Query 040824
Match_columns 154
No_of_seqs 175 out of 1804
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 19:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 4.1E-42 1.4E-46 232.7 18.5 153 1-153 3-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 2.7E-41 9.4E-46 231.3 17.4 152 1-152 21-172 (172)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 6.2E-40 2.1E-44 220.3 19.2 152 1-152 1-152 (152)
4 4fbj_B NEDD8; effector-HOST ta 99.9 2.1E-22 7.1E-27 123.0 9.1 77 77-153 1-77 (88)
5 3phx_B Ubiquitin-like protein 99.9 5.1E-22 1.8E-26 118.9 10.1 77 75-151 3-79 (79)
6 1sif_A Ubiquitin; hydrophobic 99.9 7.7E-22 2.6E-26 120.5 9.1 80 75-154 8-87 (88)
7 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 1.3E-21 4.6E-26 119.2 9.7 80 75-154 6-85 (87)
8 3n3k_B Ubiquitin; hydrolase, p 99.9 1E-21 3.5E-26 119.2 8.7 78 76-153 3-80 (85)
9 3dbh_I NEDD8; cell cycle, acti 99.9 1.2E-21 4E-26 119.6 8.8 79 74-152 10-88 (88)
10 1ndd_A NEDD8, protein (ubiquit 99.9 2.1E-21 7.2E-26 115.2 9.6 76 77-152 1-76 (76)
11 3mtn_B UBA80, ubcep1, ubiquiti 99.9 2.4E-21 8.3E-26 117.4 9.5 78 76-153 3-80 (85)
12 4hcn_B Polyubiquitin, ubiquiti 99.9 1.9E-21 6.6E-26 121.0 9.1 79 74-152 20-98 (98)
13 4eew_A Large proline-rich prot 99.9 2.3E-21 7.8E-26 118.4 9.1 87 61-148 2-88 (88)
14 3a9j_A Ubiquitin; protein comp 99.9 4E-21 1.4E-25 114.0 9.9 76 77-152 1-76 (76)
15 3plu_A Ubiquitin-like modifier 99.9 3.1E-21 1E-25 117.0 9.2 76 72-147 17-92 (93)
16 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 4.2E-21 1.5E-25 119.0 9.7 78 76-153 1-78 (96)
17 2uyz_B Small ubiquitin-related 99.9 2E-21 6.8E-26 116.4 7.9 77 76-152 3-79 (79)
18 2hj8_A Interferon-induced 17 k 99.8 2.8E-21 9.5E-26 118.0 7.8 79 75-153 3-81 (88)
19 2kdi_A Ubiquitin, vacuolar pro 99.8 3.2E-22 1.1E-26 127.7 3.7 101 1-101 10-113 (114)
20 2ojr_A Ubiquitin; lanthide-bin 99.8 1E-20 3.5E-25 120.2 10.4 92 61-152 12-111 (111)
21 2kan_A Uncharacterized protein 99.8 8.8E-21 3E-25 117.0 9.1 79 74-153 13-92 (94)
22 1wyw_B Ubiquitin-like protein 99.8 5.8E-21 2E-25 118.6 8.2 79 74-152 19-97 (97)
23 3vdz_A Ubiquitin-40S ribosomal 99.8 1.4E-20 4.8E-25 119.6 9.9 78 75-152 34-111 (111)
24 1wy8_A NP95-like ring finger p 99.8 2.2E-20 7.4E-25 114.3 10.0 79 75-153 6-86 (89)
25 3phx_B Ubiquitin-like protein 99.8 1.5E-20 5E-25 112.5 9.0 74 1-74 5-78 (79)
26 4fbj_B NEDD8; effector-HOST ta 99.8 1.9E-20 6.4E-25 114.3 8.8 77 1-77 1-77 (88)
27 2l7r_A Ubiquitin-like protein 99.8 1.3E-20 4.3E-25 116.2 8.0 77 74-152 17-93 (93)
28 1we6_A Splicing factor, putati 99.8 1.8E-20 6.2E-25 119.1 8.6 82 73-154 24-109 (111)
29 3v6c_B Ubiquitin; structural g 99.8 3.2E-20 1.1E-24 114.0 9.4 77 74-150 15-91 (91)
30 1yx5_B Ubiquitin; proteasome, 99.8 4.6E-20 1.6E-24 114.8 10.0 77 77-153 1-77 (98)
31 3plu_A Ubiquitin-like modifier 99.8 2.8E-20 9.5E-25 112.8 8.4 70 1-70 22-91 (93)
32 1yx5_B Ubiquitin; proteasome, 99.8 3.8E-20 1.3E-24 115.2 9.3 88 1-88 1-88 (98)
33 4dwf_A HLA-B-associated transc 99.8 5.4E-20 1.9E-24 112.7 9.3 77 75-152 4-80 (90)
34 2kk8_A Uncharacterized protein 99.8 3.2E-20 1.1E-24 112.2 8.0 73 1-73 11-84 (84)
35 3l0w_B Monoubiquitinated proli 99.8 1.1E-19 3.7E-24 123.4 10.1 77 77-153 1-77 (169)
36 1ndd_A NEDD8, protein (ubiquit 99.8 1.2E-19 4E-24 107.6 9.1 75 1-75 1-75 (76)
37 1wgd_A Homocysteine-responsive 99.8 7.1E-20 2.4E-24 112.8 8.4 79 75-153 6-90 (93)
38 2faz_A Ubiquitin-like containi 99.8 1.5E-19 5.3E-24 107.8 9.6 75 75-149 1-77 (78)
39 2kk8_A Uncharacterized protein 99.8 9.2E-20 3.1E-24 110.2 8.4 74 75-148 9-83 (84)
40 3q3f_A Ribonuclease/ubiquitin 99.8 1.2E-19 4E-24 124.6 9.7 80 74-153 103-182 (189)
41 3a9j_A Ubiquitin; protein comp 99.8 1.9E-19 6.4E-24 106.7 9.3 75 1-75 1-75 (76)
42 4hcn_B Polyubiquitin, ubiquiti 99.8 1.4E-19 4.8E-24 112.5 9.1 75 1-75 23-97 (98)
43 3v6c_B Ubiquitin; structural g 99.8 1.2E-19 4.2E-24 111.4 8.5 73 1-73 18-90 (91)
44 3dbh_I NEDD8; cell cycle, acti 99.8 1.2E-19 3.9E-24 110.7 8.2 75 1-75 13-87 (88)
45 2kdi_A Ubiquitin, vacuolar pro 99.8 2.5E-19 8.5E-24 114.2 10.1 80 74-153 7-86 (114)
46 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.1E-19 7.3E-24 111.3 9.2 79 1-79 2-80 (96)
47 1sif_A Ubiquitin; hydrophobic 99.8 2E-19 6.7E-24 109.7 8.8 75 1-75 10-84 (88)
48 3n3k_B Ubiquitin; hydrolase, p 99.8 1.5E-19 5.3E-24 109.4 8.1 75 1-75 4-78 (85)
49 4dwf_A HLA-B-associated transc 99.8 2.5E-19 8.6E-24 109.7 9.1 74 1-75 6-79 (90)
50 1we7_A SF3A1 protein; structur 99.8 2.5E-19 8.4E-24 114.5 9.2 80 75-154 24-113 (115)
51 3mtn_B UBA80, ubcep1, ubiquiti 99.8 3.2E-19 1.1E-23 108.0 8.7 75 1-75 4-78 (85)
52 2lxa_A Ubiquitin-like protein 99.8 1.4E-19 4.8E-24 109.7 7.0 73 1-73 2-78 (87)
53 2dzi_A Ubiquitin-like protein 99.8 3.6E-19 1.2E-23 106.8 8.8 76 75-150 6-81 (81)
54 1uel_A HHR23B, UV excision rep 99.8 6.9E-19 2.4E-23 108.8 10.2 76 77-152 1-79 (95)
55 4eew_A Large proline-rich prot 99.8 3.9E-19 1.3E-23 108.4 8.9 71 1-72 18-88 (88)
56 3m63_B Ubiquitin domain-contai 99.8 7.5E-20 2.6E-24 114.2 5.9 92 54-148 8-99 (101)
57 1uh6_A Ubiquitin-like 5; beta- 99.8 1.5E-19 5.3E-24 111.5 7.1 70 1-70 29-98 (100)
58 2uyz_B Small ubiquitin-related 99.8 2.1E-19 7.1E-24 107.5 7.5 75 1-75 4-78 (79)
59 1uh6_A Ubiquitin-like 5; beta- 99.8 2.2E-19 7.5E-24 110.8 7.6 72 76-147 28-99 (100)
60 2faz_A Ubiquitin-like containi 99.8 3.4E-19 1.2E-23 106.3 8.3 73 1-73 3-77 (78)
61 2hj8_A Interferon-induced 17 k 99.8 1.9E-19 6.7E-24 109.8 7.1 75 1-75 5-79 (88)
62 3l0w_B Monoubiquitinated proli 99.8 1.4E-18 4.8E-23 117.9 11.9 83 1-83 1-83 (169)
63 1yqb_A Ubiquilin 3; structural 99.8 4.2E-19 1.4E-23 110.7 8.6 79 74-153 20-98 (100)
64 3u5e_m 60S ribosomal protein L 99.8 6.5E-21 2.2E-25 124.1 0.3 78 77-154 1-78 (128)
65 2dzi_A Ubiquitin-like protein 99.8 7.3E-19 2.5E-23 105.5 9.3 73 1-73 8-80 (81)
66 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 4.9E-19 1.7E-23 107.7 8.5 76 1-76 8-83 (87)
67 1wx8_A Riken cDNA 4931431F19; 99.8 1.7E-19 5.8E-24 111.8 6.4 78 75-153 16-93 (96)
68 2lxa_A Ubiquitin-like protein 99.8 2.9E-19 9.9E-24 108.3 7.1 73 77-149 2-78 (87)
69 3b1l_X E3 ubiquitin-protein li 99.7 7.2E-21 2.5E-25 113.0 0.0 75 77-151 1-75 (76)
70 1uel_A HHR23B, UV excision rep 99.8 1.2E-18 4.1E-23 107.7 9.9 74 1-74 1-77 (95)
71 2wyq_A HHR23A, UV excision rep 99.8 1.6E-18 5.4E-23 105.0 10.2 76 75-150 4-82 (85)
72 3m62_B UV excision repair prot 99.8 5.6E-19 1.9E-23 111.3 8.3 74 77-150 2-75 (106)
73 3m62_B UV excision repair prot 99.8 3E-19 1E-23 112.5 7.0 74 1-74 2-75 (106)
74 3vdz_A Ubiquitin-40S ribosomal 99.8 7.4E-19 2.5E-23 111.6 8.8 75 1-75 36-110 (111)
75 4a20_A Ubiquitin-like protein 99.8 9.6E-19 3.3E-23 108.3 9.0 76 74-149 17-96 (98)
76 1j8c_A Ubiquitin-like protein 99.8 1.2E-18 4.1E-23 112.6 9.6 78 75-153 31-108 (125)
77 2wyq_A HHR23A, UV excision rep 99.8 1.2E-18 4.1E-23 105.5 8.9 74 1-74 6-82 (85)
78 2kan_A Uncharacterized protein 99.8 9.8E-19 3.3E-23 107.8 8.6 75 1-76 16-91 (94)
79 1wy8_A NP95-like ring finger p 99.8 1.2E-18 4E-23 106.5 8.9 76 1-76 8-85 (89)
80 3q3f_A Ribonuclease/ubiquitin 99.8 5.7E-19 2E-23 121.2 8.0 83 1-83 106-188 (189)
81 1wju_A NEDD8 ultimate buster-1 99.8 8.7E-19 3E-23 108.2 8.0 66 86-152 29-94 (100)
82 4a20_A Ubiquitin-like protein 99.8 1E-18 3.4E-23 108.2 8.2 73 1-73 20-96 (98)
83 2bwf_A Ubiquitin-like protein 99.8 2.6E-18 9E-23 102.1 9.7 71 77-148 5-75 (77)
84 2bwf_A Ubiquitin-like protein 99.8 1.6E-18 5.4E-23 103.0 8.6 72 1-73 5-76 (77)
85 1wyw_B Ubiquitin-like protein 99.8 8E-19 2.7E-23 108.9 7.5 75 1-75 22-96 (97)
86 3u5c_f 40S ribosomal protein S 99.8 1.9E-20 6.4E-25 124.7 0.0 77 77-153 1-77 (152)
87 2klc_A Ubiquilin-1; ubiquitin- 99.8 3.3E-18 1.1E-22 106.8 9.9 79 73-152 22-100 (101)
88 1ttn_A DC-UBP, dendritic cell- 99.8 2.4E-18 8.3E-23 108.3 9.3 79 74-152 21-99 (106)
89 1wx7_A Ubiquilin 3; ubiquitin- 99.8 1.9E-18 6.6E-23 108.8 8.6 78 75-153 16-93 (106)
90 2l7r_A Ubiquitin-like protein 99.8 1.8E-18 6E-23 106.5 7.7 73 1-75 20-92 (93)
91 1v5o_A 1700011N24RIK protein; 99.8 1.8E-18 6E-23 108.3 7.8 79 75-153 6-89 (102)
92 2fnj_B Transcription elongatio 99.8 2E-18 6.7E-23 109.5 7.9 76 77-153 1-84 (118)
93 3b1l_X E3 ubiquitin-protein li 99.6 4.1E-20 1.4E-24 109.8 0.0 75 1-75 1-75 (76)
94 3u30_A Ubiquitin, linear DI-ub 99.8 5E-18 1.7E-22 115.7 10.2 79 74-152 18-96 (172)
95 1wgd_A Homocysteine-responsive 99.8 2.6E-18 8.8E-23 105.8 7.9 75 1-75 8-88 (93)
96 1v2y_A 3300001G02RIK protein; 99.8 1E-18 3.5E-23 109.1 5.3 77 76-152 7-99 (105)
97 2ojr_A Ubiquitin; lanthide-bin 99.7 8.2E-18 2.8E-22 106.8 9.5 75 1-75 36-110 (111)
98 1se9_A Ubiquitin family; ubiqu 99.7 9.4E-18 3.2E-22 107.5 9.7 79 75-153 15-107 (126)
99 4ajy_B Transcription elongatio 99.7 5.9E-18 2E-22 106.9 8.4 75 1-75 1-83 (118)
100 1ttn_A DC-UBP, dendritic cell- 99.7 3.9E-18 1.3E-22 107.4 7.5 74 1-74 24-97 (106)
101 4ajy_B Transcription elongatio 99.7 7.8E-18 2.7E-22 106.3 8.6 75 77-152 1-83 (118)
102 1yqb_A Ubiquilin 3; structural 99.7 5.2E-18 1.8E-22 105.7 7.8 74 1-75 23-96 (100)
103 2klc_A Ubiquilin-1; ubiquitin- 99.7 9.9E-18 3.4E-22 104.6 9.0 73 1-74 26-98 (101)
104 1wx8_A Riken cDNA 4931431F19; 99.7 3.9E-18 1.3E-22 105.6 7.1 74 1-75 18-91 (96)
105 3rt3_B Ubiquitin-like protein 99.7 1.1E-17 3.8E-22 112.6 8.9 76 1-76 82-157 (159)
106 2fnj_B Transcription elongatio 99.7 8.7E-18 3E-22 106.5 7.7 72 1-72 1-80 (118)
107 1v2y_A 3300001G02RIK protein; 99.7 2.6E-18 9E-23 107.2 5.2 75 1-75 8-98 (105)
108 1j8c_A Ubiquitin-like protein 99.7 2.2E-17 7.4E-22 106.8 9.4 74 1-75 33-106 (125)
109 1wju_A NEDD8 ultimate buster-1 99.7 1.4E-17 4.8E-22 102.8 7.9 69 2-70 17-89 (100)
110 4dbg_A Ranbp-type and C3HC4-ty 99.7 3.7E-17 1.3E-21 101.7 9.7 72 77-148 25-99 (105)
111 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.1E-17 1.4E-21 103.6 10.1 80 73-152 13-102 (116)
112 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.8E-17 6.3E-22 104.3 8.3 74 1-75 18-91 (106)
113 1we6_A Splicing factor, putati 99.7 1.1E-17 3.7E-22 106.2 6.7 76 1-76 28-107 (111)
114 1v5o_A 1700011N24RIK protein; 99.7 2.1E-17 7.1E-22 103.4 7.7 75 1-75 8-87 (102)
115 3m63_B Ubiquitin domain-contai 99.7 5.5E-18 1.9E-22 105.7 4.9 71 1-72 29-99 (101)
116 2gow_A HCG-1 protein, ubiquiti 99.7 3E-17 1E-21 105.6 8.4 78 75-152 16-103 (125)
117 3u5e_m 60S ribosomal protein L 99.7 4.8E-19 1.7E-23 115.2 0.0 76 1-76 1-76 (128)
118 3b08_A Polyubiquitin-C, ubiqui 99.7 5.5E-17 1.9E-21 108.2 9.9 76 77-152 1-76 (152)
119 2daf_A FLJ35834 protein; hypot 99.7 3.1E-17 1.1E-21 103.0 8.0 77 2-78 17-94 (118)
120 2io1_B Small ubiquitin-related 99.7 5.3E-17 1.8E-21 99.7 8.9 79 75-153 6-84 (94)
121 1v5t_A 8430435I17RIK protein; 99.7 4.4E-17 1.5E-21 99.6 8.1 74 75-149 6-83 (90)
122 2kdb_A Homocysteine-responsive 99.7 2.7E-17 9.3E-22 101.9 7.0 70 1-70 24-99 (99)
123 1wgg_A Ubiquitin carboxyl-term 99.7 3E-17 1E-21 101.4 7.0 72 1-74 8-80 (96)
124 2kd0_A LRR repeats and ubiquit 99.7 8.4E-17 2.9E-21 97.3 8.8 69 80-148 15-83 (85)
125 2kd0_A LRR repeats and ubiquit 99.7 7.6E-17 2.6E-21 97.5 8.5 70 3-72 14-83 (85)
126 1wgh_A Ubiquitin-like 3, HCG-1 99.7 9.4E-17 3.2E-21 101.9 9.1 74 1-74 17-100 (116)
127 4dbg_A Ranbp-type and C3HC4-ty 99.7 9.3E-17 3.2E-21 99.9 8.7 73 1-73 25-100 (105)
128 1v5t_A 8430435I17RIK protein; 99.7 3.6E-17 1.2E-21 100.0 6.6 73 1-74 8-84 (90)
129 2kdb_A Homocysteine-responsive 99.7 4.4E-17 1.5E-21 101.0 7.0 72 75-146 22-99 (99)
130 3u5c_f 40S ribosomal protein S 99.7 1.4E-18 4.8E-23 115.6 0.0 76 1-76 1-76 (152)
131 2io0_B Small ubiquitin-related 99.7 2E-16 6.7E-21 96.5 9.5 79 75-153 4-82 (91)
132 1wia_A Hypothetical ubiquitin- 99.7 1.3E-16 4.6E-21 98.4 8.7 74 75-151 6-80 (95)
133 1se9_A Ubiquitin family; ubiqu 99.7 1.3E-16 4.3E-21 102.3 8.5 75 1-75 17-105 (126)
134 1x1m_A Ubiquitin-like protein 99.7 1.7E-16 6E-21 100.0 8.9 76 75-150 11-101 (107)
135 1we7_A SF3A1 protein; structur 99.7 1.1E-16 3.9E-21 102.1 8.1 76 1-76 26-111 (115)
136 1wgg_A Ubiquitin carboxyl-term 99.7 9.2E-17 3.2E-21 99.3 7.3 71 76-148 7-78 (96)
137 1wia_A Hypothetical ubiquitin- 99.7 1.1E-16 3.8E-21 98.8 7.5 71 1-74 8-79 (95)
138 1x1m_A Ubiquitin-like protein 99.7 9.1E-17 3.1E-21 101.3 7.2 74 1-74 13-101 (107)
139 2gow_A HCG-1 protein, ubiquiti 99.7 9.9E-17 3.4E-21 103.2 7.4 74 1-74 18-101 (125)
140 1wxv_A BAG-family molecular ch 99.7 2E-16 7E-21 97.1 8.4 73 1-74 8-86 (92)
141 2daf_A FLJ35834 protein; hypot 99.7 4.2E-16 1.4E-20 97.9 8.9 73 77-149 16-89 (118)
142 1wxv_A BAG-family molecular ch 99.7 3.9E-16 1.3E-20 95.8 8.2 74 75-149 6-85 (92)
143 2xzm_9 RPS31E; ribosome, trans 99.7 7E-18 2.4E-22 115.2 0.3 73 77-154 1-73 (189)
144 2dzm_A FAS-associated factor 1 99.7 3E-16 1E-20 97.2 6.8 73 1-74 9-83 (100)
145 2d07_B Ubiquitin-like protein 99.7 8.7E-16 3E-20 94.2 8.8 78 75-152 16-93 (93)
146 1v86_A DNA segment, CHR 7, way 99.6 9.6E-17 3.3E-21 99.0 4.6 71 1-73 18-88 (95)
147 4b6w_A Tubulin-specific chaper 99.6 4.8E-16 1.6E-20 94.0 7.5 66 85-150 13-85 (86)
148 3ai5_A Yeast enhanced green fl 99.6 9.4E-16 3.2E-20 112.2 10.3 78 73-150 230-307 (307)
149 2kjr_A CG11242; UBL, ubiquitin 99.6 6.3E-16 2.2E-20 95.1 7.7 72 75-146 14-93 (95)
150 2kjr_A CG11242; UBL, ubiquitin 99.6 9.4E-16 3.2E-20 94.3 7.9 70 1-70 16-93 (95)
151 1v86_A DNA segment, CHR 7, way 99.6 2.7E-16 9.3E-21 97.0 5.5 72 76-149 17-88 (95)
152 1wz0_A Ubiquitin-like protein 99.6 1.1E-15 3.6E-20 95.4 7.8 79 75-153 23-101 (104)
153 2dzj_A Synaptic glycoprotein S 99.6 7.2E-16 2.4E-20 93.7 6.7 70 76-145 10-85 (88)
154 2dzj_A Synaptic glycoprotein S 99.6 3.9E-16 1.3E-20 94.8 5.5 69 1-69 11-85 (88)
155 2dzm_A FAS-associated factor 1 99.6 6.5E-16 2.2E-20 95.7 6.3 75 76-150 8-83 (100)
156 2eke_C Ubiquitin-like protein 99.6 2.4E-15 8.2E-20 93.9 8.4 78 74-152 29-106 (106)
157 3ai5_A Yeast enhanced green fl 99.6 2.1E-15 7.3E-20 110.3 8.5 73 1-73 234-306 (307)
158 2kj6_A Tubulin folding cofacto 99.6 2.8E-15 9.6E-20 92.5 7.6 71 77-147 15-94 (97)
159 1oqy_A HHR23A, UV excision rep 99.6 2E-15 6.8E-20 113.3 8.2 79 75-153 6-88 (368)
160 4b6w_A Tubulin-specific chaper 99.6 2.3E-15 7.8E-20 91.0 6.3 72 2-73 4-84 (86)
161 2k8h_A Small ubiquitin protein 99.6 2.8E-15 9.6E-20 94.3 6.8 79 74-152 24-102 (110)
162 2kj6_A Tubulin folding cofacto 99.6 4.2E-15 1.4E-19 91.7 7.0 71 2-72 16-95 (97)
163 1wm3_A Ubiquitin-like protein 99.6 1.2E-14 4.3E-19 85.0 8.7 70 77-146 2-71 (72)
164 1t0y_A Tubulin folding cofacto 99.6 1.1E-14 3.8E-19 93.7 8.2 73 1-73 7-87 (122)
165 2io1_B Small ubiquitin-related 99.6 1.5E-14 5.1E-19 88.8 8.3 76 1-76 8-83 (94)
166 1v6e_A Cytoskeleton-associated 99.6 1.2E-14 4.1E-19 89.6 7.9 71 77-147 8-86 (95)
167 1v6e_A Cytoskeleton-associated 99.6 1.1E-14 3.6E-19 89.8 7.1 72 1-72 8-87 (95)
168 1wf9_A NPL4 family protein; be 99.6 4.2E-15 1.4E-19 93.6 5.1 72 1-73 8-95 (107)
169 1oqy_A HHR23A, UV excision rep 99.5 7.2E-15 2.4E-19 110.3 6.9 74 1-74 8-85 (368)
170 2xzm_9 RPS31E; ribosome, trans 99.5 4E-16 1.4E-20 106.5 0.0 71 1-76 1-71 (189)
171 1wf9_A NPL4 family protein; be 99.5 8.2E-15 2.8E-19 92.2 6.0 72 76-148 7-94 (107)
172 1t0y_A Tubulin folding cofacto 99.5 3.1E-14 1.1E-18 91.6 8.4 72 76-147 6-85 (122)
173 3a4r_A Nfatc2-interacting prot 99.5 7.4E-14 2.5E-18 83.1 9.0 72 75-146 6-78 (79)
174 2io0_B Small ubiquitin-related 99.5 7E-14 2.4E-18 85.2 8.9 76 1-76 6-81 (91)
175 1wm3_A Ubiquitin-like protein 99.5 8E-14 2.7E-18 81.5 8.3 70 1-70 2-71 (72)
176 2kzr_A Ubiquitin thioesterase 99.5 4.2E-14 1.4E-18 85.6 6.5 70 77-147 1-76 (86)
177 2d07_B Ubiquitin-like protein 99.5 2.2E-13 7.7E-18 83.4 8.6 75 1-75 18-92 (93)
178 2kzr_A Ubiquitin thioesterase 99.5 4.3E-14 1.5E-18 85.5 5.2 71 1-72 1-77 (86)
179 3shq_A UBLCP1; phosphatase, hy 99.5 9.6E-14 3.3E-18 102.7 7.0 72 76-148 5-79 (320)
180 3shq_A UBLCP1; phosphatase, hy 99.4 7.5E-14 2.6E-18 103.3 5.5 74 1-75 6-82 (320)
181 3kyd_D Small ubiquitin-related 99.4 9E-13 3.1E-17 83.0 9.4 77 75-151 39-115 (115)
182 3a4r_A Nfatc2-interacting prot 99.4 5.8E-13 2E-17 79.2 8.1 70 1-70 8-78 (79)
183 1wz0_A Ubiquitin-like protein 99.4 3.5E-13 1.2E-17 84.0 7.2 75 1-75 25-99 (104)
184 2k8h_A Small ubiquitin protein 99.4 3.1E-13 1E-17 85.0 6.2 77 1-77 27-103 (110)
185 2eke_C Ubiquitin-like protein 99.4 1E-12 3.5E-17 82.0 8.0 74 1-75 32-105 (106)
186 1wjn_A Tubulin-folding protein 99.4 2.9E-12 9.8E-17 79.1 8.5 74 77-150 10-94 (97)
187 3tix_A Ubiquitin-like protein 99.4 1.8E-12 6.1E-17 87.8 7.5 79 74-153 55-133 (207)
188 3pge_A SUMO-modified prolifera 99.4 5E-12 1.7E-16 87.1 9.3 79 74-153 27-105 (200)
189 1wjn_A Tubulin-folding protein 99.3 6.7E-12 2.3E-16 77.5 8.2 71 2-72 11-92 (97)
190 3v7o_A Minor nucleoprotein VP3 99.2 7E-13 2.4E-17 90.9 0.2 83 70-153 15-97 (227)
191 3kyd_D Small ubiquitin-related 99.2 7.9E-11 2.7E-15 74.2 8.9 73 1-73 41-113 (115)
192 3goe_A DNA repair protein RAD6 99.2 3.3E-10 1.1E-14 65.4 9.2 71 77-147 10-81 (82)
193 3goe_A DNA repair protein RAD6 99.1 6.6E-10 2.3E-14 64.1 8.7 70 2-71 11-81 (82)
194 3pge_A SUMO-modified prolifera 99.1 1.9E-09 6.6E-14 74.2 10.7 74 1-75 30-103 (200)
195 2jxx_A Nfatc2-interacting prot 99.1 1.2E-09 4E-14 66.9 8.4 72 75-146 24-96 (97)
196 3tix_A Ubiquitin-like protein 99.0 8.7E-10 3E-14 74.8 7.3 75 1-76 58-132 (207)
197 2pjh_A Protein NPL4, nuclear p 99.0 4.5E-10 1.5E-14 66.7 4.6 70 76-146 4-78 (80)
198 3uf8_A Ubiquitin-like protein 99.0 1.6E-09 5.5E-14 75.6 8.1 83 69-152 14-96 (209)
199 3ivf_A Talin-1; FERM domain, c 99.0 8.7E-08 3E-12 72.3 17.0 143 2-148 5-167 (371)
200 2l76_A Nfatc2-interacting prot 98.9 7.5E-09 2.6E-13 62.4 8.4 71 76-147 21-91 (95)
201 3ix6_A TS, tsase, thymidylate 98.9 1.5E-10 5E-15 86.2 0.0 81 71-152 16-96 (360)
202 2pjh_A Protein NPL4, nuclear p 98.8 1.7E-09 5.8E-14 64.2 2.9 69 1-70 5-78 (80)
203 2jxx_A Nfatc2-interacting prot 98.8 2.7E-08 9.1E-13 60.9 8.2 70 1-70 26-96 (97)
204 3v7o_A Minor nucleoprotein VP3 98.8 4.4E-10 1.5E-14 77.2 -0.2 76 1-77 22-97 (227)
205 4da1_A Protein phosphatase 1K, 98.7 1.7E-09 5.8E-14 82.2 0.0 78 75-153 29-106 (389)
206 2l76_A Nfatc2-interacting prot 98.7 8.5E-08 2.9E-12 57.8 7.3 72 1-73 22-93 (95)
207 2al3_A TUG long isoform; TUG U 98.7 1.8E-07 6E-12 55.9 7.8 76 74-149 7-82 (90)
208 3ix6_A TS, tsase, thymidylate 98.5 1.8E-08 6.1E-13 75.0 -0.2 76 1-77 22-97 (360)
209 3uf8_A Ubiquitin-like protein 98.4 2E-06 6.9E-11 59.9 9.8 74 1-75 22-95 (209)
210 4efo_A Serine/threonine-protei 98.4 1.4E-06 4.7E-11 52.8 7.6 64 85-148 22-88 (94)
211 4efo_A Serine/threonine-protei 98.4 2.3E-06 7.8E-11 51.8 8.2 59 3-61 15-76 (94)
212 2al3_A TUG long isoform; TUG U 98.3 3.7E-06 1.3E-10 50.2 6.8 73 1-73 10-82 (90)
213 2kc2_A Talin-1, F1; FERM, adhe 98.2 1.7E-06 5.8E-11 55.3 5.2 70 78-147 13-121 (128)
214 2kc2_A Talin-1, F1; FERM, adhe 98.2 2.7E-06 9.4E-11 54.3 6.1 70 2-71 13-121 (128)
215 2bps_A YUKD protein; ubiquitin 98.2 5.7E-06 2E-10 48.7 6.4 69 1-69 5-80 (81)
216 4da1_A Protein phosphatase 1K, 98.2 2.6E-07 9E-12 70.1 0.0 74 2-76 32-105 (389)
217 2bps_A YUKD protein; ubiquitin 98.1 6.9E-06 2.4E-10 48.3 5.9 62 84-145 14-80 (81)
218 3qx1_A FAS-associated factor 1 98.1 2.4E-05 8.1E-10 46.5 7.6 69 77-146 8-81 (84)
219 3qx1_A FAS-associated factor 1 97.8 0.00013 4.5E-09 43.2 7.9 68 2-70 9-81 (84)
220 2dzk_A UBX domain-containing p 97.7 0.00023 7.7E-09 44.4 8.1 72 76-147 13-89 (109)
221 1wj4_A KIAA0794 protein; UBX d 97.7 0.00014 4.8E-09 46.4 7.2 71 75-146 42-117 (124)
222 2dzk_A UBX domain-containing p 97.5 0.00078 2.7E-08 41.9 8.1 71 2-72 15-90 (109)
223 1wj4_A KIAA0794 protein; UBX d 97.5 0.00088 3E-08 42.6 7.9 68 2-70 45-117 (124)
224 2cr5_A Reproduction 8; UBX dom 97.3 0.0013 4.3E-08 40.9 7.1 70 76-146 23-96 (109)
225 2ylm_A Ubiquitin carboxyl-term 97.2 0.002 6.9E-08 50.8 8.7 135 13-147 38-216 (530)
226 2daj_A KIAA0977 protein, COBL- 97.2 0.0016 5.4E-08 38.1 5.9 64 76-139 10-76 (91)
227 1ryj_A Unknown; beta/alpha pro 97.1 0.0088 3E-07 33.9 9.0 67 76-152 4-70 (70)
228 2ylm_A Ubiquitin carboxyl-term 97.1 0.0062 2.1E-07 48.0 10.4 119 12-130 353-501 (530)
229 1s3s_G P47 protein; AAA ATPase 97.0 0.0026 8.9E-08 40.6 6.8 69 75-143 51-123 (127)
230 3ivf_A Talin-1; FERM domain, c 96.9 0.01 3.5E-07 44.5 9.8 61 86-146 12-82 (371)
231 2l32_A Small archaeal modifier 96.8 0.0058 2E-07 35.2 6.2 66 77-153 1-66 (74)
232 2cr5_A Reproduction 8; UBX dom 96.8 0.0065 2.2E-07 37.6 6.8 69 2-71 25-97 (109)
233 1s3s_G P47 protein; AAA ATPase 96.6 0.007 2.4E-07 38.6 6.0 66 2-67 54-123 (127)
234 2daj_A KIAA0977 protein, COBL- 96.5 0.0048 1.6E-07 36.1 4.5 62 2-63 12-76 (91)
235 4e71_A Plexin-B2, MM1; transme 96.5 0.025 8.7E-07 35.0 7.9 62 10-71 23-109 (111)
236 4a3p_A Ubiquitin carboxyl-term 96.4 0.011 3.8E-07 41.1 6.8 65 88-152 141-212 (217)
237 3jyu_A Ubiquitin carboxyl-term 96.3 0.024 8.4E-07 39.8 8.3 65 88-152 153-224 (231)
238 1vjk_A Molybdopterin convertin 96.2 0.069 2.3E-06 32.2 9.0 73 75-152 8-98 (98)
239 2juo_A GA-binding protein alph 96.2 0.036 1.2E-06 32.3 6.9 61 89-149 5-65 (89)
240 2r2o_A Plexin-B1; effector dom 96.2 0.036 1.2E-06 35.6 7.6 63 87-149 41-129 (138)
241 1oey_A P67-PHOX, neutrophil cy 96.1 0.022 7.5E-07 33.4 5.7 45 1-47 6-50 (83)
242 1tyg_B YJBS; alpha beta barrel 95.9 0.045 1.5E-06 32.4 6.6 67 76-152 20-87 (87)
243 4e71_A Plexin-B2, MM1; transme 95.8 0.073 2.5E-06 32.9 7.7 62 86-147 23-109 (111)
244 2k5p_A THis protein, thiamine- 95.8 0.019 6.7E-07 33.2 4.9 64 85-153 6-70 (78)
245 2l32_A Small archaeal modifier 95.8 0.044 1.5E-06 31.4 6.3 62 1-72 1-62 (74)
246 3rpf_C Molybdopterin convertin 95.8 0.057 1.9E-06 30.7 6.8 57 91-152 16-74 (74)
247 2r2o_A Plexin-B1; effector dom 95.7 0.073 2.5E-06 34.1 7.5 63 11-73 41-129 (138)
