Query 040827
Match_columns 499
No_of_seqs 205 out of 1208
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 12:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1311 DHHC-type Zn-finger pr 100.0 4.5E-34 9.8E-39 286.6 8.2 130 10-139 108-241 (299)
2 PF01529 zf-DHHC: DHHC palmito 100.0 3.4E-33 7.4E-38 256.7 9.3 131 9-139 42-173 (174)
3 KOG1315 Predicted DHHC-type Zn 100.0 2.6E-31 5.7E-36 269.3 8.4 127 13-140 107-233 (307)
4 COG5273 Uncharacterized protei 100.0 9.8E-29 2.1E-33 251.4 10.9 141 9-150 103-243 (309)
5 KOG1313 DHHC-type Zn-finger pr 99.9 9E-29 2E-33 244.7 4.6 134 11-144 98-250 (309)
6 KOG1314 DHHC-type Zn-finger pr 99.9 1.3E-26 2.8E-31 235.5 2.6 128 15-142 91-229 (414)
7 KOG1312 DHHC-type Zn-finger pr 99.9 1.3E-24 2.9E-29 216.3 3.9 135 5-139 138-290 (341)
8 KOG0509 Ankyrin repeat and DHH 99.8 7.3E-21 1.6E-25 205.1 3.3 129 11-146 415-560 (600)
9 KOG1311 DHHC-type Zn-finger pr 94.5 0.046 9.9E-07 55.6 4.7 42 28-69 112-164 (299)
10 PF01529 zf-DHHC: DHHC palmito 94.4 0.18 4E-06 46.5 8.0 33 26-58 45-77 (174)
11 COG5273 Uncharacterized protei 92.3 0.42 9.1E-06 49.7 7.5 122 11-143 119-248 (309)
12 KOG0509 Ankyrin repeat and DHH 78.2 2.5 5.5E-05 47.7 4.4 57 13-70 323-380 (600)
13 PRK04136 rpl40e 50S ribosomal 78.0 0.9 1.9E-05 35.3 0.6 29 9-37 8-36 (48)
14 KOG1315 Predicted DHHC-type Zn 70.7 17 0.00037 38.2 8.0 32 28-59 108-139 (307)
15 PF13240 zinc_ribbon_2: zinc-r 69.1 2.5 5.5E-05 27.8 1.0 21 17-37 1-21 (23)
16 COG1552 RPL40A Ribosomal prote 56.6 2 4.3E-05 33.6 -1.4 29 9-37 8-36 (50)
17 PF12773 DZR: Double zinc ribb 55.6 9.9 0.00022 28.5 2.2 38 12-49 9-49 (50)
18 PF08972 DUF1902: Domain of un 54.3 7.2 0.00016 31.2 1.3 15 399-413 4-18 (54)
19 PF13248 zf-ribbon_3: zinc-rib 53.3 7.1 0.00015 26.2 1.0 22 16-37 3-24 (26)
20 KOG1314 DHHC-type Zn-finger pr 51.0 22 0.00048 38.2 4.6 34 11-44 101-134 (414)
21 PTZ00303 phosphatidylinositol 45.3 13 0.00028 43.6 2.1 22 16-37 461-489 (1374)
22 PRK15103 paraquat-inducible me 44.3 1.5E+02 0.0032 32.5 9.8 32 14-45 220-251 (419)
23 PF15232 DUF4585: Domain of un 44.2 20 0.00044 30.4 2.6 18 397-414 29-46 (75)
24 TIGR00155 pqiA_fam integral me 40.6 1.7E+02 0.0037 31.8 9.5 31 15-45 215-246 (403)
25 PF01363 FYVE: FYVE zinc finge 38.6 15 0.00033 29.2 1.0 26 14-39 8-35 (69)
26 PF01020 Ribosomal_L40e: Ribos 38.5 17 0.00036 28.9 1.1 26 13-38 15-42 (52)
27 PRK15103 paraquat-inducible me 35.7 2.7E+02 0.0058 30.5 10.1 31 14-44 9-45 (419)
28 KOG1842 FYVE finger-containing 35.4 8.9 0.00019 42.1 -1.1 25 14-38 179-205 (505)
29 TIGR02484 CitB CitB domain pro 35.3 1.4E+02 0.0031 32.3 7.8 15 30-48 48-62 (372)
30 PF10571 UPF0547: Uncharacteri 35.0 22 0.00047 24.2 1.1 22 16-37 1-22 (26)
31 PRK15033 tricarballylate utili 34.3 99 0.0021 33.7 6.5 14 31-48 68-81 (389)
32 PF06906 DUF1272: Protein of u 33.6 18 0.00039 29.2 0.7 37 16-55 6-50 (57)
33 COG4068 Uncharacterized protei 33.4 34 0.00073 28.0 2.1 19 29-47 8-26 (64)
34 PF10624 TraS: Plasmid conjuga 32.3 3.9E+02 0.0085 25.4 9.1 37 104-140 72-109 (164)
35 PF12773 DZR: Double zinc ribb 30.8 32 0.00069 25.7 1.6 23 14-36 28-50 (50)
36 TIGR00155 pqiA_fam integral me 30.7 3.9E+02 0.0084 29.1 10.3 32 15-46 13-50 (403)
37 PF09889 DUF2116: Uncharacteri 30.5 49 0.0011 26.9 2.6 18 16-33 4-21 (59)
38 PF14015 DUF4231: Protein of u 30.0 2E+02 0.0044 24.5 6.7 18 127-144 78-95 (112)
39 PF15232 DUF4585: Domain of un 28.5 49 0.0011 28.2 2.4 31 399-434 9-42 (75)
40 PRK14559 putative protein seri 27.3 53 0.0012 37.9 3.3 43 11-55 11-53 (645)
41 PRK13794 hypothetical protein; 26.6 26 0.00056 38.8 0.6 30 1-37 1-30 (479)
42 PHA02898 virion envelope prote 26.6 2.1E+02 0.0045 25.3 5.9 33 100-135 46-79 (92)
43 PF06143 Baculo_11_kDa: Baculo 26.2 1.1E+02 0.0024 26.6 4.2 36 107-142 39-74 (84)
44 KOG1313 DHHC-type Zn-finger pr 25.3 1.4E+02 0.0031 31.4 5.5 51 13-74 114-164 (309)
45 PHA02680 ORF090 IMV phosphoryl 25.0 1.7E+02 0.0037 25.7 5.1 35 100-137 47-81 (91)
46 smart00064 FYVE Protein presen 23.1 52 0.0011 26.0 1.6 25 15-39 10-36 (68)
47 PF09788 Tmemb_55A: Transmembr 22.9 1.4E+02 0.003 30.9 4.9 26 53-78 189-215 (256)
48 PF08600 Rsm1: Rsm1-like; Int 22.1 48 0.001 28.6 1.3 11 44-54 56-66 (91)
49 KOG3183 Predicted Zn-finger pr 22.0 39 0.00084 34.6 0.8 11 40-50 39-49 (250)
50 PF14800 DUF4481: Domain of un 21.1 3.4E+02 0.0074 28.8 7.4 17 118-134 111-127 (308)
51 PRK00432 30S ribosomal protein 21.0 47 0.001 25.8 0.9 34 4-37 8-45 (50)
No 1
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=100.00 E-value=4.5e-34 Score=286.63 Aligned_cols=130 Identities=29% Similarity=0.449 Sum_probs=107.0
Q ss_pred ccccCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEec
Q 040827 10 RMLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFVD 89 (499)
Q Consensus 10 ~~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~~ 89 (499)
+...+++||.+|+.++|+|||||++||+||+||||||+|+|||||++|||+|++|+++..+++++.+++..+.+......
