Query 040827
Match_columns 499
No_of_seqs 205 out of 1208
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 19:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040827.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040827hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 71.5 0.8 5.9E-05 33.7 1.8 27 11-37 15-41 (56)
2 d2dkta2 g.93.1.1 (A:82-137) RI 55.3 1.7 0.00012 32.0 0.9 24 17-40 4-28 (56)
3 d2dmda2 g.37.1.1 (A:8-33) Zinc 47.6 1.8 0.00013 26.7 -0.0 14 30-43 2-15 (26)
4 d2dkta2 g.93.1.1 (A:82-137) RI 43.8 2.1 0.00016 31.3 -0.1 36 12-47 17-55 (56)
5 d1vfya_ g.50.1.1 (A:) vps27p p 43.5 4.3 0.00031 29.9 1.6 23 17-39 7-31 (67)
6 d1wv8a1 d.304.1.1 (A:2-72) Hyp 43.4 3.8 0.00027 31.3 1.2 16 398-413 5-20 (71)
7 d1joca1 g.50.1.1 (A:1348-1411) 41.9 5.8 0.00042 28.9 2.1 25 15-39 8-34 (64)
8 d2pg3a1 c.26.2.1 (A:1-230) Que 38.1 2.8 0.00021 36.3 -0.3 24 16-41 183-206 (230)
9 d1wfka_ g.50.1.1 (A:) Zinc fin 37.4 5.7 0.00042 30.9 1.5 25 15-39 9-35 (88)
10 d1dvpa2 g.50.1.1 (A:149-220) H 36.6 8 0.00058 28.9 2.1 26 14-39 12-39 (72)
11 d2adra2 g.37.1.1 (A:131-161) A 28.7 5.5 0.0004 25.7 -0.0 14 30-43 2-15 (31)
12 d2g0wa1 c.1.15.4 (A:10-284) Hy 23.5 20 0.0015 31.1 2.8 29 229-257 1-30 (275)
13 d1olza3 g.16.2.1 (A:481-536) S 22.5 5.2 0.00038 28.7 -1.2 23 33-55 6-31 (56)
14 d1y02a2 g.50.1.1 (A:20-70) Rif 20.6 15 0.0011 25.7 1.0 21 18-38 3-25 (51)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=71.54 E-value=0.8 Score=33.66 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.3
Q ss_pred cccCcccccccccccCCCCccCCCCCc
Q 040827 11 MLYSAHYAMLRYMIVRKFSKHCRSCDK 37 (499)
Q Consensus 11 ~~~~~rfC~tC~~~KPpRShHCsvCnr 37 (499)
...+...|..|...-|+|+..|+.|+.
T Consensus 15 ~~~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 15 RVFLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCC
T ss_pred HhhhhHHHhhccccCCccccccccCCC
Confidence 345788999999999999999998765
No 2
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.34 E-value=1.7 Score=31.96 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=10.2
Q ss_pred cccccccccC-CCCccCCCCCceec
Q 040827 17 YAMLRYMIVR-KFSKHCRSCDKCVD 40 (499)
Q Consensus 17 fC~tC~~~KP-pRShHCsvCnrCVl 40 (499)
||..|+.|-- +...||..||-|-.
T Consensus 4 fC~iC~l~dddk~~yHC~~CgiCRv 28 (56)
T d2dkta2 4 YCSICHLFDKDKRQYHCESCGICRI 28 (56)
T ss_dssp ECSSSCCEECSSSEEEETTTTEEEE
T ss_pred ECCcCCcccCCCCcccCCCCCceee
Confidence 4445544421 22344555555443
No 3
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.55 E-value=1.8 Score=26.74 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=11.8
Q ss_pred ccCCCCCceecCCC
Q 040827 30 KHCRSCDKCVDGFD 43 (499)
Q Consensus 30 hHCsvCnrCVlrfD 43 (499)
|-|.+|++|..|.|
T Consensus 2 hkc~~c~kcfsrkd 15 (26)
T d2dmda2 2 HKCEVCGKCFSRKD 15 (26)
T ss_dssp CCBTTTTBCCCCHH
T ss_pred CccchhhhHhcchh
Confidence 56999999998876
No 4
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.79 E-value=2.1 Score=31.35 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=25.7
Q ss_pred ccCcccccccccccCCCCccCCCCCceecC--C-Ccccc
Q 040827 12 LYSAHYAMLRYMIVRKFSKHCRSCDKCVDG--F-DHHCR 47 (499)
Q Consensus 12 ~~~~rfC~tC~~~KPpRShHCsvCnrCVlr--f-DHHCp 47 (499)
.+.=..|..|.+=....-.||..|+.|+.. + .|.|.