248 3jyu_A Ubiquitin carboxyl-term 95.5 0.067 2.3E-06 37.5 7.5 61 13-73 154-221 (231)
249 1oey_A P67-PHOX, neutrophil cy 95.5 0.057 1.9E-06 31.6 5.9 46 77-124 6-51 (83)
250 2kl0_A Putative thiamin biosyn 95.4 0.04 1.4E-06 31.5 5.0 60 85-152 6-65 (73)
251 3po0_A Small archaeal modifier 95.4 0.12 4.3E-06 30.3 7.5 61 87-152 18-89 (89)
252 4a3p_A Ubiquitin carboxyl-term 95.4 0.058 2E-06 37.5 6.8 61 13-73 142-209 (217)
253 3h6n_A Plexin-D1; structural g 95.3 0.26 8.9E-06 31.1 8.9 64 85-148 15-104 (127)
254 1fm0_D Molybdopterin convertin 95.3 0.067 2.3E-06 30.8 5.9 59 88-152 18-81 (81)
255 2q5w_D Molybdopterin convertin 95.2 0.062 2.1E-06 30.7 5.6 59 88-152 17-77 (77)
256 2cu3_A Unknown function protei 94.9 0.11 3.7E-06 28.6 5.8 60 85-152 5-64 (64)
257 3kuz_A Plexin-C1; structural g 94.9 0.4 1.4E-05 30.2 9.2 61 87-147 39-125 (126)
258 1f0z_A THis protein; ubiquitin 94.8 0.065 2.2E-06 29.8 4.7 61 85-152 6-66 (66)
259 2juo_A GA-binding protein alph 94.7 0.14 4.7E-06 29.8 5.9 59 13-71 5-63 (89)
260 1ef1_A Moesin; membrane, FERM 94.5 0.33 1.1E-05 34.9 9.1 71 77-148 2-78 (294)
261 1vd2_A Protein kinase C, IOTA 94.4 0.3 1E-05 28.9 7.1 48 77-125 7-55 (89)
262 3h6n_A Plexin-D1; structural g 94.4 0.42 1.4E-05 30.1 8.0 64 9-72 15-104 (127)
263 1ryj_A Unknown; beta/alpha pro 94.3 0.36 1.2E-05 27.0 7.9 62 1-72 5-66 (70)
264 2kvr_A Ubiquitin carboxyl-term 94.2 0.069 2.4E-06 34.1 4.3 33 13-45 58-90 (130)
265 4e74_A Plexin-A4; RBD, structu 93.9 0.35 1.2E-05 30.1 7.0 64 86-149 26-115 (117)
266 2kvr_A Ubiquitin carboxyl-term 93.9 0.067 2.3E-06 34.1 3.8 32 89-120 58-89 (130)
267 4e74_A Plexin-A4; RBD, structu 93.9 0.32 1.1E-05 30.3 6.7 62 11-72 27-114 (117)
268 1h4r_A Merlin; FERM, neurofibr 93.8 0.53 1.8E-05 34.2 9.1 74 74-148 20-98 (314)
269 1rws_A Hypothetical protein PF 93.6 0.027 9.3E-07 32.4 1.4 54 90-152 24-77 (77)
270 3rpf_C Molybdopterin convertin 93.4 0.52 1.8E-05 26.6 6.8 68 1-73 1-71 (74)
271 3dwg_C 9.5 kDa culture filtrat 93.1 0.75 2.6E-05 27.1 8.1 61 90-152 20-93 (93)
272 2i1j_A Moesin; FERM, coiled-co 93.0 0.53 1.8E-05 37.4 8.4 73 75-148 3-81 (575)
273 2g1e_A Hypothetical protein TA 92.9 0.52 1.8E-05 27.5 6.5 61 91-152 19-90 (90)
274 3kuz_A Plexin-C1; structural g 92.2 1.3 4.6E-05 27.8 8.5 60 11-70 39-124 (126)
275 1vd2_A Protein kinase C, IOTA 91.7 1.2 4E-05 26.4 6.8 44 2-46 8-52 (89)
276 3qij_A Protein 4.1; cytoskelet 91.7 0.71 2.4E-05 33.4 7.1 73 75-147 16-94 (296)
277 1j0g_A Hypothetical protein 18 91.4 1.2 4.2E-05 25.6 6.6 64 90-153 27-91 (92)
278 1y8x_B Ubiquitin-activating en 90.9 0.33 1.1E-05 29.3 3.9 59 88-146 6-82 (98)
279 1wgk_A Riken cDNA 2900073H19 p 90.8 1.9 6.4E-05 26.7 7.7 64 88-152 31-108 (114)
280 1vjk_A Molybdopterin convertin 90.7 1.7 5.7E-05 25.9 8.1 67 1-72 10-94 (98)
281 1wgy_A RAP guanine nucleotide 90.5 1.9 6.4E-05 26.2 7.9 71 78-148 11-86 (104)
282 1wgr_A Growth factor receptor- 90.5 0.82 2.8E-05 27.7 5.4 60 75-134 8-74 (100)
283 3hm6_X Plexin-B1; structural g 89.5 2.1 7.2E-05 34.2 8.3 63 11-73 274-362 (644)
284 3u52_E Phenol hydroxylase comp 89.4 2 7E-05 26.6 6.6 62 87-148 38-109 (119)
285 1wgr_A Growth factor receptor- 89.3 1.1 3.9E-05 27.0 5.4 56 3-58 12-74 (100)
286 1wgy_A RAP guanine nucleotide 89.2 1.8 6E-05 26.4 6.2 68 5-72 14-86 (104)
287 1ef1_A Moesin; membrane, FERM 88.9 3.2 0.00011 29.7 8.6 68 1-69 2-75 (294)
288 2kmc_A Fermitin family homolog 88.7 2.6 8.9E-05 25.3 8.7 71 2-72 21-99 (102)
289 1h4r_A Merlin; FERM, neurofibr 88.6 3.6 0.00012 29.8 8.8 66 1-67 23-93 (314)
290 3hm6_X Plexin-B1; structural g 88.0 2.5 8.7E-05 33.8 7.9 63 87-149 274-362 (644)
291 1tyg_B YJBS; alpha beta barrel 87.8 1.6 5.6E-05 25.6 5.3 57 9-72 26-83 (87)
292 3ig3_A Plxna3 protein; plexin 87.6 3.8 0.00013 32.7 8.6 72 2-73 235-335 (627)
293 2qjl_A URM1, ubiquitin-related 87.5 3.1 0.0001 24.8 8.7 65 87-152 20-99 (99)
294 1y8x_B Ubiquitin-activating en 87.4 3.1 0.0001 25.0 6.4 59 12-70 6-82 (98)
295 2kmc_A Fermitin family homolog 87.0 3.4 0.00012 24.8 7.9 70 77-146 20-97 (102)
296 3qij_A Protein 4.1; cytoskelet 86.9 3.1 0.0001 30.0 7.4 60 1-60 18-83 (296)
297 2i1j_A Moesin; FERM, coiled-co 86.8 4.8 0.00017 32.0 9.0 68 1-69 5-78 (575)
298 2k9x_A Tburm1, uncharacterized 86.7 0.85 2.9E-05 28.1 3.8 63 87-152 21-102 (110)
299 1q1o_A Cell division control p 86.4 1.3 4.4E-05 26.7 4.3 36 2-37 7-49 (98)
300 2hj1_A Hypothetical protein; s 86.0 1.8 6.2E-05 25.9 4.9 58 87-149 26-86 (97)
301 1ip9_A BEM1 protein; ubiquitin 85.8 3.6 0.00012 23.9 6.3 35 3-37 13-48 (85)
302 3ig3_A Plxna3 protein; plexin 85.4 3.3 0.00011 33.1 7.3 64 86-149 246-335 (627)
303 2inc_C TOUB protein; DIIRON, 4 85.4 3.8 0.00013 23.7 7.6 60 89-148 15-82 (83)
304 3onh_A Ubiquitin-activating en 85.0 3.8 0.00013 25.8 6.1 50 96-146 19-77 (127)
305 2kmm_A Guanosine-3',5'-BIS(dip 84.6 3.5 0.00012 22.7 5.9 61 1-70 1-61 (73)
306 4eut_A Serine/threonine-protei 84.6 3.6 0.00012 30.5 7.1 50 11-60 322-373 (396)
307 3ge3_C Toluene-4-monooxygenase 83.1 5 0.00017 23.2 6.2 59 89-147 17-82 (84)
308 2kmm_A Guanosine-3',5'-BIS(dip 83.0 4.2 0.00014 22.3 5.8 63 77-148 1-63 (73)
309 2l52_A Methanosarcina acetivor 82.4 3.3 0.00011 24.6 5.0 56 96-152 27-99 (99)
310 4eut_A Serine/threonine-protei 82.3 5.1 0.00017 29.7 7.1 52 85-136 320-373 (396)
311 1v8c_A MOAD related protein; r 82.0 5.2 0.00018 26.4 6.2 62 90-153 17-88 (168)
312 3dwg_C 9.5 kDa culture filtrat 81.2 6.1 0.00021 23.0 7.0 71 1-73 1-90 (93)
313 2dhz_A RAP guanine nucleotide 81.0 5.6 0.00019 24.8 5.7 70 78-147 11-91 (120)
314 1fm0_D Molybdopterin convertin 80.8 5.2 0.00018 22.5 5.3 56 11-72 17-77 (81)
315 3onh_A Ubiquitin-activating en 80.3 6.6 0.00023 24.7 5.9 51 20-71 19-78 (127)
316 2q5w_D Molybdopterin convertin 79.8 4.1 0.00014 22.7 4.6 56 11-72 16-73 (77)
317 3po0_A Small archaeal modifier 79.6 6.8 0.00023 22.5 7.3 58 11-73 18-86 (89)
318 2dhz_A RAP guanine nucleotide 79.0 5.1 0.00017 25.0 5.0 66 7-72 16-92 (120)
319 3qa8_A MGC80376 protein; kinas 78.5 3.9 0.00013 33.2 5.6 50 85-134 320-370 (676)
320 3qa8_A MGC80376 protein; kinas 78.2 2.1 7.1E-05 34.8 3.9 50 10-59 321-371 (676)
321 2lgx_A Fermitin family homolog 78.1 3.2 0.00011 25.3 3.8 68 77-145 27-99 (112)
322 1rws_A Hypothetical protein PF 78.0 1.9 6.4E-05 24.5 2.7 50 14-72 24-73 (77)
323 2lgx_A Fermitin family homolog 75.7 2.3 8E-05 25.9 2.7 62 11-72 36-102 (112)
324 1q1o_A Cell division control p 75.7 4.3 0.00015 24.4 3.9 38 86-123 22-64 (98)
325 4gmv_A RAS-associated and plec 75.1 12 0.00041 26.9 6.8 56 3-58 34-96 (281)
326 2c7h_A RBBP6, retinoblastoma-b 74.7 10 0.00035 22.1 6.5 32 89-120 20-52 (86)
327 1ip9_A BEM1 protein; ubiquitin 74.1 11 0.00036 22.0 5.8 47 75-124 11-58 (85)
328 3pvl_A Myosin VIIA isoform 1; 72.9 11 0.00038 30.5 6.8 47 75-121 262-309 (655)
329 3au4_A Myosin-X; protein-prote 72.7 11 0.00037 29.6 6.7 47 75-121 215-263 (555)
330 3h9d_A ATG8, microtubule-assoc 72.3 8.5 0.00029 23.9 4.8 46 90-135 51-97 (119)
331 3m95_A Autophagy related prote 69.6 8.7 0.0003 24.1 4.4 46 90-135 56-102 (125)
332 2v1y_A Phosphatidylinositol-4, 68.9 14 0.00048 22.5 5.1 33 3-35 22-54 (108)
333 3r8s_T 50S ribosomal protein L 68.4 16 0.00054 21.6 5.3 39 86-124 27-66 (93)
334 3hk0_A Growth factor receptor- 68.2 13 0.00045 26.3 5.6 56 3-58 11-73 (256)
335 2eel_A Cell death activator CI 67.9 12 0.00043 22.0 4.6 37 97-133 28-66 (91)
336 1pqs_A Cell division control p 67.8 5.5 0.00019 22.7 3.0 36 88-123 3-43 (77)
337 3hvz_A Uncharacterized protein 67.6 14 0.00049 20.9 4.8 61 78-147 7-67 (78)
338 4gmv_A RAS-associated and plec 66.8 16 0.00053 26.3 5.9 37 77-113 32-68 (281)
339 3au4_A Myosin-X; protein-prote 66.5 12 0.00041 29.4 5.7 38 1-38 217-254 (555)
340 2r2q_A Gamma-aminobutyric acid 65.8 12 0.0004 22.8 4.4 46 90-135 47-93 (110)
341 1pqs_A Cell division control p 64.5 7.5 0.00026 22.2 3.1 26 12-37 3-28 (77)
342 3hk0_A Growth factor receptor- 64.4 20 0.00068 25.4 6.0 36 78-113 10-45 (256)
343 2zjd_A Microtubule-associated 63.9 22 0.00074 22.4 5.5 47 89-135 55-103 (130)
344 2v1y_A Phosphatidylinositol-4, 62.3 14 0.00047 22.5 4.2 62 77-138 20-95 (108)
345 3tca_A Amyloid beta A4 precurs 62.1 31 0.001 24.2 6.8 39 3-41 37-75 (291)
346 3tve_T 50S ribosomal protein L 61.9 19 0.00066 21.2 4.7 38 87-124 22-60 (92)
347 1eo6_A GATE-16, golgi-associat 61.8 14 0.00049 22.7 4.3 46 90-135 48-94 (117)
348 3pvl_A Myosin VIIA isoform 1; 60.8 19 0.00063 29.2 5.9 45 1-45 264-309 (655)
349 3rui_B Autophagy-related prote 59.7 20 0.00067 22.2 4.7 46 90-135 50-96 (118)
350 3u52_E Phenol hydroxylase comp 59.5 29 0.00098 21.5 6.7 60 11-70 38-107 (119)
351 3tca_A Amyloid beta A4 precurs 59.3 24 0.00084 24.7 5.9 40 77-116 35-74 (291)
352 3h9d_A ATG8, microtubule-assoc 58.8 24 0.00081 21.9 4.9 44 15-58 52-96 (119)
353 1f2r_I Inhibitor of caspase-ac 58.5 27 0.00091 21.0 4.9 46 97-144 37-86 (100)
354 2zjd_A Microtubule-associated 56.8 34 0.0012 21.5 6.1 46 14-59 56-103 (130)
355 3ge3_C Toluene-4-monooxygenase 55.9 27 0.00093 20.1 7.1 69 2-70 5-81 (84)
356 2r2q_A Gamma-aminobutyric acid 55.5 18 0.00061 22.0 3.9 57 2-58 29-92 (110)
357 2zjr_Q 50S ribosomal protein L 54.1 24 0.00081 20.9 4.2 36 88-123 24-60 (95)
358 3r8s_T 50S ribosomal protein L 53.9 32 0.0011 20.3 4.8 38 11-48 28-66 (93)
359 1vq8_S 50S ribosomal protein L 53.5 25 0.00084 20.4 4.1 36 86-121 22-57 (85)
360 4gdk_A Ubiquitin-like protein 53.3 23 0.00079 20.7 4.0 47 89-135 22-70 (91)
361 3f5r_A FACT complex subunit PO 50.8 19 0.00066 24.3 3.8 49 75-123 83-131 (191)
362 3j21_T 50S ribosomal protein L 49.8 34 0.0012 19.8 4.3 36 86-121 23-58 (86)
363 1j0g_A Hypothetical protein 18 48.6 37 0.0013 19.5 5.8 62 13-74 26-88 (92)
364 3m95_A Autophagy related prote 48.4 28 0.00094 21.8 4.0 44 15-58 57-101 (125)
365 1vq8_S 50S ribosomal protein L 48.4 31 0.0011 19.9 4.0 34 10-43 22-55 (85)
366 2zjr_Q 50S ribosomal protein L 47.4 36 0.0012 20.1 4.2 35 13-47 25-60 (95)
367 1wmh_B Partitioning defective- 46.7 41 0.0014 19.5 5.3 45 79-123 7-54 (86)
368 1wxm_A A-RAF proto-oncogene se 46.2 42 0.0014 19.5 5.7 43 78-120 9-51 (86)
369 1wfy_A Regulator of G-protein 46.1 34 0.0012 20.6 4.0 50 84-133 25-76 (104)
370 4gdk_A Ubiquitin-like protein 45.3 44 0.0015 19.5 5.5 32 14-45 23-54 (91)
371 1zps_A PRA-CH, phosphoribosyl- 45.1 44 0.0015 21.3 4.5 74 77-153 24-101 (138)
372 1c1y_B Proto-onkogene serine/t 44.9 42 0.0014 19.1 5.8 42 79-120 4-45 (77)
373 3kh0_A Ralgds, ralgef, RAL gua 44.8 58 0.002 20.7 7.6 74 1-74 28-109 (140)
374 4eku_A Protein-tyrosine kinase 44.7 35 0.0012 25.7 4.8 52 84-135 35-97 (392)
375 2al6_A Focal adhesion kinase 1 43.6 26 0.0009 26.0 4.0 55 81-135 12-77 (375)
376 3lxf_A Ferredoxin; iron, iron- 43.5 35 0.0012 20.2 3.9 28 2-29 2-29 (104)
377 2cu1_A Mitogen-activated prote 42.6 53 0.0018 19.7 5.3 41 3-46 9-50 (103)
378 2nvu_B Maltose binding protein 42.2 60 0.0021 26.7 6.2 58 89-146 714-789 (805)
379 2h3j_A Hypothetical protein PA 41.1 16 0.00054 20.0 1.9 21 130-150 25-45 (75)
380 4dxe_H ACP, acyl carrier prote 39.3 33 0.0011 20.2 3.3 27 89-115 18-44 (101)
381 2l05_A Serine/threonine-protei 38.2 62 0.0021 19.1 5.7 43 78-120 19-61 (95)
382 2eki_A DRG 1, developmentally- 38.0 34 0.0012 20.2 3.1 59 90-149 28-88 (93)
383 4eku_A Protein-tyrosine kinase 37.9 72 0.0025 23.9 5.6 56 3-58 24-96 (392)
384 2bt6_A Adrenodoxin 1; rutheniu 37.5 52 0.0018 19.4 4.0 27 2-28 8-34 (108)
385 3chb_D Cholera toxin; toxin/re 37.2 49 0.0017 19.0 3.5 31 3-33 39-69 (104)
386 3kh0_A Ralgds, ralgef, RAL gua 37.1 79 0.0027 20.0 7.9 75 78-152 29-111 (140)
387 2inc_C TOUB protein; DIIRON, 4 36.3 62 0.0021 18.6 8.6 70 2-71 3-81 (83)
388 2c5l_C Phosphoinositide-specif 36.2 76 0.0026 19.6 5.8 34 87-120 20-61 (117)
389 2al6_A Focal adhesion kinase 1 35.9 37 0.0013 25.2 3.7 55 4-58 11-76 (375)
390 4dxa_B KREV interaction trappe 35.9 47 0.0016 23.9 4.3 34 77-114 6-41 (322)
391 3rui_B Autophagy-related prote 35.2 78 0.0027 19.4 5.6 44 15-58 51-95 (118)
392 3e19_A FEOA; transcriptional r 35.1 21 0.00071 19.8 1.8 18 131-148 30-47 (77)
393 1rm6_C 4-hydroxybenzoyl-COA re 34.9 54 0.0019 21.2 4.0 23 8-30 9-31 (161)
394 2k4y_A FEOA-like protein; GFT 34.8 20 0.00069 20.4 1.7 21 130-150 29-49 (86)
395 1eo6_A GATE-16, golgi-associat 34.7 79 0.0027 19.3 5.3 58 15-72 49-110 (117)
396 2lte_A Specialized acyl carrie 40.4 8.5 0.00029 23.0 0.0 72 22-109 27-98 (103)
397 1hmj_A RPB5, protein (subunit 33.4 46 0.0016 18.9 3.0 42 103-149 20-61 (78)
398 2y5c_A Adrenodoxin-like protei 33.3 67 0.0023 19.0 4.0 27 2-28 7-33 (109)
399 1eik_A RNA polymerase subunit 32.5 49 0.0017 18.8 3.0 42 103-149 22-63 (77)
400 1af8_A Actinorhodin polyketide 32.3 26 0.00088 19.6 1.9 78 20-109 4-81 (86)
401 2wlb_A ETP1-FD, electron trans 32.2 71 0.0024 18.5 4.0 28 2-29 5-32 (103)
402 3cjl_A Domain of unknown funct 32.1 73 0.0025 18.5 3.8 37 2-38 7-45 (88)
403 2k0q_A Putative uncharacterize 31.9 25 0.00084 19.6 1.6 15 132-146 7-21 (74)
404 2bkf_A Zinc-finger protein NBR 31.8 78 0.0027 18.4 6.3 42 78-122 8-51 (87)
405 2zkr_s 60S ribosomal protein L 31.8 68 0.0023 20.9 4.0 35 86-120 93-127 (156)
406 1ibx_B Chimera of IGG binding 31.2 30 0.001 22.2 2.1 35 97-131 82-120 (145)
407 2j58_A WZA, outer membrane lip 30.9 1.6E+02 0.0055 21.7 9.0 80 67-146 141-230 (359)
408 1ef5_A RGL; RAS-binding domain 30.8 89 0.003 18.7 5.2 73 79-151 23-103 (103)
409 1wz3_A Autophagy 12B, ATG12B, 30.5 52 0.0018 19.4 3.1 45 89-135 30-75 (96)
410 1n62_A Carbon monoxide dehydro 28.9 66 0.0023 21.0 3.7 27 2-29 5-31 (166)
411 2lu7_A Obscurin-like protein 1 28.6 72 0.0024 17.6 3.4 18 113-130 23-40 (84)
412 3u5e_X 60S ribosomal protein L 28.3 85 0.0029 20.1 3.9 34 87-120 80-113 (142)
413 2lx9_A Ferrous iron transport 28.0 42 0.0014 19.0 2.3 21 130-150 24-44 (83)
414 1t3q_A Quinoline 2-oxidoreduct 28.0 67 0.0023 20.9 3.6 28 1-29 10-37 (168)
415 2ktr_A Sequestosome-1; autopha 27.9 1.1E+02 0.0037 18.8 5.2 27 97-123 57-84 (117)
416 4a17_R RPL23A, 60S ribosomal p 27.8 95 0.0032 20.0 4.1 35 86-120 87-121 (150)
417 2j0j_A Focal adhesion kinase 1 27.8 1.7E+02 0.0056 23.4 6.5 47 88-134 23-76 (656)
418 1tt5_B Ubiquitin-activating en 27.6 30 0.001 26.4 2.0 57 90-146 344-418 (434)
419 1jq4_A Methane monooxygenase c 27.1 94 0.0032 17.8 3.9 28 2-29 6-33 (98)
420 3hrd_D Nicotinate dehydrogenas 27.1 74 0.0025 20.7 3.6 26 2-28 5-30 (160)
421 4dxa_B KREV interaction trappe 26.9 65 0.0022 23.2 3.7 34 1-38 6-41 (322)
422 1ltr_D ETB-R2, heat-labIle ent 26.6 62 0.0021 18.9 2.8 31 3-33 38-68 (113)
423 2ns5_A Partitioning-defective 26.3 99 0.0034 17.8 6.9 58 1-59 3-70 (85)
424 2k5l_A FEOA; structure, NESG, 26.1 42 0.0014 18.8 2.1 21 130-150 26-46 (81)
425 3ny5_A Serine/threonine-protei 25.8 1.1E+02 0.0037 18.1 5.8 45 78-122 15-59 (96)
426 1uwm_A Ferredoxin VI, FDVI; el 25.7 1E+02 0.0036 17.9 4.1 26 2-27 2-27 (106)
427 3hui_A Ferredoxin; cytochrome 25.7 1.2E+02 0.0041 18.6 4.4 26 2-27 23-48 (126)
428 1vku_A Acyl carrier protein; T 25.6 10 0.00036 22.5 -0.7 73 22-110 18-90 (100)
429 1xlq_A Putidaredoxin, PDX; [2F 25.6 1.1E+02 0.0036 17.9 4.0 28 2-29 2-29 (106)
430 3mb2_B 4-oxalocrotonate tautom 25.6 84 0.0029 17.5 3.1 30 99-128 22-51 (72)
431 4a6q_A Histone deacetylase com 25.1 74 0.0025 20.4 3.2 25 127-151 117-141 (143)
432 2zkr_s 60S ribosomal protein L 25.1 1E+02 0.0035 20.0 3.9 33 11-43 94-126 (156)
433 1ffv_A CUTS, iron-sulfur prote 25.0 87 0.003 20.4 3.7 27 2-29 5-31 (163)
434 4a17_R RPL23A, 60S ribosomal p 24.9 1.1E+02 0.0038 19.7 4.0 34 10-43 87-120 (150)
435 3o27_A Putative uncharacterize 24.6 32 0.0011 18.9 1.3 7 88-94 24-30 (68)
436 3w1s_C Ubiquitin-like protein 24.0 1.1E+02 0.0039 17.7 5.6 56 89-146 25-83 (91)
437 1d4b_A CIDE B, human cell deat 23.7 62 0.0021 20.1 2.6 34 97-131 54-89 (122)
438 1rrb_A RAF-1 RBD, RAF proto-on 23.7 1.3E+02 0.0044 18.2 5.7 43 78-120 20-62 (107)
439 3iz5_X 60S ribosomal protein L 23.4 93 0.0032 20.1 3.5 36 86-121 89-124 (152)
440 3knb_B Obscurin-like protein 1 22.7 42 0.0014 19.5 1.7 20 110-129 38-57 (107)
441 2qwv_A UPF0217 protein VC_A105 22.3 1.9E+02 0.0066 19.7 5.6 66 59-124 50-116 (208)
442 1dd4_C 50S ribosomal protein L 22.3 80 0.0027 15.3 2.5 16 24-39 19-34 (40)
443 2nvu_B Maltose binding protein 22.1 2.3E+02 0.0079 23.2 6.4 59 13-71 714-790 (805)
444 2he4_A Na(+)/H(+) exchange reg 21.2 1.2E+02 0.004 16.8 4.4 47 107-153 41-89 (90)
445 2cnr_A FAS, ACP, acyl carrier 20.7 31 0.0011 18.8 0.8 71 23-109 9-80 (82)
446 2y3a_A Phosphatidylinositol-4, 20.6 1.6E+02 0.0054 25.6 5.2 32 3-34 54-85 (1092)
447 3he4_B Synzip5; heterodimeric 20.3 64 0.0022 15.5 1.7 14 96-109 2-15 (46)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=4.1e-42 Score=232.66 Aligned_cols=153 Identities=30% Similarity=0.429 Sum_probs=147.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-E-cceEeccCceecccccccccceeeeee-eecce
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGT 77 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~-~g~~L~d~~~l~~~~i~~~~~i~l~~~-~~~~~ 77 (154)
|+|+|+.++|+.+.+++++++||.+||++|+..+++|++.|+|+ | +|+.|+|+.+|++|++.+++++++.++ ..++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999999 58899
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.++++||+
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.7e-41 Score=231.28 Aligned_cols=152 Identities=80% Similarity=1.158 Sum_probs=145.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+.++|+.+.+++++++||.+||++|+..+++|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..++|.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+..+|+++.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=6.2e-40 Score=220.28 Aligned_cols=152 Identities=80% Similarity=1.158 Sum_probs=148.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+.++|+.+.+++++++||.+||++|+..+++|+++|+|+|+|+.|+|+.+|++|++.+++++++..+..++|.++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 81 v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.88 E-value=2.1e-22 Score=123.02 Aligned_cols=77 Identities=84% Similarity=1.246 Sum_probs=72.5
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.++++||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999996
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.88 E-value=5.1e-22 Score=118.94 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=74.8
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
++|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.++++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999987
No 6
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=7.7e-22 Score=120.50 Aligned_cols=80 Identities=60% Similarity=0.987 Sum_probs=70.1
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGGL 154 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~~ 154 (154)
.+|+|+++..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+|++|++.++.+||++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999974
No 7
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=1.3e-21 Score=119.16 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=77.2
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGGL 154 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~~ 154 (154)
..|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++++||++
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~ 85 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPS 85 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCSC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999975
No 8
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1e-21 Score=119.16 Aligned_cols=78 Identities=58% Similarity=0.925 Sum_probs=72.7
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999999999985
No 9
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.86 E-value=1.2e-21 Score=119.63 Aligned_cols=79 Identities=81% Similarity=1.200 Sum_probs=76.2
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|.|+|+..+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.86 E-value=2.1e-21 Score=115.24 Aligned_cols=76 Identities=84% Similarity=1.234 Sum_probs=72.1
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=2.4e-21 Score=117.43 Aligned_cols=78 Identities=60% Similarity=0.943 Sum_probs=75.1
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999985
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.9e-21 Score=120.99 Aligned_cols=79 Identities=58% Similarity=0.907 Sum_probs=75.3
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=118.41 Aligned_cols=87 Identities=30% Similarity=0.503 Sum_probs=71.5
Q ss_pred cccccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCC
Q 040824 61 IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGG 140 (154)
Q Consensus 61 i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~ 140 (154)
..+++.+++.+.....|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45677888888888889999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CEEEEEEe
Q 040824 141 SVLHLVLA 148 (154)
Q Consensus 141 ~~i~~~~~ 148 (154)
++|+++.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999865
No 14
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.86 E-value=4e-21 Score=114.03 Aligned_cols=76 Identities=63% Similarity=0.993 Sum_probs=73.8
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+..+|+.+.+++++++||++||++|++.+++|++.|+|+|+|+.|+|+.+|++|++.+|++|++.++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.86 E-value=3.1e-21 Score=116.98 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=70.4
Q ss_pred eeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 72 ~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
...+.|+|+|++..|+++.+++.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|++..