T Consensus 108 ~~~~~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~~~~l~~i~~~~~~~~~~~~~~~~ 187 (299)
T KOG1311|consen 108 GIQVEWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLFYLALGVLLALAFLFYELLQRADN 187 (299)
T ss_pred CcccceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34557999999999999999999999999999999999999999999999999999999999988888777765543322
Q ss_pred CCCc----hhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHh
Q 040827 90 KKGT----ENHITERLGAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVA 139 (499)
Q Consensus 90 ~~~~----~~~i~~~Lgil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~ 139 (499)
.... .......+.+++++++++++++++.|+++|+++|.+|+||+|+++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~ 241 (299)
T KOG1311|consen 188 LKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKS 241 (299)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhc
Confidence 2211 1122233335666788888888999999999999999999999876
No 2
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=100.00 E-value=3.4e-33 Score=256.75 Aligned_cols=131 Identities=29% Similarity=0.487 Sum_probs=107.6
Q ss_pred cccccCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEe
Q 040827 9 RRMLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFV 88 (499)
Q Consensus 9 ~~~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~ 88 (499)
+....+.+||.+|+.+||+|+|||+.||+||.+|||||+|+|||||.+|||+|++|+++..+++++.+...+..++....
T Consensus 42 ~~~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHHC~w~~~cIG~~N~~~F~~fl~~~~~~~~~~~~~~~~~~~~~~~ 121 (174)
T PF01529_consen 42 DDENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHHCPWLGNCIGRRNHRYFLLFLLYLCLYCLYFFILSLYYLVRYIP 121 (174)
T ss_pred cccCCCCEECcccCCcCCCcceeccccccccccccccchhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999999999999999999999999999999999999988887777776655433
Q ss_pred cCCCchhhhhhhH-hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHh
Q 040827 89 DKKGTENHITERL-GAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVA 139 (499)
Q Consensus 89 ~~~~~~~~i~~~L-gil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~ 139 (499)
............+ .+++++++++++++++.|+++|+++|.+|+||+|.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 122 SISFSSFWIFSNFSSIFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 3322221211111 15666777888889999999999999999999999875
No 3
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=99.97 E-value=2.6e-31 Score=269.32 Aligned_cols=127 Identities=26% Similarity=0.426 Sum_probs=103.0
Q ss_pred cCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEecCCC
Q 040827 13 YSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFVDKKG 92 (499)
Q Consensus 13 ~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~~~~~ 92 (499)
...+||.+|+.+||+|+|||++|++||++|||||+|+|||||.+|||+|++|++|+.+++++.++..+..+...+ ....
T Consensus 107 g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~lv~~~~~~~~~~-~~~~ 185 (307)
T KOG1315|consen 107 GAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVLVTTLIGFTKYF-QGGA 185 (307)
T ss_pred CCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc
Confidence 478999999999999999999999999999999999999999999999999999999999777666655555443 1111
Q ss_pred chhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHhh
Q 040827 93 TENHITERLGAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAM 140 (499)
Q Consensus 93 ~~~~i~~~Lgil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~~ 140 (499)
..........+++.++++.+++.+++|+++|++||++|+||+|.....
T Consensus 186 ~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~ 233 (307)
T KOG1315|consen 186 GPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSP 233 (307)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccc
Confidence 111222233355667777788888889999999999999999987553
No 4
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=99.95 E-value=9.8e-29 Score=251.35 Aligned_cols=141 Identities=25% Similarity=0.386 Sum_probs=109.7
Q ss_pred cccccCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEe
Q 040827 9 RRMLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFV 88 (499)
Q Consensus 9 ~~~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~ 88 (499)
..+....+||.+|+.+||+|||||+.||+||++|||||+|+|||||.+|||+|++|+++..+..++.+....+.+...+.
T Consensus 103 ~~~~~~~~~C~~C~~~KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~ 182 (309)
T COG5273 103 DGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNYRFFYQFLLYTILVALVVLLSTAYYIAGIFS 182 (309)
T ss_pred cCccccceeccccccccCCCCccchhhcchhhccCccCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34667899999999999999999999999999999999999999999999999999999988777777766666554443
Q ss_pred cCCCchhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHhhhccCCCCCCC
Q 040827 89 DKKGTENHITERLGAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRTQSEPPGPS 150 (499)
Q Consensus 89 ~~~~~~~~i~~~Lgil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~~R~~~~~~~~~ 150 (499)
........+.. +...+..+++.+++.+..++.++.+++..|.|++|.+...|..+......
T Consensus 183 ~~~~~~~~~~~-li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~ 243 (309)
T COG5273 183 IRHDTSLAICF-LIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFP 243 (309)
T ss_pred ccCChHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccc
Confidence 33222222111 11223455666677778899999999999999999998887776544333
No 5
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.95 E-value=9e-29 Score=244.70 Aligned_cols=134 Identities=25% Similarity=0.347 Sum_probs=103.2
Q ss_pred cccCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEecC
Q 040827 11 MLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFVDK 90 (499)
Q Consensus 11 ~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~~~ 90 (499)
.++...||.+|+.+|+||+|||+.||+||++|||||||+|||||.+|||+|++|++|+.+.+.+...++.+.+....-..
