BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040833
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 218/495 (44%), Gaps = 35/495 (7%)
Query: 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSF-GNXXXXXXXXXXXNQFVGQIPETL 60
N+ VG +P L L+ L++ N +GEIP G N F G +P
Sbjct: 254 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 61 SQLKRMLYLLLGVNKLSGEIPF-SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
+ L L N SGE+P ++ + L + + N+ G LP L +L L+
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 120 LCRNQFTGPI-PASISNASN-LMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGK 176
L N F+GPI P N N L L + NGF+GK+P +L +L + +S N+L
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 429
Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236
+SL + S+L L++ N G +P+ + + T L LI+ N L G IPSGL
Sbjct: 430 ----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLS 484
Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
N NL ++ L N+ TG IP I L L L L N F G IP+ +G+ LI L+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 297 NMLEGSIPSSLGK-----CQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLN-- 349
N+ G+IP+++ K + E G +L + + QLN
Sbjct: 545 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 604
Query: 350 --------------GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395
G F ++ +D+S N LSG IP IGS L L + N
Sbjct: 605 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS 455
G+IP + LRG+ LDLS N L GRIP+ + L ++LS N+ G +P G F
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Query: 456 NSSAISIDGNDNLCG 470
N LCG
Sbjct: 725 TFPPAKFLNNPGLCG 739
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 221/472 (46%), Gaps = 35/472 (7%)
Query: 16 SKLRILAMHRNNLSGEIPS--SFGNXXXXXXXXXXXN--QFVGQIPETLSQLKRMLYLLL 71
+ L L + RN+LSG + + S G+ N F G++ L +L + L L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 72 GVNKLSGE--IPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGP 128
N +SG + + + + L ++ + N++ G + D+ + NLE L++ N F+
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV-NLEFLDVSSNNFSTG 212
Query: 129 IPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDLEFVNSL- 186
IP + + S L L I+ N SG ++ +L+ + IS N +FV +
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN----------QFVGPIP 261
Query: 187 -VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245
+ L+ L +++N F G +P+ + L L + N +G +P + LE L
Sbjct: 262 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 246 LGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTL-LITLNFEENMLEGSI 303
L N F+G +P +++ + L+ L L N+F GE+P S+ NL+ L+TL+ N G I
Sbjct: 322 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Query: 304 PSSLGKCQXXXXXXXXXXXX----XGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
+L CQ G IP + S L + L LS N L+G +PS+ G L
Sbjct: 382 LPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSL 438
Query: 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
L + + N L G+IP + LE L+++ N G IPS LS+ + + LS N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG 471
L+G IPK++ L L LS N F G +P + + S I +D N NL G
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 549
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 51/277 (18%)
Query: 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETL 60
FN+L G++P L + + L +++ N L+GEIP G N F G IP L
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 61 SQLKRMLYLLLGVNKLSGEIPFSIYN---------LSSLNYICVPVNQLQ------GSLP 105
+ +++L L N +G IP +++ ++ Y+ + + ++ G+L
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 106 SDLGFTLPNLEVL------NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKIL 159
G L L N+ + G + N ++M L ++ N SG +P K +
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEI 649
Query: 160 HKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRI 219
+ ++ I L + N+ G +P+ VG+L L I
Sbjct: 650 GSMPYLFI---------------------------LNLGHNDISGSIPDEVGDLRG-LNI 681
Query: 220 LIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP 256
L + +N+L G IP + L L + L N +G IP
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 152/495 (30%), Positives = 218/495 (44%), Gaps = 35/495 (7%)
Query: 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSF-GNXXXXXXXXXXXNQFVGQIPETL 60
N+ VG +P L L+ L++ N +GEIP G N F G +P
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 61 SQLKRMLYLLLGVNKLSGEIPF-SIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119
+ L L N SGE+P ++ + L + + N+ G LP L +L L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 120 LCRNQFTGPI-PASISNASN-LMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGK 176
L N F+GPI P N N L L + NGF+GK+P +L +L + +S N+L
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG-- 432
Query: 177 KDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236
+SL + S+L L++ N G +P+ + + T L LI+ N L G IPSGL
Sbjct: 433 ----TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLS 487
Query: 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296
N NL ++ L N+ TG IP I L L L L N F G IP+ +G+ LI L+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 297 NMLEGSIPSSLGK-----CQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLN-- 349
N+ G+IP+++ K + E G +L + + QLN
Sbjct: 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607
Query: 350 --------------GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395
G F ++ +D+S N LSG IP IGS L L + N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS 455
G+IP + LRG+ LDLS N L GRIP+ + L ++LS N+ G +P G F
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Query: 456 NSSAISIDGNDNLCG 470
N LCG
Sbjct: 728 TFPPAKFLNNPGLCG 742
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 221/472 (46%), Gaps = 35/472 (7%)
Query: 16 SKLRILAMHRNNLSGEIPS--SFGNXXXXXXXXXXXN--QFVGQIPETLSQLKRMLYLLL 71
+ L L + RN+LSG + + S G+ N F G++ L +L + L L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 72 GVNKLSGE--IPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGP 128
N +SG + + + + L ++ + N++ G + D+ + NLE L++ N F+
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV-NLEFLDVSSNNFSTG 215
Query: 129 IPASISNASNLMRLVIAKNGFSGKVP-SLKILHKLEWVGISRNHLGNGKKDDLEFVNSL- 186
IP + + S L L I+ N SG ++ +L+ + IS N +FV +
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN----------QFVGPIP 264
Query: 187 -VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245
+ L+ L +++N F G +P+ + L L + N +G +P + LE L
Sbjct: 265 PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 246 LGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTL-LITLNFEENMLEGSI 303
L N F+G +P +++ + L+ L L N+F GE+P S+ NL+ L+TL+ N G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 304 PSSLGKCQXXXXXXXXXXXX----XGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGIL 359
+L CQ G IP + S L + L LS N L+G +PS+ G L
Sbjct: 385 LPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSL 441
Query: 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419
L + + N L G+IP + LE L+++ N G IPS LS+ + + LS N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG 471
L+G IPK++ L L LS N F G +P + + S I +D N NL G
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNG 552