T Consensus 17 ~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 17 RGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 3456689999999999999999999999999999999999999999999999999999999999999999999863
No 16
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.85 E-value=4.2e-21 Score=119.02 Aligned_cols=78 Identities=62% Similarity=0.953 Sum_probs=73.7
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
+|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999984
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.85 E-value=2e-21 Score=116.35 Aligned_cols=77 Identities=23% Similarity=0.476 Sum_probs=74.0
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.|.|+|+..+|+.+.+++.+++||.+||++++++.|+|+++|+|+|+|+.|+|+.||++|++++|++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999998
No 18
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=118.03 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=71.7
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..+.+||+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999985
No 19
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.2e-22 Score=127.67 Aligned_cols=101 Identities=74% Similarity=1.030 Sum_probs=93.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
++|+|+.++|+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|++|++.++++|++..+..+++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eee---cCCceEEEeeCCCchHHH
Q 040824 81 VKT---LTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 81 v~~---~~~~~~~~~v~~~~tv~~ 101 (154)
++. ..|+++.+++.+++||.+
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 883 467888888888888763
No 20
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=120.22 Aligned_cols=92 Identities=53% Similarity=0.780 Sum_probs=81.8
Q ss_pred cccccceeeeeee--------ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcc
Q 040824 61 IQKESTLHLVLRL--------RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTA 132 (154)
Q Consensus 61 i~~~~~i~l~~~~--------~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L 132 (154)
+.+|+++++.... ...|.|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 91 (111)
T 2ojr_A 12 WIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 91 (111)
T ss_dssp SCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBT
T ss_pred eecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH
Confidence 4555666555442 24699999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCEEEEEEeecCC
Q 040824 133 RDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 133 ~~~~i~~~~~i~~~~~~~gg 152 (154)
++|++.+|++|+++++++||
T Consensus 92 ~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 92 SDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTCCTTCEEEEEECCCC-
T ss_pred HHcCCCCCCEEEEEEeCCCC
Confidence 99999999999999999998
No 21
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.84 E-value=8.8e-21 Score=117.03 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=75.1
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCC-CcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|+|+|+..++ .+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|++|++|++.++.+||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4568999999877 889999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 040824 153 G 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 22
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.84 E-value=5.8e-21 Score=118.58 Aligned_cols=79 Identities=23% Similarity=0.456 Sum_probs=76.1
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|.|+|+..+|+.+.+.+.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+++++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3458999999999999999999999999999999999999999999999999999999999999999999999999998
No 23
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.84 E-value=1.4e-20 Score=119.57 Aligned_cols=78 Identities=62% Similarity=0.951 Sum_probs=74.7
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 358999999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2.2e-20 Score=114.26 Aligned_cols=79 Identities=35% Similarity=0.547 Sum_probs=75.3
Q ss_pred cceeeeeeecCC-ceEEE-eeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 75 GGTMIKVKTLTG-KEIEI-DIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~~-~~~~~-~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..|+|+|+..+| +.+.+ ++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 468999999988 68999 5999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 040824 153 G 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 5
No 25
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=112.55 Aligned_cols=74 Identities=35% Similarity=0.574 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998754
No 26
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.83 E-value=1.9e-20 Score=114.30 Aligned_cols=77 Identities=56% Similarity=0.934 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecce
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877653
No 27
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=116.18 Aligned_cols=77 Identities=27% Similarity=0.442 Sum_probs=71.9
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|+|+|+. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.++++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 3458899998 7889999999999999999999999999999999999999999999999999999999999999998
No 28
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.83 E-value=1.8e-20 Score=119.12 Aligned_cols=82 Identities=27% Similarity=0.443 Sum_probs=77.6
Q ss_pred eecceeeeeeec---CCceEEEeeCC-CchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 73 LRGGTMIKVKTL---TGKEIEIDIEP-TDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 73 ~~~~~~i~v~~~---~~~~~~~~v~~-~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
..+.|.|+|+.. +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 456789999998 78899999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 040824 149 LRGGGL 154 (154)
Q Consensus 149 ~~gg~~ 154 (154)
++||++
T Consensus 104 ~~GGk~ 109 (111)
T 1we6_A 104 ERSGPS 109 (111)
T ss_dssp SCCSSC
T ss_pred cCCCCC
Confidence 999975
No 29
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.83 E-value=3.2e-20 Score=113.97 Aligned_cols=77 Identities=60% Similarity=0.952 Sum_probs=73.5
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
...|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++++|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999875
No 30
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.83 E-value=4.6e-20 Score=114.77 Aligned_cols=77 Identities=62% Similarity=0.976 Sum_probs=73.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++..+.+||+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999884
No 31
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=2.8e-20 Score=112.77 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|+.+.|+.+.+++++++||.+||++|+++.|+|++.|+|.|.|+.|+|+.+|++|+|.+++++++-
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999874
No 32
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.83 E-value=3.8e-20 Score=115.16 Aligned_cols=88 Identities=83% Similarity=1.120 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|++|++.++++|++..+..++..++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred eeecCCce
Q 040824 81 VKTLTGKE 88 (154)
Q Consensus 81 v~~~~~~~ 88 (154)
.++.+|..
T Consensus 81 ~~~v~~~~ 88 (98)
T 1yx5_B 81 SSSVDKLA 88 (98)
T ss_dssp --------
T ss_pred cccCCCch
Confidence 88877654
No 33
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.82 E-value=5.4e-20 Score=112.71 Aligned_cols=77 Identities=34% Similarity=0.538 Sum_probs=73.1
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +|++|+++++.+++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999 89999999998765
No 34
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.2e-20 Score=112.19 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceE-eccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~-L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+. |+|+.+|++|++.++++|++.+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999 999999999999999999988753
No 35
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.81 E-value=1.1e-19 Score=123.38 Aligned_cols=77 Identities=61% Similarity=0.975 Sum_probs=73.6
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++.++++||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999984
No 36
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.81 E-value=1.2e-19 Score=107.64 Aligned_cols=75 Identities=56% Similarity=0.935 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887653
No 37
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=7.1e-20 Score=112.84 Aligned_cols=79 Identities=30% Similarity=0.458 Sum_probs=73.6
Q ss_pred cceeeeeeecCCc--eEEEeeCCCchHHHHHHHHhhhc--CCCCCceeEEECCeecCCCCccccc--ccCCCCEEEEEEe
Q 040824 75 GGTMIKVKTLTGK--EIEIDIEPTDTIERIKERVEEKE--GIPPVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLVLA 148 (154)
Q Consensus 75 ~~~~i~v~~~~~~--~~~~~v~~~~tv~~LK~~i~~~~--~i~~~~~~l~~~g~~l~d~~~L~~~--~i~~~~~i~~~~~ 148 (154)
..|.|+|+..+++ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+++++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4588999998887 57777889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred ecCCC
Q 040824 149 LRGGG 153 (154)
Q Consensus 149 ~~gg~ 153 (154)
.+||+
T Consensus 86 ~~gg~ 90 (93)
T 1wgd_A 86 VKSGP 90 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99985
No 38
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.5e-19 Score=107.79 Aligned_cols=75 Identities=28% Similarity=0.554 Sum_probs=70.6
Q ss_pred cceeeeeeecCCceE-EEe-eCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 75 GGTMIKVKTLTGKEI-EID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~-~~~-v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
++|+|+|+..+|+.+ .++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++.++.
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 468999999999885 899 999999999999999999999999999999999999999999999999999999875
No 39
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.81 E-value=9.2e-20 Score=110.17 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=70.9
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCee-cCCCCcccccccCCCCEEEEEEe
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ-LADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~-l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.-|+|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 458999999999999999999999999999999999999999999999999 99999999999999999999875
No 40
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.81 E-value=1.2e-19 Score=124.62 Aligned_cols=80 Identities=63% Similarity=0.982 Sum_probs=77.0
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
...|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999984
No 41
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.81 E-value=1.9e-19 Score=106.74 Aligned_cols=75 Identities=95% Similarity=1.308 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887654
No 42
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.4e-19 Score=112.55 Aligned_cols=75 Identities=97% Similarity=1.322 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|+++++..+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987654
No 43
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.81 E-value=1.2e-19 Score=111.36 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++||+.++++|++.++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998764
No 44
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.81 E-value=1.2e-19 Score=110.72 Aligned_cols=75 Identities=57% Similarity=0.958 Sum_probs=71.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987654
No 45
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.5e-19 Score=114.22 Aligned_cols=80 Identities=58% Similarity=0.915 Sum_probs=76.6
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.++.+|+++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..+.+||.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999984
No 46
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.81 E-value=2.1e-19 Score=111.31 Aligned_cols=79 Identities=91% Similarity=1.229 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i 79 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988776553
No 47
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2e-19 Score=109.74 Aligned_cols=75 Identities=87% Similarity=1.259 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.++|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887654
No 48
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.5e-19 Score=109.43 Aligned_cols=75 Identities=80% Similarity=1.153 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988654
No 49
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.80 E-value=2.5e-19 Score=109.72 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|+.+.++|++.|+|+|+|+.|+|+.+|++|++ ++++|+++++..+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 8999999988653
No 50
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.80 E-value=2.5e-19 Score=114.52 Aligned_cols=80 Identities=33% Similarity=0.547 Sum_probs=72.9
Q ss_pred cceeeeeeec----------CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEE
Q 040824 75 GGTMIKVKTL----------TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLH 144 (154)
Q Consensus 75 ~~~~i~v~~~----------~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~ 144 (154)
+++.|.|+.+ +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4456666654 477899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 040824 145 LVLALRGGGL 154 (154)
Q Consensus 145 ~~~~~~gg~~ 154 (154)
+.++++||++
T Consensus 104 lv~rl~GGk~ 113 (115)
T 1we7_A 104 LALKERSGPS 113 (115)
T ss_dssp EEECCCSCCS
T ss_pred EEEEcCCCCC
Confidence 9999999974
No 51
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=3.2e-19 Score=108.01 Aligned_cols=75 Identities=92% Similarity=1.241 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987654
No 52
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.4e-19 Score=109.72 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEEe--CCCcHHHHHHHH-HhHhCCCCCCeEEEEcceEeccCceeccccc-ccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~--~~~tv~~lk~~i-~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 73 (154)
|+|+||+.+|+.+.++++ +++||.+||++| +...|+|+++|+|+|.|+.|+|+.+|++|++ .++++|++..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988766 999999999999 9999999999999999999999999999999 799999988875
No 53
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=106.85 Aligned_cols=76 Identities=37% Similarity=0.578 Sum_probs=71.8
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
..|.|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+|++|+++++++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 4589999998899999999999999999999999999999999999999999999999999999999999988753
No 54
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=6.9e-19 Score=108.78 Aligned_cols=76 Identities=32% Similarity=0.627 Sum_probs=71.3
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhh---cCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK---EGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~---~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|+|+|+..+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++...|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 689999999999999999999999999999999 7899999999999999999999999999999999999876543
No 55
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=108.43 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++ ++++||++++
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999 8999998764
No 56
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.5e-20 Score=114.23 Aligned_cols=92 Identities=35% Similarity=0.615 Sum_probs=67.2
Q ss_pred ceecccccccccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCccc
Q 040824 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAR 133 (154)
Q Consensus 54 ~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~ 133 (154)
...++|.+. ++.++.....-.+.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 467889885 4555555555557788887 8889999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCEEEEEEe
Q 040824 134 DYNIEGGSVLHLVLA 148 (154)
Q Consensus 134 ~~~i~~~~~i~~~~~ 148 (154)
+|||++|++|+++.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999998765
No 57
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=1.5e-19 Score=111.54 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|+.+.|+.+.+++++++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++|+|.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999876
No 58
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.80 E-value=2.1e-19 Score=107.49 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++++++.++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999987654
No 59
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=2.2e-19 Score=110.85 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=69.0
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.|.|+|++..|+.+.+++.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.++++|++..
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 389999999999999999999999999999999999999999999999999999999999999999998863
No 60
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.4e-19 Score=106.27 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEE-EEE-EeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~-~~~-v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+ .++ +++++||.+||++|+...++|+++|+|+|+|+.|+|+.+|++|++.++++|++.+++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999885 899 999999999999999999999999999999999999999999999999999998764
No 61
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=109.77 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|+...++|+++|+|+|+|+.|+|+.+|++|++.++++|++..+..+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999887654
No 62
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.79 E-value=1.4e-18 Score=117.90 Aligned_cols=83 Identities=90% Similarity=1.208 Sum_probs=75.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987765544
Q ss_pred eee
Q 040824 81 VKT 83 (154)
Q Consensus 81 v~~ 83 (154)
|+.
T Consensus 81 vkf 83 (169)
T 3l0w_B 81 IKF 83 (169)
T ss_dssp EEE
T ss_pred ccc
Confidence 443
No 63
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.2e-19 Score=110.67 Aligned_cols=79 Identities=28% Similarity=0.369 Sum_probs=74.0
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
...|.|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.+||+
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 34589999998886 68999999999999999999999999999999999999999999999999999999999999874
No 64
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.79 E-value=6.5e-21 Score=124.05 Aligned_cols=78 Identities=59% Similarity=0.927 Sum_probs=1.1
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGGL 154 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~~ 154 (154)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+++++++||.+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~ 78 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII 78 (128)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999964
No 65
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-19 Score=105.49 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999988764
No 66
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.9e-19 Score=107.71 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887654
No 67
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.7e-19 Score=111.78 Aligned_cols=78 Identities=23% Similarity=0.274 Sum_probs=74.3
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|+|+.. |+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+||+
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 4588999997 88999999999999999999999999999999999999999999999999999999999999999985
No 68
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.9e-19 Score=108.33 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=68.3
Q ss_pred eeeeeeecCCceEEEeeC--CCchHHHHHHHH-hhhcCCCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEee
Q 040824 77 TMIKVKTLTGKEIEIDIE--PTDTIERIKERV-EEKEGIPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~--~~~tv~~LK~~i-~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~ 149 (154)
|+|+|++.+|+++.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|++....
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 789999999998888755 999999999999 9999999999999999999999999999999 799999998764
No 69
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.66 E-value=7.2e-21 Score=113.04 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=72.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
|+|+|+..+|+.+.+++++++||++||+++++.+|+|++.|+|+|+|+.|+|+.+|++||+.+|++|++.++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999987
No 70
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=1.2e-18 Score=107.72 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhH---hCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~---~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|+.. .++|+++|+|+|+|+.|+|+.+|++|++.++++|++..+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999887643
No 71
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.79 E-value=1.6e-18 Score=105.00 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=70.6
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhh---cCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK---EGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~---~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
..|.|+|+..+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+..
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 46899999999999999999999999999999998 89999999999999999999999999999999999987653
No 72
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.6e-19 Score=111.26 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=69.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998753
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3e-19 Score=112.50 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+.++|+.+.+++++++||.+||++|+...++|+++|+|+|+|+.|+|+.+|++|+++++++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998754
No 74
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.78 E-value=7.4e-19 Score=111.56 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.++|+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|.|+.+|++|++.++++|++.++..+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988654
No 75
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.78 E-value=9.6e-19 Score=108.26 Aligned_cols=76 Identities=22% Similarity=0.406 Sum_probs=69.4
Q ss_pred ecceeeeeeecCCceEEE--eeCCCchHHHHHHHH-hhhcCCCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEee
Q 040824 74 RGGTMIKVKTLTGKEIEI--DIEPTDTIERIKERV-EEKEGIPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLAL 149 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~--~v~~~~tv~~LK~~i-~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~ 149 (154)
...|.|+|++.+|+.+.+ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|++++..
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 456999999999987766 566999999999999 8889999999999999999999999999999 999999998864
No 76
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.2e-18 Score=112.65 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=70.2
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+.+||+
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 4588999998 88999999999999999999999999999999999999999999999999999999999999999985
No 77
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.78 E-value=1.2e-18 Score=105.54 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhH---hCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~---~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|+.. .++|+++|+|+|+|+.|+|+.+|++|++.++++|++..+..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 88999999999999999999999999999999999987653
No 78
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=9.8e-19 Score=107.81 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccC-ceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..++ .+.+++++++||.+||++|+...++|+++|+|+|+|+.|+|+ .+|++|+++++++|+++++..++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999877 899999999999999999999999999999999999999999 99999999999999999887653
No 79
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1.2e-18 Score=106.47 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=71.5
Q ss_pred CEEEEEeCCC-CEEEE-EEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~-~~~~~-~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+| +.+.+ ++++++||.+||++|+...++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999999 79999 5999999999999999999999999999999999999999999999999999999887644
No 80
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.78 E-value=5.7e-19 Score=121.21 Aligned_cols=83 Identities=88% Similarity=1.166 Sum_probs=79.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+++.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|+++++..++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred eee
Q 040824 81 VKT 83 (154)
Q Consensus 81 v~~ 83 (154)
|+.
T Consensus 186 vk~ 188 (189)
T 3q3f_A 186 TKI 188 (189)
T ss_dssp CCC
T ss_pred Eec
Confidence 653
No 81
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=8.7e-19 Score=108.16 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=62.7
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
++.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 6789999999999999999999999999999999999999999999999999999999 77777764
No 82
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.78 E-value=1e-18 Score=108.17 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEE--EEeCCCcHHHHHHHH-HhHhCCCCCCeEEEEcceEeccCceeccccc-ccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~--~v~~~~tv~~lk~~i-~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 73 (154)
|+|+||+.+|+.|.+ ++++++||.+||++| +...++|+++|+|+|+|+.|+|+.+|++|+| +++++|++.++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 8888999999999999999999999999999 999999998764
No 83
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.77 E-value=2.6e-18 Score=102.06 Aligned_cols=71 Identities=38% Similarity=0.684 Sum_probs=67.8
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
|.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7889998 8999999999999999999999999999999999999999999999999999999999998764
No 84
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.77 E-value=1.6e-18 Score=103.04 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+. +|+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|++|++.++++|++..++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6789998 89999999999999999999999999999999999999999999999999999999999887653
No 85
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=8e-19 Score=108.87 Aligned_cols=75 Identities=17% Similarity=0.425 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++.+++||.+||++|+.+.++|++.|+|+|+|+.|.|+.+|++|++.++++|++.++..+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999987654
No 86
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.77 E-value=1.9e-20 Score=124.66 Aligned_cols=77 Identities=61% Similarity=0.975 Sum_probs=0.0
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999985
No 87
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=106.81 Aligned_cols=79 Identities=25% Similarity=0.325 Sum_probs=73.0
Q ss_pred eecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 73 ~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
....|.|+|+.. |+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+++.+.++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 345689999997 7889999999999999999999999999999999999999999999999999999999999988754
No 88
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.4e-18 Score=108.35 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=74.1
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|.|+|+..+|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999887654
No 89
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.9e-18 Score=108.84 Aligned_cols=78 Identities=28% Similarity=0.378 Sum_probs=73.3
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|+|+..+++ +.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.+||+
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 4488999998876 78999999999999999999999999999999999999999999999999999999999999875
No 90
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=106.52 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+. |+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|+++++..+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G 92 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG 92 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 7899997 799999999999999999999999999999999999999999999999999999999999987654
No 91
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=1.8e-18 Score=108.28 Aligned_cols=79 Identities=19% Similarity=0.387 Sum_probs=72.2
Q ss_pred cceeeeeeecCC----ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCC-CcccccccCCCCEEEEEEee
Q 040824 75 GGTMIKVKTLTG----KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~~----~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~~~~ 149 (154)
..|+|+|+..++ +.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|++|++|++..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 348888888644 6889999999999999999999999999999999999999877 69999999999999999999
Q ss_pred cCCC
Q 040824 150 RGGG 153 (154)
Q Consensus 150 ~gg~ 153 (154)
+||.
T Consensus 86 ~gg~ 89 (102)
T 1v5o_A 86 NVGL 89 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9873
No 92
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.76 E-value=2e-18 Score=109.48 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=67.5
Q ss_pred eeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccC-------CCCEEEEEEe
Q 040824 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIE-------GGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~-------~~~~i~~~~~ 148 (154)
|.++++...++ ++.+++.+++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++|||+ ++++|++.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34555555554 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCCC
Q 040824 149 LRGGG 153 (154)
Q Consensus 149 ~~gg~ 153 (154)
.||.
T Consensus 81 -~~g~ 84 (118)
T 2fnj_B 81 -ADDT 84 (118)
T ss_dssp -SSSC
T ss_pred -CCCc
Confidence 6663
No 93
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.62 E-value=4.1e-20 Score=109.77 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++.++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999887653
No 94
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=115.70 Aligned_cols=79 Identities=61% Similarity=0.947 Sum_probs=75.4
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++||
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999998876
No 95
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.6e-18 Score=105.82 Aligned_cols=75 Identities=28% Similarity=0.459 Sum_probs=69.2
Q ss_pred CEEEEEeCCCC--EEEEEEeCCCcHHHHHHHHHhHh--CCCCCCeEEEEcceEeccCceeccc--ccccccceeeeeeee
Q 040824 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~--~~~~~v~~~~tv~~lk~~i~~~~--~~~~~~q~L~~~g~~L~d~~~l~~~--~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+++ .+.+++++++||.+||++|++.. ++|+++|+|+|.|+.|+|+.+|++| ++.++++||++++..
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999888 56677779999999999999998 9999999999999999999999999 999999999998765
Q ss_pred c
Q 040824 75 G 75 (154)
Q Consensus 75 ~ 75 (154)
+
T Consensus 88 g 88 (93)
T 1wgd_A 88 S 88 (93)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1e-18 Score=109.10 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=71.4
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC---------------ceeEEECCeecC-CCCcccccccCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV---------------QQRLIYAGKQLA-DDKTARDYNIEG 139 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~---------------~~~l~~~g~~l~-d~~~L~~~~i~~ 139 (154)
.|.|+|+..+|+.+.++|.+++||++||++|+++.++|+. +|+|+|+|+.|. |+.||++|||++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 4899999999999999999999999999999999999873 569999999996 679999999999
Q ss_pred CCEEEEEEeecCC
Q 040824 140 GSVLHLVLALRGG 152 (154)
Q Consensus 140 ~~~i~~~~~~~gg 152 (154)
|++|+++.+++|.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999999874
No 97
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.75 E-value=8.2e-18 Score=106.77 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999987654
No 98
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.75 E-value=9.4e-18 Score=107.52 Aligned_cols=79 Identities=29% Similarity=0.412 Sum_probs=71.8
Q ss_pred cceeeeeeecCCceE-EEeeCCCchHHHHHHHH-----hhhcCCCC--CceeEEECCeecCCCCcccccccCCC------
Q 040824 75 GGTMIKVKTLTGKEI-EIDIEPTDTIERIKERV-----EEKEGIPP--VQQRLIYAGKQLADDKTARDYNIEGG------ 140 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~-~~~v~~~~tv~~LK~~i-----~~~~~i~~--~~~~l~~~g~~l~d~~~L~~~~i~~~------ 140 (154)
..|.|+++..+|+.+ ++++++++||.+||++| +.+.++|+ ++|+|+|.|+.|+|+.||++|+|+.|
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 568999999999888 79999999999999999 45667886 89999999999999999999999998
Q ss_pred CEEEEEEeecCCC
Q 040824 141 SVLHLVLALRGGG 153 (154)
Q Consensus 141 ~~i~~~~~~~gg~ 153 (154)
.++++.++++||+
T Consensus 95 ~tmhlVlrl~g~~ 107 (126)
T 1se9_A 95 TTMHVIIQAPVTE 107 (126)
T ss_dssp EEEEEEECCCSSC
T ss_pred EEEEEEeccCCcc
Confidence 6899999999874
No 99
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.75 E-value=5.9e-18 Score=106.87 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=70.1
Q ss_pred CEEEEEeCCCC-EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceeccccccc-------ccceeeeee
Q 040824 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~-~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~-------~~~i~l~~~ 72 (154)
|.++++.+.++ ++.+++.+++||.+||++|+.+.|+|++.|+|+|+|+.|+|+.+|++|||.+ +++++++++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78899888777 6889999999999999999999999999999999999999999999999999 999999998
Q ss_pred eec
Q 040824 73 LRG 75 (154)
Q Consensus 73 ~~~ 75 (154)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 100
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.9e-18 Score=107.40 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|+...++++++|+|+|+|+.|+|+.+|++|++.++++|+++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999988654
No 101
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.74 E-value=7.8e-18 Score=106.31 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=67.2
Q ss_pred eeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCC-------CCEEEEEEe
Q 040824 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEG-------GSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~-------~~~i~~~~~ 148 (154)
|.++++...++ ++.+++.+++||.+||++|+.+.|+|+++|+|+|.|+.|+|++||++|||++ +++|++.++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 34555555454 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecCC
Q 040824 149 LRGG 152 (154)
Q Consensus 149 ~~gg 152 (154)
. ||
T Consensus 81 ~-~~ 83 (118)
T 4ajy_B 81 A-DD 83 (118)
T ss_dssp C-SS
T ss_pred c-CC
Confidence 7 44
No 102
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=5.2e-18 Score=105.69 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+ +.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|++..+..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 68999998886 799999999999999999999999999999999999999999999999999999999887654
No 103
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=9.9e-18 Score=104.63 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+.. |+.+.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|++|++.++++|++..+..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 68999998 88899999999999999999999999999999999999999999999999999999999988754
No 104
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3.9e-18 Score=105.60 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.. |+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..+
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 68999998 899999999999999999999999999999999999999999999999999999999999887654
No 105
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.73 E-value=1.1e-17 Score=112.56 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|+.+.++|++.|+|+|+|+.|+|+.+|++|++.+++++++.++..++
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987654
No 106
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=8.7e-18 Score=106.51 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=67.5
Q ss_pred CEEEEEeCCCC-EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccc-------cccceeeeee
Q 040824 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~-~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~-------~~~~i~l~~~ 72 (154)
|+++|+.+.++ ++.+++.+++||.+||++|+.+.|+|++.|+|+|+|+.|+|+.+|++|||. ++++++++++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888887776 589999999999999999999999999999999999999999999999999 7999999888
No 107
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=2.6e-18 Score=107.24 Aligned_cols=75 Identities=24% Similarity=0.395 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC---------------CeEEEEcceEec-cCceecccccccc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~---------------~q~L~~~g~~L~-d~~~l~~~~i~~~ 64 (154)
|+|+|+..+|+.+++++++++||.+||++|+++.++|+. .|+|+|+|+.|. |+.+|++|+|.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 799999999999999999999999999999999998874 569999999996 6689999999999
Q ss_pred cceeeeeeeec
Q 040824 65 STLHLVLRLRG 75 (154)
Q Consensus 65 ~~i~l~~~~~~ 75 (154)
++|+++.+.++
T Consensus 88 ~~l~lv~~lr~ 98 (105)
T 1v2y_A 88 DEVSFIKKLGQ 98 (105)
T ss_dssp EEEEEEECSCS
T ss_pred CEEEEEehhcc
Confidence 99999988654
No 108
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.2e-17 Score=106.75 Aligned_cols=74 Identities=31% Similarity=0.405 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.. |+.+.+++++++||.+||++|+...++++++|+|+|+|+.|+|+.+|++|+|.++++|+++.+..+
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 68999998 899999999999999999999999999999999999999999999999999999999999887654
No 109
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.4e-17 Score=102.76 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=63.3
Q ss_pred EEEEEeCC----CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~----~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
.+.|+.++ ++.+.+++++++||.+||++|+++.++|++.|+|+|+|+.|+|+.+|++|+|+++++|+++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEE
Confidence 36677776 6789999999999999999999999999999999999999999999999999999999443
No 110
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.73 E-value=3.7e-17 Score=101.66 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=66.1
Q ss_pred eeeeeeecCC--ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEe
Q 040824 77 TMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~--~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~ 148 (154)
|.++|++..+ ..+.+++.+++||++||++|++++|+|++.|||++.|+.++|+.||.+||| ++|+++++++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6677888764 679999999999999999999999999999999999999999999999999 69999998874
No 111
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=4.1e-17 Score=103.57 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=70.1
Q ss_pred eecceeeeeeecCCceEEEeeCCCchHHHHHHHHhh------hcCC--CCCceeEEECCeecCCCCcccccccCCC--CE
Q 040824 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE------KEGI--PPVQQRLIYAGKQLADDKTARDYNIEGG--SV 142 (154)
Q Consensus 73 ~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~------~~~i--~~~~~~l~~~g~~l~d~~~L~~~~i~~~--~~ 142 (154)
+...|.|+++..+|+++.+++++++||.+||++|+. +.++ |+++|+|+|.|+.|+|+.||++|+|..+ .+
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 445699999999999999999999999999999998 5564 6999999999999999999999999877 46
Q ss_pred EEEEEeecCC
Q 040824 143 LHLVLALRGG 152 (154)
Q Consensus 143 i~~~~~~~gg 152 (154)
+|+.++..+.