T Consensus 98 ~~~~~SfC~KC~~pK~prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHryFFlFl~~ltlat~~~~i~~~~~w~~~le~~ 177 (309)
T KOG1313|consen 98 GLENDSFCNKCNYPKSPRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRYFFLFLFYLTLATSYAAIMCVYTWIDHLEPI 177 (309)
T ss_pred CCccccHHhhcCCCCCCCcchhhHHhhHhhccccCCchhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 45678899999999999999999999999999999999999999999999999999999999887666554333211111
Q ss_pred CCch-------------------hhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHhhhccC
Q 040827 91 KGTE-------------------NHITERLGAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRTQS 144 (499)
Q Consensus 91 ~~~~-------------------~~i~~~Lgil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~~R~~~ 144 (499)
.+.. ..+...-++.+.+++..+.+.++.|..+|.++|.+|.|.+|+...++..+
T Consensus 178 ~~~tay~~d~~h~~Pp~~i~r~~~~i~~t~~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k 250 (309)
T KOG1313|consen 178 EEITAYASDVAHVAPPPSILRVYKNITRTSIANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERK 250 (309)
T ss_pred hhcccccCcccccCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhH
Confidence 1100 01111111445566777778888999999999999999999987665543
No 6
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.92 E-value=1.3e-26 Score=235.47 Aligned_cols=128 Identities=23% Similarity=0.308 Sum_probs=92.7
Q ss_pred cccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHH-------HHHHhheeeE--
Q 040827 15 AHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVE-------FGVGVAVLVR-- 85 (499)
Q Consensus 15 ~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~-------l~v~i~vl~~-- 85 (499)
.+||..|+-+|+||||||+.|||||.+|||||||+|||||..||.+|+.||++..+.|+=. .+-+++..+.
T Consensus 91 lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~~~ 170 (414)
T KOG1314|consen 91 LQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWYIK 170 (414)
T ss_pred HHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999999999999888754321 1122222210
Q ss_pred EEecCCC--chhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHhhhc
Q 040827 86 CFVDKKG--TENHITERLGAICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRT 142 (499)
Q Consensus 86 ~~~~~~~--~~~~i~~~Lgil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~~R~ 142 (499)
+-..... .......+..++.+.+++...+.++.||+.|+..|++|+|-+|.+.-.++
T Consensus 171 ~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka 229 (414)
T KOG1314|consen 171 YGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKA 229 (414)
T ss_pred cccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 0000000 01111112224455566677788889999999999999999998874444
No 7
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.90 E-value=1.3e-24 Score=216.33 Aligned_cols=135 Identities=21% Similarity=0.305 Sum_probs=91.4
Q ss_pred cccccccccCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhhe-e
Q 040827 5 YNQERRMLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAV-L 83 (499)
Q Consensus 5 ~e~e~~~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~v-l 83 (499)
|+.|+..+....-|++|+++||.|||||+.||+||+||||||.|+|||||.+|+|+|++|+++....+.+++.-..+. +
T Consensus 138 ypYDy~if~k~~kCSTCki~KPARSKHCsiCNrCV~rfDHHCiWiNNCIG~~N~ryF~lFLL~~i~l~~yaivrlgfi~l 217 (341)
T KOG1312|consen 138 YPYDYVIFPKNVKCSTCKIRKPARSKHCSICNRCVHRFDHHCIWINNCIGAWNIRYFLLFLLTLISLATYAIVRLGFIVL 217 (341)
T ss_pred cCccceeecCCCccccccCCCccccccchHHHHHHHHhccceEeeecccccchHHHHHHHHHHHHHHHHHHHHHHHheeh
Confidence 567777777779999999999999999999999999999999999999999999999999998866666654322222 1
Q ss_pred eEEEecCCC--------c-hhhhhhhHh-hhHHH------HHH-HHHHHHHHHHHHHHHHHHcCcchHHHHHh
Q 040827 84 VRCFVDKKG--------T-ENHITERLG-AICTA------VSF-LATVPLGELFFFHMILIRKGITTYEYVVA 139 (499)
Q Consensus 84 ~~~~~~~~~--------~-~~~i~~~Lg-il~ll------Lai-l~~I~lg~Lf~fHl~LI~rNiTT~E~i~~ 139 (499)
......... . ...+..... ++..+ ++. ...-++++..++-+|+..+|.|+.|+...
T Consensus 218 n~~sdl~q~v~ilt~~~g~~ks~~~L~~yl~la~~~~v~~l~~~~~~~~~~~Y~~f~~y~~~t~~~~~~W~~~ 290 (341)
T KOG1312|consen 218 NVMSDLYQEVYILTLGHGHVKSTVFLIQYLFLAFPRIVFMLGFVVVLSFLGGYLLFVLYLAATNQTTNEWYRG 290 (341)
T ss_pred hhccccchheeeeeeeecchhhHHHHHHHHHHHhccceeeeehhhhhhHhHHHHHHHHHHHhccCCchhhhcc
Confidence 111000000 0 001111100 00110 111 12233566777889999999999998865
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.81 E-value=7.3e-21 Score=205.08 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=88.9
Q ss_pred cccCc-ccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEec
Q 040827 11 MLYSA-HYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFVD 89 (499)
Q Consensus 11 ~~~~~-rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~~ 89 (499)
+++.. +||.+|.+.||.|||||++||+||.||||||||++||||.+||++|+.|++.....+.+.+....+++...-..
T Consensus 415 kf~~en~FC~~clirKp~rSkhc~vcnrcVarfDHhCPwi~ncVG~kNh~~F~~Fl~~l~~~~~~~l~~~~~y~~~~~~~ 494 (600)
T KOG0509|consen 415 KFDLENRFCLTCLIRKPLRSKHCSVCNRCVARFDHHCPWIGNCVGLKNHRLFVFFLLTLLTVIVFYLYLCLYYIMNLENA 494 (600)
T ss_pred cccccccceeeeeeecCCccchhhhhHHHHhccccCCCccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 44444 79999999999999999999999999999999999999999999999999888777777766666655421100
Q ss_pred CCCchhhhhhhHhhhHHHHHHHH--------H-----H--H-HHHHHHHHHHHHHcCcchHHHHHhhhccCCC
Q 040827 90 KKGTENHITERLGAICTAVSFLA--------T-----V--P-LGELFFFHMILIRKGITTYEYVVAMRTQSEP 146 (499)
Q Consensus 90 ~~~~~~~i~~~Lgil~llLail~--------~-----I--~-lg~Lf~fHl~LI~rNiTT~E~i~~~R~~~~~ 146 (499)
.......+ ..+..+.. . . + ....-+.|...++.++||+|.++..|.+...