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 51/277 (18%)
Query: 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETL 60
FN+L G++P L + + L +++ N L+GEIP G N F G IP L
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 61 SQLKRMLYLLLGVNKLSGEIPFSIYN---------LSSLNYICVPVNQLQ------GSLP 105
+ +++L L N +G IP +++ ++ Y+ + + ++ G+L
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 106 SDLGFTLPNLEVL------NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKIL 159
G L L N+ + G + N ++M L ++ N SG +P K +
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP--KEI 652
Query: 160 HKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRI 219
+ ++ I L + N+ G +P+ VG+L L I
Sbjct: 653 GSMPYLFI---------------------------LNLGHNDISGSIPDEVGDLRG-LNI 684
Query: 220 LIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP 256
L + +N+L G IP + L L + L N +G IP
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 3/241 (1%)
Query: 231 IPSGLRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLL 289
IPS L NL L FL++GG N G IP +I L +L L + G IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 290 ITLNFEENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLN 349
+TL+F N L G++P S+ G IP S L + +S+N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
G +P F L NL +D+S N L G GS +++ + N ++ + +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLC 469
+ LDL N + G +P+ L FL +LN+SFN+ GE+P G + N LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 470 G 470
G
Sbjct: 306 G 306
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 107/251 (42%), Gaps = 35/251 (13%)
Query: 8 VPGKLGSLSKLRILAMHR-NNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLSQLKRM 66
+P L +L L L + NNL G IP + G IP+ LSQ+K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 67 LYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFT 126
+ L N LSG +P SI +LPNL + N+ +
Sbjct: 128 VTLDFSYNALSGTLPPSIS-------------------------SLPNLVGITFDGNRIS 162
Query: 127 GPIPASISNASNLMR-LVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNS 185
G IP S + S L + I++N +GK+P L +V +SRN L + D S
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML---EGDASVLFGS 219
Query: 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245
N ++ L + N+ L + VG LS L L + NN+++G +P GL L L L+
Sbjct: 220 DKNTQKIHL---AKNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 246 LGGNQFTGRIP 256
+ N G IP
Sbjct: 275 VSFNNLCGEIP 285
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 17/235 (7%)
Query: 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLS 61
N LVG +P + L++L L + N+SG IP N G +P ++S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSL-NYICVPVNQLQGSLPSDLGFTLPNLEVLNL 120
L ++ + N++SG IP S + S L + + N+L G +P F NL ++L
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDL 204
Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDL 180
RN G + N ++ +AKN + L VG+S+N G +++
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNNR 255
Query: 181 EF---VNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP 232
+ L L L +S NN G +P+ GNL R + NN+ P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ-RFDVSAYANNKCLCGSP 308
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 105 PSDLGFTLPNLEVLNLCR----NQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKIL 159
P + +L NL LN N GPIP +I+ + L L I SG +P L +
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 160 HKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRI 219
L + S N L + + +LV + N G +P++ G+ S
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVG------ITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 220 LIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP---GS--------------IVDL 262
+ + N+L G IP NL NL F+ L N G GS DL
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 263 YK------LQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP 304
K L L L N+ +G +P + L L +LN N L G IP
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 351 PLPSNFGILKNLGAIDISE-NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409
P+PS+ L L + I N L G IP +I T+L L + G IP LS ++
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449
+ LD S N LSG +P + + P L + N G +P
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Query: 327 IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386
IP+ + L L+ N L GP+P L L + I+ +SG IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF-PFLQNLNLSFNHFE 445
L + N G +P S+SSL + + N +SG IP +F ++ +S N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 446 GEVPIKGVFSNSSAISIDGNDNLCGG 471
G++P F+N + +D + N+ G
Sbjct: 188 GKIP--PTFANLNLAFVDLSRNMLEG 211
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 8/173 (4%)
Query: 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGN-XXXXXXXXXXXNQFVGQIPET 59
+N L G +P + SL L + N +SG IP S+G+ N+ G+IP T
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 60 LSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT--LPNLEV 117
+ L + ++ L N L G+ S+ S N ++ + SL DLG NL
Sbjct: 194 FANLN-LAFVDLSRNMLEGDA--SVLFGSDKN--TQKIHLAKNSLAFDLGKVGLSKNLNG 248
Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN 170
L+L N+ G +P ++ L L ++ N G++P L + + + N
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
T+ + +GL L +LD + L S F + L+NL +DIS
Sbjct: 411 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
+ LE L M GN FQ N +P + LR + LDLS+ L P + LQ LN+S
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 442 NHF 444
N+F
Sbjct: 528 NNF 530
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 333 GLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
GLSSL + L ++ N LP F L+NL +D+S+ +L P++ S + L+ L M
Sbjct: 467 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP-FLQNLNLSFNHF 444
+ N F L ++ LD S N++ + L++FP L LNL+ N F
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
T+ + +GL L +LD + L S F + L+NL +DIS
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
+ LE L M GN FQ N +P + LR + LDLS+ L P + LQ LN+S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 442 NHF 444
N+F
Sbjct: 504 NNF 506
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 333 GLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
GLSSL + L ++ N LP F L+NL +D+S+ +L P++ S + L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP-FLQNLNLSFNHF 444
+ N F L ++ LD S N++ + L++FP L LNL+ N F
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
T+ + +GL L +LD + L S F + L+NL +DIS
Sbjct: 92 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
+ LE L M GN FQ N +P + LR + LDLS+ L P + LQ LN+S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 442 NHF 444
N+F
Sbjct: 209 NNF 211
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 333 GLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
GLSSL + L ++ N LP F L+NL +D+S+ +L P++ S + L+ L M
Sbjct: 148 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFP-FLQNLNLSFNHF 444
+ N F L ++ LD S N++ + L++FP L LNL+ N F
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 12/176 (6%)
Query: 131 ASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNAS 190
A N N + +IA N V ++ L + ++ LG K D+ + L N +
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-----LGGNKLHDISALKELTNLT 88
Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRN-LVNLEFLHLGGN 249
L I N LP V + T L+ L++ NQL ++P G+ + L NL +L+L N
Sbjct: 89 YL----ILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYHN 143
Query: 250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS 305
Q G L L RL L+ N+ LT L L+ +N L+ S+P
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPD 198
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 221 IVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP 280
I+ NN ++ G++ L N+ +L LGGN+ ++ +L L L L GN+ +P
Sbjct: 46 IIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL-QSLP 101
Query: 281 SSI-GNLTLLITLNFEENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSI 339
+ + LT L L EN L+ ++P V +
Sbjct: 102 NGVFDKLTNLKELVLVENQLQ-------------------------SLPDGVFDKLTNLT 136
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394
YL L NQL F L NL +D+ N+L T+L+QL +N N
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 60 LSQLKRMLYLLLGVNKLSGEIPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118
L +L + YL+L N+L +P +++ L++L + + NQLQ SLP + L NL L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL 138
Query: 119 NLCRNQFTGPIPASISNASNLMRLVIAKN 147
L NQ +NL RL + N
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 340 YLDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
YL L+ NQL LP+ F L NL + + EN+L T L L + N Q
Sbjct: 89 YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS 458
L + LDL N L + L+ L+L+ N + VP GVF +
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VP-DGVFDRLT 205
Query: 459 AIS 461
+++
Sbjct: 206 SLT 208
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 9/139 (6%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI---LKNLGAIDISENKLSGQIPSSIGS 382
T+ + +GL L +LD + L S F + L+NL +DIS
Sbjct: 387 TMSSNFLGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 383 CTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441
+ LE L M GN FQ N +P + LR + LDLS+ L P + LQ LN++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 442 NHFEGEVPIKGVFSNSSAI 460
N + VP G+F +++
Sbjct: 504 NQLKS-VP-DGIFDRLTSL 520
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Query: 112 LPNLEVLNLCRN--QFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISR 169
LP+LE L+L RN F G S ++L L ++ NG + L +LE +
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 170 NHLGNGKKD------------DLEFVNSLVN-------ASRLELLQISDNNFG-GMLPEA 209
++L + D+ ++ V S LE+L+++ N+F LP+
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD-LYKLQRL 268
L L L + QL P+ +L +L+ L++ NQ +P I D L LQ++
Sbjct: 466 FTELRN-LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKI 523
Query: 269 ALEGNKFWGEIP 280
L N + P
Sbjct: 524 WLHTNPWDCSCP 535
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQG 398
+LDLSQ QL P+ F L +L ++++ N+L +P I T L+++ ++ N +
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 532
Query: 399 NIP 401
+ P
Sbjct: 533 SCP 535
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 333 GLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
GLSSL + L ++ N LP F L+NL +D+S+ +L P++ S + L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK 426
N + L ++ + L N P+
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS N L +F L +D+S ++ + S + L L++ GN Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFN 442
+ S L ++ L NL+ LENFP L+ LN++ N
Sbjct: 93 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHN 134
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 88/206 (42%), Gaps = 11/206 (5%)
Query: 69 LLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGP 128
L L NKLS + + L+ L + + N+LQ +LP+ + L NLE L + N+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 129 IPASISNASNLMRLVIAKNGFSGKVPSL-KILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
NL L + +N P + L KL ++ + N L + K + + SL
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL- 159
Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSG-LRNLVNLEFLHL 246
L L NN +PE + T L+ L + NNQL +P G +L L+ L L
Sbjct: 160 --KELRLY----NNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPEGAFDSLEKLKMLQL 212
Query: 247 GGNQFTGRIPGSIVDLYKLQRLALEG 272
N + G I L++ A EG
Sbjct: 213 QENPWDCTCNGIIYMAKWLKKKADEG 238
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLE 242
+ LVN + L L D N LP V + T+L L +G N+L ++P G+ L +L+
Sbjct: 106 DQLVNLAELRL----DRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLK 160
Query: 243 FLHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
L L NQ R+P G+ L +L+ L L+ N+ + +L L L +EN
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 341 LDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQG 398
LDL N+L+ LPS F L L + +++NKL +P+ I LE L + N Q
Sbjct: 42 LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS 458
L + L L RN L P+ ++ L L+L +N + +P KGVF +
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LP-KGVFDKLT 157
Query: 459 AIS 461
++
Sbjct: 158 SLK 160
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 86/218 (39%), Gaps = 45/218 (20%)
Query: 55 QIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFT--- 111
++P+T Q + L L N L +P SI +L+ L + + LP L T
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 112 -----LPNLEVLNLCRNQFTG--PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEW 164
L NL+ L L ++TG +PASI+N NL L I + S P++ L KLE
Sbjct: 177 GEHQGLVNLQSLRL---EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233
Query: 165 VGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGN 224
+ DL +L N + FGG P L+ LI+ +
Sbjct: 234 L-------------DLRGCTALRNYPPI---------FGGRAP---------LKRLILKD 262
Query: 225 NQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDL 262
+P + L LE L L G R+P I L
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 105 PSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPSL-KILHK 161
PS FT LN +N FT + S L L++ +NG KV + K +
Sbjct: 350 PSPSSFTF-----LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404
Query: 162 LEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILI 221
LE + +S N L + D + A + +L +S N G L ++++L
Sbjct: 405 LETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSSNMLTG---SVFRCLPPKVKVLD 456
Query: 222 VGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD-LYKLQRLALEGNKFWGEIP 280
+ NN++ IP + +L L+ L++ NQ +P + D L LQ + L N + P
Sbjct: 457 LHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRNHLGN---GK 176
C+ + +P+ I ++ +L + G + + + L KL W+ + N L G
Sbjct: 21 CQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 177 KDDLEFVNSLVNASRL----------ELLQISDNNFGG----MLPEAVGNLSTRLRILIV 222
DDL + +L A+ L Q+ GG LP V + T+L+ L +
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 223 GNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
NQL +IP+G L NL+ L L NQ G+ L KLQ + L GN+F
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 215 TRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273
T L L + NNQL ++P G+ +L L+ L+LGGNQ G L KL+ L L N
Sbjct: 83 TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIP----SSLGKCQ 311
+ + LT L TL+ N L+ S+P LGK Q
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 333 GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392