T Consensus 93 lhLvlr~~~~ 102 (116)
T 1wgh_A 93 MHLVARETLP 102 (116)
T ss_dssp EEEEECSSCS
T ss_pred EEEEccCCCC
Confidence 7777776543
No 112
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=104.33 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+++ +.+++++++||.+||++|++..++++++|+|+|+|+.|+|+.+|++|+|.++++|++..+..+
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998876 799999999999999999999999999999999999999999999999999999999987653
No 113
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.72 E-value=1.1e-17 Score=106.21 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=71.1
Q ss_pred CEEEEEeC---CCCEEEEEEeC-CCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~---~~~~~~~~v~~-~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+.. +|+.+.+++++ ++||.+||++|+..+++|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 78899999997 999999999999999999999999999999999999999999999999999886643
No 114
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=2.1e-17 Score=103.38 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=68.8
Q ss_pred CEEEEEeCCC----CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccC-ceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~----~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..++ +.+.+++++++||.+||++|+..+++|+++|+|+|+|+.|+|+ .+|++|+|+++++|++..+..+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899998754 6899999999999999999999999999999999999999987 6999999999999999887654
No 115
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.5e-18 Score=105.73 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=66.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|+|+|++ +|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+++++++|+++.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4678886 8888999999999999999999999999999999999999999999999999999999998865
No 116
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=105.58 Aligned_cols=78 Identities=27% Similarity=0.348 Sum_probs=70.5
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhh------hcCC--CCCceeEEECCeecCCCCcccccccCCCC--EEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE------KEGI--PPVQQRLIYAGKQLADDKTARDYNIEGGS--VLH 144 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~------~~~i--~~~~~~l~~~g~~l~d~~~L~~~~i~~~~--~i~ 144 (154)
..|.|+++..+|+++.+++++++||.+||++|++ +.++ ++++|+|+|.|+.|+|+.||++|+|+.++ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 3488999999999999999999999999999998 6677 48999999999999999999999999776 788
Q ss_pred EEEeecCC
Q 040824 145 LVLALRGG 152 (154)
Q Consensus 145 ~~~~~~gg 152 (154)
+.++.+++
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 88888775
No 117
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.71 E-value=4.8e-19 Score=115.17 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|.++++|++.++..++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999886643
No 118
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.71 E-value=5.5e-17 Score=108.20 Aligned_cols=76 Identities=63% Similarity=0.993 Sum_probs=72.7
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
|.|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+.+||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999888765
No 119
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=103.03 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=70.2
Q ss_pred EEEEE-eCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeeccee
Q 040824 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (154)
Q Consensus 2 ~v~v~-~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~ 78 (154)
.|+|+ ..+++.+.++++++.||.+||+.++..+++|++.|+|.|+|+.|+|+.+|++||++++.+|||.++..++-.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence 46666 557888999999999999999999999999999999999999999999999999999999999998765533
No 120
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=5.3e-17 Score=99.75 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=75.8
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|.|+..+|+.+.+.+.+++++..|+++++++.|+|++.++|+|.|+.|.++.|+++|++++||+|+++.+++||.
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999999984
No 121
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.71 E-value=4.4e-17 Score=99.64 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=68.4
Q ss_pred cceeeeeeecCCceEEE-eeCCCchHHHHHHHHhhhcCCCCCceeEE---ECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 75 GGTMIKVKTLTGKEIEI-DIEPTDTIERIKERVEEKEGIPPVQQRLI---YAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~-~v~~~~tv~~LK~~i~~~~~i~~~~~~l~---~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
..|.|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|.+|++|+++...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 358899987 7889999 99999999999999999999999999999 99999999999999999999999887543
No 122
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=101.93 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=63.3
Q ss_pred CEEEEEeCCCC--EEEEEEeCCCcHHHHHHHHHhHh-CCC-CCCeEEEEcceEeccCceeccc--ccccccceeee
Q 040824 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~--~~~~~v~~~~tv~~lk~~i~~~~-~~~-~~~q~L~~~g~~L~d~~~l~~~--~i~~~~~i~l~ 70 (154)
|+|+||..+++ .+.+++++++||.+||++|+++. +.| ++.|+|+|.|+.|+|+.+|++| ++.++++|+++
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999887 67899999999999999999864 555 5999999999999999999999 99999999874
No 123
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=3e-17 Score=101.44 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEE-EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~-~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+. .|+.+ .+++++++||.+||++|++.+++|+++|+|+|.|+.|+|+ +|++|+|+++++|+++....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899995 78889 6999999999999999999999999999999999999999 99999999999999887654
No 124
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=8.4e-17 Score=97.34 Aligned_cols=69 Identities=25% Similarity=0.474 Sum_probs=63.7
Q ss_pred eeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 80 ~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++..
T Consensus 15 ~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 15 LTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 344558889999999999999999999999999999999999999999999999999999999988753
No 125
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=7.6e-17 Score=97.53 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.0
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
..++.++|+.+.+++++++||.+||++|+...++|+++|+|+|+|+.|+|+.+|++|+++++++|++...
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3456678999999999999999999999999999999999999999999999999999999999988764
No 126
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=9.4e-17 Score=101.93 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHh------HhCC--CCCCeEEEEcceEeccCceecccccccc--cceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~------~~~~--~~~~q~L~~~g~~L~d~~~l~~~~i~~~--~~i~l~ 70 (154)
|+|+|++.+|+++++++++++||.+||++|+. +.++ +++.|+|+|.|+.|+|+.+|++|+|..+ .++|++
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999998 5564 6999999999999999999999999755 578888
Q ss_pred eeee
Q 040824 71 LRLR 74 (154)
Q Consensus 71 ~~~~ 74 (154)
++..
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 7654
No 127
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.70 E-value=9.3e-17 Score=99.85 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=67.4
Q ss_pred CEEEEEeCCC--CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceeccccc-ccccceeeeeee
Q 040824 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~ 73 (154)
|+|+|+...+ ..+.+++++++||.+||++|+++.|+||+.|+|+|+|+.++|+.+|++||| .+|++++|.+..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 5789998874 678999999999999999999999999999999999999999999999999 599999998754
No 128
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.70 E-value=3.6e-17 Score=100.03 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCEEEE-EEeCCCcHHHHHHHHHhHhCCCCCCeEEE---EcceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~-~v~~~~tv~~lk~~i~~~~~~~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+. +|+.+.+ ++++++||.+||++|++.+++|+++|+|+ |.|+.|+|+.+|++|+++++++|+++....
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 7899996 7899999 99999999999999999999999999999 999999999999999999999998876643
No 129
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=101.02 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=64.1
Q ss_pred cceeeeeeecCCc--eEEEeeCCCchHHHHHHHHhhh-cCCC-CCceeEEECCeecCCCCccccc--ccCCCCEEEEE
Q 040824 75 GGTMIKVKTLTGK--EIEIDIEPTDTIERIKERVEEK-EGIP-PVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~~~--~~~~~v~~~~tv~~LK~~i~~~-~~i~-~~~~~l~~~g~~l~d~~~L~~~--~i~~~~~i~~~ 146 (154)
..|.|+|+..+++ .+.+++++++||.+||++|++. .|.| +++|+|+|.|+.|+|+.+|++| +|+++++|++.
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4589999998887 5788999999999999999986 4655 5999999999999999999999 99999999873
No 130
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.69 E-value=1.4e-18 Score=115.61 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|+|.++++|+++++..++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987654
No 131
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=2e-16 Score=96.54 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=75.7
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|.|+..+|+.+.+.+.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|++++++++||+|+++..++||.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999999995
No 132
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-16 Score=98.43 Aligned_cols=74 Identities=28% Similarity=0.407 Sum_probs=69.1
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCC-CcccccccCCCCEEEEEEeecC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~-~~L~~~~i~~~~~i~~~~~~~g 151 (154)
..|.|+|+..+|+.+.+++++++||.+||++|+..+ +++|+|+|+|+.|+|+ .+|++|+|.+|++|+++.+..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 458999999999999999999999999999999987 8999999999999999 9999999999999999988755
No 133
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-16 Score=102.29 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEE-EEEEeCCCcHHHHHHHH-----HhHhCCCC--CCeEEEEcceEeccCceecccccccc------cc
Q 040824 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (154)
Q Consensus 1 m~v~v~~~~~~~~-~~~v~~~~tv~~lk~~i-----~~~~~~~~--~~q~L~~~g~~L~d~~~l~~~~i~~~------~~ 66 (154)
|+|+|+..+|+.+ ++++++++||.+||++| +.+.++|+ +.|+|+|.|+.|+|+.+|++|+|..+ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 79999999999999999 45667886 89999999999999999999999988 57
Q ss_pred eeeeeeeec
Q 040824 67 LHLVLRLRG 75 (154)
Q Consensus 67 i~l~~~~~~ 75 (154)
++++++..+
T Consensus 97 mhlVlrl~g 105 (126)
T 1se9_A 97 MHVIIQAPV 105 (126)
T ss_dssp EEEEECCCS
T ss_pred EEEEeccCC
Confidence 888887654
No 134
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.7e-16 Score=99.96 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=69.1
Q ss_pred cceeeeeeecCC---ceEEEeeCC---------CchHHHHHHHHhhhc--CCCCCc-eeEEECCeecCCCCcccccccCC
Q 040824 75 GGTMIKVKTLTG---KEIEIDIEP---------TDTIERIKERVEEKE--GIPPVQ-QRLIYAGKQLADDKTARDYNIEG 139 (154)
Q Consensus 75 ~~~~i~v~~~~~---~~~~~~v~~---------~~tv~~LK~~i~~~~--~i~~~~-~~l~~~g~~l~d~~~L~~~~i~~ 139 (154)
..|.|+|+..++ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458899999888 788899554 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEeec
Q 040824 140 GSVLHLVLALR 150 (154)
Q Consensus 140 ~~~i~~~~~~~ 150 (154)
|++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999988764
No 135
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.68 E-value=1.1e-16 Score=102.09 Aligned_cols=76 Identities=29% Similarity=0.577 Sum_probs=69.2
Q ss_pred CEEEEEeCC----------CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~----------~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
++|.|+.++ |+.+.+++++++||.+||++|+...++|+++|+|+|.|+.|+|+.+|++|++.++++|+++
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 467777764 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecc
Q 040824 71 LRLRGG 76 (154)
Q Consensus 71 ~~~~~~ 76 (154)
++..++
T Consensus 106 ~rl~GG 111 (115)
T 1we7_A 106 LKERSG 111 (115)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 887654
No 136
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=9.2e-17 Score=99.26 Aligned_cols=71 Identities=17% Similarity=0.333 Sum_probs=65.8
Q ss_pred ceeeeeeecCCceE-EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 76 GTMIKVKTLTGKEI-EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 76 ~~~i~v~~~~~~~~-~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.|.|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+++..
T Consensus 7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 47888986 67889 6999999999999999999999999999999999999999 999999999999988754
No 137
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.1e-16 Score=98.83 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccC-ceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|+... +++|+|+|+|+.|+|+ .+|++|++.++++|+++.+..
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7899999999999999999999999999999887 8999999999999999 999999999999999988754
No 138
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=9.1e-17 Score=101.27 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.1
Q ss_pred CEEEEEeCCC---CEEEEEEeC---------CCcHHHHHHHHHhHh--CCCCCC-eEEEEcceEeccCceeccccccccc
Q 040824 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (154)
Q Consensus 1 m~v~v~~~~~---~~~~~~v~~---------~~tv~~lk~~i~~~~--~~~~~~-q~L~~~g~~L~d~~~l~~~~i~~~~ 65 (154)
|+|+||..++ +.+.+++++ ++||.+||++|+... ++|++. |+|+|.|+.|+|+.+|++|++++++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 6899999988 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred ceeeeeeee
Q 040824 66 TLHLVLRLR 74 (154)
Q Consensus 66 ~i~l~~~~~ 74 (154)
+|+++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988754
No 139
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=103.17 Aligned_cols=74 Identities=24% Similarity=0.412 Sum_probs=66.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHh------HhCC--CCCCeEEEEcceEeccCceeccccccccc--ceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~------~~~~--~~~~q~L~~~g~~L~d~~~l~~~~i~~~~--~i~l~ 70 (154)
|.|+|++.+|+++++++++++||.+||++|+. +.++ +++.|+|+|.|+.|+|+.+|++|+|..++ +++++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67899999999999999999999999999998 6777 48999999999999999999999998665 67777
Q ss_pred eeee
Q 040824 71 LRLR 74 (154)
Q Consensus 71 ~~~~ 74 (154)
++..
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 7764
No 140
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=2e-16 Score=97.06 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=66.5
Q ss_pred CEEEEEeCCCCEEEEEEeCC-----CcHHHHHHHHHhHhCCCCCCeEEEEcceEecc-Cceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~-----~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d-~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|++ .++.+.++++++ +||.+||++|+..+++|+++|+|+|.|+.|.| +.+|++|+++++++|+++....
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 578899999985 99999999999999999999999999999998 5689999999999999887654
No 141
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=97.88 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=67.1
Q ss_pred eeeeee-ecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 77 TMIKVK-TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~-~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
+.+.|+ ...++.+.++++++.||.+||++++...++|++.|+|+|+|+.|+|+.||.+|||++|.+||+.++.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 455655 4567889999999999999999999999999999999999999999999999999999999999875
No 142
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=3.9e-16 Score=95.78 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=66.9
Q ss_pred cceeeeeeecCCceEEEeeCCC-----chHHHHHHHHhhhcCCCCCceeEEECCeecCC-CCcccccccCCCCEEEEEEe
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPT-----DTIERIKERVEEKEGIPPVQQRLIYAGKQLAD-DKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~-----~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d-~~~L~~~~i~~~~~i~~~~~ 148 (154)
..|.|+|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|.+|++|+++.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 357888988 577889999995 99999999999999999999999999999998 66899999999999998865
Q ss_pred e
Q 040824 149 L 149 (154)
Q Consensus 149 ~ 149 (154)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 143
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.66 E-value=7e-18 Score=115.16 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=1.1
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGGL 154 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~~ 154 (154)
|+|+|++.+|+++.++|++++||.+||++|+...|+|+++|+|+|.|+.|+|+.+|+ ++++|+++++++||+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~ 73 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK 73 (189)
T ss_dssp ----------------------------------------------------------------------------CC
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence 689999999999999999999999999999999999999999999999999999998 8999999999999963
No 144
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=97.21 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=65.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE--cceEeccCceecccccccccceeeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~--~g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
|..+++.++|+.+.+++++++||.+||++|++++|+||++|+|++ .|+ |+|+.+|++|+|++++++++++...
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 456677789999999999999999999999999999999999985 455 8999999999999999999987654
No 145
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.65 E-value=8.7e-16 Score=94.21 Aligned_cols=78 Identities=17% Similarity=0.354 Sum_probs=72.0
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..|.|.|+..+|+.+.+.+.+++++..|+..++++.|++++.++|+|.|+.|.++.|+++|++.+|++|+++.+++||
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 457888999899999999999999999999999999999999999999999999999999999999999999999998
No 146
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=9.6e-17 Score=99.03 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=64.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+. +++.+.+++++++||.+||++|+..+++|+++|+|+|.|+.| |+.+|++|+++++++|+++...
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 5788984 688999999999999999999999999999999999999999 4559999999999999887654
No 147
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.65 E-value=4.8e-16 Score=94.00 Aligned_cols=66 Identities=29% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC-------CeecCCCCcccccccCCCCEEEEEEeec
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA-------GKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~-------g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
..+.++.++++++||.+||++|+..+|+|+++|+|+|. |+.++|+++|++|||++|++||++-..+
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 44567899999999999999999999999999999974 7789999999999999999999986543
No 148
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.65 E-value=9.4e-16 Score=112.23 Aligned_cols=78 Identities=60% Similarity=0.952 Sum_probs=71.9
Q ss_pred eecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 73 ~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
....|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 346799999999999999999999999999999999999999999999999999999999999999999999998874
No 149
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.64 E-value=6.3e-16 Score=95.12 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=62.0
Q ss_pred cceeeeeeecCC--ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC--Ce---e-cCCCCcccccccCCCCEEEEE
Q 040824 75 GGTMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA--GK---Q-LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~~--~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~--g~---~-l~d~~~L~~~~i~~~~~i~~~ 146 (154)
+.+.|+|+...+ ..+.+++++++||++||++|+..+|+|+++|+|+|. |+ . ++|+.+|++|+|++|++|++.
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 335666776554 478899999999999999999999999999999997 44 3 489999999999999999886
No 150
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.64 E-value=9.4e-16 Score=94.34 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=61.8
Q ss_pred CEEEEEeCCCC--EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc--ce---Ee-ccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~--~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~--g~---~L-~d~~~l~~~~i~~~~~i~l~ 70 (154)
++|+|+..+++ .+++++++++||.+||++|+.++|+||+.|+|+|. |+ .| +|+.+|++|++.++++|+++
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 36788877664 78999999999999999999999999999999997 44 34 88999999999999999875
No 151
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.7e-16 Score=96.99 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=64.9
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
.|.|+|+. .++.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+| .+|++|+|++|++|+++...
T Consensus 17 ~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 47788885 68889999999999999999999999999999999999999955 59999999999999987543
No 152
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.1e-15 Score=95.42 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=75.8
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..|.|.|+..+|+.+.+.+.+++++..|+.+++++.|+++..++|+|.|+.|.++.|+.+|++.+|++|+++.+++||.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4588999998999999999999999999999999999999999999999999999999999999999999999999996
No 153
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.2e-16 Score=93.67 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=63.1
Q ss_pred ceeeeeeecCCceE--EE-eeCCCchHHHHHHHHhh-hcCCCCCceeEEEC--CeecCCCCcccccccCCCCEEEE
Q 040824 76 GTMIKVKTLTGKEI--EI-DIEPTDTIERIKERVEE-KEGIPPVQQRLIYA--GKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~~~~~--~~-~v~~~~tv~~LK~~i~~-~~~i~~~~~~l~~~--g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
.|.|+|++..|+.+ .+ ++++++||.+||++|++ ..++|+++|+|+|. |+.|+|+.+|++|+|.+|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 38899999987664 58 99999999999999999 48999999999976 89999999999999999999765
No 154
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-16 Score=94.84 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=62.8
Q ss_pred CEEEEEeCCCCEE--EE-EEeCCCcHHHHHHHHHhH-hCCCCCCeEEEEc--ceEeccCceecccccccccceee
Q 040824 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~~~~~--~~-~v~~~~tv~~lk~~i~~~-~~~~~~~q~L~~~--g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
|+|+|+.+.|+.+ .+ ++++++||.+||++|++. .++||++|+|.|. |+.|+|+.+|++|++.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988664 58 999999999999999995 7999999999976 89999999999999999998765
No 155
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.5e-16 Score=95.69 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=65.7
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE-CCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~-~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+|.++++..+|+.+.+++++++||.+||++|++++|+||++|+|++ ++..++|+.+|++|+|++|++|++..+-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecCC
Confidence 4666666678999999999999999999999999999999999985 44448999999999999999999876543
No 156
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.62 E-value=2.4e-15 Score=93.90 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=71.8
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|.|.|+. +|+.+.+.+.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+++|++++||+|+++.+++||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3458899999 99999999999999999999999999999999999999999999999999999999999999999998
No 157
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.61 E-value=2.1e-15 Score=110.34 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+.++|+.+.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998764
No 158
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=2.8e-15 Score=92.46 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=60.7
Q ss_pred eeeeeeecCC--ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe---e----cCCCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK---Q----LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~--~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~---~----l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+.+.|+.... ..+.+++++++||++||++|+..+|+|++.|+|+|.|+ . ++|+++|++|+|++|++|++.-
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 4555555433 46889999999999999999999999999999999873 3 4899999999999999998864
No 159
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.60 E-value=2e-15 Score=113.31 Aligned_cols=79 Identities=35% Similarity=0.646 Sum_probs=72.3
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhh---hcCCCCCceeEEECCeecCCCCcccccccCCCCEE-EEEEeec
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE---KEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVL-HLVLALR 150 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~---~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i-~~~~~~~ 150 (154)
..|.|+|+..+|+.+.++|++++||.+||++|+. +.|+|+++|+|+|+|+.|+|+++|++|+|++|++| ++..+.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4589999999999999999999999999999999 67799999999999999999999999999999998 6777777
Q ss_pred CCC
Q 040824 151 GGG 153 (154)
Q Consensus 151 gg~ 153 (154)
||.
T Consensus 86 ~~~ 88 (368)
T 1oqy_A 86 AGQ 88 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 160
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.59 E-value=2.3e-15 Score=90.98 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=62.5
Q ss_pred EEEEEeC--CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-------cceEeccCceecccccccccceeeeee
Q 040824 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~--~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-------~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
.|.|.+. +.+.++.++++++||.+||++|+.++|+||+.|+|+| .|+.++|+.+|++|++.+|++||++-.
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4556543 3466789999999999999999999999999999996 478899999999999999999999865
Q ss_pred e
Q 040824 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 161
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.59 E-value=2.8e-15 Score=94.25 Aligned_cols=79 Identities=20% Similarity=0.417 Sum_probs=75.5
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...|.|.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|.|..|.++.|+++|++.+||+|+++..++||
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999999988
No 162
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.58 E-value=4.2e-15 Score=91.67 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=61.9
Q ss_pred EEEEEeCCC--CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc---eE----eccCceecccccccccceeeeee
Q 040824 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g---~~----L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
.|.|+..+. ..+++++++++||.+||++|+.++|+||+.|+|+|.| +. ++|+.+|++|++.++++|+++-.
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 577777554 4689999999999999999999999999999999987 33 58899999999999999988743
No 163
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.58 E-value=1.2e-14 Score=84.99 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=67.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
|.|.|+..+|+.+.+.+.+++++..|+.+++++.|+|++.++|+|.|+.|.++.|++++++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999999999999999999999999999999999999999999986
No 164
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.57 E-value=1.1e-14 Score=93.67 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=63.2
Q ss_pred CEEEEEeCCCC-EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc---eE----eccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~-~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g---~~----L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|.|+|+..++. .+.+++++++||.+||++|+.++|+|++.|+|.|.| +. ++|+.+|++||+.+|++||++..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 46778876553 588999999999999999999999999999999976 32 47889999999999999998864
Q ss_pred e
Q 040824 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 3
No 165
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=1.5e-14 Score=88.78 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++.+++++..|+++++++.+++++.++|+|+|+.|+++.|+++|++.++++|++.+...++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999887654
No 166
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.57 E-value=1.2e-14 Score=89.58 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=61.1
Q ss_pred eeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC---ee----cCCCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG---KQ----LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g---~~----l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+.+.|+..... .+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+.+|++|||.+|++|++.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 55666665443 688999999999999999999999999999999976 43 5899999999999999998864
No 167
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1.1e-14 Score=89.84 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=62.5
Q ss_pred CEEEEEeCCCC-EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc---eE----eccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~-~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g---~~----L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
+.|+|+..+.. .+.+++++++||.+||++|+.++|+|++.|+|+|.| +. ++|+.+|++|++.++++||+.-.
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 35778876553 688999999999999999999999999999999976 43 58999999999999999988753
No 168
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.55 E-value=4.2e-15 Score=93.56 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.3
Q ss_pred CEEEEEeCCCCEEEEEEe-CCCcHHHHHHHHHhHhCCCCCCeEEEEcce-----------E----eccCceecccccccc
Q 040824 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~-~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~-----------~----L~d~~~l~~~~i~~~ 64 (154)
|.|+|++.+|.. .++++ +++||.+||++|+.++++|++.|+|.+.|+ . ++|+.+|++|++++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999998865 78999 999999999999999999999999998877 3 588889999999999
Q ss_pred cceeeeeee
Q 040824 65 STLHLVLRL 73 (154)
Q Consensus 65 ~~i~l~~~~ 73 (154)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999988764
No 169
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.55 E-value=7.2e-15 Score=110.31 Aligned_cols=74 Identities=31% Similarity=0.566 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHh---HhCCCCCCeEEEEcceEeccCceecccccccccce-eeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~---~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i-~l~~~~~ 74 (154)
|+|+||..+|+.+.+++++++||.+||++|+. +.++++++|+|+|.|+.|+|+.+|++|+|+++++| +++.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999 56799999999999999999999999999999998 5555543
No 170
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.55 E-value=4e-16 Score=106.50 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|++++|+++.+++++++||.+||++|+...++|++.|+|+|+|+.|+|+.+|+ ++++|+|+++..++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 78999999987654
No 171
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.54 E-value=8.2e-15 Score=92.22 Aligned_cols=72 Identities=24% Similarity=0.410 Sum_probs=64.9
Q ss_pred ceeeeeeecCCceEEEeeC-CCchHHHHHHHHhhhcCCCCCceeEEECCe-----------e----cCCCCcccccccCC
Q 040824 76 GTMIKVKTLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGK-----------Q----LADDKTARDYNIEG 139 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~-~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~-----------~----l~d~~~L~~~~i~~ 139 (154)
.|.|+|+..+|.. .++++ +++||.+||++|++.+++|+++|+|.+.++ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 3889999998865 78999 999999999999999999999999998887 3 58999999999999
Q ss_pred CCEEEEEEe
Q 040824 140 GSVLHLVLA 148 (154)
Q Consensus 140 ~~~i~~~~~ 148 (154)
|++||+...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999988654
No 172
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.54 E-value=3.1e-14 Score=91.56 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=62.0
Q ss_pred ceeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC---e---e-cCCCCcccccccCCCCEEEEEE
Q 040824 76 GTMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG---K---Q-LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g---~---~-l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.+.|.|+...+. .+.+++++++||++||++|+..+|+|+++|+|+|.| + . ++|+.+|++|||.+|++||+..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 356667765443 688999999999999999999999999999999977 3 2 4799999999999999999875
No 173
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.53 E-value=7.4e-14 Score=83.08 Aligned_cols=72 Identities=17% Similarity=0.373 Sum_probs=68.3
Q ss_pred cceeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 75 GGTMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
..|.|.|+..+|+ .+.+.+.+++++..|+.+++++.|++++.++|+|.|..|.++.|++++++++||+|+++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4578999999996 89999999999999999999999999999999999999999999999999999999986
No 174
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=7e-14 Score=85.19 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=71.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++.+++++..|+++++++.|++++.++|+|+|+.|+++.|+++|++.++++|++.+...++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999876544
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.52 E-value=8e-14 Score=81.53 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|+..+|+.+.+++.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6799999999999999999999999999999999999999999999999999999999999999999875
No 176
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.50 E-value=4.2e-14 Score=85.58 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=61.5
Q ss_pred eeeeeeecCCceEEEe-eCCCchHHHHHHHHhhhcCCCCCceeEEEC--CeecC---CCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYA--GKQLA---DDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~-v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~--g~~l~---d~~~L~~~~i~~~~~i~~~~ 147 (154)
|.|+|+..+|+. .+. +++++||.+||+.|++.+|+|+++|+|+|. ++.++ ++.+|++|||.+|++|++..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 678999999865 477 999999999999999999999999999976 47764 78899999999999998754
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.48 E-value=2.2e-13 Score=83.39 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++..++++..|+++++++.+++++.++|+|+|+.|.++.|+++|++.++++|++.+...+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 578899889999999999999999999999999999999999999999999999999999999999999887543
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.48 E-value=4.3e-14 Score=85.54 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=62.8
Q ss_pred CEEEEEeCCCCEEEEE-EeCCCcHHHHHHHHHhHhCCCCCCeEEEEc--ceEec---cCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~-v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~--g~~L~---d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|+|+|+..+|+. .++ +++++||.+||++|++++++++++|+|.|+ ++.+. ++.+|++||+.+|++|++...
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 889999999964 477 999999999999999999999999999986 47764 678999999999999987754
No 179
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.46 E-value=9.6e-14 Score=102.70 Aligned_cols=72 Identities=28% Similarity=0.451 Sum_probs=64.9
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE---ECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI---YAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~---~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.+.++|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+ |+|+.++|+.+|++|+|++|++|+++..
T Consensus 5 ~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 5 EVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 46788887 788999999999999999999999999999999999 8999999999999999999999988743
No 180
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.45 E-value=7.5e-14 Score=103.27 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=66.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE---EcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+. +|+.+.+++++++||++||++|++.+|+||++|+|+ |.|+.|+|+.+|++|+|++|++|+++-+...
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 5788995 789999999999999999999999999999999999 8999999999999999999999999877654
No 181
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=9e-13 Score=83.04 Aligned_cols=77 Identities=22% Similarity=0.435 Sum_probs=72.5
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
..+.|.|+..+|+.+.|.+.+++++..|+..++++.|+++..++++|.|..|.++.|++++++++||+|+++..+.|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34788888888999999999999999999999999999999999999999999999999999999999999998865
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.44 E-value=5.8e-13 Score=79.16 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.5
Q ss_pred CEEEEEeCCCC-EEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~-~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|+|+|+..+|+ .+.+++.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999995 89999999999999999999999999999999999999999999999999999999874
No 183
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=3.5e-13 Score=83.97 Aligned_cols=75 Identities=15% Similarity=0.352 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.++|..++++..|+++++++.+++++.++|+|+|+.|.++.|+.+|++.++++|++.+...+
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999887654
No 184
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.42 E-value=3.1e-13 Score=84.95 Aligned_cols=77 Identities=16% Similarity=0.410 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecce
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (154)
|+|+|+..+|+.+.+++.+++++..|+++++++.+++++.++|+|+|+.|.++.|+++|++.++++|++.+...+++
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998876654
No 185
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.41 E-value=1e-12 Score=81.96 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+. +|+...+++..++++..|+++++++.+++++.++|+|+|+.|.++.|+++|++.++++|++.+...+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 5788998 8999999999999999999999999999999999999999999999999999999999999887543
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.38 E-value=2.9e-12 Score=79.14 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=61.8
Q ss_pred eeeeeee---cCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC-------eec-CCCCcccccccCCCCEEEE
Q 040824 77 TMIKVKT---LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG-------KQL-ADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~---~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g-------~~l-~d~~~L~~~~i~~~~~i~~ 145 (154)
+.|.|+. .++..+...+++++||++||.+|++.+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|+|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4455554 3677889999999999999999999999999999999763 124 6889999999999999999
Q ss_pred EEeec
Q 040824 146 VLALR 150 (154)
Q Consensus 146 ~~~~~ 150 (154)
....+
T Consensus 90 ~d~~p 94 (97)
T 1wjn_A 90 RWSGP 94 (97)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 87543
No 187
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.8e-12 Score=87.78 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=73.7
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
...+.|.|+. +|+.+.|.|.+++++..|+..++++.|+++..++++|+|..|.++.|++++++.+||+|+++..+.||.
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 3447778864 888999999999999999999999999999999999999999999999999999999999999999984
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=5e-12 Score=87.09 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=73.4
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..-++|.|+. +|+.+.|.+.+++++..|+..++++.|+++..++++|.|+.+.++.|++++++.+||+|+++..+.||.
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 3446777864 888999999999999999999999999999999999999999999999999999999999999999983
No 189
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.33 E-value=6.7e-12 Score=77.48 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=60.4
Q ss_pred EEEEEe---CCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc-------eEe-ccCceecccccccccceeee
Q 040824 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~---~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g-------~~L-~d~~~l~~~~i~~~~~i~l~ 70 (154)
+|+|+. .+++.+..++++++||++||.+|+..+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|++.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 3677899999999999999999999999999999999862 225 56779999999999999887
Q ss_pred ee
Q 040824 71 LR 72 (154)
Q Consensus 71 ~~ 72 (154)
..
T Consensus 91 d~ 92 (97)
T 1wjn_A 91 WS 92 (97)
T ss_dssp CC
T ss_pred ec
Confidence 64
No 190
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.24 E-value=7e-13 Score=90.94 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=1.4
Q ss_pred eeeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 70 VLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 70 ~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
...+...|.|.| ..+|+.+.|.+.+++++..|++.++++.|+++..++++|+|..+.++.|++++++++||+|+++..+
T Consensus 15 ~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 15 EVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 344455678888 6688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 040824 150 RGGG 153 (154)
Q Consensus 150 ~gg~ 153 (154)
.||.
T Consensus 94 ~GG~ 97 (227)
T 3v7o_A 94 IGGL 97 (227)
T ss_dssp --CC
T ss_pred cCCc
Confidence 9995
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=7.9e-11 Score=74.17 Aligned_cols=73 Identities=16% Similarity=0.408 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|....+.|..++++..|+..+.++.|++++.++++|+|+.|+++.|..++++.++++|.+....