T Consensus 495 ----~~~~~~~l---~~~~~~~~~~~~~~~~~~n~~~~~t~~~~~~~~~~~~~~c~~~tt~e~~n~~r~~~~~ 560 (600)
T KOG0509|consen 495 ----STIYVGFL---IAVQAFRIPKPVTGNLLGNEDLNPTWGSTSTKCQHYNCACLHLTTNEQINVKRYEHLG 560 (600)
T ss_pred ----HHHHHHHH---HHHHHHhCCccceeeeeeccccccccccccccccccceeeecccHHHHHHHHHhhccc
Confidence 01111111 11111110 0 0 0 0111234455689999999999988886553
No 9
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=94.52 E-value=0.046 Score=55.61 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=35.6
Q ss_pred CCccCCCCCceecCCCcccccccccccccc-----------HHHHHHHHHHHH
Q 040827 28 FSKHCRSCDKCVDGFDHHCRWLNNCVGRKN-----------YITFVCLMAASL 69 (499)
Q Consensus 28 RShHCsvCnrCVlrfDHHCpWLgNCIG~rN-----------yr~FllFL~y~l 69 (499)
+.++|..|+..+..+-|||..-|+||-+.- ++.+-.|+.+.+
T Consensus 112 ~~~~C~~C~~~rPpRs~HCsvC~~CV~rfDHHC~WvnnCVG~rNyr~F~~f~~ 164 (299)
T KOG1311|consen 112 EWKYCDTCQLYRPPRSSHCSVCNNCVLRFDHHCPWLNNCIGERNYRYFVLFLF 164 (299)
T ss_pred ceEEcCcCcccCCCCcccchhhcccccccCCCCCCccceECCCchHHHHHHHH
Confidence 379999999999999999999999998775 466777875555
No 10
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=94.40 E-value=0.18 Score=46.45 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=18.7
Q ss_pred CCCCccCCCCCceecCCCccccccccccccccH
Q 040827 26 RKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNY 58 (499)
Q Consensus 26 PpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNy 58 (499)
....++|..|+.=..-+-|||.+.+.||-+..|
T Consensus 45 ~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DH 77 (174)
T PF01529_consen 45 NGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDH 77 (174)
T ss_pred CCCCEECcccCCcCCCcceeccccccccccccc
Confidence 344555666655555555666666666655543
No 11
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=92.30 E-value=0.42 Score=49.69 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=72.4
Q ss_pred cccCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhheeeEEEecC
Q 040827 11 MLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIVEFGVGVAVLVRCFVDK 90 (499)
Q Consensus 11 ~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~~l~v~i~vl~~~~~~~ 90 (499)
+-+..++|..|+.=....=|||..-|+||-+..| +=.-.|++++.+..+..++....-+..+...-...
T Consensus 119 KP~RS~HC~~Cn~CV~k~DHHC~Wi~nCVG~~N~-----------r~F~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (309)
T COG5273 119 KPPRSHHCSICNRCVLKFDHHCPWINNCVGFRNY-----------RFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDT 187 (309)
T ss_pred cCCCCccchhhcchhhccCccCcccccccCcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCh
Confidence 3466789999999999999999999999987655 44566777775554444444333333333221111
Q ss_pred CCc-hhhhh--hhHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHhhhcc
Q 040827 91 KGT-ENHIT--ERLG-----AICTAVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRTQ 143 (499)
Q Consensus 91 ~~~-~~~i~--~~Lg-----il~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~~R~~ 143 (499)
... ...+. ..++ ++..++......++..+..+.++.+.++.++.|...-.|..
T Consensus 188 ~~~~~~li~~~~~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~ 248 (309)
T COG5273 188 SLAICFLIFGCSLLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRES 248 (309)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccC
Confidence 111 11111 1222 22222333334444566778889999999999977666554
No 12
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=78.17 E-value=2.5 Score=47.66 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=47.3
Q ss_pred cCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHH-HHHHHHHHH
Q 040827 13 YSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITF-VCLMAASLV 70 (499)
Q Consensus 13 ~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~F-llFL~y~lL 70 (499)
.-...|..|....+.+-.+|..|-.|+..|++||.|+. ||+.+|...| +.|+++.++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fw~~~~w~~-~i~~~~~~~~~~~~i~~~l~ 380 (600)
T KOG0509|consen 323 VLTCLCATRKIVGFLLRPPLLSGFFLSTLFWFYYFWFS-KITPYTLFDFHYCFIISVLA 380 (600)
T ss_pred hhheeccchhhccccccchhHHHHHHHHHHHHHHhhhe-eccchhhhhhHHHHHHHHHH
Confidence 44567899999999999999999999999999999999 9999997755 444444433
No 13
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=78.05 E-value=0.9 Score=35.33 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.8
Q ss_pred cccccCcccccccccccCCCCccCCCCCc
Q 040827 9 RRMLYSAHYAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 9 ~~~~~~~rfC~tC~~~KPpRShHCsvCnr 37 (499)
+....+..+|..|...-|+++..|+.||.
T Consensus 8 ~k~~~~k~ICrkC~ARnp~~A~~CRKCg~ 36 (48)
T PRK04136 8 EKRVFNKKICMRCNARNPWRATKCRKCGY 36 (48)
T ss_pred HHHhhcccchhcccCCCCccccccccCCC
Confidence 34455789999999999999999998875
No 14
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=70.73 E-value=17 Score=38.19 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=28.1
Q ss_pred CCccCCCCCceecCCCccccccccccccccHH
Q 040827 28 FSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYI 59 (499)
Q Consensus 28 RShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr 59 (499)
+.+.|..|+.-...+-|||...+.||.+.-|-
T Consensus 108 ~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHH 139 (307)
T KOG1315|consen 108 AVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHH 139 (307)
T ss_pred CceeecccccccCCccccchhhhhhhhccccC
Confidence 67889999999999999999999999887643
No 15
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=69.06 E-value=2.5 Score=27.84 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.9
Q ss_pred cccccccccCCCCccCCCCCc
Q 040827 17 YAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 17 fC~tC~~~KPpRShHCsvCnr 37 (499)
||..|....++.++.|..||.