GL+ L+ +L+L NQL F L LG + ++ N+L+ T+L++L +
Sbjct: 57 GLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 393 GNFFQGNIPSSL-SSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK 451
GN + ++PS + L ++ L L+ N L + LQ L+LS N + VP
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VP-H 172
Query: 452 GVFS---NSSAISIDGNDNLCGGISELHLS 478
G F I++ GN C L+LS
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLS 202
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 15 LSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLSQLKRMLYLLLGVN 74
L+KL L + N L F + NQ L ++ L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 75 KLSGEIPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
+L +P +++ L+ L + + NQLQ S+P+ L NL+ L+L NQ +
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 134 SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175
L + + N F +IL+ +W+ + N + +G
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCEILYLSQWIRENSNKVKDG 215
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 22/174 (12%)
Query: 121 CRNQFTGPIPASISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRNHLGN---GK 176
C+ + +P+ I ++ +L + G + + + L KL W+ + N L G
Sbjct: 21 CQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 177 KDDLEFVNSLVNASRL----------ELLQISDNNFGG----MLPEAVGNLSTRLRILIV 222
DDL + +L A+ L Q+ GG LP V + T+L+ L +
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 223 GNNQLFGNIPSG-LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
NQL +IP+G L NL+ L L NQ G+ L KLQ + L GN+F
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 215 TRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273
T L L + NNQL ++P G+ +L L+ L+LGGNQ G L KL+ L L N
Sbjct: 83 TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIP----SSLGKCQ 311
+ + LT L TL+ N L+ S+P LGK Q
Sbjct: 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 333 GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392
GL+ L+ +L+L NQL F L LG + ++ N+L+ T+L++L +
Sbjct: 57 GLTKLT-WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115
Query: 393 GNFFQGNIPSSL-SSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK 451
GN + ++PS + L ++ L L+ N L + LQ L+LS N + VP
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VP-H 172
Query: 452 GVFS---NSSAISIDGNDNLCGGISELHLS 478
G F I++ GN C L+LS
Sbjct: 173 GAFDRLGKLQTITLFGNQFDCSRCETLYLS 202
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 5/162 (3%)
Query: 15 LSKLRILAMHRNNLSGEIPSSFGNXXXXXXXXXXXNQFVGQIPETLSQLKRMLYLLLGVN 74
L+KL L + N L F + NQ L ++ L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 75 KLSGEIPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASI 133
+L +P +++ L+ L + + NQLQ S+P+ L NL+ L+L NQ +
Sbjct: 118 QLKS-LPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 134 SNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175
L + + N F + L+ +W+ + N + +G
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCETLYLSQWIRENSNKVKDG 215
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 63 LKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCR 122
L + YL LG NKL ++ L++L Y+ + NQLQ SLP+ + L NL+ L L
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 123 NQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEF 182
NQ +NL L +A N L G D L
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQS--------------------LPKGVFDKL-- 156
Query: 183 VNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRN-LVNL 241
+ L L +S N LPE V + T+L+ L + NQL ++P G+ + L +L
Sbjct: 157 -------TNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSL 207
Query: 242 EFLHLGGNQFTGRIPG 257
+++ L N + PG
Sbjct: 208 QYIWLHDNPWDCTCPG 223
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 131 ASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNAS 190
A N N + +IA N V ++ L + ++ LG K D+ + L N +
Sbjct: 34 AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-----LGGNKLHDISALKELTNLT 88
Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHLGGN 249
L I N LP V + T L+ L++ NQL ++P G+ L NL +L+L N
Sbjct: 89 YL----ILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHN 143
Query: 250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS 305
Q G L L L L N+ LT L L +N L+ S+P
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 27/185 (14%)
Query: 217 LRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW 276
+R L +G N+L S L+ L NL +L L GNQ G L L+ L L N+
Sbjct: 65 VRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 277 GEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSS 336
LT L LN N L+ ++P V +
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQ-------------------------SLPKGVFDKLT 157
Query: 337 LSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFF 396
LDLS NQL F L L + + +N+L T L+ + ++ N +
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217
Query: 397 QGNIP 401
P
Sbjct: 218 DCTCP 222
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 32/214 (14%)
Query: 221 IVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP 280
I+ NN ++ G++ L N+ +L LGGN+ ++ +L L L L GN+ +P
Sbjct: 46 IIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL-QSLP 101
Query: 281 SSI-GNLTLLITLNFEENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVIGLSSLSI 339
+ + LT L L EN L+ ++P V +
Sbjct: 102 NGVFDKLTNLKELVLVENQLQ-------------------------SLPDGVFDKLTNLT 136
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
YL+L+ NQL F L NL +D+S N+L T+L+ L + N +
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 400 IPSSLSSLRGIENLDLSRNNLSGRIP--KYLENF 431
L ++ + L N P +YL +
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 59 TLSQLKRMLYLLLGVNKLSGEIPFSIYN-LSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117
L +L + YL+L N+L +P +++ L++L + + NQLQ SLP + L NL
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137
Query: 118 LNLCRNQFTGPIPASISNASNLMRLVIAKN 147
LNL NQ +NL L ++ N
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 9/142 (6%)
Query: 340 YLDLSQNQLNGPLPSN-FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
YL L+ NQL LP+ F L NL + + EN+L T L L + N Q
Sbjct: 89 YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS 458
L + LDLS N L + L++L L N + VP GVF +
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VP-DGVFDRLT 205
Query: 459 A---ISIDGN--DNLCGGISEL 475
+ I + N D C GI L
Sbjct: 206 SLQYIWLHDNPWDCTCPGIRYL 227
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
G+ + + ++D+S N+++ S + C L+ LV+ N S SSL +E+LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 417 RNNLSGRIPKYLENFPFLQNLNL 439
N LS + + L LNL
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNL 131
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 108/254 (42%), Gaps = 26/254 (10%)
Query: 56 IPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLS-SLNYICVPVNQLQGSLPSDLGFTLPN 114
+P TL M+++L + LS E + +LS N IC + S+PS L + +
Sbjct: 1 MPHTL----WMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKS 56
Query: 115 LEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRNHLG 173
L++ N N+ T + + NL LV+ NG + + S L LE + +S N+L
Sbjct: 57 LDLSN---NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP- 232