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 4688888889999999999999999999999999999999999999999999999999999999999987653
No 192
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.18 E-value=3.3e-10 Score=65.39 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=64.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC-ceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~-~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+.+.++......+.+.++++.+|.+|.+..+.+.++|++ ..+|.|.|..|+.+.++.+|++.+||.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 345556666677999999999999999999999999999 89999999999999999999999999999875
No 193
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.13 E-value=6.6e-10 Score=64.15 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.5
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEEcceEeccCceecccccccccceeeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
.+.++......+.+++.++++|.+|......+.+++++ ..+|.|.|..|+++.++.+|++.+++.|.+.+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45667776778999999999999999999999999999 99999999999999999999999999998765
No 194
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.9e-09 Score=74.22 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+. +|+...+.|..++++..|+..+.++.|++++.++++|+|+.|.++.|..++++.++++|++.....+
T Consensus 30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 4678874 8899999999999999999999999999999999999999999999999999999999999988654
No 195
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-09 Score=66.92 Aligned_cols=72 Identities=14% Similarity=0.344 Sum_probs=66.8
Q ss_pred cceeeeeeecCCc-eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEE
Q 040824 75 GGTMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~~~-~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
..+.|.|+..+++ .+.+.+..++++..|....+++.|+++...+++|.|..+..+.|..++++++||+|.++
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4477888888885 78999999999999999999999999999999999999999999999999999999885
No 196
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.02 E-value=8.7e-10 Score=74.75 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+. +|....+.|..++++..|+..+.++.+++++.++++|+|+.|+++.|..++++.++++|++.+...++
T Consensus 58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 4678864 88999999999999999999999999999999999999999999999999999999999999987765
No 197
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.00 E-value=4.5e-10 Score=66.68 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=58.3
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCee---c--CCCCcccccccCCCCEEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ---L--ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~---l--~d~~~L~~~~i~~~~~i~~~ 146 (154)
.|.|.++..+| ++.+++++++|+.+|+++|++.++++++.+.+.+...+ + ..+.+|+++|+++||+|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47888999887 67788999999999999999999999888877644332 3 37789999999999999864
No 198
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.00 E-value=1.6e-09 Score=75.65 Aligned_cols=83 Identities=22% Similarity=0.357 Sum_probs=73.8
Q ss_pred eeeeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 69 LVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 69 l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
..+.+...+.|.|+. +++.+.|.+..++++..|+..+|++.|+++..++++|.|..+.++.|..++.+.++|+|.++..
T Consensus 14 ~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 14 PEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp ----CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred ceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 344455567788877 7778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 040824 149 LRGG 152 (154)
Q Consensus 149 ~~gg 152 (154)
+.||
T Consensus 93 q~Gg 96 (209)
T 3uf8_A 93 QIGG 96 (209)
T ss_dssp CTTC
T ss_pred cccc
Confidence 9987
No 199
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.96 E-value=8.7e-08 Score=72.30 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=112.6
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhC----CCCCCeEEEE------cceEeccCceecccccccccceeeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~----~~~~~q~L~~------~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
.++|... +-+..+.+++++||.+....|.++.. .+.++--|+. .|++|.+..+|..|++.+++.+....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 4566655 67788999999999999999988874 3567777877 46889999999999999999886554
Q ss_pred eeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCC-CCceeEEECC---------eecCCCCcccccccCCCC
Q 040824 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIYAG---------KQLADDKTARDYNIEGGS 141 (154)
Q Consensus 72 ~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~-~~~~~l~~~g---------~~l~d~~~L~~~~i~~~~ 141 (154)
+ .+.+.|..++|+...+.+++++|+.++-..++...|+. .+.+-|.+.. ..|+.++++.+.+.....
T Consensus 84 ~---~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 160 (371)
T 3ivf_A 84 K---QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE 160 (371)
T ss_dssp C---EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred c---eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence 4 46888999999999999999999999999999999974 4455665431 356667788887776666
Q ss_pred EEEEEEe
Q 040824 142 VLHLVLA 148 (154)
Q Consensus 142 ~i~~~~~ 148 (154)
.+++.++
T Consensus 161 ~l~frvK 167 (371)
T 3ivf_A 161 TLLLRRK 167 (371)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 7665544
No 200
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.94 E-value=7.5e-09 Score=62.43 Aligned_cols=71 Identities=11% Similarity=0.324 Sum_probs=66.4
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.+.|.|+. +|....|.+..++....|....|++.|+++...+++|.|..+.++.|..++++++||+|.+++
T Consensus 21 ~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 21 LFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred eEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 37778885 688899999999999999999999999999999999999999999999999999999999875
No 201
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.90 E-value=1.5e-10 Score=86.16 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=0.0
Q ss_pred eeeecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeec
Q 040824 71 LRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 71 ~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
..+...+.|.|+. +|+...+.+..++++..|++.++++.|++++.++++|+|..+.++.|.+++++++||+|+++..+.
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 3344557788877 677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 040824 151 GG 152 (154)
Q Consensus 151 gg 152 (154)
||
T Consensus 95 g~ 96 (360)
T 3ix6_A 95 GG 96 (360)
T ss_dssp --
T ss_pred ch
Confidence 98
No 202
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.83 E-value=1.7e-09 Score=64.17 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=57.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceE---e--ccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~---L--~d~~~l~~~~i~~~~~i~l~ 70 (154)
|.|+|++.+| .+.+++++++|+.+|+++|.+.++++++.|.+++.... | .++.+|+++|+++|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 5688998876 57888999999999999999999999988888754322 3 36779999999999999764
No 203
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-08 Score=60.88 Aligned_cols=70 Identities=13% Similarity=0.300 Sum_probs=64.3
Q ss_pred CEEEEEeCCC-CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
+.|+|+..+| +.+.+.+..++++..|...+.++.+++++..+++|+|..+.++.|..++++.++++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4677888888 478999999999999999999999999999999999999999999999999999999763
No 204
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.81 E-value=4.4e-10 Score=77.18 Aligned_cols=76 Identities=13% Similarity=0.318 Sum_probs=0.9
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecce
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (154)
|+|+| ..+|+...++|..++++..|++.+.++.|++++.+++.|+|+.++++.|.+++++.++++|++.....++.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ---------------------------------------------------------------------------CC
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 56778 66888899999999999999999999999999999999999999999999999999999999998876653
No 205
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.70 E-value=1.7e-09 Score=82.15 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
..+.|.|+. +++...|.+..++++..|++.++++.|+++..++++|+|+.+.++.|.+++++++|++|.++..+.||.
T Consensus 29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 346677776 677888999999999999999999999999999999999999999999999999999999999999983
No 206
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.69 E-value=8.5e-08 Score=57.83 Aligned_cols=72 Identities=14% Similarity=0.280 Sum_probs=66.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
+.|+|+ .+|....+.+..++....|.+.+.++.|++++..+++|+|..++++.|..+.++.++++|.+....
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 467888 478889999999999999999999999999999999999999999999999999999999887643
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.66 E-value=1.8e-07 Score=55.94 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=68.6
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
..+|.+.|-..+++...+.+.++.++.++-+..++++|+++++..|.|+++.++-+.++.-.|+.+|+.+++....
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 3467888888899999999999999999999999999999999999999999999999999999999999987543
No 208
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.46 E-value=1.8e-08 Score=75.02 Aligned_cols=76 Identities=13% Similarity=0.332 Sum_probs=0.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecce
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~ 77 (154)
++|+|+. +|+...+++..++++..|++++.++.|++++.+++.|+|+.+.++.|.+++++.+|++|++.....++|
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 4577776 567788999999999999999999999999999999999999999999999999999999998876654
No 209
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.44 E-value=2e-06 Score=59.89 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeec
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~ 75 (154)
+.|+|+. +++...+++..++++..|+++++++.|++++.++++|+|+.+.++.+..+.++.+++.|.+.....+
T Consensus 22 i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 3577776 6778899999999999999999999999999999999999999999999999999999998877654
No 210
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.43 E-value=1.4e-06 Score=52.75 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=50.4
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeec--CCCCccccccc-CCCCEEEEEEe
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQL--ADDKTARDYNI-EGGSVLHLVLA 148 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l--~d~~~L~~~~i-~~~~~i~~~~~ 148 (154)
.+..+.+.+.+++|+..+|++|++++|+|+++|+|+|.|+.+ +.+..-..|.- ....-|.++.+
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 567789999999999999999999999999999999999754 45555555543 44455655544
No 211
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.41 E-value=2.3e-06 Score=51.78 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=46.4
Q ss_pred EEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEec--cCceeccccc
Q 040824 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI 61 (154)
Q Consensus 3 v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~--d~~~l~~~~i 61 (154)
|+|-.. .+..+.+.+.+++|+..+|++|++++|+|++.|+|+|.|+.+. ++.....|.-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 344333 4567889999999999999999999999999999999996654 4445555553
No 212
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.28 E-value=3.7e-06 Score=50.23 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|.|.|-..+++...+.+.+++++.++-+...++++++++.-.|.|+++.|+-...+..-|+.+++.+.++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 5788998999999999999999999999999999999999999999999999999999999999999887654
No 213
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.24 E-value=1.7e-06 Score=55.30 Aligned_cols=70 Identities=21% Similarity=0.269 Sum_probs=56.8
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC-------------------------------------ceeEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-------------------------------------QQRLI 120 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~-------------------------------------~~~l~ 120 (154)
.+.|+.++|+...+.|+.+.+|.+++..||.+.|++.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58889999999999999999999999999999998643 22221
Q ss_pred E--CCeecCCCCcccccccCCCCEEEEEE
Q 040824 121 Y--AGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 121 ~--~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
. .+..|+++.||.++||..++++.+--
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 1 12577889999999999999975543
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.24 E-value=2.7e-06 Score=54.34 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=58.8
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-------------------------------------CeEEE
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 44 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-------------------------------------~q~L~ 44 (154)
.++|+.++|...++.|+.+.+|++++..|.++.|++.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 48899999999999999999999999999999998854 34443
Q ss_pred E--cceEeccCceecccccccccceeeee
Q 040824 45 F--AGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 45 ~--~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
. ...+|++..+|.++|+.+++++.|-.
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRR 121 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEE
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEE
Confidence 2 23788999999999999999875544
No 215
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.19 E-value=5.7e-06 Score=48.68 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=56.3
Q ss_pred CEEEEEe--CCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-----CeEEEEcceEeccCceecccccccccceee
Q 040824 1 MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~--~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-----~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l 69 (154)
+.|++.. ..++.+.++++...|+.+|++.+.+..+++.. ..+..-.+..|.++..|++|++.+|+.+.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 3566664 67899999999999999999999999886642 233335678999999999999999998854
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.15 E-value=2.6e-07 Score=70.12 Aligned_cols=74 Identities=12% Similarity=0.324 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~ 76 (154)
.|+|+. ++....+++..++++..|+..+.++.+++++.+++.|+|+.+.++.|..++++.++++|.+.....++
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 466665 66778899999999999999999999999999999999999999999999999999999999876544
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.14 E-value=6.9e-06 Score=48.32 Aligned_cols=62 Identities=11% Similarity=0.256 Sum_probs=53.0
Q ss_pred cCCceEEEeeCCCchHHHHHHHHhhhcCCCCC-----ceeEEECCeecCCCCcccccccCCCCEEEE
Q 040824 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-----QQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 84 ~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~-----~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
-.++.+.++++...|+.+|...+.+.++++.. ..++.-++..|.++.+|++|++.+||.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 36889999999999999999999999997542 234446788999999999999999999976
No 218
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=98.08 E-value=2.4e-05 Score=46.50 Aligned_cols=69 Identities=14% Similarity=0.307 Sum_probs=58.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeec---CCCCcccccccCCCCEEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQL---ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~ 146 (154)
..|.|+.++|+.+.-.+..++|+.+|..-+.. .+.++..+.|. |..+.+ +.+.||.+.|+.++++|.|-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 56788889999888889999999999999987 57788888888 566777 45789999999999998764
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.84 E-value=0.00013 Score=43.23 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=57.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEec---cCceecccccccccceeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~ 70 (154)
+|.|+..+|+.+.-....++||.+|.+.|.. .+.++....|. |..+.+. .+.+|.+.|+.+.+++.+-
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5789999999999999999999999999987 56677777887 5578774 4679999999999888654
No 220
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.75 E-value=0.00023 Score=44.36 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=60.7
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC---CCCcccccccCCCCEEEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~---d~~~L~~~~i~~~~~i~~~~ 147 (154)
...|.|+.++|+.+.-.++.++|+.+|..-+....+.+...+.|+ |.-+.+. .++||.+.|+.+.+++.+.-
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 357888899999999999999999999999998888777788887 5667775 47899999999998886653
No 221
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.74 E-value=0.00014 Score=46.35 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=60.2
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeec---CCCCcccccccCCCCEEEEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQL---ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l---~d~~~L~~~~i~~~~~i~~~ 146 (154)
+...|.|+.++|..+.-.+..++|+.+|..-|... +.++..+.|+ |..+.+ +.+.||.+.|+.+.+.|.|.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 44678889999999899999999999999999887 7788888887 667777 34789999999998887664
No 222
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.51 E-value=0.00078 Score=41.88 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=59.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEec--c-Cceecccccccccceeeeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~--d-~~~l~~~~i~~~~~i~l~~~ 72 (154)
+|.|+..+|..+.-+.+.++||.+|.+.|....+.+...-.|. |..+.+. | +.+|.+.|+.+.+.+.+...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 5789999999999999999999999999998877766666676 5677776 3 56999999999888866543
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.45 E-value=0.00088 Score=42.62 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=56.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEe--cc-Cceecccccccccceeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L--~d-~~~l~~~~i~~~~~i~l~ 70 (154)
+|.|+..+|..+.-++..++||.+|.+.|... +.++..-.|. |..+.+ .| +.+|.+.++.+.+.+.+.
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 58899999999999999999999999999876 6666677776 668888 33 679999999988887654
No 224
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.29 E-value=0.0013 Score=40.91 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=57.4
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE--ECCeecC--CCCcccccccCCCCEEEEE
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA--DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~--~~g~~l~--d~~~L~~~~i~~~~~i~~~ 146 (154)
...|.|+..+|+.+.-.+..++|+.+|..-+... +..+..+.|+ |..+.+. .+.||.+.|+.+.++|.|-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 3578888889998888899999999999999865 5566778887 5666665 5789999999999998664
No 225
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.17 E-value=0.002 Score=50.75 Aligned_cols=135 Identities=14% Similarity=0.239 Sum_probs=90.1
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-----c--eE-e-c----cCceeccccc-ccccceeeeeee-----
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-----G--KQ-L-E----DGRTLADYNI-QKESTLHLVLRL----- 73 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-----g--~~-L-~----d~~~l~~~~i-~~~~~i~l~~~~----- 73 (154)
..+++..++|+.+|++.+.+.+|+++++|+|+.- + +. + . .+.++.++.- .+.-++++-...
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~ 117 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAA 117 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHT
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCC
Confidence 4689999999999999999999999999999832 1 11 1 1 0112222211 111233332210
Q ss_pred ----------ecceeeeeeecC--CceE----EEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC----C--eecC-CCC
Q 040824 74 ----------RGGTMIKVKTLT--GKEI----EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA----G--KQLA-DDK 130 (154)
Q Consensus 74 ----------~~~~~i~v~~~~--~~~~----~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~----g--~~l~-d~~ 130 (154)
...+.|++|.-+ .+.+ .+.++.+.+|++|-..+.+..|+|++.--.+|. + ..|+ .+.
T Consensus 118 ~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~ 197 (530)
T 2ylm_A 118 SGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDV 197 (530)
T ss_dssp TTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSS
T ss_pred ccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccc
Confidence 112566776643 2332 366899999999999999999999877655554 2 3566 678
Q ss_pred ccccc--ccCCCCEEEEEE
Q 040824 131 TARDY--NIEGGSVLHLVL 147 (154)
Q Consensus 131 ~L~~~--~i~~~~~i~~~~ 147 (154)
|+.+. .+.+|+.|-+-.
T Consensus 198 t~~~~~~eL~~GdII~fQ~ 216 (530)
T 2ylm_A 198 SLDKALDELMDGDIIVFQK 216 (530)
T ss_dssp BHHHHSTTCCTTEEEEEEE
T ss_pred cHHHHHhcccCCCEEEEEe
Confidence 99999 999999986543
No 226
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.0016 Score=38.13 Aligned_cols=64 Identities=11% Similarity=0.214 Sum_probs=54.6
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE---CCeecCCCCcccccccCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY---AGKQLADDKTARDYNIEG 139 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~---~g~~l~d~~~L~~~~i~~ 139 (154)
..++.|.....+..-++|+|..++.+|--.||+++.++|++..|.. .+.+|+-+++|.+|||..
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3455566666778889999999999999999999999999999984 456899999999999965
No 227
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.12 E-value=0.0088 Score=33.91 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=49.4
Q ss_pred ceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.|++++....+ ...++++...|+.+|.+.+ ++++....+..+|..+..+. -+++||.|.++-..-||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 36777766432 3456777889999998876 56677777779999887554 68999999887766655
No 228
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.06 E-value=0.0062 Score=47.98 Aligned_cols=119 Identities=12% Similarity=0.193 Sum_probs=77.1
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCCC---CCCeEEE--Ecc---eEeccCceecccccccccceeeeeeeec--------
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLRG-------- 75 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~~---~~~q~L~--~~g---~~L~d~~~l~~~~i~~~~~i~l~~~~~~-------- 75 (154)
.+.+-++.+.||++|.+.+.++.+++ ....+++ +++ +.+.++.+++..+-.....+.+-.-+..
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~ 432 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKEN 432 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCC
Confidence 46677888999999999999999887 3556664 566 4466777776544211333333222211
Q ss_pred ceeeeeeec-------CCceEEEeeCCCchHHHHHHHHhhhcCCCCC---ceeE--EECC--eecCCCC
Q 040824 76 GTMIKVKTL-------TGKEIEIDIEPTDTIERIKERVEEKEGIPPV---QQRL--IYAG--KQLADDK 130 (154)
Q Consensus 76 ~~~i~v~~~-------~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~---~~~l--~~~g--~~l~d~~ 130 (154)
.+.|.|... .|..+.+.+.+.+|+.++|+.|++++|++.. ..++ +-.+ ..++|+.
T Consensus 433 ~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d 501 (530)
T 2ylm_A 433 EMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDE 501 (530)
T ss_dssp EEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTT
T ss_pred cEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCcc
Confidence 122333221 3677889999999999999999999999744 3443 3334 3466544
No 229
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.04 E-value=0.0026 Score=40.61 Aligned_cols=69 Identities=16% Similarity=0.316 Sum_probs=56.2
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhc-CCCCCceeEE--ECCeecC-CCCcccccccCCCCEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKE-GIPPVQQRLI--YAGKQLA-DDKTARDYNIEGGSVL 143 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~-~i~~~~~~l~--~~g~~l~-d~~~L~~~~i~~~~~i 143 (154)
+...|.|+..+|+.+.-.++.++||.+|..-|.... +.+...+.|+ |..+.++ ++.||.+.|+.+.+.+
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 346788999999999999999999999999998864 3556677777 6677786 4689999999886554
No 230
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.86 E-value=0.01 Score=44.51 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=52.3
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcC----CCCCceeEEE------CCeecCCCCcccccccCCCCEEEEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEG----IPPVQQRLIY------AGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~----i~~~~~~l~~------~g~~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
+.+-.+.+++++||.+....|.++.. .++++.-|.+ +|..|++.+||..|++.+|+.++..
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 55678999999999999999988885 3688888887 4567898999999999999998765
No 231
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.78 E-value=0.0058 Score=35.16 Aligned_cols=66 Identities=14% Similarity=0.297 Sum_probs=47.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
|+++|+........+++++..|+++|-+ ..++|++..-+..+|+.+..+. +.+||.|.++ ++.||+
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv-~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL-RLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEEC-SSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEE-Eeeccc
Confidence 4566666533445688999999999854 7799999998888999887555 3358999665 444444
No 232
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.77 E-value=0.0065 Score=37.65 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=55.2
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE--EcceEec--cCceecccccccccceeeee
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~--~~g~~L~--d~~~l~~~~i~~~~~i~l~~ 71 (154)
+|.|+..+|+.+.-+...++||.+|..-|... +..+..-.|. |..+.+. .+.+|.+.|+.+.+++.+..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 58899999999999999999999999999855 4455556665 5677775 36799999999888886543
No 233
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.56 E-value=0.007 Score=38.59 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=52.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHh-CCCCCCeEEE--EcceEecc-Cceecccccccccce
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~-~~~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~~i 67 (154)
+|.|+..+|..+.-+++.++||.+|.+.|.... +.....-.|. |..+.+.| +.+|.+.|+.+.+.+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 578999999999999999999999999998864 3445556666 56788875 579999999875543
No 234
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.51 E-value=0.0048 Score=36.10 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=53.7
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc---ceEeccCceeccccccc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 63 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~---g~~L~d~~~l~~~~i~~ 63 (154)
++.|....-+...+++++..++++|--.|.++-.+.|+.-.|... +..|+-+++|.+|||+.
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 466676666778899999999999999999999999999988843 57799999999999984
No 235
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.47 E-value=0.025 Score=34.97 Aligned_cols=62 Identities=39% Similarity=0.503 Sum_probs=43.7
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHh--CCC------CCCeEEEEc----ceEeccCc-------------eecccccccc
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDGR-------------TLADYNIQKE 64 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~--~~~------~~~q~L~~~----g~~L~d~~-------------~l~~~~i~~~ 64 (154)
++.+++.+-.-+||.++|++|-... |.| ++...|-+. |+.|.|.. ||++|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 3558889999999999999997663 444 345556552 45666522 5899999999
Q ss_pred cceeeee
Q 040824 65 STLHLVL 71 (154)
Q Consensus 65 ~~i~l~~ 71 (154)
+++.++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9987654
No 236
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.40 E-value=0.011 Score=41.13 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=52.1
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCC-ceeEE--E-CC--eecCC-CCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLI--Y-AG--KQLAD-DKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~-~~~l~--~-~g--~~l~d-~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.+.+.++..+|+.+|++.+++.++++++ ..||- + .+ ..|++ +.||.++++.++..|.+-++-..|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567889999999999999999999987 67775 2 22 35555 579999999999999887776555
No 237
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.34 E-value=0.024 Score=39.78 Aligned_cols=65 Identities=26% Similarity=0.324 Sum_probs=52.5
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCC-ceeEEE-C----CeecCC-CCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIY-A----GKQLAD-DKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~-~~~l~~-~----g~~l~d-~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.+.+.++..+|+.+|++.++..++++++ ..||-. . ...|.+ +.||.++++.++..|.+=++-..|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3557789999999999999999999997 688863 3 235664 589999999999999887775544
No 238
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.24 E-value=0.069 Score=32.17 Aligned_cols=73 Identities=21% Similarity=0.419 Sum_probs=47.8
Q ss_pred cceeeeeeecC------C-ceEEEeeCCCchHHHHHHHHhhhcC-C----------CCCceeEEECCeecCCCCcccccc
Q 040824 75 GGTMIKVKTLT------G-KEIEIDIEPTDTIERIKERVEEKEG-I----------PPVQQRLIYAGKQLADDKTARDYN 136 (154)
Q Consensus 75 ~~~~i~v~~~~------~-~~~~~~v~~~~tv~~LK~~i~~~~~-i----------~~~~~~l~~~g~~l~d~~~L~~~~ 136 (154)
+.|.++|+... | ....++++...||.+|.+.+...+. + ......+..+|+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 34555555532 2 3556788788999999999987652 1 1244567788887753 567
Q ss_pred cCCCCEEEEEEeecCC
Q 040824 137 IEGGSVLHLVLALRGG 152 (154)
Q Consensus 137 i~~~~~i~~~~~~~gg 152 (154)
+++||.|.++-..-||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999887666554
No 239
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=96.19 E-value=0.036 Score=32.31 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=53.0
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
+.-.++-++++..||+.++++.+++.+...+...+..|+++++|-+.+++-...+.+.+-.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445666788999999999999999999999888888999999999999888888877654
No 240
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.17 E-value=0.036 Score=35.55 Aligned_cols=63 Identities=29% Similarity=0.560 Sum_probs=45.0
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhc--CCC------CCceeEEE----CCe-ecCCC-------------CcccccccCCC
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIY----AGK-QLADD-------------KTARDYNIEGG 140 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~--~i~------~~~~~l~~----~g~-~l~d~-------------~~L~~~~i~~~ 140 (154)
..+++.|-.++||.++|++|-... |.| ++.+-|-| .|+ .|.|. .||+.|++.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 568899999999999999995444 344 34456655 233 24432 28999999999
Q ss_pred CEEEEEEee
Q 040824 141 SVLHLVLAL 149 (154)
Q Consensus 141 ~~i~~~~~~ 149 (154)
+++.++-+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999887654
No 241
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.05 E-value=0.022 Score=33.40 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=39.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g 47 (154)
|.|+|... .++.++++.+.+..+|.++|.++.+++++...|.|..
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 35667765 6899999999999999999999999999999998864
No 242
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=95.87 E-value=0.045 Score=32.40 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=46.2
Q ss_pred ceeeeeeecCCceEEEeeCCC-chHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 76 GTMIKVKTLTGKEIEIDIEPT-DTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~~~~~~~~v~~~-~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.|.|++ +|+. ++++.. .|+.+|.+.+ ++++....+..+|..+..+ ...+.-+++||.|.++-...||
T Consensus 20 ~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 20 RHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp --CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred ceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 355544 5554 456676 8999998866 5677777788999887643 3445679999999888766655
No 243
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.85 E-value=0.073 Score=32.90 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=43.0
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhc--CCC------CCceeEEEC----CeecCC-------------CCcccccccCCC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GKQLAD-------------DKTARDYNIEGG 140 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~--~i~------~~~~~l~~~----g~~l~d-------------~~~L~~~~i~~~ 140 (154)
+..+++.+-.++||.++|++|-... |.| ++.+.|-|. |+.|.| =.||+.|++.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568889999999999999994433 343 355666663 334433 137999999999
Q ss_pred CEEEEEE
Q 040824 141 SVLHLVL 147 (154)
Q Consensus 141 ~~i~~~~ 147 (154)
+++.+.-
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9997653
No 244
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=95.84 E-value=0.019 Score=33.25 Aligned_cols=64 Identities=13% Similarity=0.254 Sum_probs=46.5
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCC-CCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~-~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
+|+.+.+......|+.+|.+.+ +++ +...-+..+|..+..+ ...+.-+++||.|.++-...||.
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCC
Confidence 5664443221678999997754 677 7777888999988653 45567889999999888777774
No 245
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.83 E-value=0.044 Score=31.39 Aligned_cols=62 Identities=11% Similarity=0.273 Sum_probs=46.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|+|+|+--+.....++++++.|+.+|-+. .+++++.-....||+.+..+. +.+|+.+.+..-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~ 62 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRL 62 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEe
Confidence 89999987545566899999999998755 789988887778888776555 223777765543
No 246
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.80 E-value=0.057 Score=30.73 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=40.6
Q ss_pred EeeCCCchHHHHHHHHhhhcCCCC--CceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 91 IDIEPTDTIERIKERVEEKEGIPP--VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~i~~--~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+++ ...|+.+|.+.+....++.. ....+..+|+.+.+ .+.-+++||.|.++-..-||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 455 56799999999987544322 45666778877432 34568999999888777766
No 247
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.72 E-value=0.073 Score=34.12 Aligned_cols=63 Identities=32% Similarity=0.533 Sum_probs=45.6
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHh--CCC------CCCeEEEE-c---ce-EeccC-------------ceecccccccc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~--~~~------~~~q~L~~-~---g~-~L~d~-------------~~l~~~~i~~~ 64 (154)
+.+++.+-.-+||.++|++|-+.. +.| +++..|-+ . |+ .|.|. .||+.|++.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 458899999999999999998664 444 33445544 2 33 36654 27999999999
Q ss_pred cceeeeeee
Q 040824 65 STLHLVLRL 73 (154)
Q Consensus 65 ~~i~l~~~~ 73 (154)
+++.++.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999887654
No 248
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.48 E-value=0.067 Score=37.52 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=49.4
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEE-c----ceEecc-Cceecccccccccceeeeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~-~----g~~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (154)
+...++..+|+.+|++++.+.++++++ ..+|+. . ...|.+ +.+|.++++.++..|.+-.+.
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 456779999999999999999999997 688874 3 255665 579999999999988666554
No 249
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.46 E-value=0.057 Score=31.64 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=39.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~ 124 (154)
+.|.|+.. -++.+.+++..+..+|..+|+++.+++++..+|.|+..
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 55666664 58889999999999999999999999999999999763
No 250
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.39 E-value=0.04 Score=31.48 Aligned_cols=60 Identities=7% Similarity=0.180 Sum_probs=44.9
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+.+ ++ +..|+.+|.+ ..++++...-+..+|..+..+ ...+.-+++||.|.++-...||
T Consensus 6 NG~~~--e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQR--EV-QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEE--CC-CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEE--Ec-CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 55544 44 5689999866 457888888888999887543 3556688999999988777776
No 251
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=95.39 E-value=0.12 Score=30.29 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=45.2
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhcC-C-----CC-----CceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKEG-I-----PP-----VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~~-i-----~~-----~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
....++++...||.+|.+.+...+. + .. ....+..+|+.... +.-+++||.|.++-..-||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567788888899999999988763 1 10 23577788887764 4568999999888777666
No 252
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.36 E-value=0.058 Score=37.48 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=49.2
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEE-c--c--eEecc-Cceecccccccccceeeeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G--KQLED-GRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~-~--g--~~L~d-~~~l~~~~i~~~~~i~l~~~~ 73 (154)
..+.++..+|+.+|++++.+.++++++ ..+|+. . + ..|.+ +.+|.++++.++..|.+-.+.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 567789999999999999999999987 688873 2 2 45666 569999999999988666554
No 253
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.29 E-value=0.26 Score=31.11 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=45.2
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhc--CCC------CCceeEEEC-C---ee-cCC-------------CCcccccccC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA-G---KQ-LAD-------------DKTARDYNIE 138 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~--~i~------~~~~~l~~~-g---~~-l~d-------------~~~L~~~~i~ 138 (154)
++..+++.+-.++||.++|++|-... +.| ++.+.|-|. | .. |.| =.||+.|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 44568889999999999999995433 344 456667662 2 22 432 1379999999
Q ss_pred CCCEEEEEEe
Q 040824 139 GGSVLHLVLA 148 (154)
Q Consensus 139 ~~~~i~~~~~ 148 (154)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999987643
No 254
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.28 E-value=0.067 Score=30.81 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=42.2
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcC-----CCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEG-----IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~-----i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...++ ....|+.+|.+.+...+. ++.....+..+|+.... +.-+++||.|.++-..-||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34555 567899999999986642 33345567789987753 4578999999887766665
No 255
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=95.21 E-value=0.062 Score=30.66 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=42.6
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCce--eEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQ--RLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~--~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...+++....|+.+|.+.+...+. ..... .+..+|+....+ .-+++||.|.++-..-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 456677778899999999977642 11233 677899877643 578999999887666555
No 256
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=94.91 E-value=0.11 Score=28.63 Aligned_cols=60 Identities=17% Similarity=0.339 Sum_probs=42.3
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+.+ ++ ...|+.+|.+.+ ++++....+..+|..+..+ .-.+.-+++||.|.++-..-||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 55554 45 668999998877 4567777777899877543 2344578999999888766555
No 257
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.87 E-value=0.4 Score=30.19 Aligned_cols=61 Identities=30% Similarity=0.440 Sum_probs=41.5
Q ss_pred ceEEEeeCCCchHHHHHHHHh-hhc---CCCC----CceeEEEC-C---eec----------CCC----CcccccccCCC
Q 040824 87 KEIEIDIEPTDTIERIKERVE-EKE---GIPP----VQQRLIYA-G---KQL----------ADD----KTARDYNIEGG 140 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~-~~~---~i~~----~~~~l~~~-g---~~l----------~d~----~~L~~~~i~~~ 140 (154)
..+++.+-.++||.++|++|- ..+ +.|. +.+.|-|. | ..| +++ .||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 458888999999999999983 333 6553 44555542 1 111 221 37899999999
Q ss_pred CEEEEEE
Q 040824 141 SVLHLVL 147 (154)
Q Consensus 141 ~~i~~~~ 147 (154)
+++.++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997764
No 258
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=94.77 E-value=0.065 Score=29.77 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
+|+. +++....|+.+|.+.+ ++++....+..+|..+... ...+.-+++||.|.++-..-||
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 4554 4566778999998877 5667777777899877532 2234578999999887766554
No 259
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=94.69 E-value=0.14 Score=29.84 Aligned_cols=59 Identities=19% Similarity=0.378 Sum_probs=49.9
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
+.-.++-..++..||..++.+.+++-+.-.++..+..|+++++|.+-+++....+.+.+
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEE
Confidence 34456778899999999999999999998998888779999999999998777765544
No 260
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=94.50 E-value=0.33 Score=34.93 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=52.3
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEEE---CCe--ecCCCCcccccccCCCCEEEEEEe
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIY---AGK--QLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~~---~g~--~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
+.+.|..++| ++.+.+++++|+.++-..+++..|+.. +-+-|.+ +|. .|+.++++.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 5677778887 678999999999999999999999854 3345554 332 577788888887655555544443
No 261
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.40 E-value=0.3 Score=28.92 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.4
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCc-eeEEECCee
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYAGKQ 125 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~-~~l~~~g~~ 125 (154)
+.+.+.. +|....+.++++.+..+|.+++...++++..+ +.+.|....