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCcCcchhhhCC
Confidence 699999999999999999985
No 16
>COG1552 RPL40A Ribosomal protein L40E [Translation, ribosomal structure and biogenesis]
Probab=56.55 E-value=2 Score=33.61 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=24.8
Q ss_pred cccccCcccccccccccCCCCccCCCCCc
Q 040827 9 RRMLYSAHYAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 9 ~~~~~~~rfC~tC~~~KPpRShHCsvCnr 37 (499)
+..+.+.+.|..|+..-|+++.-|+.|+.
T Consensus 8 ~~r~~~kkIC~rC~Arnp~~A~kCRkC~~ 36 (50)
T COG1552 8 EKRLFNKKICRRCYARNPPRATKCRKCGY 36 (50)
T ss_pred HHHHhhHHHHHHhcCCCCcchhHHhhccC
Confidence 44566789999999999999999998865
No 17
>PF12773 DZR: Double zinc ribbon
Probab=55.60 E-value=9.9 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=29.5
Q ss_pred ccCcccccccccccC---CCCccCCCCCceecCCCcccccc
Q 040827 12 LYSAHYAMLRYMIVR---KFSKHCRSCDKCVDGFDHHCRWL 49 (499)
Q Consensus 12 ~~~~rfC~tC~~~KP---pRShHCsvCnrCVlrfDHHCpWL 49 (499)
-.+.+||..|....+ ....+|..|+.=+...+.+|++-
T Consensus 9 ~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~~~fC~~C 49 (50)
T PF12773_consen 9 PDDAKFCPHCGTPLPPPDQSKKICPNCGAENPPNAKFCPNC 49 (50)
T ss_pred CccccCChhhcCChhhccCCCCCCcCCcCCCcCCcCccCcc
Confidence 345789999988777 34677999999888888888753
No 18
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=54.30 E-value=7.2 Score=31.16 Aligned_cols=15 Identities=53% Similarity=1.059 Sum_probs=12.6
Q ss_pred ceeecCCCCceeecC
Q 040827 399 SVFWDPEAGRFVSSS 413 (499)
Q Consensus 399 sv~wd~eagr~vs~~ 413 (499)
..+||+|||-||+.+
T Consensus 4 ~a~wD~EA~VWvA~s 18 (54)
T PF08972_consen 4 RAFWDEEAGVWVATS 18 (54)
T ss_dssp EEEEETTTTEEEEE-
T ss_pred EEEEcCCCCEEEEec
Confidence 478999999999875
No 19
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=53.27 E-value=7.1 Score=26.18 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=18.2
Q ss_pred ccccccccccCCCCccCCCCCc
Q 040827 16 HYAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 16 rfC~tC~~~KPpRShHCsvCnr 37 (499)
++|..|....++..+.|..||.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~ 24 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGA 24 (26)
T ss_pred CCCcccCCcCCcccccChhhCC
Confidence 5788998888888888888874
No 20
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=51.04 E-value=22 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.4
Q ss_pred cccCcccccccccccCCCCccCCCCCceecCCCc
Q 040827 11 MLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDH 44 (499)
Q Consensus 11 ~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDH 44 (499)
+...-+.|.+|+.=+-+=-|||.--+.||--..|
T Consensus 101 KapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh 134 (414)
T KOG1314|consen 101 KAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANH 134 (414)
T ss_pred CCCccccchHHHHHHHhhccCCcchhhccccccc
Confidence 4466778999998888888999999999875544
No 21
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=45.32 E-value=13 Score=43.57 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=17.9
Q ss_pred ccccccccccC-------CCCccCCCCCc
Q 040827 16 HYAMLRYMIVR-------KFSKHCRSCDK 37 (499)
Q Consensus 16 rfC~tC~~~KP-------pRShHCsvCnr 37 (499)
..|..|+..-. -|-|||+.||+
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGr 489 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGI 489 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcc
Confidence 56999986663 38999999987
No 22
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=44.34 E-value=1.5e+02 Score=32.47 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=22.1
Q ss_pred CcccccccccccCCCCccCCCCCceecCCCcc
Q 040827 14 SAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHH 45 (499)
Q Consensus 14 ~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHH 45 (499)
+..-|..|+.-.+....||..|+.-..+..++
T Consensus 220 ~l~~C~~Cd~l~~~~~a~CpRC~~~L~~~~~~ 251 (419)
T PRK15103 220 GLRSCSCCTAILPADQPVCPRCHTKGYVRRRN 251 (419)
T ss_pred CCCcCCCCCCCCCCCCCCCCCCCCcCcCCCCC
Confidence 34569999877666666788887776655444
No 23
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=44.22 E-value=20 Score=30.38 Aligned_cols=18 Identities=28% Similarity=0.691 Sum_probs=14.8
Q ss_pred ccceeecCCCCceeecCC
Q 040827 397 RNSVFWDPEAGRFVSSSS 414 (499)
Q Consensus 397 r~sv~wd~eagr~vs~~~ 414 (499)
|.-.++|+|.|.||=|+-
T Consensus 29 ~~k~lfDPETGqYVeV~i 46 (75)
T PF15232_consen 29 KTKTLFDPETGQYVEVLI 46 (75)
T ss_pred ceeeeecCCCCcEEEEeC
Confidence 366899999999998853
No 24
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=40.58 E-value=1.7e+02 Score=31.82 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=19.4
Q ss_pred ccccccccc-ccCCCCccCCCCCceecCCCcc
Q 040827 15 AHYAMLRYM-IVRKFSKHCRSCDKCVDGFDHH 45 (499)
Q Consensus 15 ~rfC~tC~~-~KPpRShHCsvCnrCVlrfDHH 45 (499)
..-|..|+. ..+....||..|+.-..+..++
T Consensus 215 ~~~C~~Cd~~~~~~~~a~CpRC~~~L~~~~~~ 246 (403)
T TIGR00155 215 LRSCSACHTTILPAQEPVCPRCSTPLYVRRRN 246 (403)
T ss_pred CCcCCCCCCccCCCCCcCCcCCCCcccCCCCC