N + ++SL L + N + + ++ + T+L+IL VGN F I
Sbjct: 114 NLSSSWFKPLSSLT------FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK------FWGEIPSSIGNL 286
L LE L + + P S+ + + L L + + ++ SS+ L
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
Query: 287 TL----LITLNFEE 296
L L T +F E
Sbjct: 228 ELRDTDLDTFHFSE 241
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416
G+ + + ++D+S N+++ S + C L+ LV+ N S SSL +E+LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 417 RNNLSGRIPKYLENFPFLQNLNLSFNHFE--GEVPIKGVFSNSSAISI 462
N LS + + L LNL N ++ GE +FS+ + + I
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQI 127
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 21/206 (10%)
Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG-KVPSLKILHK 161
S+PS L + +L++ N N+ T + + NL LV+ NG + + S L
Sbjct: 19 SIPSGLTEAVKSLDLSN---NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 162 LEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILI 221
LE + +S N+L N + ++SL L + N + + ++ + T+L+IL
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLT------FLNLLGNPYKTLGETSLFSHLTKLQILR 129
Query: 222 VGNNQLFGNIP-SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK------ 274
VGN F I L LE L + + P S+ + + L L +
Sbjct: 130 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 189
Query: 275 FWGEIPSSIGNLTL----LITLNFEE 296
+ ++ SS+ L L L T +F E
Sbjct: 190 IFVDVTSSVECLELRDTDLDTFHFSE 215
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 46/289 (15%)
Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQ 250
L ++Q SD G L + +L +L + NN++ +NL NL L L N+
Sbjct: 32 HLRVVQCSD--LG--LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 251 FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKC 310
+ PG+ L KL+RL L N+ E+P + L L EN + S
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKT--LQELRVHENEITKVRKSVFN-- 142
Query: 311 QXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN--FGILKNLGAIDIS 368
GL+ + I ++L N L N F +K L I I+
Sbjct: 143 ----------------------GLNQM-IVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179
Query: 369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL 428
+ ++ IP G L +L ++GN +SL L + L LS N++S L
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 429 ENFPFLQNLNLSFNHFEGEVP--------IKGVFSNSSAISIDGNDNLC 469
N P L+ L+L+ N +VP I+ V+ +++ IS G+++ C
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHK 161
+P DL P+ +L+L N+ T N NL L++ N S P + L K
Sbjct: 45 KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 162 LEWVGISRNHLGNGKKDDLEFVNSLVNASRL---ELLQISDNNFGGMLPEAVGNLST--- 215
LE + +S+N L K+ E + + R+ E+ ++ + F G+ V L T
Sbjct: 102 LERLYLSKNQL----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Query: 216 --------------RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD 261
+L + + + + IP GL +L LHL GN+ T S+
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKG 214
Query: 262 LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
L L +L L N S+ N L L+ N L
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 120/289 (41%), Gaps = 46/289 (15%)
Query: 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQ 250
L ++Q SD G L + +L +L + NN++ +NL NL L L N+
Sbjct: 32 HLRVVQCSD--LG--LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87
Query: 251 FTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKC 310
+ PG+ L KL+RL L N+ E+P + L L EN + S
Sbjct: 88 ISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKT--LQELRVHENEITKVRKSVFN-- 142
Query: 311 QXXXXXXXXXXXXXGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN--FGILKNLGAIDIS 368
GL+ + I ++L N L N F +K L I I+
Sbjct: 143 ----------------------GLNQM-IVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179
Query: 369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL 428
+ ++ IP G L +L ++GN +SL L + L LS N++S L
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 429 ENFPFLQNLNLSFNHFEGEVP--------IKGVFSNSSAISIDGNDNLC 469
N P L+ L+L+ N +VP I+ V+ +++ IS G+++ C
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 31/218 (14%)
Query: 103 SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVP-SLKILHK 161
+P DL P+ +L+L N+ T N NL L++ N S P + L K
Sbjct: 45 KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101
Query: 162 LEWVGISRNHLGNGKKDDLEFVNSLVNASRL---ELLQISDNNFGGMLPEAVGNLST--- 215
LE + +S+N L K+ E + + R+ E+ ++ + F G+ V L T
Sbjct: 102 LERLYLSKNQL----KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Query: 216 --------------RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD 261
+L + + + + IP GL +L LHL GN+ T S+
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLP--PSLTELHLDGNKITKVDAASLKG 214
Query: 262 LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
L L +L L N S+ N L L+ N L
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 121 CRNQFTGPIPASISNASNLMRL------VIAKNGFSGKVPSLKILHKLEWVGISRNHLGN 174
C NQ IP I + +RL V+ G K+P L+ K+ + +
Sbjct: 18 CSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLR---KINFSNNKITDIEE 74
Query: 175 GKKDDLEFVNS-LVNASRLELLQISDNNFGGMLPEAVGNLSTRL-RILIVGNNQLFGNIP 232
G + VN L+ ++RLE +Q F G+ E++ L R RI VGN+ G
Sbjct: 75 GAFEGASGVNEILLTSNRLENVQ--HKMFKGL--ESLKTLMLRSNRITCVGNDSFIG--- 127
Query: 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKF 275
L ++ L L NQ T PG+ L+ L L L N F
Sbjct: 128 -----LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N E+P+ + N L L TL +EN L
Sbjct: 155 LANNNL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 83 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ NNL+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLT 162
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 96 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 155
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N E+P+ + N L L TL +EN L
Sbjct: 156 LANNNL-TELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N E+P+ + N L L TL +EN L
Sbjct: 155 LANNNL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N E+P+ + N L L TL +EN L
Sbjct: 155 LANNNL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N E+P+ + N L L TL +EN L
Sbjct: 155 LANNNL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 353 PSNFGILKNLGA-----IDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSL 407
P NF K L A D+S++K+ + S T LEQL + N ++ L
Sbjct: 264 PDNF-TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 408 RGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446
+ L+LS+N L + EN L+ L+LS+NH
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401
DLS++++ L S F +L + +++N+++ ++ T L +L ++ NF G+I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 402 SSL-SSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAI 460
S + +L +E LDLS N++ + P L+ L L N + VP G+F +++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VP-DGIFDRLTSL 397
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245
L N L L+ +S+N + ++ N+ T+L LI+ N+L P L +L L
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108
Query: 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI 279
L GN + G+ DL L LA+ N + +
Sbjct: 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL-RNLVNLEFLHL 246
+A+RLEL ++N LP V + T+L L + NQ+ ++P G+ L L L+L