T Consensus 7 vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 7 VRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp EEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred EEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 3444434 56688899999999999999999999987544 788887653
No 262
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.36 E-value=0.42 Score=30.15 Aligned_cols=64 Identities=28% Similarity=0.421 Sum_probs=45.8
Q ss_pred CCCEEEEEEeCCCcHHHHHHHHHhHh--CCC------CCCeEEEE-cc---e-EeccC-------------ceecccccc
Q 040824 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQ 62 (154)
Q Consensus 9 ~~~~~~~~v~~~~tv~~lk~~i~~~~--~~~------~~~q~L~~-~g---~-~L~d~-------------~~l~~~~i~ 62 (154)
++..+++.+-.-+||.++|++|-+.. ++| ++...|-| .| + .|.|. .||++|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568899999999999999997663 444 34566654 22 3 25542 258999999
Q ss_pred cccceeeeee
Q 040824 63 KESTLHLVLR 72 (154)
Q Consensus 63 ~~~~i~l~~~ 72 (154)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999977654
No 263
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.25 E-value=0.36 Score=27.03 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=42.2
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|+++|.-.. ....++++...|+.+|.+.+ ++++....+..+|..+..+. -+++|+.|.+...
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 455555432 23567788889999999875 55666666668888876554 5677888866543
No 264
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.16 E-value=0.069 Score=34.06 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=30.5
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
..+.|..++|+.+|+..+.+.+|+|++.|+|+.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467888999999999999999999999999984
No 265
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.91 E-value=0.35 Score=30.13 Aligned_cols=64 Identities=30% Similarity=0.482 Sum_probs=44.5
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhc--CCC------CCceeEEE-CC---e-ecCC-------------CCcccccccCC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIY-AG---K-QLAD-------------DKTARDYNIEG 139 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~--~i~------~~~~~l~~-~g---~-~l~d-------------~~~L~~~~i~~ 139 (154)
...+++.+-.++||.++|++|-... +.| ++.+.|-| .| . .|.| =.||+.|++.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3458888999999999999994433 344 34556665 23 2 2322 13799999999
Q ss_pred CCEEEEEEee
Q 040824 140 GSVLHLVLAL 149 (154)
Q Consensus 140 ~~~i~~~~~~ 149 (154)
|+++.++-+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887654
No 266
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.88 E-value=0.067 Score=34.12 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=29.6
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
..+.|..++|+.+|+..+++.+|+|++.++|-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 45799999999999999999999999999886
No 267
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.86 E-value=0.32 Score=30.34 Aligned_cols=62 Identities=32% Similarity=0.521 Sum_probs=43.8
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHh--CCC------CCCeEEEE-cc---e-EeccC-------------ceecccccccc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~--~~~------~~~q~L~~-~g---~-~L~d~-------------~~l~~~~i~~~ 64 (154)
..+++.+-.-+||.++|++|-+.. +.| ++...|-+ .| + .|.|. .||++|++.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 447888989999999999997653 444 33455554 22 2 35542 25899999999
Q ss_pred cceeeeee
Q 040824 65 STLHLVLR 72 (154)
Q Consensus 65 ~~i~l~~~ 72 (154)
+++.++.+
T Consensus 107 atl~l~~~ 114 (117)
T 4e74_A 107 SVVALVSK 114 (117)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99987654
No 268
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=93.83 E-value=0.53 Score=34.23 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=54.2
Q ss_pred ecceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEEE--CCe--ecCCCCcccccccCCCCEEEEEEe
Q 040824 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIY--AGK--QLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 74 ~~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~~--~g~--~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
...+.+.|..++| ++.+.+++++|+.+|-..+++..|+.. +-+-|.+ +|. .|+.+.++.+.+...+....+..+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 3456777888888 788999999999999999999999853 3345554 443 577888888887655555444433
No 269
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=93.56 E-value=0.027 Score=32.43 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=40.7
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.+++++..|+.+|.+.+ ++++....+..+|+.+..+ .-+++||.|.++-..-||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 34666778999998765 4667777788999988654 578999999877666555
No 270
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.41 E-value=0.52 Score=26.58 Aligned_cols=68 Identities=13% Similarity=0.292 Sum_probs=42.0
Q ss_pred CEEEEEeCCC-CEEEEEEeCCCcHHHHHHHHHhHhCCCC--CCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~--~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
|.++|+.... +.-.+++ ...|+.+|.+.+...-++.. ....+.-||+...+ .+.-+++|+.|.+....
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv 71 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV 71 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence 7788877643 1134566 67899999999986433221 23344456665432 24557888988776543
No 271
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=93.13 E-value=0.75 Score=27.07 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=41.7
Q ss_pred EEeeCCCchHHHHHHHHhhhcCC------C-------CCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 90 EIDIEPTDTIERIKERVEEKEGI------P-------PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i------~-------~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
.++. +..||.+|.+.+..++.- . .....+..+|.......- .+.-+++||.|.++-..-||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 4554 457999999999887631 1 113567788887754222 24568999999888777766
No 272
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=93.02 E-value=0.53 Score=37.45 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=54.2
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCC-CCceeEEEC---C--eecCCCCcccccccCCCCEEEEEEe
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIYA---G--KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~-~~~~~l~~~---g--~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.++.+.|..++| ++.+.+++++|+.+|-..|+...|+. .+-+-|.+. | ..|+.+.++.+.++..+....+..+
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 346677888888 67899999999999999999999985 344566542 2 3677788888887766665555444
No 273
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=92.92 E-value=0.52 Score=27.46 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=40.4
Q ss_pred EeeCCCchHHHHHHHHhhhcC------C-----CCCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 91 IDIEPTDTIERIKERVEEKEG------I-----PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tv~~LK~~i~~~~~------i-----~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
++++...|+.+|.+.+...+. + ......+..+|+..... .-.+.-+++||.|.++-..-||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 455566899999999987752 1 01345677888766522 1234468999999887665554
No 274
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.23 E-value=1.3 Score=27.78 Aligned_cols=60 Identities=33% Similarity=0.496 Sum_probs=40.5
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhH----hCCCC----CCeEEEE-cc---eEeccC--------------ceecccccccc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF-AG---KQLEDG--------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~----~~~~~----~~q~L~~-~g---~~L~d~--------------~~l~~~~i~~~ 64 (154)
+.+++.+-.-+||.++|++|-.. .++|. ++..|-| .| ..|.|. .||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46889999999999999999644 36654 3444443 22 333331 25778899999
Q ss_pred cceeee
Q 040824 65 STLHLV 70 (154)
Q Consensus 65 ~~i~l~ 70 (154)
+++.++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 988654
No 275
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=91.67 E-value=1.2 Score=26.37 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=33.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCC-eEEEEc
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA 46 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-q~L~~~ 46 (154)
+|++.. +|..+.+.++++.+..+|.+++....+++... ..+.|.
T Consensus 8 kvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 8 RVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp EEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred EEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 344444 56788999999999999999999999987533 555554
No 276
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=91.65 E-value=0.71 Score=33.38 Aligned_cols=73 Identities=15% Similarity=-0.041 Sum_probs=51.7
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC-CceeEEEC---C--eecCCCCcccccccCCCCEEEEEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIYA---G--KQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-~~~~l~~~---g--~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
..+.+.|..++|....+.+++++|+.+|-..+++..|+.. +-+-|.+. | ..|+.++++.+........+++.+
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 4577888889999999999999999999999999999853 33555542 3 357777777776533334454443
No 277
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=91.39 E-value=1.2 Score=25.60 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=54.8
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEEE-CCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~-~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.+.|+.......+-+-.++.+.+|+...-++. .|-=++..++-...-++.|+.+.++-|-|-|.
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 47788888888888889999999998887774 56678888999999999999999998887775
No 278
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=90.89 E-value=0.33 Score=29.30 Aligned_cols=59 Identities=12% Similarity=0.284 Sum_probs=40.9
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCC---C--------ceeEEECC-eecC------CCCcccccccCCCCEEEEE
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPP---V--------QQRLIYAG-KQLA------DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~---~--------~~~l~~~g-~~l~------d~~~L~~~~i~~~~~i~~~ 146 (154)
...++++++.|+.+|...+++.-.+.. + .-.|++.+ ..|+ -+++|.+.|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456889999999999999988543221 1 33444333 1222 3567999999999999885
No 279
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=90.79 E-value=1.9 Score=26.65 Aligned_cols=64 Identities=9% Similarity=0.104 Sum_probs=37.4
Q ss_pred eEEEeeCC---CchHHHHHHHHhhhcC-CC----------CCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 88 EIEIDIEP---TDTIERIKERVEEKEG-IP----------PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~---~~tv~~LK~~i~~~~~-i~----------~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
...++++. ..||.+|...+++.+. .. .....++.++....-- -=.++-+++||.|.++-..-||
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTTTCBCCSSEEEEEEECSCCC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCcCcCCCCCCEEEEeCCCCCC
Confidence 45677773 3699999999998762 11 0112233344321100 1135679999999776665555
No 280
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.67 E-value=1.7 Score=25.88 Aligned_cols=67 Identities=10% Similarity=0.242 Sum_probs=42.9
Q ss_pred CEEEEEeCC------C-CEEEEEEeCCCcHHHHHHHHHhHhC-C----------CCCCeEEEEcceEeccCceecccccc
Q 040824 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (154)
Q Consensus 1 m~v~v~~~~------~-~~~~~~v~~~~tv~~lk~~i~~~~~-~----------~~~~q~L~~~g~~L~d~~~l~~~~i~ 62 (154)
|+|+|+.-. | ....++++...||.+|.+.+..... + ......+..||+.... ++.++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 456666542 3 4567888888999999999976631 1 0123445566666542 55678
Q ss_pred cccceeeeee
Q 040824 63 KESTLHLVLR 72 (154)
Q Consensus 63 ~~~~i~l~~~ 72 (154)
+|+.|.+...
T Consensus 85 dGDeV~i~pp 94 (98)
T 1vjk_A 85 DGDVVGVFPP 94 (98)
T ss_dssp TTCEEEEESC
T ss_pred CCCEEEEECC
Confidence 8888876543
No 281
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=90.53 E-value=1.9 Score=26.24 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=50.8
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE---ECCe--ecCCCCcccccccCCCCEEEEEEe
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI---YAGK--QLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~---~~g~--~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
...|-..+.+...+.++.+.|+.+++..++.+.+...+.+.|. ++|. .++++..--.-.+.-+..|++..+
T Consensus 11 ~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 11 FCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3344455667788899999999999999999999887778776 5665 345544444445566777777654
No 282
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=90.49 E-value=0.82 Score=27.66 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=42.5
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC-ceeEE--EC----CeecCCCCcccc
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLI--YA----GKQLADDKTARD 134 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~-~~~l~--~~----g~~l~d~~~L~~ 134 (154)
.+..+.+-..+|+...+.|++++|+.++-+.++.+.++..+ ...|+ +. .+.++|...+-+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 34566777789999999999999999999999999987533 33333 22 135566554443
No 283
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=89.51 E-value=2.1 Score=34.24 Aligned_cols=63 Identities=30% Similarity=0.478 Sum_probs=44.5
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHh--CCCC------CCeEEEE-c---ce-EeccCc-------------eecccccccc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-A---GK-QLEDGR-------------TLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~--~~~~------~~q~L~~-~---g~-~L~d~~-------------~l~~~~i~~~ 64 (154)
+..++.+-.-+||.++|++|-+.. |+|. +...|-| . |+ .|.|.. ||++|++++|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 447889999999999999997552 4443 4455554 2 33 355532 6999999999
Q ss_pred cceeeeeee
Q 040824 65 STLHLVLRL 73 (154)
Q Consensus 65 ~~i~l~~~~ 73 (154)
+++.++.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999877654
No 284
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=89.43 E-value=2 Score=26.61 Aligned_cols=62 Identities=10% Similarity=0.228 Sum_probs=49.4
Q ss_pred ceEEEeeCCCchHHHHHHHH-hhhcC-------CCCCceeEEECCeecC--CCCcccccccCCCCEEEEEEe
Q 040824 87 KEIEIDIEPTDTIERIKERV-EEKEG-------IPPVQQRLIYAGKQLA--DDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i-~~~~~-------i~~~~~~l~~~g~~l~--d~~~L~~~~i~~~~~i~~~~~ 148 (154)
..+.+.+++.++.++|-+.+ ...++ ++.+.-+|..+|++.. .+++|++.|+...|.|.+.-.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TP 109 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTP 109 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECT
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCC
Confidence 55789999999999998776 33333 5666778999999875 678999999999999876543
No 285
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=89.31 E-value=1.1 Score=27.03 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=40.9
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE---c----ceEeccCceecc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---A----GKQLEDGRTLAD 58 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~---~----g~~L~d~~~l~~ 58 (154)
|+|-..+|....+.|++++|+.++.+.+..+.++..+.-.=++ . -+.++|+..+-+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vve 74 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVE 74 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHH
Confidence 5677789999999999999999999999999986644332211 1 266777665433
No 286
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=89.21 E-value=1.8 Score=26.36 Aligned_cols=68 Identities=10% Similarity=0.228 Sum_probs=47.7
Q ss_pred EEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE---Ecc--eEeccCceecccccccccceeeeee
Q 040824 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 5 v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~---~~g--~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
|=..+...+.+.+..+.|+.+++..+.++.+...+.+.|. ++| ..|+++..--.-.+..+..++++.+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4344567788899999999999999999999877678776 456 3355555433334555566666654
No 287
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=88.90 E-value=3.2 Score=29.69 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=49.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCC-eEEEE---cc--eEeccCceecccccccccceee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG--KQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-q~L~~---~g--~~L~d~~~l~~~~i~~~~~i~l 69 (154)
|.+.|...+| +..+.++..+|+.++-+.+....|+.... =-|.+ +| ..|+.+..+.+.+.+.+....+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l 75 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLF 75 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEE
Confidence 4688899887 67899999999999999999999976533 23333 23 4577778887766544444433
No 288
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=88.72 E-value=2.6 Score=25.29 Aligned_cols=71 Identities=23% Similarity=0.243 Sum_probs=54.7
Q ss_pred EEEEEeCCC---CEEEEEEeCCCcHHHHHHHHHhHhCCC--CCCeEEEEcc---eEeccCceecccccccccceeeeee
Q 040824 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~~---~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~q~L~~~g---~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
+|+|...+. ....++|.-+.-|+.+..++-++..++ =++.-|.+.- ..++...+|..||+..++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577777554 457889988899999999998777655 3456666542 5578889999999999998876654
No 289
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=88.64 E-value=3.6 Score=29.77 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=48.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCC-eEEEE--cc--eEeccCceecccccccccce
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AG--KQLEDGRTLADYNIQKESTL 67 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-q~L~~--~g--~~L~d~~~l~~~~i~~~~~i 67 (154)
+.+.|...+| .+.++++..+|+.++-+.|....++.... --|.+ +| .+|+.+..+.+.+.+.+...
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~ 93 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPV 93 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCE
Confidence 3578888888 78899999999999999999999977422 23433 33 45788888888765444444
No 290
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.03 E-value=2.5 Score=33.80 Aligned_cols=63 Identities=27% Similarity=0.566 Sum_probs=43.4
Q ss_pred ceEEEeeCCCchHHHHHHHHhhh--cCCC------CCceeEEEC----Ce-ecCCC-------------CcccccccCCC
Q 040824 87 KEIEIDIEPTDTIERIKERVEEK--EGIP------PVQQRLIYA----GK-QLADD-------------KTARDYNIEGG 140 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~--~~i~------~~~~~l~~~----g~-~l~d~-------------~~L~~~~i~~~ 140 (154)
..+++.|-.++||.++|++|-.. .|.| ++.+-|-|. |. .|.|. .||+.|++.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45889999999999999999532 2344 345556652 22 23331 37999999999
Q ss_pred CEEEEEEee
Q 040824 141 SVLHLVLAL 149 (154)
Q Consensus 141 ~~i~~~~~~ 149 (154)
+++.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876443
No 291
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.82 E-value=1.6 Score=25.57 Aligned_cols=57 Identities=11% Similarity=0.137 Sum_probs=37.7
Q ss_pred CCCEEEEEEeCC-CcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 9 ~~~~~~~~v~~~-~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
||+ +++++.. .||.+|.+.+ ++++....+..||..+.. ....+.-+++|+.|.++..
T Consensus 26 NGe--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEE
T ss_pred CCE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcc
Confidence 454 3445666 8999998875 566666666678877642 2333456888998876643
No 292
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.64 E-value=3.8 Score=32.74 Aligned_cols=72 Identities=25% Similarity=0.425 Sum_probs=48.3
Q ss_pred EEEEEeCC---CCEEEEEEeCCCcHHHHHHHHHhHh--CCC------CCCeEEEE-c---ce-EeccC------------
Q 040824 2 QIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG------------ 53 (154)
Q Consensus 2 ~v~v~~~~---~~~~~~~v~~~~tv~~lk~~i~~~~--~~~------~~~q~L~~-~---g~-~L~d~------------ 53 (154)
.|+|-..+ .+..++.+-.-+||.++|++|-+.. ++| ++...|-| . |+ .|.|.
T Consensus 235 tL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkr 314 (627)
T 3ig3_A 235 TLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKR 314 (627)
T ss_dssp EEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEE
T ss_pred EEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeE
Confidence 34444433 2558899999999999999997653 444 44455554 2 22 34442
Q ss_pred -ceecccccccccceeeeeee
Q 040824 54 -RTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 54 -~~l~~~~i~~~~~i~l~~~~ 73 (154)
.||++|++++|+++.++.+.
T Consensus 315 LNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 315 VNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp CCBTTTTTCCTTCEEEEEEC-
T ss_pred ecchhhcCCCCCceEEEEecc
Confidence 26999999999999887654
No 293
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=87.53 E-value=3.1 Score=24.75 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=39.3
Q ss_pred ceEEEeeC--CCchHHHHHHHHhhhcCCCCC-------------ceeEEECCeecCCCCcccccccCCCCEEEEEEeecC
Q 040824 87 KEIEIDIE--PTDTIERIKERVEEKEGIPPV-------------QQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 87 ~~~~~~v~--~~~tv~~LK~~i~~~~~i~~~-------------~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
+...++++ +..||.+|.+.+.+++.-... ...+..++....-. .=.++-+++||.|.++-..-|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCCCcCcCCCCEEEEECCCCC
Confidence 34556666 678999999999887732111 11234555432100 013557899999987766655
Q ss_pred C
Q 040824 152 G 152 (154)
Q Consensus 152 g 152 (154)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 294
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=87.37 E-value=3.1 Score=25.00 Aligned_cols=59 Identities=10% Similarity=0.235 Sum_probs=40.3
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCCCCC-----------CeEEEEcc-eEe------ccCceecccccccccceeee
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQL------EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~-----------~q~L~~~g-~~L------~d~~~l~~~~i~~~~~i~l~ 70 (154)
...+++++++|+.+|.+.+.+.-.+.-. ...|+..+ ..| +-+++|.+.|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999885332222 34555443 111 12557899999999988765
No 295
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=87.01 E-value=3.4 Score=24.77 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=53.0
Q ss_pred eeeeeeecCC---ceEEEeeCCCchHHHHHHHHhhhcCC--CCCceeEEECCe---ecCCCCcccccccCCCCEEEEE
Q 040824 77 TMIKVKTLTG---KEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGK---QLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~~---~~~~~~v~~~~tv~~LK~~i~~~~~i--~~~~~~l~~~g~---~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
+.|+|...+. ....++|..+..|+.+..++-+...+ +.++.-|-+..+ .+.-..||..|||+..+.+++.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 4566666443 45788999899999999999877765 455566665543 6778899999999999988764
No 296
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=86.89 E-value=3.1 Score=30.00 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=46.4
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCC-eEEEEc---c--eEeccCceecccc
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYN 60 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-q~L~~~---g--~~L~d~~~l~~~~ 60 (154)
|.+.|...+|....++++..+|+.+|-+.|.++.|+.... --|.+. | ..|+.+..+.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 5688999999999999999999999999999999976432 344432 2 5577777766653
No 297
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=86.82 E-value=4.8 Score=31.99 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=49.8
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEEc---c--eEeccCceecccccccccceee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~~---g--~~L~d~~~l~~~~i~~~~~i~l 69 (154)
|.+.|...+| ++.+.++..+|+.+|-..|....|+... .--|+|. | .+|+.+.++.+.+++.+..+.+
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 4678888888 6789999999999999999999997643 3344442 2 5677788888776555544433
No 298
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=86.71 E-value=0.85 Score=28.06 Aligned_cols=63 Identities=11% Similarity=0.249 Sum_probs=35.8
Q ss_pred ceEEEeeCC----CchHHHHHHHHhhhcCCCCCcee---------------EEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 87 KEIEIDIEP----TDTIERIKERVEEKEGIPPVQQR---------------LIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 87 ~~~~~~v~~----~~tv~~LK~~i~~~~~i~~~~~~---------------l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
+...++++. ..||.+|-..+++.+.- .+-. ++.||+..+-. -=.++-+++||.|.++-
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~~~~--~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l-~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTNYVK--ERPDLLVDQTGQTLRPGILVLVNSCDAEVV-GGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTTTCC--SCHHHHBCSSSSSBCTTEEEEESSSBHHHH-TSSCCCCCSSCEEEEEE
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHHccc--cchhhEecCCCcccCCCeEEEECCeeeecc-CCcccCCCCcCEEEEeC
Confidence 345677763 35999999999887631 1222 22333221100 01356799999987765
Q ss_pred eecCC
Q 040824 148 ALRGG 152 (154)
Q Consensus 148 ~~~gg 152 (154)
.+-||
T Consensus 98 tlhg~ 102 (110)
T 2k9x_A 98 TLHGG 102 (110)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 55444
No 299
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.40 E-value=1.3 Score=26.66 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=28.8
Q ss_pred EEEEEeCC-------CCEEEEEEeCCCcHHHHHHHHHhHhCCC
Q 040824 2 QIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 2 ~v~v~~~~-------~~~~~~~v~~~~tv~~lk~~i~~~~~~~ 37 (154)
+|+|...+ +..+.+.++++.+..+|..+|..+++.+
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 45666542 4568999999999999999999998754
No 300
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=85.95 E-value=1.8 Score=25.94 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=42.9
Q ss_pred ceEEEeeCCCchHHHHHHHHhh--h-cCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 87 KEIEIDIEPTDTIERIKERVEE--K-EGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~--~-~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
..+.+++++..||.++-+...- . ..+..+...+..+|+... .+.-+++||.|.++-.+
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCCC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEecc
Confidence 3467888999999999888753 2 245566677888888776 44568999999987443
No 301
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=85.83 E-value=3.6 Score=23.94 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=28.7
Q ss_pred EEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhHhCCC
Q 040824 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 3 v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~~~~~ 37 (154)
++||.. ++..|.+.++.+.+..+|+.+|..+..+.
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 344444 45679999999999999999999999883
No 302
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=85.41 E-value=3.3 Score=33.05 Aligned_cols=64 Identities=22% Similarity=0.424 Sum_probs=44.0
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhc--CCC------CCceeEEEC----Ce-ecCC-------------CCcccccccCC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GK-QLAD-------------DKTARDYNIEG 139 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~--~i~------~~~~~l~~~----g~-~l~d-------------~~~L~~~~i~~ 139 (154)
...+++.|-.++||.++|++|-... +.| ++.+-|-|. |+ .|.| =.||+.|++.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568899999999999999994433 333 455566552 22 2322 13799999999
Q ss_pred CCEEEEEEee
Q 040824 140 GSVLHLVLAL 149 (154)
Q Consensus 140 ~~~i~~~~~~ 149 (154)
|+++.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999887554
No 303
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=85.37 E-value=3.8 Score=23.71 Aligned_cols=60 Identities=12% Similarity=0.248 Sum_probs=48.5
Q ss_pred EEEeeCCCchHHHHHHHHhhhc-C--C--CCC-ceeEEECC--eecCCCCcccccccCCCCEEEEEEe
Q 040824 89 IEIDIEPTDTIERIKERVEEKE-G--I--PPV-QQRLIYAG--KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~-~--i--~~~-~~~l~~~g--~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
.-+.++..+|..++-++++... | + .|. ..+..++| ..+..+.|+++.||.+-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 4578999999999999997655 3 3 222 46777888 8899999999999999999988753
No 304
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=85.00 E-value=3.8 Score=25.78 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=35.7
Q ss_pred CchHHHHHHHHhhhcCCCCCce--------eEEECCee-cCCCCcccccccCCCCEEEEE
Q 040824 96 TDTIERIKERVEEKEGIPPVQQ--------RLIYAGKQ-LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 96 ~~tv~~LK~~i~~~~~i~~~~~--------~l~~~g~~-l~d~~~L~~~~i~~~~~i~~~ 146 (154)
..|..+|-..+..++|.+- .+ +|+|..-. =+-.++|++.|+++|+.|.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 4689998888888888753 44 44433321 124679999999999999876
No 305
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=84.63 E-value=3.5 Score=22.68 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=38.1
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeee
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~ 70 (154)
|.++|...+|+. .+++.+.|+.++-..+....+ ....-...+|+...-+ +.+.+++.|.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 788898888875 566788999999888743321 1112223577665443 445566766554
No 306
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=84.55 E-value=3.6 Score=30.55 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=39.5
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceE--eccCceecccc
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYN 60 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~--L~d~~~l~~~~ 60 (154)
....+.+++..|+.++++++++.++++++.|.|++.+.. ++.......|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 446678889999999999999999999999999998733 34444555544
No 307
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=83.09 E-value=5 Score=23.24 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=48.1
Q ss_pred EEEeeCCCchHHHHHHHHhhhc-C--C--CCCceeEEECCee--cCCCCcccccccCCCCEEEEEE
Q 040824 89 IEIDIEPTDTIERIKERVEEKE-G--I--PPVQQRLIYAGKQ--LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~-~--i--~~~~~~l~~~g~~--l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.-+.++..+|..++-++++... | + .|...+...+|.. +..+.|+++.||.+-+.|.++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578899999999999987654 3 2 2335677889987 9999999999999999998875
No 308
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=82.96 E-value=4.2 Score=22.33 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=38.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEe
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~ 148 (154)
|.+.|..++|+. .+++...|+.++-+.+....+ ....-...+|+..+-+ +-+.+|+.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 456666667765 456678999999887743321 1122234688766543 45567888877643
No 309
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=82.38 E-value=3.3 Score=24.63 Aligned_cols=56 Identities=7% Similarity=0.191 Sum_probs=36.1
Q ss_pred CchHHHHHHHHhhhcC-CCC---------Cce-------eEEECCeecCCCCcccccccCCCCEEEEEEeecCC
Q 040824 96 TDTIERIKERVEEKEG-IPP---------VQQ-------RLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 96 ~~tv~~LK~~i~~~~~-i~~---------~~~-------~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg 152 (154)
..|+.+|.+.+...+. +.. ... .+..+|+...... -.+.-+++||.|.++-..-||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECCCCCC
Confidence 5899999999987752 111 123 5667887653221 234468999999887666555
No 310
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=82.34 E-value=5.1 Score=29.69 Aligned_cols=52 Identities=25% Similarity=0.308 Sum_probs=40.8
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe--ecCCCCcccccc
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK--QLADDKTARDYN 136 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~--~l~d~~~L~~~~ 136 (154)
......+.+.+..|+.++++.+++.++++++.|.+++.+. .++.......+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 3455678899999999999999999999999999999873 334444444444
No 311
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=81.99 E-value=5.2 Score=26.44 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=42.1
Q ss_pred EEeeCCCchHHHHHHHHhhhcC-CC---------CCceeEEECCeecCCCCcccccccCCCCEEEEEEeecCCC
Q 040824 90 EIDIEPTDTIERIKERVEEKEG-IP---------PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~-i~---------~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
.++++. .||.+|.+.+...+. +. .....+..||....... -.+.-+++||.|.++-..-||.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG~ 88 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGGG 88 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSEE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECcccccc
Confidence 345555 899999999987652 10 23456778888775422 2345689999998887777663
No 312
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.15 E-value=6.1 Score=22.97 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=40.9
Q ss_pred CEEEEEeCC------CCEEEEEEeCCCcHHHHHHHHHhHhC-----C-C---CC----CeEEEEcceEeccCceeccccc
Q 040824 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-----I-P---PD----QQRLIFAGKQLEDGRTLADYNI 61 (154)
Q Consensus 1 m~v~v~~~~------~~~~~~~v~~~~tv~~lk~~i~~~~~-----~-~---~~----~q~L~~~g~~L~d~~~l~~~~i 61 (154)
|+|+|+... |....++. ...||.+|.+.+..... + . .. ...+..||+......- .+.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667776542 32234564 56899999999987642 0 1 01 2345566766543221 24467
Q ss_pred ccccceeeeeee
Q 040824 62 QKESTLHLVLRL 73 (154)
Q Consensus 62 ~~~~~i~l~~~~ 73 (154)
++|+.|.+....
T Consensus 79 ~~gDeV~i~Ppv 90 (93)
T 3dwg_C 79 ADGDSVTILPAV 90 (93)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEECCC
Confidence 889988776543
No 313
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=81.01 E-value=5.6 Score=24.79 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=45.2
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCC------ceeEE---ECCe--ecCCCCcccccccCCCCEEEEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV------QQRLI---YAGK--QLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~------~~~l~---~~g~--~l~d~~~L~~~~i~~~~~i~~~ 146 (154)
...|-..+.+.+.+.++.+.|+.+++..++.+.+..-+ .+.|. ++|. .++++..--.-.+.-+..|++.
T Consensus 11 ~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc 90 (120)
T 2dhz_A 11 FCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFAC 90 (120)
T ss_dssp EECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEE
T ss_pred EEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEe
Confidence 33344456667778899999999999999999987544 56665 5665 3444433333334455566554
Q ss_pred E
Q 040824 147 L 147 (154)
Q Consensus 147 ~ 147 (154)
.