Confidence 445888886 3444455677777766655444
No 25
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=38.59 E-value=15 Score=29.23 Aligned_cols=26 Identities=27% Similarity=0.490 Sum_probs=12.7
Q ss_pred Ccccccccccc--cCCCCccCCCCCcee
Q 040827 14 SAHYAMLRYMI--VRKFSKHCRSCDKCV 39 (499)
Q Consensus 14 ~~rfC~tC~~~--KPpRShHCsvCnrCV 39 (499)
+...|..|... .-.|-|||+.||..|
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~v 35 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVV 35 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEE
Confidence 35678888733 346889999999854
No 26
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=38.50 E-value=17 Score=28.91 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=17.4
Q ss_pred cCcccccccccccCCCCccCCC--CCce
Q 040827 13 YSAHYAMLRYMIVRKFSKHCRS--CDKC 38 (499)
Q Consensus 13 ~~~rfC~tC~~~KPpRShHCsv--CnrC 38 (499)
.+...|..|...-|+++..|+. ||.+
T Consensus 15 ~~k~ICrkCyarl~~~A~nCRKkkCGhs 42 (52)
T PF01020_consen 15 CDKMICRKCYARLPPRATNCRKKKCGHS 42 (52)
T ss_dssp TS-EEETTT--EE-TTSSS-TSSSCTS-
T ss_pred ccceecccccCcCCCCccceecccCCCC
Confidence 3577899999999999999998 8754
No 27
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=35.74 E-value=2.7e+02 Score=30.51 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=18.8
Q ss_pred Cccccccccccc--C----CCCccCCCCCceecCCCc
Q 040827 14 SAHYAMLRYMIV--R----KFSKHCRSCDKCVDGFDH 44 (499)
Q Consensus 14 ~~rfC~tC~~~K--P----pRShHCsvCnrCVlrfDH 44 (499)
...-|..|..-. | ...-||..|+.-..+.++
T Consensus 9 ~~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~ 45 (419)
T PRK15103 9 KHILCPQCDMLVALPRLEHGQKAACPRCGTTLTVRWD 45 (419)
T ss_pred CcccCCCCCceeecCCCCCCCeeECCCCCCCCcCCCC
Confidence 345599998432 2 234568877777665444
No 28
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=35.42 E-value=8.9 Score=42.14 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=19.0
Q ss_pred Ccccccccccc--cCCCCccCCCCCce
Q 040827 14 SAHYAMLRYMI--VRKFSKHCRSCDKC 38 (499)
Q Consensus 14 ~~rfC~tC~~~--KPpRShHCsvCnrC 38 (499)
...||..|... ---|-|||+.||+-
T Consensus 179 ~V~~CP~Ca~~F~l~rRrHHCRLCG~V 205 (505)
T KOG1842|consen 179 SVQFCPECANSFGLTRRRHHCRLCGRV 205 (505)
T ss_pred cccccccccchhhhHHHhhhhhhcchH
Confidence 35799999743 34588999999984
No 29
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=35.25 E-value=1.4e+02 Score=32.32 Aligned_cols=15 Identities=33% Similarity=1.190 Sum_probs=12.8
Q ss_pred ccCCCCCceecCCCccccc
Q 040827 30 KHCRSCDKCVDGFDHHCRW 48 (499)
Q Consensus 30 hHCsvCnrCVlrfDHHCpW 48 (499)
..|..|+.| +|+||.
T Consensus 48 ~lChnC~~C----~~~CPy 62 (372)
T TIGR02484 48 HLCHDCQSC----WHDCQY 62 (372)
T ss_pred HHCcCcccc----cccCcC
Confidence 679999999 578987
No 30
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=35.04 E-value=22 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=18.3
Q ss_pred ccccccccccCCCCccCCCCCc
Q 040827 16 HYAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 16 rfC~tC~~~KPpRShHCsvCnr 37 (499)
+.|..|....|.-++-|..||.
T Consensus 1 K~CP~C~~~V~~~~~~Cp~CG~ 22 (26)
T PF10571_consen 1 KTCPECGAEVPESAKFCPHCGY 22 (26)
T ss_pred CcCCCCcCCchhhcCcCCCCCC
Confidence 3589999999999988888874
No 31
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=34.28 E-value=99 Score=33.72 Aligned_cols=14 Identities=36% Similarity=1.376 Sum_probs=12.1
Q ss_pred cCCCCCceecCCCccccc
Q 040827 31 HCRSCDKCVDGFDHHCRW 48 (499)
Q Consensus 31 HCsvCnrCVlrfDHHCpW 48 (499)
.|..|+.|. |+||.
T Consensus 68 ~C~~Cg~C~----~~CP~ 81 (389)
T PRK15033 68 LCHNCGACL----HACQY 81 (389)
T ss_pred hCcCccccc----ccCcC
Confidence 899999995 58997
No 32
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.63 E-value=18 Score=29.19 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=29.9
Q ss_pred ccccccccccCCCC-------ccCCCCCceecCC-Ccccccccccccc
Q 040827 16 HYAMLRYMIVRKFS-------KHCRSCDKCVDGF-DHHCRWLNNCVGR 55 (499)
Q Consensus 16 rfC~tC~~~KPpRS-------hHCsvCnrCVlrf-DHHCpWLgNCIG~ 55 (499)
--|..|+..-|+-+ +-|..|..|+..+ +++|| ||=|.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CP---NCgGe 50 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCP---NCGGE 50 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCc---CCCCc
Confidence 45888998888765 5689999999998 99999 66654
No 33
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=33.44 E-value=34 Score=28.02 Aligned_cols=19 Identities=26% Similarity=0.733 Sum_probs=11.0
Q ss_pred CccCCCCCceecCCCcccc
Q 040827 29 SKHCRSCDKCVDGFDHHCR 47 (499)
Q Consensus 29 ShHCsvCnrCVlrfDHHCp 47 (499)
-+||-+|++-|.--.-.|-
T Consensus 8 H~HC~VCg~aIp~de~~CS 26 (64)
T COG4068 8 HRHCVVCGKAIPPDEQVCS 26 (64)
T ss_pred CccccccCCcCCCccchHH
Confidence 3567777766655444443
No 34
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=32.28 E-value=3.9e+02 Score=25.44 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHcCcchHHHHHhh
Q 040827 104 ICTAVSFLATVPLGE-LFFFHMILIRKGITTYEYVVAM 140 (499)
Q Consensus 104 l~llLail~~I~lg~-Lf~fHl~LI~rNiTT~E~i~~~ 140 (499)
+|.+++-++.+.+.+ -.++-+.-+.--++..|+++..