Sbjct: 29 SATRLEL----ESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYL 83
Query: 247 GGNQFTGRIPGSIVD-LYKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIP 304
N+ +P + D L +L+ LAL+ N+ +P I LT L + N + S P
Sbjct: 84 HENKLQS-LPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 20/237 (8%)
Query: 54 GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLP 113
++ ETL LK + +NK++ E + + NL LN + N L G L S + LP
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN---LSYNLL-GELYSSNFYGLP 338
Query: 114 NLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-----FSGKVPSLKI----LHKLEW 164
+ ++L +N + L L + N F +P + + L L
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK 398
Query: 165 VGISRN--HLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222
+ ++ N HL + ++L+ + L+ L++L ++ N F + + + L L +
Sbjct: 399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458
Query: 223 GNNQLFGNIPSGL-----RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK 274
G N L + L L +L+ L+L N PG L L+ L+L N+
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 28/117 (23%)
Query: 213 LSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVD----------- 261
+ T +IL + +NQ+ P +L+NL+ L+LG NQ G +P + D
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLG 96
Query: 262 --------------LYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP 304
L L+ L + NK E+P I LT L L ++N L+ SIP
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIP 151
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGN 249
++L +L + N +LP AV + L+ L + N+L +P G+ L +L L L N
Sbjct: 88 TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQN 145
Query: 250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEI 279
Q G+ L L L GN + E
Sbjct: 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNDLT 161
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N E+P+ + N L L TL +EN L
Sbjct: 155 LANNDL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N+ E+P+ + N L L TL +EN L
Sbjct: 155 LANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N+ E+P+ + N L L TL +EN L
Sbjct: 155 LANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 138 NLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQI 197
NL+ L + N + P LK L K+ + +S N L N V+++ ++ L +
Sbjct: 70 NLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKN--------VSAIAGLQSIKTLDL 120
Query: 198 SDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPG 257
+ + P + LS L++L + NQ+ NI S L L NL++L +G NQ P
Sbjct: 121 TSTQITDVTP--LAGLS-NLQVLYLDLNQI-TNI-SPLAGLTNLQYLSIGNNQVNDLTP- 174
Query: 258 SIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP 304
+ +L KL L + NK P + +L LI ++ ++N + P
Sbjct: 175 -LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N+ E+P+ + N L L TL +EN L
Sbjct: 155 LANNQL-TELPAGLLNGLENLDTLLLQENSL 184
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 35/163 (21%)
Query: 334 LSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID---ISENKLSGQIPSSIGSCTRLEQLV 390
L +L++ LD+S N+L LP G L+ LG + + N+L P + +LE+L
Sbjct: 99 LPALTV-LDVSFNRLTS-LP--LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 391 MNGNFFQGNIPSSLSSLRGIENLD--LSRNNLSGRIPK-----------YLENFPFLQNL 437
+ N +P+ L L G+ENLD L + N IPK +L P+L N
Sbjct: 155 LANNQLT-ELPAGL--LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211
Query: 438 NLSFNH------------FEGEVPIKGVFSNSSAISIDGNDNL 468
+ + ++ V +K V SN +++ D +D
Sbjct: 212 EILYFRRWLQDNAENVYVWKQGVDVKAVTSNVASVQCDNSDKF 254
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS NQL LP L L +D+S N+L+ ++ L++L + GN +
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 401 PSSLSSLRGIENLDLSRNNLS 421
P L+ +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 210 VGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269
+G L +L V N+L LR L L+ L+L GN+ PG + KL++L+
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 270 LEGNKFWGEIPSSIGN-LTLLITLNFEENML 299
L N+ E+P+ + N L L TL +EN L
Sbjct: 155 LANNQL-TELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 206 LPEAVGNLSTRLRILIVGNNQLFGNIPSGLRN-LVNLEFLHLGGNQFTGRIPGSIVDLYK 264
LP V + T L L +G N+L ++P+G+ N L +L +L+L NQ G L +
Sbjct: 43 LPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 265 LQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP 304
L+ LAL N+ LT L L +N L+ S+P
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVP 140
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 31/147 (21%)
Query: 60 LSQLKRMLYLLLGVNKLSGEIPFSIYN-LSSLNYICVPVNQLQG---------------- 102
+L + L LG NKL +P ++N L+SL Y+ + NQLQ
Sbjct: 48 FDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 103 -------SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS 155
SLP + L L+ L L +NQ ++L + + N + P
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166
Query: 156 LKILHKLEWV----GISRNHLGNGKKD 178
++ L EW+ G+ RN G+ D
Sbjct: 167 IRYLS--EWINKHSGVVRNSAGSVAPD 191
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG 277
+ L+ N ++P+G+ + + L L NQ T PG L LQ+L NK
Sbjct: 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-T 70
Query: 278 EIPSSI-GNLTLLITLNFEENMLEGSIP 304
IP+ + LT L L+ +N L+ SIP
Sbjct: 71 AIPTGVFDKLTQLTQLDLNDNHLK-SIP 97
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 333 GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI-GSCTRLEQLVM 391
G+ + L L+ NQ+ P F L NL + + NKL+ IP+ + T+L QL +
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDL 88
Query: 392 NGNFFQGNIPSSLSSLRGIENLDLSRN--NLSGRIPKYLENF 431
N N + + +L+ + ++ L N + R YL N+
Sbjct: 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 341 LDLSQNQLNGPLPSNFGI--LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
LDLS N + + + L +L +++S N+ G + C +LE L +
Sbjct: 352 LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
Query: 399 NIPSS-LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
N P S +L ++ L+L+ L L P L++LNL NHF+
Sbjct: 412 NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 29/138 (21%)
Query: 333 GLSSLSIY-LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391
GL +S+ ++L +++ + S F + +D++ L+G +PS I L++LV+
Sbjct: 249 GLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVL 307
Query: 392 NGNFFQ-------GNIPS------------------SLSSLRGIENLDLSRNNL--SGRI 424
N N F + PS L L ++ LDLS +++ S
Sbjct: 308 NANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCC 367
Query: 425 PKYLENFPFLQNLNLSFN 442
L+N LQ LNLS+N
Sbjct: 368 NLQLKNLRHLQYLNLSYN 385
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENK-----LSGQ-IPSSIGSCTRLEQLVMN 392
+ +DLS N+L + F ++ L + IS N+ L GQ IP+ L+ L ++
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLS 309
Query: 393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
N ++ + +ENL L N++ + L L+NL LS N ++ ++
Sbjct: 310 HNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDCN-SLRA 364
Query: 453 VFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLI 496
+F N + ++D D C +L C + K R L+ I
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLN 293
G+ L NLE+L+L GNQ T P S +L KL L + NK S++ NLT L L
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD--ISALQNLTNLRELY 116
Query: 294 FEEN 297
E+
Sbjct: 117 LNED 120