T Consensus 91 ~ 91 (120)
T 2dhz_A 91 T 91 (120)
T ss_dssp C
T ss_pred e
Confidence 3
No 314
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=80.78 E-value=5.2 Score=22.49 Aligned_cols=56 Identities=4% Similarity=0.077 Sum_probs=35.8
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhC-----CCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~-----~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
....++ ....||.+|.+.+..... ++.....+..||+.... +..+++|+.|.+...
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPP 77 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCC
Confidence 345555 567899999999875421 22333456677876643 446778888876643
No 315
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=80.26 E-value=6.6 Score=24.69 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHhHhCCCCCCeEEEE--cceEecc-------Cceecccccccccceeeee
Q 040824 20 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED-------GRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 20 ~~tv~~lk~~i~~~~~~~~~~q~L~~--~g~~L~d-------~~~l~~~~i~~~~~i~l~~ 71 (154)
.+|..+|-+.+..+.|++. ...+.- +.+.|.| +++|++.|+++|+.+.+.-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4699999988988888864 444432 2344433 5689999999999886654
No 316
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=79.76 E-value=4.1 Score=22.69 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=36.6
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCe--EEEEcceEeccCceecccccccccceeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q--~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
....+++....||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.+...
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECC
Confidence 3456677778899999999876531 01222 456778777543 45777888866543
No 317
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=79.56 E-value=6.8 Score=22.52 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=38.8
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhC-C-----CC-----CCeEEEEcceEeccCceecccccccccceeeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~-~-----~~-----~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~ 73 (154)
....++++...||.+|.+.+..... + .. ....+..||+.... +.-+++++.|.+....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCC
Confidence 5577888888999999999977642 1 10 12355567776654 4557788888766543
No 318
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=79.03 E-value=5.1 Score=24.99 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=44.8
Q ss_pred eCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCC------CeEEE---Ecc--eEeccCceecccccccccceeeeee
Q 040824 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 7 ~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~------~q~L~---~~g--~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
..+...+.+.+..+.|+.+++..+.++.+...+ .+.|. ++| ..|+++..--.-.+..+..++++.+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 334556778999999999999999999886544 67775 455 4466655433334555566666654
No 319
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=78.48 E-value=3.9 Score=33.22 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=40.2
Q ss_pred CCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe-ecCCCCcccc
Q 040824 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK-QLADDKTARD 134 (154)
Q Consensus 85 ~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~-~l~d~~~L~~ 134 (154)
..+...+.+.++.|+.+++..+.+.+|++++.|.+++... .++.......
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~ 370 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQ 370 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGG
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhh
Confidence 4556788999999999999999999999999999997643 5555544444
No 320
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=78.24 E-value=2.1 Score=34.78 Aligned_cols=50 Identities=32% Similarity=0.604 Sum_probs=40.7
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-ceEeccCceeccc
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 59 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-g~~L~d~~~l~~~ 59 (154)
.+...+.+.++.|+.+++..++..++++++.|.+++. |..+.+....+++
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 3456788889999999999999999999999999976 4556666565554
No 321
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=78.07 E-value=3.2 Score=25.28 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=50.1
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCC--CCCceeEEECC---eecCCCCcccccccCCCCEEEE
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAG---KQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i--~~~~~~l~~~g---~~l~d~~~L~~~~i~~~~~i~~ 145 (154)
+.|+|...+ ....++|..+..|+.+..++-+...+ +.++.-|-+.. ..+.-..||..|||+..+.+++
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~f 99 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQF 99 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCB
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceecccccee
Confidence 344554444 56788898889999999999877765 44555555544 3677889999999998887754
No 322
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=78.00 E-value=1.9 Score=24.46 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=34.8
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeee
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
.++++...||.+|.+.+ ++++....+..||+....+ .-+++|+.|.+...
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~pp 73 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcc
Confidence 34566778999998765 3566666677888887654 55778888866543
No 323
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=75.75 E-value=2.3 Score=25.90 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=47.4
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCC--CCCeEEEEc---ceEeccCceecccccccccceeeeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~q~L~~~---g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
...+++|.-+.-|+.+..++-++..++ =++.-|.+. -..++...+|..||+..++.+++...
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 557788888889999999998877655 334556653 25678889999999999998876654
No 324
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=75.68 E-value=4.3 Score=24.35 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=29.3
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCC-----CceeEEECC
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPP-----VQQRLIYAG 123 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~-----~~~~l~~~g 123 (154)
+..+.+.|+++.+..+|..+|.++.+++. ...++.|+.
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkD 64 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 64 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEEC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEc
Confidence 34688999999999999999999998642 224666655
No 325
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=75.13 E-value=12 Score=26.92 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.5
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-------ceEeccCceecc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 58 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-------g~~L~d~~~l~~ 58 (154)
|.|-..+|....+.|++++|+.+|-+.+..+.+.....-.-++. -+.|.++..+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 55666688889999999999999999998888765444333332 266777665443
No 326
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=74.68 E-value=10 Score=22.10 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=23.2
Q ss_pred EEEeeCC-CchHHHHHHHHhhhcCCCCCceeEE
Q 040824 89 IEIDIEP-TDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 89 ~~~~v~~-~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
-.+.++. ..+|.+||..|..+.++-..++-|.
T Consensus 20 ~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 20 DTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred ceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 3466654 4699999999988888755566554
No 327
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=74.10 E-value=11 Score=21.97 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=34.5
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~ 124 (154)
..|.|.+-.. +-.+.+.++++.+..+|+.+|+.+..+. .+.+. +++.
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSS
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCC
Confidence 3455655553 4588999999999999999999999983 44443 5543
No 328
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=72.86 E-value=11 Score=30.47 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=40.1
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCC-CCCceeEEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI-PPVQQRLIY 121 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i-~~~~~~l~~ 121 (154)
.++.+.|..++|....+.+++++|+.++-..++.+.|+ ..+.+-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45778888999999999999999999999999999997 445566654
No 329
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=72.74 E-value=11 Score=29.63 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=39.7
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCC--CceeEEE
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP--VQQRLIY 121 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~--~~~~l~~ 121 (154)
.++.+.|..++|....+.+++++|+.+|-..++...|+.. +.+-|..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 3567888889999999999999999999999999999964 4556654
No 330
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=72.29 E-value=8.5 Score=23.91 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=36.2
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCce-eEEECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~-~l~~~g~~l~d~~~L~~~ 135 (154)
.+-|+.+.|++++...|.++..+++++- -|+.++.....+.++++.
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 97 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADI 97 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHH
Confidence 4678999999999999999999987774 555677755566677665
No 331
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=69.60 E-value=8.7 Score=24.10 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=35.1
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l~d~~~L~~~ 135 (154)
.+-|+.+.||+++...|.++..+++++--++ .++.....+.++++.
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHH
Confidence 4678999999999999999999988775444 466544556676665
No 332
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=68.90 E-value=14 Score=22.53 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=27.2
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhC
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 35 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~ 35 (154)
|..-.++|-...++++.++|+.++|+.+.+...
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~ 54 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEAR 54 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGG
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHH
Confidence 344556888899999999999999999987743
No 333
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=68.40 E-value=16 Score=21.60 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=34.0
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~ 124 (154)
.+.+.|.|++.+|=.++|+.++..+++.+....-+ ..|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 46899999999999999999999999999888554 6665
No 334
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=68.15 E-value=13 Score=26.30 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=37.3
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-------ceEeccCceecc
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 58 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-------g~~L~d~~~l~~ 58 (154)
|+|-..+|....+.|++++|+.+|-+.+..+.++..+.-.-.+. -|.|.|...+.+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 55666788889999999999999999998887765444433343 267777665543
No 335
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.87 E-value=12 Score=22.00 Aligned_cols=37 Identities=8% Similarity=0.147 Sum_probs=28.3
Q ss_pred chHHHHHHHHhhhcCCCCCceeEEE--CCeecCCCCccc
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLIY--AGKQLADDKTAR 133 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~~--~g~~l~d~~~L~ 133 (154)
.+..+|+++.+..++++....+|.. .|..++|+.-..
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~ 66 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQ 66 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHT
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhh
Confidence 3789999999999999876777764 588887655433
No 336
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=67.82 E-value=5.5 Score=22.71 Aligned_cols=36 Identities=8% Similarity=0.096 Sum_probs=29.3
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCC-----CCceeEEECC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIP-----PVQQRLIYAG 123 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~-----~~~~~l~~~g 123 (154)
.+.+.++++.+..+|..+|.++.+.. ....++.|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 46788999999999999999999975 3556777754
No 337
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=67.62 E-value=14 Score=20.93 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~ 147 (154)
.+.|..++|.. +.++...|+.++-..|....+-.. .--..+|+...- ++-+++|+.|.++-
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TCBCCTTCBEEEEE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----CcccCCCCEEEEEc
Confidence 46677778865 457778899999887765544211 112247766544 34678889888764
No 338
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=66.82 E-value=16 Score=26.30 Aligned_cols=37 Identities=11% Similarity=0.230 Sum_probs=30.9
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~ 113 (154)
+.+.|-..+|....+.|++++|+++|-+.++.+.+++
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~ 68 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG 68 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 3455656688889999999999999999998888864
No 339
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=66.51 E-value=12 Score=29.39 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=34.7
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
+.+.|...+|....+.++..+|+.++-+.+..+.|+..
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e 254 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMED 254 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTT
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCC
Confidence 35788899999999999999999999999999999875
No 340
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=65.84 E-value=12 Score=22.82 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=34.6
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCce-eEEECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~-~l~~~g~~l~d~~~L~~~ 135 (154)
.+-|+.+.|++++...|..+..+++++- .+..++.....+.++++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 4678889999999999999999987764 444566544556677665
No 341
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=64.52 E-value=7.5 Score=22.15 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.1
Q ss_pred EEEEEEeCCCcHHHHHHHHHhHhCCC
Q 040824 12 TITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 12 ~~~~~v~~~~tv~~lk~~i~~~~~~~ 37 (154)
.+.+.++++.+..+|..+|..+++..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57889999999999999999998754
No 342
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=64.44 E-value=20 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=28.7
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCC
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~ 113 (154)
.+.|-..+|....+.|++++|+++|-+.+..+..++
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~ 45 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSV 45 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCC
Confidence 455666788899999999999999999998887754
No 343
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=63.91 E-value=22 Score=22.42 Aligned_cols=47 Identities=4% Similarity=0.090 Sum_probs=35.6
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe-ecCCCCccccc
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK-QLADDKTARDY 135 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~-~l~d~~~L~~~ 135 (154)
-.+-|+.+.|++++...|.++..+++++--++ |-+. ....+.++++.
T Consensus 55 ~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 55 TKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred cEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 34678999999999999999999988776555 6554 33455666665
No 344
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=62.29 E-value=14 Score=22.54 Aligned_cols=62 Identities=8% Similarity=0.117 Sum_probs=40.5
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcC--------CCCCceeEEE-C--C--eecC-CCCcccccccC
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--------IPPVQQRLIY-A--G--KQLA-DDKTARDYNIE 138 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~--------i~~~~~~l~~-~--g--~~l~-d~~~L~~~~i~ 138 (154)
+.+.+-.++|-.+.++++.+.|+.++|+.+-+.-. -.++...+.. + + .++. +++.|.+...-
T Consensus 20 v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 20 ILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 34455566888889999999999999998844321 2455555543 2 2 2454 45777777654
No 345
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=62.13 E-value=31 Score=24.17 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.6
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCe
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q 41 (154)
|.|-..+|....+.+++++|..++.+.+..+.+++.+..
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 556667888889999999999999999999998765443
No 346
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=61.95 E-value=19 Score=21.19 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=33.3
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCe
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~ 124 (154)
+.+.|.|++.+|=.++|+.++..+++.+....-+ ..|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 7899999999999999999999999998888554 5654
No 347
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=61.80 E-value=14 Score=22.71 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=34.5
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCce-eEEECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~-~l~~~g~~l~d~~~L~~~ 135 (154)
.+-|+.+.|++++...|.++..+++++- .+..++.....+.++++.
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 4678889999999999999999987764 444566544566677665
No 348
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=60.80 E-value=19 Score=29.17 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.0
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHhCCCC-CCeEEEE
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~-~~q~L~~ 45 (154)
|.+.|...+|....+.++..+|+.++-+.+..+.|+.. +.--|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45788999999999999999999999999999998654 3334443
No 349
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=59.67 E-value=20 Score=22.18 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=34.4
Q ss_pred EEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeecCCCCccccc
Q 040824 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l~d~~~L~~~ 135 (154)
.+-|+.+.|++++...|.++..+++++--++ .++.....+.++++.
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHH
Confidence 4668999999999999999999987664444 466544555666655
No 350
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=59.51 E-value=29 Score=21.49 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=44.7
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhH-hC-------CCCCCeEEEEcceEecc--Cceecccccccccceeee
Q 040824 11 KTITLEVESSDTIDNVKAKIQDK-EG-------IPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLV 70 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~-~~-------~~~~~q~L~~~g~~L~d--~~~l~~~~i~~~~~i~l~ 70 (154)
..+.+-++++++.++|-+.+-.. .+ +.=+.-.+..+|+...+ +++|++.|+...+.|.+.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 34778999999999999887543 33 34444567788988754 669999999888877544
No 351
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=59.31 E-value=24 Score=24.69 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=32.6
Q ss_pred eeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCc
Q 040824 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ 116 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~ 116 (154)
+.+.+-..+|....+.|+++.|+.++-+.+..+.+++.+.
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 3455556788888999999999999999999999976543
No 352
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=58.78 E-value=24 Score=21.86 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecc
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~ 58 (154)
.-|+.+.||+++...|+...+++++.-..+| ++.....+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 4688999999999999999999887644444 6665555556554
No 353
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=58.53 E-value=27 Score=20.96 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred chHHHHHHHHhhhcCCCCC--ceeEE--ECCeecCCCCcccccccCCCCEEE
Q 040824 97 DTIERIKERVEEKEGIPPV--QQRLI--YAGKQLADDKTARDYNIEGGSVLH 144 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~--~~~l~--~~g~~l~d~~~L~~~~i~~~~~i~ 144 (154)
.+..+|+.+.+..++++.. ..+|. ..|..++|+.-...+ .++..+.
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~nT~lm 86 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL--PSNTKFV 86 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS--CSCCEEE
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC--CCCCEEE
Confidence 4789999999999999753 35665 468888766544333 3444443
No 354
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=56.79 E-value=34 Score=21.51 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=33.5
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-Ecc-eEeccCceeccc
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-KQLEDGRTLADY 59 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g-~~L~d~~~l~~~ 59 (154)
..-|+.+.||+++...|++..+++++.-..+ |.+ .....+.++++.
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 3468899999999999999999998766555 654 433445555543
No 355
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=55.92 E-value=27 Score=20.14 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=51.3
Q ss_pred EEEEEeCCCCE-EEEEEeCCCcHHHHHHHHHhHh-C--C--CCCCeEEEEcceE--eccCceecccccccccceeee
Q 040824 2 QIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKE-G--I--PPDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~~~~-~~~~v~~~~tv~~lk~~i~~~~-~--~--~~~~q~L~~~g~~--L~d~~~l~~~~i~~~~~i~l~ 70 (154)
.|...+.++-. .-+.++.++|+.++=+++.... | + .|...+...+|+. +-.+.++++-||++-+.|.+.
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 5 PVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred ceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 35556655544 4578899999999999997653 3 3 2345667788877 889999999999988877654
No 356
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=55.53 E-value=18 Score=21.98 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=36.6
Q ss_pred EEEEEeCCCCE------EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecc
Q 040824 2 QIFVKTLTGKT------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (154)
Q Consensus 2 ~v~v~~~~~~~------~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~ 58 (154)
.|.|+...+.. -.+-++.+.||+++...|+...+++++.-..+| ++.....+.++++
T Consensus 29 PVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 29 PVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 45565554322 234678899999999999999998886644444 4443344445544
No 357
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=54.14 E-value=24 Score=20.92 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=31.6
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECC
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAG 123 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g 123 (154)
.+.|.|++.+|=.++|+.++..+++.+....-+ ..|
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 489999999999999999999999999888655 555
No 358
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=53.89 E-value=32 Score=20.28 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=31.9
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-Ecce
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g~ 48 (154)
..+.+.+++.++=.++|+.++..+++.+...+-. ..|+
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 5788999999999999999999999998776543 5554
No 359
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=53.53 E-value=25 Score=20.38 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=31.7
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~ 121 (154)
.+.+.|.|++..|=.++|+.++..+++.+....-+.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~ 57 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQN 57 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeee
Confidence 468999999999999999999999999988876553
No 360
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=53.27 E-value=23 Score=20.73 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=34.4
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEE-ECCeec-CCCCccccc
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQL-ADDKTARDY 135 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~-~~g~~l-~d~~~L~~~ 135 (154)
-.+.|+.+.|++++..-|.++..+++++--++ .++.-+ ..+.++++.
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 35788999999999999999999987765444 465433 345566554
No 361
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=50.85 E-value=19 Score=24.27 Aligned_cols=49 Identities=22% Similarity=0.208 Sum_probs=40.0
Q ss_pred cceeeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 75 ~~~~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
....|.|...++..+.+.--..+-+..|++.+...++++++.-.+-.+|
T Consensus 83 rg~~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kG 131 (191)
T 3f5r_A 83 RGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRG 131 (191)
T ss_dssp SSEEEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTT
T ss_pred CCcEEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeeccc
Confidence 5567888877888899998888899999999999999987776554444
No 362
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.75 E-value=34 Score=19.83 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=31.7
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~ 121 (154)
.+.+.|.|++..+=.++|+.++..+++.+....-+.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~ 58 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLI 58 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeE
Confidence 468899999999999999999999999988876653
No 363
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=48.59 E-value=37 Score=19.48 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc-ceEeccCceecccccccccceeeeeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~-g~~L~d~~~l~~~~i~~~~~i~l~~~~~ 74 (154)
..+++++.+....+-.-..+.+++|+..--++.+ |.=++++.+-...=++.|+.+.++.+.+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 4578999999999988999999999988777754 5557778877766678888887776543
No 364
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=48.40 E-value=28 Score=21.79 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=31.9
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecc
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~ 58 (154)
.-|+.+.||+++...|++...++++.-..+| ++.....+.++++
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 4688999999999999999999887655555 4443344555544
No 365
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=48.35 E-value=31 Score=19.93 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=29.1
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
...+.+.+++.++=.++|+.+++.+++.+...+-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 3568899999999999999999999998865543
No 366
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=47.36 E-value=36 Score=20.13 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=29.7
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEE-Ecc
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG 47 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~-~~g 47 (154)
+.+.+++.++=.++|+.++..+++.+...+-. ..|
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~g 60 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCC
Confidence 88999999999999999999999998776543 344
No 367
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=46.70 E-value=41 Score=19.52 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=33.2
Q ss_pred eeeeec-CCceEEEeeC--CCchHHHHHHHHhhhcCCCCCceeEEECC
Q 040824 79 IKVKTL-TGKEIEIDIE--PTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 79 i~v~~~-~~~~~~~~v~--~~~tv~~LK~~i~~~~~i~~~~~~l~~~g 123 (154)
+.||.. ++....+.++ ...+..++..+++..+.++.....+.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 444443 4445556665 44799999999999999988888888754
No 368
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=46.16 E-value=42 Score=19.48 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=37.2
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+.+.-++++.-.+++.+..|+.+--.+..++-++.++.....
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 3555567888889999999999999999999999999998776
No 369
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=46.14 E-value=34 Score=20.61 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=39.7
Q ss_pred cCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCe--ecCCCCccc
Q 040824 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK--QLADDKTAR 133 (154)
Q Consensus 84 ~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~--~l~d~~~L~ 133 (154)
+.++.+.+...++-++.++-.-|-.++|+..++..+...|. +|+-..++.
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pVs 76 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPVS 76 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBGG
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCchh
Confidence 46788999999999999999999999999988888766664 455444433
No 370
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=45.29 E-value=44 Score=19.49 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.6
Q ss_pred EEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE
Q 040824 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 14 ~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~ 45 (154)
..-|+.+.|++++...|+++.+++++.--.+|
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFly 54 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIY 54 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 46788999999999999999998876555445
No 371
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=45.06 E-value=44 Score=21.25 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=51.5
Q ss_pred eeeeeee-cCCceEEEeeCCCchHHHHHHHHhhhcC--CCCCceeEEECCeecCCCCccccccc-CCCCEEEEEEeecCC
Q 040824 77 TMIKVKT-LTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~-~~~~~~~~~v~~~~tv~~LK~~i~~~~~--i~~~~~~l~~~g~~l~d~~~L~~~~i-~~~~~i~~~~~~~gg 152 (154)
+...+++ .+|...-+.- +.-+.|.+-++.... .+.++++|-.+|..-.+-+.+.+..+ -|+|+|.+.+.+.|+
T Consensus 24 ipaIvQd~~tg~VLMlay---MN~EAl~~Tl~tg~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 24 IIAVAQDHETGEVLMVAY---MNREALRRTLETGTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp EEEEEEETTTCCEEEEEE---ECHHHHHHHHHHSBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred EEEEEEECCCCCEEEEEe---cCHHHHHHHHhcCcEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 3444555 3555544332 334667777766555 57888999999987777778888877 799999999998876
Q ss_pred C
Q 040824 153 G 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 101 a 101 (138)
T 1zps_A 101 A 101 (138)
T ss_dssp S
T ss_pred c
Confidence 3
No 372
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=44.93 E-value=42 Score=19.07 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=36.6
Q ss_pred eeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 79 i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
+.+.-++++.-.+++.+..|+.+--.+..++-++.|+.....
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 455567888889999999999999999999999999988776
No 373
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=44.78 E-value=58 Score=20.67 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=47.8
Q ss_pred CEEEEEeCCCCEE-EEEEeCCCcHHHHHHHHHhHhCCCCCC---eEEE---EcceEe-ccCceecccccccccceeeeee
Q 040824 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQ---QRLI---FAGKQL-EDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~~~~~-~~~v~~~~tv~~lk~~i~~~~~~~~~~---q~L~---~~g~~L-~d~~~l~~~~i~~~~~i~l~~~ 72 (154)
++|.+...+|..+ .+-+...+....+.++.-++.+++.+. =.|+ =+|++| -++..=-.|.+...+...++++
T Consensus 28 IRVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR 107 (140)
T 3kh0_A 28 IRVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLK 107 (140)
T ss_dssp EEEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEE
T ss_pred EEEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEe
Confidence 3567776666554 588899999999999999998877664 1232 235554 3344444555655566666666
Q ss_pred ee
Q 040824 73 LR 74 (154)
Q Consensus 73 ~~ 74 (154)
..
T Consensus 108 ~k 109 (140)
T 3kh0_A 108 KR 109 (140)
T ss_dssp EC
T ss_pred ec
Confidence 44
No 374
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=44.69 E-value=35 Score=25.66 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=38.6
Q ss_pred cCCceEEEeeCCCchHHHHHHHHh--hhcCC---CCCceeEEEC----C--eecCCCCccccc
Q 040824 84 LTGKEIEIDIEPTDTIERIKERVE--EKEGI---PPVQQRLIYA----G--KQLADDKTARDY 135 (154)
Q Consensus 84 ~~~~~~~~~v~~~~tv~~LK~~i~--~~~~i---~~~~~~l~~~----g--~~l~d~~~L~~~ 135 (154)
++|+...+.++++.||.++-..++ .+.|+ .++.+-|.+. + ..|+.+.++.+.
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 678888899999999999999998 57774 3445555431 2 467777777764
No 375
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=43.62 E-value=26 Score=25.97 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=39.4
Q ss_pred eeecCCc----eEEEeeCCCchHHHHHHHHhhhcCCC-CCceeEEE--C--C--eecCCCCccccc
Q 040824 81 VKTLTGK----EIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIY--A--G--KQLADDKTARDY 135 (154)
Q Consensus 81 v~~~~~~----~~~~~v~~~~tv~~LK~~i~~~~~i~-~~~~~l~~--~--g--~~l~d~~~L~~~ 135 (154)
|...+|+ ...+.++++.|+.++-..+++..|+. .+.+-|.+ . + ..|+.+.++.+.
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 4444665 88999999999999999999999983 33445554 2 2 256777776543
No 376
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=43.47 E-value=35 Score=20.16 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=23.6
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
+|++...+|....+++.+++|+.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5788888999999999999999885543
No 377
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.60 E-value=53 Score=19.65 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=32.1
Q ss_pred EEEEeC-CCCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEEEEc
Q 040824 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 3 v~v~~~-~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~~ 46 (154)
|.||+- .|+.+.+.+.-.-+..+|..++...+|-+ ..|.|.
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~---ldL~y~ 50 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQS---MDLHYT 50 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSC---EEEEEC
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCe---eeEEEe
Confidence 455554 56889999999999999999999999864 345554
No 378
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=42.25 E-value=60 Score=26.68 Aligned_cols=58 Identities=14% Similarity=0.302 Sum_probs=40.0
Q ss_pred EEEeeCCCchHHHHHHHHhhhcC--CCCCc--------eeEEECCe--e------cCCCCcccccccCCCCEEEEE
Q 040824 89 IEIDIEPTDTIERIKERVEEKEG--IPPVQ--------QRLIYAGK--Q------LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~--i~~~~--------~~l~~~g~--~------l~d~~~L~~~~i~~~~~i~~~ 146 (154)
..+.++.+.|+.++-..++.+.. +.... .+++|... . -+-.++|.++|+.+|+.|.+.
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 45777778899999999988644 32211 34555432 1 123678999999999998875
No 379
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=41.10 E-value=16 Score=20.04 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.0
Q ss_pred CcccccccCCCCEEEEEEeec
Q 040824 130 KTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~p 45 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIAP 45 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 367788888888888876654
No 380
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=39.30 E-value=33 Score=20.24 Aligned_cols=27 Identities=7% Similarity=0.337 Sum_probs=18.7
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCC
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPV 115 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~ 115 (154)
+.+..++.+....+++.+++..+++++
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~ 44 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDAD 44 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGG
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChh
Confidence 567777888999999999999998765
No 381
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=38.19 E-value=62 Score=19.13 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=38.3
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+.+.-++++.-.+++.+..|+.+--.+..++-++.++.....
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 5667778888889999999999999999999999999998776
No 382
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=38.02 E-value=34 Score=20.18 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=35.4
Q ss_pred EEee-CCCchHHHHHHHHhhhcCCCCCceeEEECCe-ecCCCCcccccccCCCCEEEEEEee
Q 040824 90 EIDI-EPTDTIERIKERVEEKEGIPPVQQRLIYAGK-QLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 90 ~~~v-~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~-~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
++-+ +...||.++-.+|....+-.. ..-+.|.-. ..+..+--.++-++++|.|.++.+.
T Consensus 28 pviL~~~GsTv~Dfa~~IH~di~~~f-kyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 28 PVVLPYSRTTVEDFCMKIHKNLIKEF-KYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp CEEEETTSCCHHHHHHHHCTTCTTTE-EEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECC
T ss_pred CEEEecCCCCHHHHHHHHHHHHHhhc-cEEEEecccccCCCEECCCCcEecCCCEEEEEeCC
Confidence 3667 788999999999987665321 111222211 1122333445567899999888663
No 383
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=37.88 E-value=72 Score=23.94 Aligned_cols=56 Identities=13% Similarity=0.062 Sum_probs=39.6
Q ss_pred EEEEe------CCCCEEEEEEeCCCcHHHHHHHHH--hHhCCC---CCCeEEEEc----c--eEeccCceecc
Q 040824 3 IFVKT------LTGKTITLEVESSDTIDNVKAKIQ--DKEGIP---PDQQRLIFA----G--KQLEDGRTLAD 58 (154)
Q Consensus 3 v~v~~------~~~~~~~~~v~~~~tv~~lk~~i~--~~~~~~---~~~q~L~~~----g--~~L~d~~~l~~ 58 (154)
++|++ .+|....+.++.++||.++...+. .+.|+. ++.--|.+. + .+|.++.++++
T Consensus 24 ~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 24 LKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp EEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred EEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 55666 677888999999999999999998 566643 333334331 2 67888877766
No 384
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=37.51 E-value=52 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~ 28 (154)
+|++...+|..+.+++..++|+.+.-.
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa~ 34 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVVV 34 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHH
Confidence 466666688888999999999877543
No 385
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=37.24 E-value=49 Score=19.01 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.7
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhH
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~ 33 (154)
+.+.+.+|-+|.++++-++-+..-|..++..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4567889999999999998888888877755
No 386
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=37.07 E-value=79 Score=20.04 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=48.2
Q ss_pred eeeeeecCCceE-EEeeCCCchHHHHHHHHhhhcCCCCC---ceeE---EECCeecC-CCCcccccccCCCCEEEEEEee
Q 040824 78 MIKVKTLTGKEI-EIDIEPTDTIERIKERVEEKEGIPPV---QQRL---IYAGKQLA-DDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 78 ~i~v~~~~~~~~-~~~v~~~~tv~~LK~~i~~~~~i~~~---~~~l---~~~g~~l~-d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
+|.+...+|..| .+.+...+....+-+..-++.+++.+ +..| +-.|++|. .+..=-.|.+...+...+++|.
T Consensus 29 RVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR~ 108 (140)
T 3kh0_A 29 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKK 108 (140)
T ss_dssp EEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEEE
T ss_pred EEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEee
Confidence 344445567765 48888889888888888888887544 3444 34677663 2222334555566677777777
Q ss_pred cCC
Q 040824 150 RGG 152 (154)
Q Consensus 150 ~gg 152 (154)
+++
T Consensus 109 k~~ 111 (140)
T 3kh0_A 109 RTF 111 (140)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 387
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=36.26 E-value=62 Score=18.60 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=51.3
Q ss_pred EEEEEeCCCCE-EEEEEeCCCcHHHHHHHHHhHh-C--CC--CC-CeEEEEcc--eEeccCceecccccccccceeeee
Q 040824 2 QIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKE-G--IP--PD-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~~~~-~~~~v~~~~tv~~lk~~i~~~~-~--~~--~~-~q~L~~~g--~~L~d~~~l~~~~i~~~~~i~l~~ 71 (154)
.|.-++..+.. .-+.++.++|+.++=+++.... | ++ |. ..+..++| +.+..+.++++-||.+-..|.+..