T Consensus 72 VcsllsPllsLM~fI~gtL~~lrrvsgcisik~w~~~q 109 (164)
T PF10624_consen 72 VCSLLSPLLSLMVFIIGTLYELRRVSGCISIKEWMQSQ 109 (164)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhcceeHHHHHHHH
Confidence 444444443333322 2245566666777778877543
No 35
>PF12773 DZR: Double zinc ribbon
Probab=30.81 E-value=32 Score=25.74 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.6
Q ss_pred CcccccccccccCCCCccCCCCC
Q 040827 14 SAHYAMLRYMIVRKFSKHCRSCD 36 (499)
Q Consensus 14 ~~rfC~tC~~~KPpRShHCsvCn 36 (499)
...+|..|....++..++|..||
T Consensus 28 ~~~~C~~Cg~~~~~~~~fC~~CG 50 (50)
T PF12773_consen 28 SKKICPNCGAENPPNAKFCPNCG 50 (50)
T ss_pred CCCCCcCCcCCCcCCcCccCccc
Confidence 46789999999999999999886
No 36
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=30.74 E-value=3.9e+02 Score=29.09 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=20.3
Q ss_pred ccccccccccc--C----CCCccCCCCCceecCCCccc
Q 040827 15 AHYAMLRYMIV--R----KFSKHCRSCDKCVDGFDHHC 46 (499)
Q Consensus 15 ~rfC~tC~~~K--P----pRShHCsvCnrCVlrfDHHC 46 (499)
..-|..|..-. | ...-+|..||.-..+.+++.
T Consensus 13 ~~~C~~Cd~l~~~~~l~~g~~a~CpRCg~~L~~~~~~~ 50 (403)
T TIGR00155 13 HILCSQCDMLVALPRIESGQKAACPRCGTTLTVGWDWS 50 (403)
T ss_pred eeeCCCCCCcccccCCCCCCeeECCCCCCCCcCCCCCC
Confidence 44599998433 2 23446888888777665543
No 37
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.49 E-value=49 Score=26.85 Aligned_cols=18 Identities=6% Similarity=-0.059 Sum_probs=9.6
Q ss_pred ccccccccccCCCCccCC
Q 040827 16 HYAMLRYMIVRKFSKHCR 33 (499)
Q Consensus 16 rfC~tC~~~KPpRShHCs 33 (499)
+.|..|....|+--..|+
T Consensus 4 kHC~~CG~~Ip~~~~fCS 21 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFCS 21 (59)
T ss_pred CcCCcCCCcCCcchhhhC
Confidence 445555555555555553
No 38
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=30.01 E-value=2e+02 Score=24.51 Aligned_cols=18 Identities=11% Similarity=-0.221 Sum_probs=12.9
Q ss_pred HHcCcchHHHHHhhhccC
Q 040827 127 IRKGITTYEYVVAMRTQS 144 (499)
Q Consensus 127 I~rNiTT~E~i~~~R~~~ 144 (499)
-.++++|-|.++..+.+-
T Consensus 78 W~~~r~tae~lk~e~~~~ 95 (112)
T PF14015_consen 78 WIRYRATAESLKREKWLY 95 (112)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457788889887766643
No 39
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=28.53 E-value=49 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=23.4
Q ss_pred ceeecCCCCceeecCCCCCCCccCCCCccee---cccce
Q 040827 399 SVFWDPEAGRFVSSSSGGAGSSQVLGAELLY---TGQSI 434 (499)
Q Consensus 399 sv~wd~eagr~vs~~~~~~~s~~~~~~~l~y---~g~si 434 (499)
-|--|+|.|||.=|-++ .||..+++| |||-+
T Consensus 9 KvL~DP~SG~Yy~vd~P-----~Qp~~k~lfDPETGqYV 42 (75)
T PF15232_consen 9 KVLQDPESGQYYVVDAP-----VQPKTKTLFDPETGQYV 42 (75)
T ss_pred cEeecCCCCCEEEEecC-----CCcceeeeecCCCCcEE
Confidence 36779999999877211 889999998 56654
No 40
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=27.30 E-value=53 Score=37.86 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=27.9
Q ss_pred cccCcccccccccccCCCCccCCCCCceecCCCcccccccccccc
Q 040827 11 MLYSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGR 55 (499)
Q Consensus 11 ~~~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~ 55 (499)
.-.+.+||..|...-. .+.|..||.=+..-..+|+=.|.-.|.
T Consensus 11 n~~~akFC~~CG~~l~--~~~Cp~CG~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 11 NPNNNRFCQKCGTSLT--HKPCPQCGTEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCCccccccCCCCC--CCcCCCCCCCCCcccccccccCCcccc
Confidence 3456777888865432 356777777777777777766555554
No 41
>PRK13794 hypothetical protein; Provisional
Probab=26.58 E-value=26 Score=38.75 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=21.1
Q ss_pred CccccccccccccCcccccccccccCCCCccCCCCCc
Q 040827 1 MKIYYNQERRMLYSAHYAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 1 ~K~~~e~e~~~~~~~rfC~tC~~~KPpRShHCsvCnr 37 (499)
||.|..+. ...||..|| .|.-.++|..|+.
T Consensus 1 ~~~~~~~~-----~~~wc~~cn--~p~~~~~c~~cg~ 30 (479)
T PRK13794 1 MKTYLGKI-----HLKWCDNCN--VPVLGKKCAICGS 30 (479)
T ss_pred Ccceecce-----EEEEcCCCC--CeecCCchhHhCC
Confidence 45554443 368999999 5566667999986
No 42
>PHA02898 virion envelope protein; Provisional
Probab=26.56 E-value=2.1e+02 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=19.7
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHH-HHcCcchHH
Q 040827 100 RLGAICTAVSFLATVPLGELFFFHMIL-IRKGITTYE 135 (499)
Q Consensus 100 ~Lgil~llLail~~I~lg~Lf~fHl~L-I~rNiTT~E 135 (499)
.+.++++++.++ .+.++++|-+|- -+.+-+++|
T Consensus 46 alSii~FIlgiv---l~lG~~ifs~y~r~C~~~~~~e 79 (92)
T PHA02898 46 SISIISFILAII---LILGIIFFKGYNMFCGGNTTDE 79 (92)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhhcCCCcccc
Confidence 344555555544 344566777776 666766665
No 43
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=26.18 E-value=1.1e+02 Score=26.63 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHhhhc
Q 040827 107 AVSFLATVPLGELFFFHMILIRKGITTYEYVVAMRT 142 (499)
Q Consensus 107 lLail~~I~lg~Lf~fHl~LI~rNiTT~E~i~~~R~ 142 (499)
++|.+..+.+..+|+.-++.|.+|.-..|..+.++.