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 27/203 (13%)
Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
L NLE LNL NQ T P +SN L L I N + + +L+ L L + ++ ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDN 121
Query: 172 LGN---------------GKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR 216
+ + G +L ++ L N + L L ++++ + P + NL T
Sbjct: 122 ISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANL-TD 178
Query: 217 LRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW 276
L L + NQ+ P L +L +L + NQ T P + + +L L + NK
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKIT 234
Query: 277 GEIPSSIGNLTLLITLNFEENML 299
P + NL+ L L N +
Sbjct: 235 DLSP--LANLSQLTWLEIGTNQI 255
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 228 FGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNL 286
++P+G+ + L+L NQ T PG L +L RL L+ N+ +P+ + L
Sbjct: 21 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKL 77
Query: 287 TLLITLNFEENMLEGSIP 304
T L L+ +N L+ SIP
Sbjct: 78 TQLTQLSLNDNQLK-SIP 94
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 228 FGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSI-GNL 286
++P+G+ + L+L NQ T PG L +L RL L+ N+ +P+ + L
Sbjct: 29 LASVPTGIPTTT--QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKL 85
Query: 287 TLLITLNFEENMLEGSIP 304
T L L+ +N L+ SIP
Sbjct: 86 TQLTQLSLNDNQLK-SIP 102
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISEN--------KLSGQIPSSIGSCTR-----L 386
YLD +GPLP G+ ++G D KL + +S+ + + L
Sbjct: 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEEL 220
Query: 387 EQLVMNGNFFQGNIPSSLSSLRG--IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
EQ+V F + S +S I L +L+ RI K LEN +QN +
Sbjct: 221 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 280
Query: 445 E 445
E
Sbjct: 281 E 281
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISEN--------KLSGQIPSSIGSCTR-----L 386
YLD +GPLP G+ ++G D KL + +S+ + + L
Sbjct: 152 YLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEEL 211
Query: 387 EQLVMNGNFFQGNIPSSLSSLRG--IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
EQ+V F + S +S I L +L+ RI K LEN +QN +
Sbjct: 212 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 271
Query: 445 E 445
E
Sbjct: 272 E 272
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
+DLS N L +F L +D+S ++ + L L++ GN Q
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFNHFEGEVPIKGVFS 455
P S S L +ENL L+ LE+FP L+ LN++ N F + FS
Sbjct: 97 PGSFSGLTSLENLVAVETKLAS-----LESFPIGQLITLKKLNVAHN-FIHSCKLPAYFS 150
Query: 456 N-SSAISIDGNDNLCGGIS 473
N ++ + +D + N I+
Sbjct: 151 NLTNLVHVDLSYNYIQTIT 169
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
+DLS N L +F L +D+S ++ + L L++ GN Q
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFNHFEGEVPIKGVFS 455
P S S L +ENL L+ LE+FP L+ LN++ N F + FS
Sbjct: 92 PGSFSGLTSLENLVAVETKLAS-----LESFPIGQLITLKKLNVAHN-FIHSCKLPAYFS 145
Query: 456 N-SSAISIDGNDNLCGGIS 473
N ++ + +D + N I+
Sbjct: 146 NLTNLVHVDLSYNYIQTIT 164
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG---NFFQGNIPSSLSSLRGIENL 413
G+ + ++D+S NK++ + +C L+ L++ N +G+ SL SL E+L
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHL 105
Query: 414 DLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
DLS N+LS + L+ LNL N ++
Sbjct: 106 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISEN--------KLSGQIPSSIGSCTR-----L 386
YLD +GPLP G+ ++G D KL + +S+ + + L
Sbjct: 160 YLDQKLGGSSGPLPQVIGLTASVGVGDAKNTDEALDYICKLCASLDASVIATVKHNLEEL 219
Query: 387 EQLVMNGNFFQGNIPSSLSSLRG--IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444
EQ+V F + S +S I L +L+ RI K LEN +QN +
Sbjct: 220 EQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKY 279
Query: 445 E 445
E
Sbjct: 280 E 280
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 357 GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG---NFFQGNIPSSLSSLRGIENL 413
G+ + ++D+S NK++ + +C L+ L++ N +G+ SL SL E+L
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHL 79
Query: 414 DLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445
DLS N+LS + L+ LNL N ++
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 89/236 (37%), Gaps = 66/236 (27%)
Query: 121 CRNQFTG---------PIPASISNASNLMRLVIAKNGFSG-KVPSLKILHKLEWVGISRN 170
C NQF+ +P IS + L+ L +N KV S K L LE + +SRN
Sbjct: 41 CSNQFSKVICVRKNLREVPDGISTNTRLLNL--HENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 171 HLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQL--- 227
H+ + ++ N L N + LEL DN +P ++L+ L + NN +
Sbjct: 99 HI---RTIEIGAFNGLANLNTLELF---DNRL-TTIPNGAFVYLSKLKELWLRNNPIESI 151
Query: 228 ----FGNIPS---------------------GLRN-------------------LVNLEF 243
F IPS GL N L+ L+
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDE 211
Query: 244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENML 299
L L GN + PGS L LQ+L + ++ ++ NL L+ +N N L
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 8/219 (3%)
Query: 206 LPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKL 265
L E +ST R+L + NQ+ + ++L +LE L L N G+ L L
Sbjct: 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 266 QRLALEGNKFWGEIPS-SIGNLTLLITLNFEENMLEGSIPS-SLGKCQXXXXXXXXXXXX 323
L L N+ IP+ + L+ L L N +E SIPS + +
Sbjct: 115 NTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172
Query: 324 XGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGS 382
I GLS+L YL+L+ L +P N L L +D+S N LS P S
Sbjct: 173 LSYISEGAFEGLSNLR-YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229
Query: 383 CTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421
L++L M + Q ++ +L+ + ++L+ NNL+
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394
LP+ L NL +D+S N+L+ +P+ +GSC +L+ N
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN 303
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 30/160 (18%)
Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
LPNL LNL NQ T P I N+ +L + N + P L L L W+ + N
Sbjct: 65 LPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 121
Query: 172 L------------------GNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL 213
+ NG D +N LV+ +LE L + +N + V +
Sbjct: 122 VKDLSSLKDLKKLKSLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI---TVLSR 174
Query: 214 STRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253
T+L L + +NQ+ +P L L L+ L+L N +
Sbjct: 175 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 212
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR 254
L ++DN G + + + L L + NQL G P+ +++ L LG N+
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297
+ L++L+ L L N+ +P S +L L +LN N
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 102 GSLPSDLGF-TLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKI-- 158
G + SD F LP+L L L RNQ TG P + AS++ L + +N K S K+
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI--KEISNKMFL 99
Query: 159 -LHKLEWVGISRNHLGNGKKDDLEFVNSLV 187
LH+L+ + + N + E +NSL
Sbjct: 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 24/137 (17%)
Query: 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQG 398
+ L+L +NQL G P+ F ++ + + ENK+ ++ F G
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK----------------EISNKMFLG 100