T Consensus 3 Pl~~~F~gDFV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 3 PIMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEETTCSBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred ceeEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 34555655544 4578899999999999997653 3 32 22 45666888 889999999999999888776543
No 388
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=36.24 E-value=76 Score=19.55 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.8
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhcCCC--------CCceeEE
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKEGIP--------PVQQRLI 120 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~~i~--------~~~~~l~ 120 (154)
....+.+....|+.++-++.-.+.|.+ ++++.|+
T Consensus 20 py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLv 61 (117)
T 2c5l_C 20 PRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLL 61 (117)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEE
T ss_pred CeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEE
Confidence 345688999999999999998887755 5666665
No 389
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=35.88 E-value=37 Score=25.19 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=38.3
Q ss_pred EEEeCCCC----EEEEEEeCCCcHHHHHHHHHhHhCCCCC-CeEEEE--c--c--eEeccCceecc
Q 040824 4 FVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--A--G--KQLEDGRTLAD 58 (154)
Q Consensus 4 ~v~~~~~~----~~~~~v~~~~tv~~lk~~i~~~~~~~~~-~q~L~~--~--g--~~L~d~~~l~~ 58 (154)
+|...+|. ...+.++..+|+.++-..+.++.|+... .=-|.+ . | .+|.++..+++
T Consensus 11 ~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 11 HYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 35555666 8899999999999999999999998421 123333 1 1 35777766654
No 390
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=35.86 E-value=47 Score=23.92 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=28.1
Q ss_pred eeeeeeecCCceEEEeeCC--CchHHHHHHHHhhhcCCCC
Q 040824 77 TMIKVKTLTGKEIEIDIEP--TDTIERIKERVEEKEGIPP 114 (154)
Q Consensus 77 ~~i~v~~~~~~~~~~~v~~--~~tv~~LK~~i~~~~~i~~ 114 (154)
..+.|..++|+...+.++. ++|+.++- +..|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCc
Confidence 5677888899999999999 99999993 4577764
No 391
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=35.25 E-value=78 Score=19.43 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=30.6
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceecc
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~ 58 (154)
.-|+.+.||+++...|++..+++++.-..+| ++.....+.++++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 4588999999999999999998876544444 4433344444443
No 392
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=35.13 E-value=21 Score=19.78 Aligned_cols=18 Identities=6% Similarity=0.230 Sum_probs=9.4
Q ss_pred cccccccCCCCEEEEEEe
Q 040824 131 TARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 131 ~L~~~~i~~~~~i~~~~~ 148 (154)
.|.+.|+.+|+.|.+.-+
T Consensus 30 rL~~lGi~~G~~v~v~~~ 47 (77)
T 3e19_A 30 KLVSMGLTPGATIQVLES 47 (77)
T ss_dssp HHHTTTCSTTCEEEEEEC
T ss_pred HHHHCCCCCCCEEEEEEe
Confidence 445555555555555443
No 393
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.90 E-value=54 Score=21.24 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=19.3
Q ss_pred CCCCEEEEEEeCCCcHHHHHHHH
Q 040824 8 LTGKTITLEVESSDTIDNVKAKI 30 (154)
Q Consensus 8 ~~~~~~~~~v~~~~tv~~lk~~i 30 (154)
.||+.+.+++++++|+.++-...
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHT
T ss_pred ECCEEEEEecCCcCcHHHHHHHc
Confidence 38999999999999998876554
No 394
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=34.78 E-value=20 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=14.6
Q ss_pred CcccccccCCCCEEEEEEeec
Q 040824 130 KTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 29 ~rL~~mGl~pG~~V~V~~~~p 49 (86)
T 2k4y_A 29 RKIMDMGIVRGTEIYIEGKAP 49 (86)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 356777888888887766554
No 395
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=34.75 E-value=79 Score=19.31 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=36.5
Q ss_pred EEEeCCCcHHHHHHHHHhHhCCCCCCeEEEE-cceEeccCceeccccc---ccccceeeeee
Q 040824 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNI---QKESTLHLVLR 72 (154)
Q Consensus 15 ~~v~~~~tv~~lk~~i~~~~~~~~~~q~L~~-~g~~L~d~~~l~~~~i---~~~~~i~l~~~ 72 (154)
.-++.+.||+++...|++..+++++.-..+| ++.....+.++++.-- ..+..+++...
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 4678899999999999999998886644445 4443344445544321 22445555443
No 396
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=40.45 E-value=8.5 Score=23.00 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHH
Q 040824 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 22 tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~ 101 (154)
....+++.+.+..++++ ..+.++.+|.++|+.+=+.+.+.........+.+.. -.+..-.||.+
T Consensus 27 i~~~l~~ila~~l~i~~---------~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~-------~~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPK---------EEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVD-------DELDLLETVDE 90 (103)
Confidence 35567777777776665 345667777888886666665555544333332211 11234467888
Q ss_pred HHHHHhhh
Q 040824 102 IKERVEEK 109 (154)
Q Consensus 102 LK~~i~~~ 109 (154)
|-..+.++
T Consensus 91 l~~~I~~~ 98 (103)
T 2lte_A 91 LFQLVEKH 98 (103)
Confidence 87777654
No 397
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=33.36 E-value=46 Score=18.95 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=27.3
Q ss_pred HHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 103 KERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 103 K~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|+.+-+++++..++.-.+ +.++--..++|.+.|+.+.+.-+.
T Consensus 20 k~~lL~~y~i~~~qLPrI-----~~~DPvar~~G~k~GdVvkI~R~S 61 (78)
T 1hmj_A 20 VEEILKRYNIKIQQLPKI-----YEDDPVIQEIGAKEGDVVRVIRKS 61 (78)
T ss_pred HHHHHHHcCCCHHHCCee-----eCcCHhhHHhCCCCCCEEEEEECC
Confidence 445555677766555443 334445677799999999887554
No 398
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=33.35 E-value=67 Score=18.96 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~ 28 (154)
+|++...+|+...+++..++|+.+.-.
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa~ 33 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLAQ 33 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHH
Confidence 456655688988999999999987543
No 399
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=32.50 E-value=49 Score=18.77 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=27.9
Q ss_pred HHHHhhhcCCCCCceeEEECCeecCCCCcccccccCCCCEEEEEEee
Q 040824 103 KERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 103 K~~i~~~~~i~~~~~~l~~~g~~l~d~~~L~~~~i~~~~~i~~~~~~ 149 (154)
|+.+-+++++..++.-. .+.++--..+||.+.|+.+.+.-+.
T Consensus 22 k~~lL~~y~i~~~qLP~-----I~~~DPvar~~G~k~GdVvkI~R~S 63 (77)
T 1eik_A 22 AKRVLKELDAHPEQLPK-----IKTTDPVAKAIGAKRGDIVKIIRKS 63 (77)
T ss_dssp HHHHHHHTTCCTTTSCC-----CBTTSHHHHGGGCCTTCEEEEEEEE
T ss_pred HHHHHHHcCCCHHHCCe-----eeCcCHhhHHhCCCCCCEEEEEECC
Confidence 44555567776665443 3344445677799999999887655
No 400
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=32.35 E-value=26 Score=19.56 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeeeeeecCCceEEEeeCCCchH
Q 040824 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTI 99 (154)
Q Consensus 20 ~~tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv 99 (154)
..+...+++.+.+..++++... + ..+.++.++.++|+.+=..+.+.........+.+.. . .+....||
T Consensus 4 ~~~~~~l~~il~~~l~~~~~~~-~----~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~--~-----~~~~~~Tv 71 (86)
T 1af8_A 4 LLTTDDLRRALVECAGETDGTD-L----SGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPD--D-----VAGRVDTP 71 (86)
T ss_dssp SSCHHHHHHHHHTTCCCCSCCC-T----TTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCT--T-----TTTTCCSH
T ss_pred HHHHHHHHHHHHHHhCCCcccc-c----ccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCH--H-----HHHcCCCH
Confidence 4577889999999998876310 0 023566678888886666665555444333332211 1 12345688
Q ss_pred HHHHHHHhhh
Q 040824 100 ERIKERVEEK 109 (154)
Q Consensus 100 ~~LK~~i~~~ 109 (154)
+++-..+.++
T Consensus 72 ~~l~~~i~~~ 81 (86)
T 1af8_A 72 RELLDLINGA 81 (86)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 401
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=32.24 E-value=71 Score=18.55 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
+|++...+|....+++.+++|+.+.-..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 4666656788889999999998886544
No 402
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=32.09 E-value=73 Score=18.54 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=29.2
Q ss_pred EEEEEeCCC--CEEEEEEeCCCcHHHHHHHHHhHhCCCC
Q 040824 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 2 ~v~v~~~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~ 38 (154)
+|+|..... +++.+++...+-+..+-+++....++++
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 578877655 6788888888889999999977766654
No 403
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=31.95 E-value=25 Score=19.63 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=11.8
Q ss_pred ccccccCCCCEEEEE
Q 040824 132 ARDYNIEGGSVLHLV 146 (154)
Q Consensus 132 L~~~~i~~~~~i~~~ 146 (154)
-..+.+++|+++|++
T Consensus 7 ~k~v~LkDGstvyiF 21 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVF 21 (74)
T ss_dssp EEEEEBTTSCEEEEE
T ss_pred eeeEecCCCcEEEEE
Confidence 345678999999987
No 404
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=31.83 E-value=78 Score=18.38 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=30.6
Q ss_pred eeeeeecCCceEEEeeCC--CchHHHHHHHHhhhcCCCCCceeEEEC
Q 040824 78 MIKVKTLTGKEIEIDIEP--TDTIERIKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~--~~tv~~LK~~i~~~~~i~~~~~~l~~~ 122 (154)
.+.|.. .|....|.++. +.|-.+|...+...++++ .+++.|-
T Consensus 8 ~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~ 51 (87)
T 2bkf_A 8 TLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL 51 (87)
T ss_dssp EEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE
T ss_pred EEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE
Confidence 344434 67777766655 889999999999999996 4566553
No 405
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.76 E-value=68 Score=20.86 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=31.3
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+.+.|.|+...+=.++|+.++..+++.+....-+
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 127 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEee
Confidence 35899999999999999999999999998888655
No 406
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=31.20 E-value=30 Score=22.22 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.8
Q ss_pred chHHHHHHHHhhhcCCCC--CceeEE--ECCeecCCCCc
Q 040824 97 DTIERIKERVEEKEGIPP--VQQRLI--YAGKQLADDKT 131 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~--~~~~l~--~~g~~l~d~~~ 131 (154)
.+..+|+.+.+..++++. ...+|. ..|..++|+.-
T Consensus 82 ~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeY 120 (145)
T 1ibx_B 82 SCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDY 120 (145)
T ss_dssp SSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhH
Confidence 478999999999999965 466666 46778776543
No 407
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=30.95 E-value=1.6e+02 Score=21.71 Aligned_cols=80 Identities=10% Similarity=0.005 Sum_probs=43.9
Q ss_pred eeeeeeeecceeeeeeecCCceEEEeeCC-CchHHHHHHHHhhhcCC-CCCceeEEECCeec--------CCCCcccccc
Q 040824 67 LHLVLRLRGGTMIKVKTLTGKEIEIDIEP-TDTIERIKERVEEKEGI-PPVQQRLIYAGKQL--------ADDKTARDYN 136 (154)
Q Consensus 67 i~l~~~~~~~~~i~v~~~~~~~~~~~v~~-~~tv~~LK~~i~~~~~i-~~~~~~l~~~g~~l--------~d~~~L~~~~ 136 (154)
+.+.+.......+.|...=.+.-.+.+.+ ..|+.+.-.+.--.+.. ......+..+|+.. .+...-.++-
T Consensus 141 V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~ 220 (359)
T 2j58_A 141 VDVSIAAFRSQKVYVTGEVANSGKQAITNIPLTVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHL 220 (359)
T ss_dssp EEEEEEECCSCEEEEEESBSSCEEEECCSSCCBHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCB
T ss_pred EEEEEccCCceEEEEEceecCCeEEEeCCCCCcHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCccccee
Confidence 33334333444555554333344566666 67777765544322221 34556777777632 2233344567
Q ss_pred cCCCCEEEEE
Q 040824 137 IEGGSVLHLV 146 (154)
Q Consensus 137 i~~~~~i~~~ 146 (154)
+++||+|++-
T Consensus 221 L~~GD~I~Vp 230 (359)
T 2j58_A 221 LYHGDILFIP 230 (359)
T ss_dssp CCTTCEEEEC
T ss_pred ccCCCeEEEe
Confidence 8999998874
No 408
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=30.83 E-value=89 Score=18.74 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=44.0
Q ss_pred eeeeecCCceE-EEeeCCCchHHHHHHHHhhhcCCCC---CceeEE---ECCeecC-CCCcccccccCCCCEEEEEEeec
Q 040824 79 IKVKTLTGKEI-EIDIEPTDTIERIKERVEEKEGIPP---VQQRLI---YAGKQLA-DDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 79 i~v~~~~~~~~-~~~v~~~~tv~~LK~~i~~~~~i~~---~~~~l~---~~g~~l~-d~~~L~~~~i~~~~~i~~~~~~~ 150 (154)
|.+...+|..+ .+.+...+....+-...-++.+++. ++..|. -.|++|. .+..=-.|.+...+...++.|.+
T Consensus 23 Vs~e~~~g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~~~~~~F~LR~k 102 (103)
T 1ef5_A 23 ISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKK 102 (103)
T ss_dssp EEESSCSSCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECSSSCCEESSCCCCTTTTTCCCSCEEEEEEEC
T ss_pred EEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCEEecCCCcceEEEEcCCCCccEEEeeC
Confidence 33334566554 4778888888999888888888753 445554 3466553 22222344555556666666655
Q ss_pred C
Q 040824 151 G 151 (154)
Q Consensus 151 g 151 (154)
|
T Consensus 103 ~ 103 (103)
T 1ef5_A 103 N 103 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 409
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=30.53 E-value=52 Score=19.41 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=32.0
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCee-cCCCCccccc
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ-LADDKTARDY 135 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~-l~d~~~L~~~ 135 (154)
-.+.|+.+.|++++..-|.++..++ ..-+..+..- -..+.++++.
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 3578899999999999999999987 4445444423 3345566554
No 410
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=28.92 E-value=66 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
.+.+. .||+.+.+++++++|+.++-+.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45555 4899999999999999986554
No 411
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=28.63 E-value=72 Score=17.58 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=12.4
Q ss_pred CCCceeEEECCeecCCCC
Q 040824 113 PPVQQRLIYAGKQLADDK 130 (154)
Q Consensus 113 ~~~~~~l~~~g~~l~d~~ 130 (154)
|+....|+.+|+.|..+.
T Consensus 23 p~p~v~W~k~g~~l~~~~ 40 (84)
T 2lu7_A 23 PGGPVRWYKDGERLASQG 40 (84)
T ss_dssp CSTTCEEEETTEECCCCS
T ss_pred CCcEEEEEECCEEccccc
Confidence 445678888888876543
No 412
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.26 E-value=85 Score=20.05 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=30.7
Q ss_pred ceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 87 ~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
+.+.|.|+...+=.++|+.++..+++.+....-+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 113 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTL 113 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 6889999999999999999999999998887654
No 413
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=28.05 E-value=42 Score=19.02 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=16.3
Q ss_pred CcccccccCCCCEEEEEEeec
Q 040824 130 KTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 24 rrL~~mGl~pG~~V~Vi~~ap 44 (83)
T 2lx9_A 24 QKLLSLGMLPGSSFNVVRVAP 44 (83)
T ss_dssp HHHHHSSCCSSSEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 367788888888888886654
No 414
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=28.03 E-value=67 Score=20.87 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=21.3
Q ss_pred CEEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
|.+.+.. +|+.+.+++++++|+.+.-..
T Consensus 10 m~i~~~i-ng~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISATI-NGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEEE-CCEEEEEecCCCCcHHHHHHh
Confidence 3455553 889899999999999886654
No 415
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=27.88 E-value=1.1e+02 Score=18.82 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.4
Q ss_pred chHHHHHHHHhhhc-CCCCCceeEEECC
Q 040824 97 DTIERIKERVEEKE-GIPPVQQRLIYAG 123 (154)
Q Consensus 97 ~tv~~LK~~i~~~~-~i~~~~~~l~~~g 123 (154)
.+...|+.+++..+ ++....+.+.|..
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEEC
Confidence 49999999999999 5666778888864
No 416
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=27.79 E-value=95 Score=20.03 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=31.2
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.+.+.|.|+...+=.++|+.++..+++.+....-+
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl 121 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTL 121 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEee
Confidence 46889999999999999999999999998887654
No 417
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=27.76 E-value=1.7e+02 Score=23.41 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=34.5
Q ss_pred eEEEeeCCCchHHHHHHHHhhhcCCC-CCceeEE--EC--C--eecCCCCcccc
Q 040824 88 EIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLI--YA--G--KQLADDKTARD 134 (154)
Q Consensus 88 ~~~~~v~~~~tv~~LK~~i~~~~~i~-~~~~~l~--~~--g--~~l~d~~~L~~ 134 (154)
...+.+++++||.++-..+++..++. .+-+-|. .. | ..|+.+.++..
T Consensus 23 ~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 23 ASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred eeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 78899999999999999999999973 3334443 33 2 25666667666
No 418
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=27.57 E-value=30 Score=26.44 Aligned_cols=57 Identities=14% Similarity=0.348 Sum_probs=27.7
Q ss_pred EEeeCCCchHHHHHHHHhhhcC--CCCCc--------eeEEECCe--ec------CCCCcccccccCCCCEEEEE
Q 040824 90 EIDIEPTDTIERIKERVEEKEG--IPPVQ--------QRLIYAGK--QL------ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 90 ~~~v~~~~tv~~LK~~i~~~~~--i~~~~--------~~l~~~g~--~l------~d~~~L~~~~i~~~~~i~~~ 146 (154)
.+.++++.|+.++-..++.+.. +.... .+++|... .+ +-+++|.++|+.+|+.|.+.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 4556667788888888888643 32111 34455422 11 23568999999999988764
No 419
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=27.15 E-value=94 Score=17.80 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
+|++...++....+++.+++|+.+.-..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 4556655577788999999999886544
No 420
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=27.12 E-value=74 Score=20.69 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.5
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~ 28 (154)
.+.+. .||+.+.+++++++|+.++-+
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 45555 489999999999999988654
No 421
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=26.92 E-value=65 Score=23.19 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=27.9
Q ss_pred CEEEEEeCCCCEEEEEEeC--CCcHHHHHHHHHhHhCCCC
Q 040824 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~--~~tv~~lk~~i~~~~~~~~ 38 (154)
+++.|...+|....++++. .+|+.++.+. .|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e~----lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIMEG----MRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHTT----SSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHHH----hCcCc
Confidence 4788999999999999998 8999999543 56654
No 422
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=26.63 E-value=62 Score=18.87 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=24.8
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhH
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~ 33 (154)
+.+.+.+|-+|.++++-++-+..-|..++..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4567889999999999888877777777654
No 423
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=26.34 E-value=99 Score=17.83 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=35.7
Q ss_pred CEEEEEeCCCCEEEEEEeC-CCcHHHHHHHHHhH----hCCCC-CCeEE---EE-cceEeccCceeccc
Q 040824 1 MQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDK----EGIPP-DQQRL---IF-AGKQLEDGRTLADY 59 (154)
Q Consensus 1 m~v~v~~~~~~~~~~~v~~-~~tv~~lk~~i~~~----~~~~~-~~q~L---~~-~g~~L~d~~~l~~~ 59 (154)
|+|+|.+- +..+.+-..+ ..||..|-++--.. .+..+ ....+ .+ +|.+|+++..+.+.
T Consensus 3 MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV 70 (85)
T 2ns5_A 3 FKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV 70 (85)
T ss_dssp EEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH
T ss_pred cEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh
Confidence 78999984 5667777755 45899886654332 23322 22222 23 67888888777663
No 424
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=26.09 E-value=42 Score=18.77 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=15.8
Q ss_pred CcccccccCCCCEEEEEEeec
Q 040824 130 KTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~~~~~~~ 150 (154)
+.|.+.|+..|+.|.+.-+.+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p 46 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAP 46 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECT
T ss_pred HHHHHCCCCCCCEEEEEEeCC
Confidence 357778888888888876654
No 425
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=25.78 E-value=1.1e+02 Score=18.12 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=38.1
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEEC
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~ 122 (154)
.|.+.-++++.-.++|.+..|+.+--.+..++-++.++.....-.
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 455667788888999999999999999999999999988877643
No 426
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=25.75 E-value=1e+02 Score=17.89 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk 27 (154)
+|++...+|....+++..++|+.+.-
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999988754
No 427
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=25.73 E-value=1.2e+02 Score=18.62 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk 27 (154)
+|++...+|....+++.+++|+.+.-
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 56777678888899999999998854
No 428
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=25.65 E-value=10 Score=22.47 Aligned_cols=73 Identities=12% Similarity=0.228 Sum_probs=46.3
Q ss_pred cHHHHHHHHHhHhCCCCCCeEEEEcceEeccCceecccccccccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHH
Q 040824 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 22 tv~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~ 101 (154)
....+++.+.+..+++++ .+.++.+|.++|+-+=+.+.+.........+.+.. -.+..-.||.+
T Consensus 18 i~~~l~~ila~~l~v~~~---------~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~-------~~l~~~~TV~~ 81 (100)
T 1vku_A 18 LIAKFVEIASEKMGKDLE---------TVDEENTFKELGFDSIDVIDLVMFFEDEFALRIED-------EEISKIRKVKD 81 (100)
T ss_dssp HHHHHHHHHHHTTCCCCC---------SCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCH-------HHHTTCCBHHH
T ss_pred HHHHHHHHHHHHHCCCHH---------HCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCH-------HHHHcCCCHHH
Confidence 456788888888888763 46777888899886555555554443322222211 02345678999
Q ss_pred HHHHHhhhc
Q 040824 102 IKERVEEKE 110 (154)
Q Consensus 102 LK~~i~~~~ 110 (154)
|-..+.+..
T Consensus 82 L~~~I~~~~ 90 (100)
T 1vku_A 82 LIDIVIKKL 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887654
No 429
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=25.64 E-value=1.1e+02 Score=17.88 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=21.7
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
+|++...+|....+++.+++|+.+.-..
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~~ 29 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAVS 29 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHH
Confidence 4677667888889999999998875543
No 430
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.63 E-value=84 Score=17.47 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhcCCCCCceeEEECCeecCC
Q 040824 99 IERIKERVEEKEGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 99 v~~LK~~i~~~~~i~~~~~~l~~~g~~l~d 128 (154)
+.++-...++..|.||+..++++..-.=++
T Consensus 22 aeE~T~if~evLGcpPgsV~IVi~EV~~en 51 (72)
T 3mb2_B 22 AAEASAIFQRVIGTPPGRLQLIIQIVSPEN 51 (72)
T ss_dssp HHHHHHHHHHHHCCCTTCCEEEEEECCGGG
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEEecCccc
Confidence 455555667777999999999986543333
No 431
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=25.10 E-value=74 Score=20.35 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCcccccccCCCCEEEEEEeecC
Q 040824 127 ADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 127 ~d~~~L~~~~i~~~~~i~~~~~~~g 151 (154)
+|++||.+.+...||-|.+.+-.++
T Consensus 117 dd~kTL~~~rF~iGDyidvaI~pP~ 141 (143)
T 4a6q_A 117 DDSMTLQSQKFQIGDYLDIAITPPN 141 (143)
T ss_dssp TTTCBTGGGTCCTTCEEEEEEECGG
T ss_pred cccccHHHCCCcCCCEEEEEEeCCC
Confidence 5789999999999999998876543
No 432
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.06 E-value=1e+02 Score=20.03 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=28.8
Q ss_pred CEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 11 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
..+.+.++..++=.++|+.++..+++.+...+-
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNT 126 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNT 126 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEe
Confidence 468899999999999999999999998866543
No 433
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=24.98 E-value=87 Score=20.38 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=20.7
Q ss_pred EEEEEeCCCCEEEEEEeCCCcHHHHHHH
Q 040824 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~~~~~~~~v~~~~tv~~lk~~ 29 (154)
.+.+. .||+.+.+++++++|+.++-+.
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 34444 4899999999999999986544
No 434
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.91 E-value=1.1e+02 Score=19.71 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCEEEEEEeCCCcHHHHHHHHHhHhCCCCCCeEE
Q 040824 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 10 ~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~q~L 43 (154)
...+.+.++..++=.++|+.++..+++.+...+-
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNT 120 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNT 120 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEe
Confidence 3568899999999999999999999988766543
No 435
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=24.59 E-value=32 Score=18.89 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=3.9
Q ss_pred eEEEeeC
Q 040824 88 EIEIDIE 94 (154)
Q Consensus 88 ~~~~~v~ 94 (154)
+|.++++
T Consensus 24 tyYInIP 30 (68)
T 3o27_A 24 TFYLLIP 30 (68)
T ss_dssp CEEEEEC
T ss_pred EEEEeCc
Confidence 4555555
No 436
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=23.98 E-value=1.1e+02 Score=17.72 Aligned_cols=56 Identities=4% Similarity=-0.050 Sum_probs=36.9
Q ss_pred EEEeeCCCchHHHHHHHHhhhcCCCCCceeEEECCee-cCCCCcccccc--cCCCCEEEEE
Q 040824 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ-LADDKTARDYN--IEGGSVLHLV 146 (154)
Q Consensus 89 ~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~~-l~d~~~L~~~~--i~~~~~i~~~ 146 (154)
-.+.|+++.|++++..-|.++..+ +..-+..++.- -..+.++++.- -+++..+++.
T Consensus 25 ~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~ 83 (91)
T 3w1s_C 25 SVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVS 83 (91)
T ss_dssp -EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEE
Confidence 357799999999999999999998 55666667653 33455665541 1234455543
No 437
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=23.74 E-value=62 Score=20.11 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=25.9
Q ss_pred chHHHHHHHHhhhcCCCCCceeEEE--CCeecCCCCc
Q 040824 97 DTIERIKERVEEKEGIPPVQQRLIY--AGKQLADDKT 131 (154)
Q Consensus 97 ~tv~~LK~~i~~~~~i~~~~~~l~~--~g~~l~d~~~ 131 (154)
.+..+|+.+.+...+++ +..++.. +|..++|+.-
T Consensus 54 ~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeY 89 (122)
T 1d4b_A 54 ATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDF 89 (122)
T ss_dssp CCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHH
T ss_pred CCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhH
Confidence 36899999999999993 5566654 6888876654
No 438
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=23.69 E-value=1.3e+02 Score=18.19 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=37.1
Q ss_pred eeeeeecCCceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEE
Q 040824 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 78 ~i~v~~~~~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~ 120 (154)
.|.+.-++++.-.++|.+..|+.+--.+.-++-++.++.+...
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 3556667888889999999999999999999999999988776
No 439
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.42 E-value=93 Score=20.10 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=31.4
Q ss_pred CceEEEeeCCCchHHHHHHHHhhhcCCCCCceeEEE
Q 040824 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 86 ~~~~~~~v~~~~tv~~LK~~i~~~~~i~~~~~~l~~ 121 (154)
.+.+.|.|+...+=.++|+.++..+++.+....-+.
T Consensus 89 ~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~ 124 (152)
T 3iz5_X 89 NNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLI 124 (152)
T ss_dssp HSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeE
Confidence 368899999999999999999999999988876553
No 440
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=22.69 E-value=42 Score=19.53 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=13.6
Q ss_pred cCCCCCceeEEECCeecCCC
Q 040824 110 EGIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 110 ~~i~~~~~~l~~~g~~l~d~ 129 (154)
.|.|.-...|+.+|+.+..+
T Consensus 38 ~G~P~p~v~W~k~g~~l~~~ 57 (107)
T 3knb_B 38 LGEPPPVVVWEKGGQQLAAS 57 (107)
T ss_dssp EEESCCEEEEEETTEECCCC
T ss_pred EEecCCEEEEEECcccccce
Confidence 35566677888888777644
No 441
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=22.28 E-value=1.9e+02 Score=19.70 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=37.8
Q ss_pred cccccccceeeeeeeecceeeeeeecCCceEEEe-eCCCchHHHHHHHHhhhcCCCCCceeEEECCe
Q 040824 59 YNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 59 ~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~-v~~~~tv~~LK~~i~~~~~i~~~~~~l~~~g~ 124 (154)
-++..+..+++++.-.+....+|+....+...+. .+...+..-+|+.+....+...+..+-...|-
T Consensus 50 h~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~~~~~~~~~~~pGi 116 (208)
T 2qwv_A 50 QSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVGMGKEQTRVVQPGL 116 (208)
T ss_dssp SSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTTCCTTCEEEEETTE
T ss_pred ccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccccccccccccCCCE
Confidence 4677888888888765444555555444444455 56666777778888775554433333334443
No 442
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.28 E-value=80 Score=15.34 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=11.6
Q ss_pred HHHHHHHHhHhCCCCC
Q 040824 24 DNVKAKIQDKEGIPPD 39 (154)
Q Consensus 24 ~~lk~~i~~~~~~~~~ 39 (154)
.+|-..+++++|+++.
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4566677888998863
No 443
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=22.11 E-value=2.3e+02 Score=23.21 Aligned_cols=59 Identities=10% Similarity=0.208 Sum_probs=37.3
Q ss_pred EEEEEeCCCcHHHHHHHHHhHhC--CCCCC--------eEEEEcce--E----e--ccCceecccccccccceeeee
Q 040824 13 ITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q----L--EDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 13 ~~~~v~~~~tv~~lk~~i~~~~~--~~~~~--------q~L~~~g~--~----L--~d~~~l~~~~i~~~~~i~l~~ 71 (154)
..+.++.+.|+.++-+.+..+.. +..-. ..++|... . . +.+++|++.++.+|+.+.+.-
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred EEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 45778778899999999987543 32211 23344311 1 1 225689999999998876643
No 444
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=21.24 E-value=1.2e+02 Score=16.78 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=30.4
Q ss_pred hhhcCCCCCceeEEECCeecCCC--CcccccccCCCCEEEEEEeecCCC
Q 040824 107 EEKEGIPPVQQRLIYAGKQLADD--KTARDYNIEGGSVLHLVLALRGGG 153 (154)
Q Consensus 107 ~~~~~i~~~~~~l~~~g~~l~d~--~~L~~~~i~~~~~i~~~~~~~gg~ 153 (154)
+..-|+.+.+.-+..+|..+.+. ..+..+--..+..+.+.+...+..
T Consensus 41 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~ 89 (90)
T 2he4_A 41 AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 89 (90)
T ss_dssp HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCCC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 34558888999888999988764 223222112378888877665543
No 445
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=20.69 E-value=31 Score=18.82 Aligned_cols=71 Identities=13% Similarity=0.291 Sum_probs=40.5
Q ss_pred HHHHHHHHHhHhCCCCCCeEEEEcceEeccCcee-cccccccccceeeeeeeecceeeeeeecCCceEEEeeCCCchHHH
Q 040824 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 23 v~~lk~~i~~~~~~~~~~q~L~~~g~~L~d~~~l-~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tv~~ 101 (154)
...+++.+.+..+++++ .+.++.++ .++|+.+-..+.+.........+.+.. -.+....||.+
T Consensus 9 ~~~l~~~i~~~l~~~~~---------~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~-------~~~~~~~Tv~~ 72 (82)
T 2cnr_A 9 VAGLAEIVNEIAGIPVE---------DVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPD-------DDVKNLKTVGD 72 (82)
T ss_dssp HHHHHHHHHHHSCCCTT---------TCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCG-------GGGGTCSBHHH
T ss_pred HHHHHHHHHHHhCCCHH---------HCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCH-------HHHHHcCCHHH
Confidence 45677777777777652 34666677 588875555554444333222222211 02345678888
Q ss_pred HHHHHhhh
Q 040824 102 IKERVEEK 109 (154)
Q Consensus 102 LK~~i~~~ 109 (154)
+-..+.++
T Consensus 73 l~~~i~~~ 80 (82)
T 2cnr_A 73 ATKYILDH 80 (82)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 88887654
No 446
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=20.63 E-value=1.6e+02 Score=25.58 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.9
Q ss_pred EEEEeCCCCEEEEEEeCCCcHHHHHHHHHhHh
Q 040824 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (154)
Q Consensus 3 v~v~~~~~~~~~~~v~~~~tv~~lk~~i~~~~ 34 (154)
|..-.++|-...++++.++|+.++|+.+.+..
T Consensus 54 vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A 85 (1092)
T 2y3a_A 54 VDFLLPTGIYIQLEVPREATISYIKQMLWKQV 85 (1092)
T ss_dssp EEEECTTCCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEECCCceEEEEEecCcccHHHHHHHHHHHH
Confidence 34455689999999999999999999998763
No 447
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.35 E-value=64 Score=15.49 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=10.1
Q ss_pred CchHHHHHHHHhhh
Q 040824 96 TDTIERIKERVEEK 109 (154)
Q Consensus 96 ~~tv~~LK~~i~~~ 109 (154)
+.||.+||.-|++.
T Consensus 2 sntvkelknyiqel 15 (46)
T 3he4_B 2 SNTVKELKNYIQEL 15 (46)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 56888888888764
Done!