLS 54 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEee
Confidence 67788888888888888888888777754 3445555 7776654
No 415
>PRK13605 endoribonuclease SymE; Provisional
Probab=21.51 E-value=1.3e+02 Score=19.18 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=26.0
Q ss_pred EEEEEeCCCCEEEEEEeC-CCcHHHHHHHHHhHhCCCCCCe
Q 040824 2 QIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQ 41 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~-~~tv~~lk~~i~~~~~~~~~~q 41 (154)
.|.|+..+|. +.+...+ .-...+|.+.+++...+....|
T Consensus 57 ~V~V~V~~G~-LVIt~~~~~~~~~el~~~l~~v~~~s~~kq 96 (113)
T PRK13605 57 AVDVRVMEGC-IVLTAQPPAAEESELMQSLRQVCKLSARKQ 96 (113)
T ss_pred eEEEEEeCCE-EEEEeCCCCcccHHHHHHHHHHHHhhhHHH
Confidence 5677776666 4455444 3458899999988876665544
No 416
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=21.45 E-value=1e+02 Score=17.27 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=10.5
Q ss_pred CCCCCceeEEECCeecCC
Q 040824 111 GIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 111 ~i~~~~~~l~~~g~~l~d 128 (154)
|.|.....|..+|..+..
T Consensus 12 G~P~p~i~W~k~g~~i~~ 29 (76)
T cd05867 12 GIPTPNITWSINGAPIEG 29 (76)
T ss_pred EeCCCeEEEEECCEECCC
Confidence 455556666666665543
No 417
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=21.40 E-value=2.7e+02 Score=18.79 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=29.2
Q ss_pred EEEEEeCCC-cHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceeccccc
Q 040824 13 ITLEVESSD-TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61 (154)
Q Consensus 13 ~~~~v~~~~-tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i 61 (154)
+.+++.+.+ ++.++++...+.+.+..+ ++-|+.+....|+.+|--
T Consensus 85 i~~eie~e~~~~e~ie~ic~e~lPf~y~----v~vG~F~r~kpTVTDy~K 130 (165)
T COG4055 85 IILEIEDEDETMEKIEEICDEMLPFGYE----VRVGKFTRRKPTVTDYIK 130 (165)
T ss_pred EEEEecCcHhHHHHHHHHHHHhCCCcee----eeeeeeeccCCcchhhhh
Confidence 667776664 677666655555433321 256888888889888863
No 418
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=21.33 E-value=1.8e+02 Score=24.03 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=46.5
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEE-Ec-----ceEeccCce----ecccccccccceeee
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA-----GKQLEDGRT----LADYNIQKESTLHLV 70 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~-~~-----g~~L~d~~~----l~~~~i~~~~~i~l~ 70 (154)
|+|-.-+|....+.|+..+|..++.+.+.++.++..+ +=.|+ +. -+.++|+.. ++.+....+..+.+.
T Consensus 191 VKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~P~L~iER~fEDHElVVEvls~W~~dseNK~lF~ 269 (622)
T KOG3751|consen 191 VKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHYPHLQIERVFEDHELVVEVLSMWTQDSENKLLFR 269 (622)
T ss_pred EEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeecchhhhhhhhhhHHHHHHHHhhcccCCCceeEEe
Confidence 5666678899999999999999999999999875533 33333 22 255666653 455555556666443
No 419
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=21.31 E-value=59 Score=17.45 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=14.0
Q ss_pred CchHHHHHHHHhhhcCCCCCce
Q 040824 96 TDTIERIKERVEEKEGIPPVQQ 117 (154)
Q Consensus 96 ~~tv~~LK~~i~~~~~i~~~~~ 117 (154)
+.|..++++++++.+|++....
T Consensus 20 ~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 20 TVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp G--HHHHHHHHHHH-SS--SHH
T ss_pred HhhHHHHHHHHHHHHCCCcHHH
Confidence 3578999999999999886643
No 420
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=21.14 E-value=2.1e+02 Score=17.36 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.4
Q ss_pred EEEeeCCCchHHHHHHHHhhhcC-CCCCceeEEECCe
Q 040824 89 IEIDIEPTDTIERIKERVEEKEG-IPPVQQRLIYAGK 124 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~-i~~~~~~l~~~g~ 124 (154)
+.+.-+.+.|..+|+++++..+. +....+.+.|...
T Consensus 19 f~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~De 55 (87)
T cd06402 19 FAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDE 55 (87)
T ss_pred EEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECC
Confidence 44444666788999999999985 4445667777643
No 421
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=20.98 E-value=2.4e+02 Score=17.94 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=22.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
++|++...+|+...+++..++|+.+.-++
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~ 29 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHE 29 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 46777677898899999999988776443
No 422
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=20.62 E-value=1.9e+02 Score=16.82 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.4
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
.+.++..+|+.++-.+|....+-..-.- +.++ +....-.+|-+++||+++++
T Consensus 24 ~~~l~~GaTv~D~A~~IHtdi~~~f~~A-i~~k----~~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 24 AFLLPKGSTARDLAYAIHTDIGDGFLHA-IDAR----TGRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhcceee-EEee----CCEEeCCCcEecCCCEEEEe
Confidence 3666778999999998876655221000 1111 22344456778999999875
No 423
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=20.59 E-value=1.9e+02 Score=20.99 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.9
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHh
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKE 34 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~ 34 (154)
+.|.+++.+++||.+.-..|.+..
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~~ 47 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREEQ 47 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcC
Confidence 447788889999999999998763
No 424
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=20.45 E-value=1.4e+02 Score=17.41 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=8.9
Q ss_pred CCCCCceeEEECCeecC
Q 040824 111 GIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 111 ~i~~~~~~l~~~g~~l~ 127 (154)
|.|.....|..+|..+.
T Consensus 29 g~P~p~v~W~k~g~~l~ 45 (92)
T cd05747 29 GEPAPTVTWMREGQIIV 45 (92)
T ss_pred ecCCCEEEEEECCEECC
Confidence 44444455555555554
No 425
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=20.04 E-value=1.2e+02 Score=17.64 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=16.7
Q ss_pred CcccccccCCCCEEEEEEeec
Q 040824 130 KTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP 44 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAP 44 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 567888899999888876665
Done!