Query: 399 NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS 458
L ++ L+L N +S +P E+ L +LNL+ N F +
Sbjct: 101 --------LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152
Query: 459 AISIDGNDNLCGGISEL 475
S++G CG S++
Sbjct: 153 KKSLNGGAARCGAPSKV 169
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 62 QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLC 121
+L ++ L L N+L+G P + S + + + N+++ + + + L L+ LNL
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110
Query: 122 RNQFTGPIPASISNASNLMRLVIAKNGF 149
NQ + +P S + ++L L +A N F
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|4DB3|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of
N-Acetyl-D-Glucosamine Kinase From Vibrio Vulnificus
Length = 327
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 364 AIDISENKLSGQIPSSIGSCTRLEQLVMN-GNFFQGNIPSSLSSLRGIENLDLSRNNLSG 422
AIDI + +G ++ +E L + GN F N P ++ G+ N +L +
Sbjct: 232 AIDIIKANAAGDEKAAEHVERFMELLAICFGNIFTANDPHVVALGGGLSNFELIYEEMPK 291
Query: 423 RIPKYL 428
R+PKYL
Sbjct: 292 RVPKYL 297
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTR 385
+P E+ S + LDL N ++ +F L++L A+ + NK+S + +
Sbjct: 47 AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103
Query: 386 LEQLVMNGNFF---QGNIPSSLSSLRGIEN 412
L++L ++ N N+PSSL LR +N
Sbjct: 104 LQKLYISKNHLVEIPPNLPSSLVELRIHDN 133
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 137 SNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGN-------------GKKDDLEFV 183
+NL L ++ N S P LK L KLE + ++RN L N ++L
Sbjct: 63 TNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT 121
Query: 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEF 243
+SL++ LE+L I +N ++ +G LS +L +L + N++ GL L + +
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIV--MLGFLS-KLEVLDLHGNEITNT--GGLTRLKKVNW 176
Query: 244 LHLGGNQ 250
+ L G +
Sbjct: 177 IDLTGQK 183
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS N L +F L +D+S ++ + S + L L++ GN Q
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFN 442
+ S L ++ L NL+ LENFP L+ LN++ N
Sbjct: 95 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHN 136
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS N L +F L +D+S ++ + S + L L++ GN Q
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFN 442
+ S L ++ L NL+ LENFP L+ LN++ N
Sbjct: 94 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHN 135
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
+ L QN + P F K L ID+S N++S P + L LV+ GN +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLN-LSFNHFEGEVPIKGVFSNSSA 459
P SL G+ +L L N + ++ F L NLN LS + + KG FS A
Sbjct: 96 PKSL--FEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 460 I 460
I
Sbjct: 154 I 154
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENK-----LSGQ-IPSSIGSCTRLEQLVMN 392
+ +DLS N+L + F ++ L + IS N+ L GQ IP+ L+ L ++
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKVLDLS 303
Query: 393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452
N ++ + +ENL L N++ + L L+NL LS N ++ ++
Sbjct: 304 HNHL-LHVERNQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDCN-SLRA 358
Query: 453 VFSNSSAISIDGNDNLCGGISELHLSTCSIKES 485
+F N + ++D D C +L C KES
Sbjct: 359 LFRNVARPAVDDADQHCKIDYQLEHGLCC-KES 390
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
+ L QN + P F K L ID+S N++S P + L LV+ GN +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLN-LSFNHFEGEVPIKGVFSNSSA 459
P SL G+ +L L N + ++ F L NLN LS + + KG FS A
Sbjct: 96 PKSL--FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 460 I 460
I
Sbjct: 154 I 154
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 341 LDLSQNQLNGPLPSNFGI--LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ- 397
LDLS + + N + L +L ++++S N+ + C +LE L + +
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNS 457
+ S +L ++ L+LS + L + + P LQ+LNL NHF KG +
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP-----KGNIQKT 469
Query: 458 SAISIDGNDNLCGGISELHLSTCSIKESKQSRSRSLKLI 496
+++ G + L LS C + Q SLK++
Sbjct: 470 NSLQT------LGRLEILVLSFCDLSSIDQHAFTSLKMM 502
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS N L +F L +D+S ++ + S + L L++ GN Q
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFN 442
+ S L ++ L NL+ LENFP L+ LN++ N
Sbjct: 93 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHN 134
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS N L +F L +D+S ++ + S + L L++ GN Q
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFN 442
+ S L ++ L NL+ LENFP L+ LN++ N
Sbjct: 94 LGAFSGLSSLQKLVAVETNLAS-----LENFPIGHLKTLKELNVAHN 135
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 13/202 (6%)
Query: 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171
L NL+ L + N + S ++L +L + K + +P+ + H + + H
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRH 185
Query: 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNF-GGMLPEAVGNLSTRLRILIVGNNQLFGN 230
L D F RL++L+IS + M P + L+ L L + + L
Sbjct: 186 LNINAIRDYSFKR----LYRLKVLEISHWPYLDTMTPNCLYGLN--LTSLSITHCNLTAV 239
Query: 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGSIV-DLYKLQRLALEGNKFWGEIPSSIGNLTLL 289
+R+LV L FL+L N + I GS++ +L +LQ + L G + P + L L
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 290 ITLNFEENM---LEGSIPSSLG 308
LN N LE S+ S+G
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVG 320
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 29/203 (14%)
Query: 221 IVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP 280
++ + + F +P G+ L L LG N+ L+ L L N P
Sbjct: 16 VLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 281 SSIGNLTLLITLNFEENMLEGSIPSSLGKCQXXXXXXXXXXXXXGTIPTEVI-GLSSLSI 339
+ NL L TL N L+ IP V GLS+L+
Sbjct: 74 GAFNNLFNLRTLGLRSNRLK-------------------------LIPLGVFTGLSNLT- 107
Query: 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399
LD+S+N++ L F L NL ++++ +N L + LEQL +
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Query: 400 IPSSLSSLRGIENLDLSRNNLSG 422
+LS L G+ L L N++
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINA 190
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 14/148 (9%)
Query: 325 GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCT 384
++PT G+ + + L L N++ P F L L +D+ N+L+ T
Sbjct: 22 ASVPT---GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 385 RLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR------IPKYLENFPFLQNLN 438
+L QL +N N + + +LR + ++ L N + +++ P+L
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQHPWLVFGY 138
Query: 439 LSFNHFEGEV-----PIKGVFSNSSAIS 461
L+ +H P++ V S++ S
Sbjct: 139 LNLDHDSARCSGTNTPVRAVTKASTSPS 166
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400
LDLS N L +F L +D+S ++ + S + L L++ GN Q
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPF-----LQNLNLSFN 442
+ S L ++ L NL+ LENFP L+ LN++ N
Sbjct: 95 LGAFSGLSSLQKLVALETNLAS-----LENFPIGHLKTLKELNVAHN 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,072,440
Number of Sequences: 62578
Number of extensions: 585337
Number of successful extensions: 1735
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 395
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)