T Consensus 39 Vic~~lVfVii~lFi~ll~~i~~~~e~~~~~~~~~~ 74 (84)
T PF06143_consen 39 VICCFLVFVIIVLFILLLYNINKNAEQDRAERQQRE 74 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444455666666777777655554444333
No 44
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=25.27 E-value=1.4e+02 Score=31.37 Aligned_cols=51 Identities=18% Similarity=0.406 Sum_probs=37.4
Q ss_pred cCcccccccccccCCCCccCCCCCceecCCCccccccccccccccHHHHHHHHHHHHHHHHH
Q 040827 13 YSAHYAMLRYMIVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLIV 74 (499)
Q Consensus 13 ~~~rfC~tC~~~KPpRShHCsvCnrCVlrfDHHCpWLgNCIG~rNyr~FllFL~y~lL~~i~ 74 (499)
.....|..|+.=.-.=-|||..-|.||--..|-= .-.|+.++..+..++.+
T Consensus 114 prTHHCsiC~kCVL~MDHHCPwinnCVG~~NHry-----------FFlFl~~ltlat~~~~i 164 (309)
T KOG1313|consen 114 PRTHHCSICNKCVLKMDHHCPWINNCVGAHNHRY-----------FFLFLFYLTLATSYAAI 164 (309)
T ss_pred CCcchhhHHhhHhhccccCCchhhcccccccchh-----------HHHHHHHHHHHHHHHHH
Confidence 4467899999888888999999999999887744 44577766544444433
No 45
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=24.99 E-value=1.7e+02 Score=25.75 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=22.4
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHH
Q 040827 100 RLGAICTAVSFLATVPLGELFFFHMILIRKGITTYEYV 137 (499)
Q Consensus 100 ~Lgil~llLail~~I~lg~Lf~fHl~LI~rNiTT~E~i 137 (499)
.+.++++++.+++ +.++++|.+|--+++-+++|.+
T Consensus 47 alSii~FIlG~vl---~lGilifs~y~~C~~~~~~~r~ 81 (91)
T PHA02680 47 ALSVTCFIVGAVL---LLGLFVFSMYRKCSGSMPYERL 81 (91)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhcccCCCceeecc
Confidence 3445666665543 3347778888878887777654
No 46
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.92 E-value=1.4e+02 Score=30.89 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=15.3
Q ss_pred ccc-ccHHHHHHHHHHHHHHHHHHHHH
Q 040827 53 VGR-KNYITFVCLMAASLVWLIVEFGV 78 (499)
Q Consensus 53 IG~-rNyr~FllFL~y~lL~~i~~l~v 78 (499)
||. ...+..++|++++++++++.+++
T Consensus 189 VG~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 189 VGPRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHH
Confidence 564 45566666666666666555444
No 48
>PF08600 Rsm1: Rsm1-like; InterPro: IPR013909 This entry contains Nuclear-interacting partner of ALK (NIPA) and NIPA like proteins, as well as mRNA export factor Rsm1, all of which contain a C3HC-type zinc finger. The domain represented in this entry is found C-terminal to the zinc-finger like domain IPR012935 from INTERPRO. Rsm1 is involved in mRNA export from the nucleus []. NIPA is an essential component of an SCF-type E3 ligase complex, SCF(NIPA), a complex that controls mitotic entry by mediating ubiquitination and subsequent degradation of cyclin B1 (CCNB1). Its cell-cycle-dependent phosphorylation regulates the assembly of the SCF(NIPA) complex, restricting CCNB1 ubiquitination activity to interphase. Its inactivation results in nuclear accumulation of CCNB1 in interphase and premature mitotic entry [].
Probab=22.09 E-value=48 Score=28.60 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.8
Q ss_pred ccccccccccc
Q 040827 44 HHCRWLNNCVG 54 (499)
Q Consensus 44 HHCpWLgNCIG 54 (499)
.||||++.-..
T Consensus 56 ~~CPwv~~~~q 66 (91)
T PF08600_consen 56 EYCPWVNPSTQ 66 (91)
T ss_pred ccCCccCCccc
Confidence 68999987653
No 49
>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]
Probab=21.98 E-value=39 Score=34.56 Aligned_cols=11 Identities=27% Similarity=0.148 Sum_probs=8.7
Q ss_pred cCCCccccccc
Q 040827 40 DGFDHHCRWLN 50 (499)
Q Consensus 40 lrfDHHCpWLg 50 (499)
.+.+|||||..
T Consensus 39 sye~H~Cp~~~ 49 (250)
T KOG3183|consen 39 SYESHHCPKGL 49 (250)
T ss_pred hHhhcCCCccc
Confidence 55789999973
No 50
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=21.08 E-value=3.4e+02 Score=28.81 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHcCcchH
Q 040827 118 ELFFFHMILIRKGITTY 134 (499)
Q Consensus 118 ~Lf~fHl~LI~rNiTT~ 134 (499)
+.++++.-.-..|+.|-
T Consensus 111 l~lv~~~~~rKlN~n~D 127 (308)
T PF14800_consen 111 LILVFMRHQRKLNMNTD 127 (308)
T ss_pred HHHHHHHHHHHhcccHH
Confidence 34555555555565553
No 51
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=20.95 E-value=47 Score=25.82 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=20.5
Q ss_pred ccccccccc-cCccccccccc-cc--CCCCccCCCCCc
Q 040827 4 YYNQERRML-YSAHYAMLRYM-IV--RKFSKHCRSCDK 37 (499)
Q Consensus 4 ~~e~e~~~~-~~~rfC~tC~~-~K--PpRShHCsvCnr 37 (499)
||+-++..+ ...+||+.|.. .. -....+|..|+.
T Consensus 8 ~y~v~~~~v~~~~~fCP~Cg~~~m~~~~~r~~C~~Cgy 45 (50)
T PRK00432 8 YYEVDGGKVKRKNKFCPRCGSGFMAEHLDRWHCGKCGY 45 (50)
T ss_pred eEEECCCEEEEccCcCcCCCcchheccCCcEECCCcCC
Confidence 455555544 33669999976 22 224567777764
Done!