T Consensus 17 ~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~Ci 55 (56)
T d2dkta2 17 QYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 55 (56)
T ss_dssp EEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred cccCCCCCceeecCCccccccCccccccCcccCCCcccc
Confidence 344445677776667788999999999965 3 46663
No 5
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.46 E-value=4.3 Score=29.93 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=17.2
Q ss_pred ccccccc--ccCCCCccCCCCCcee
Q 040827 17 YAMLRYM--IVRKFSKHCRSCDKCV 39 (499)
Q Consensus 17 fC~tC~~--~KPpRShHCsvCnrCV 39 (499)
-|..|.. ..-.|-|||+.||+-+
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~f 31 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVF 31 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred ccccCCCcccCcccccccccCCCEe
Confidence 4888874 3456889999999854
No 6
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=43.38 E-value=3.8 Score=31.25 Aligned_cols=16 Identities=44% Similarity=0.802 Sum_probs=13.3
Q ss_pred cceeecCCCCceeecC
Q 040827 398 NSVFWDPEAGRFVSSS 413 (499)
Q Consensus 398 ~sv~wd~eagr~vs~~ 413 (499)
...+||.|||-+|--+
T Consensus 5 V~a~WD~EAgVWva~s 20 (71)
T d1wv8a1 5 VQALWDGEAGVWVAES 20 (71)
T ss_dssp EEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCEEEEEc
Confidence 3579999999999764
No 7
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.92 E-value=5.8 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=17.8
Q ss_pred ccccccccc--ccCCCCccCCCCCcee
Q 040827 15 AHYAMLRYM--IVRKFSKHCRSCDKCV 39 (499)
Q Consensus 15 ~rfC~tC~~--~KPpRShHCsvCnrCV 39 (499)
..-|..|.. ..-.|-|||+.||+.|
T Consensus 8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~ 34 (64)
T d1joca1 8 VQNCMACGKGFSVTVRRHHCRQCGNIF 34 (64)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCcCCcccCCccccchhhhCCee
Confidence 345888864 3346789999999864
No 8
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=38.11 E-value=2.8 Score=36.34 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=19.0
Q ss_pred ccccccccccCCCCccCCCCCceecC
Q 040827 16 HYAMLRYMIVRKFSKHCRSCDKCVDG 41 (499)
Q Consensus 16 rfC~tC~~~KPpRShHCsvCnrCVlr 41 (499)
.....| +++.+.+||-.|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 344567 677788999999999987
No 9
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.44 E-value=5.7 Score=30.92 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=18.4
Q ss_pred ccccccccc--ccCCCCccCCCCCcee
Q 040827 15 AHYAMLRYM--IVRKFSKHCRSCDKCV 39 (499)
Q Consensus 15 ~rfC~tC~~--~KPpRShHCsvCnrCV 39 (499)
...|..|+. -...|-|||+.||+.+
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCcCcccCchhccccccccccccChhh
Confidence 345888874 3456789999999953
No 10
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=36.64 E-value=8 Score=28.86 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=19.2
Q ss_pred Cccccccccc--ccCCCCccCCCCCcee
Q 040827 14 SAHYAMLRYM--IVRKFSKHCRSCDKCV 39 (499)
Q Consensus 14 ~~rfC~tC~~--~KPpRShHCsvCnrCV 39 (499)
+...|..|.. -.-.|-|||+.||+.+
T Consensus 12 ~~~~C~~C~~~F~~~~rrhhCr~CG~~~ 39 (72)
T d1dvpa2 12 DGRVCHRCRVEFTFTNRKHHCRNCGQVF 39 (72)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCccccCCCcccCccccccccccCCee
Confidence 3456999974 3346889999999864
No 11
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=28.75 E-value=5.5 Score=25.71 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=12.2
Q ss_pred ccCCCCCceecCCC
Q 040827 30 KHCRSCDKCVDGFD 43 (499)
Q Consensus 30 hHCsvCnrCVlrfD 43 (499)
..|..|++|..|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 36999999999987
No 12
>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}
Probab=23.51 E-value=20 Score=31.10 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCCcccCcccc-ccCCHHHHHHHHHHHHhh
Q 040827 229 QRPVRISAWKL-AKLDSTEAMRAAAKARAS 257 (499)
Q Consensus 229 ~~~v~is~w~l-akl~~~ea~~aa~~ar~~ 257 (499)
|.++.|+.|+| .+++-+|+++.|+++.=.
T Consensus 1 ~~~i~i~~~tl~~~~~lee~l~~aa~~Gfd 30 (275)
T d2g0wa1 1 KCPITISSYTLGTEVSFPKRVKVAAENGFD 30 (275)
T ss_dssp CCCEEECGGGGTTTSCHHHHHHHHHHTTCS
T ss_pred CCCeEeeHhHhCCCCCHHHHHHHHHHhCCC
Confidence 45788999999 699999999999998733
No 13
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.50 E-value=5.2 Score=28.74 Aligned_cols=23 Identities=35% Similarity=0.886 Sum_probs=19.0
Q ss_pred CCCCceecCCCcccccc---cccccc
Q 040827 33 RSCDKCVDGFDHHCRWL---NNCVGR 55 (499)
Q Consensus 33 svCnrCVlrfDHHCpWL---gNCIG~ 55 (499)
..|..||.-.|-||.|- +.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 46889999999999995 568754
No 14
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.58 E-value=15 Score=25.67 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=13.5
Q ss_pred cccccc--ccCCCCccCCCCCce
Q 040827 18 AMLRYM--IVRKFSKHCRSCDKC 38 (499)
Q Consensus 18 C~tC~~--~KPpRShHCsvCnrC 38 (499)
|..|.. -.-.|-|||+.||+-
T Consensus 3 C~~C~~~F~~~~rkhhCr~CG~~ 25 (51)
T d1y02a2 3 CKSCGAHFANTARKQTCLDCKKN 25 (51)
T ss_dssp CTTTCCCCSSGGGCEECTTTCCE
T ss_pred ccccCCcccCCccCcccccCCcc
Confidence 455542 234567899999984
Done!