Query 040833
Match_columns 503
No_of_seqs 275 out of 3690
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 12:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040833.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040833hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.7E-54 1E-58 466.6 33.7 470 2-481 150-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 1E-51 2.3E-56 448.2 33.2 459 2-469 79-585 (968)
3 KOG4194 Membrane glycoprotein 100.0 1E-41 2.3E-46 316.9 6.3 408 42-460 54-467 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.5E-39 3.1E-44 302.7 7.4 396 66-471 54-455 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 4.2E-41 9.1E-46 299.7 -12.3 436 10-468 62-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 7.9E-38 1.7E-42 278.8 -15.9 447 16-486 45-544 (565)
7 KOG0618 Serine/threonine phosp 100.0 5.6E-35 1.2E-39 286.1 -4.0 427 13-469 42-490 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 2.4E-34 5.1E-39 270.3 -3.0 370 62-449 5-379 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 2.1E-34 4.6E-39 270.5 -3.4 372 87-473 6-380 (1255)
10 KOG0618 Serine/threonine phosp 100.0 9.1E-34 2E-38 277.6 -7.5 455 8-490 13-496 (1081)
11 KOG4237 Extracellular matrix p 99.9 6.2E-28 1.3E-32 215.5 -3.3 274 18-298 69-357 (498)
12 KOG4237 Extracellular matrix p 99.9 7.9E-28 1.7E-32 214.8 -2.9 299 22-324 52-359 (498)
13 PLN03210 Resistant to P. syrin 99.9 1.7E-23 3.6E-28 228.2 29.1 339 83-443 553-904 (1153)
14 PLN03210 Resistant to P. syrin 99.9 8E-24 1.7E-28 230.6 26.0 337 34-394 552-903 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 3E-19 6.5E-24 181.4 17.6 259 114-423 202-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.9E-19 1.1E-23 179.9 17.4 262 137-449 201-462 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 5.5E-20 1.2E-24 175.0 2.1 251 216-467 24-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 6.3E-20 1.4E-24 174.6 1.1 210 234-444 76-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 4.3E-18 9.3E-23 174.1 11.8 248 192-471 180-431 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 2.1E-17 4.5E-22 169.2 12.7 225 191-445 200-428 (754)
21 KOG0617 Ras suppressor protein 99.6 3E-18 6.4E-23 136.4 -5.7 158 12-174 29-187 (264)
22 KOG0617 Ras suppressor protein 99.6 3.4E-18 7.3E-23 136.1 -5.8 176 287-468 33-212 (264)
23 KOG1909 Ran GTPase-activating 99.3 5.3E-13 1.1E-17 118.9 -0.1 239 184-444 24-310 (382)
24 KOG1909 Ran GTPase-activating 99.2 3.5E-13 7.6E-18 120.0 -2.8 184 216-420 93-310 (382)
25 PLN03150 hypothetical protein; 99.2 1.8E-11 3.8E-16 125.4 8.4 118 361-481 419-538 (623)
26 KOG1259 Nischarin, modulator o 99.2 3.5E-12 7.5E-17 111.3 2.5 134 309-449 282-416 (490)
27 KOG0532 Leucine-rich repeat (L 99.2 4.8E-13 1E-17 126.3 -4.4 171 265-445 77-247 (722)
28 KOG3207 Beta-tubulin folding c 99.2 2.3E-12 4.9E-17 118.1 -0.5 213 236-449 118-343 (505)
29 KOG3207 Beta-tubulin folding c 99.2 3.4E-12 7.3E-17 117.0 0.3 209 38-252 119-339 (505)
30 KOG1259 Nischarin, modulator o 99.2 8.9E-12 1.9E-16 108.8 2.7 198 216-423 215-414 (490)
31 COG4886 Leucine-rich repeat (L 99.2 4.7E-11 1E-15 116.9 7.5 198 219-426 97-295 (394)
32 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.7E-16 101.9 3.8 104 339-446 22-127 (175)
33 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 99.7 4.3 123 41-168 20-148 (175)
34 COG4886 Leucine-rich repeat (L 99.1 1.5E-10 3.2E-15 113.4 7.8 200 194-404 97-297 (394)
35 KOG0532 Leucine-rich repeat (L 99.1 3.4E-12 7.4E-17 120.7 -4.1 192 20-228 54-247 (722)
36 KOG4658 Apoptotic ATPase [Sign 99.1 8.3E-11 1.8E-15 123.0 4.0 131 14-148 521-653 (889)
37 PLN03150 hypothetical protein; 99.0 5.4E-10 1.2E-14 114.5 9.1 112 338-449 420-532 (623)
38 KOG4658 Apoptotic ATPase [Sign 99.0 1.4E-10 3E-15 121.4 3.3 84 84-169 567-651 (889)
39 PF13855 LRR_8: Leucine rich r 99.0 2.3E-10 4.9E-15 78.7 3.3 61 384-444 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 99.0 4.7E-10 1E-14 77.2 3.3 61 360-420 1-61 (61)
41 KOG1859 Leucine-rich repeat pr 98.8 2.6E-10 5.6E-15 111.2 -5.0 182 280-471 102-295 (1096)
42 KOG0531 Protein phosphatase 1, 98.8 1.4E-09 3.1E-14 106.6 0.0 244 189-448 71-321 (414)
43 KOG0531 Protein phosphatase 1, 98.7 2.7E-09 5.8E-14 104.7 -0.9 243 159-423 71-320 (414)
44 KOG2120 SCF ubiquitin ligase, 98.7 5.1E-10 1.1E-14 97.9 -5.3 179 114-299 186-375 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.6 4.2E-09 9.2E-14 91.0 -1.3 195 233-447 86-318 (388)
46 KOG1859 Leucine-rich repeat pr 98.6 1.4E-09 3.1E-14 106.1 -4.8 197 239-446 84-293 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.5 9.7E-10 2.1E-14 96.2 -7.5 177 137-321 185-373 (419)
48 KOG2982 Uncharacterized conser 98.4 4.4E-08 9.6E-13 86.0 -1.6 85 62-147 69-156 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.3 5.4E-08 1.2E-12 84.4 -1.9 190 136-325 29-256 (388)
50 KOG1644 U2-associated snRNP A' 98.3 1E-06 2.3E-11 73.2 5.1 103 339-443 45-151 (233)
51 KOG2982 Uncharacterized conser 98.2 3.8E-07 8.2E-12 80.3 1.5 185 112-301 70-263 (418)
52 KOG1644 U2-associated snRNP A' 98.2 2.2E-06 4.8E-11 71.3 5.5 122 339-463 22-148 (233)
53 PF13306 LRR_5: Leucine rich r 98.2 6.5E-06 1.4E-10 66.5 7.1 126 8-140 4-129 (129)
54 KOG4341 F-box protein containi 98.1 6.2E-08 1.3E-12 89.1 -6.4 297 161-462 139-459 (483)
55 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.8E-12 73.4 -3.8 60 264-324 54-113 (177)
56 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.3E-12 72.3 -3.3 59 361-421 78-136 (177)
57 PF12799 LRR_4: Leucine Rich r 98.0 4.7E-06 1E-10 52.2 3.2 36 385-421 2-37 (44)
58 KOG4341 F-box protein containi 98.0 1E-07 2.3E-12 87.6 -6.2 84 41-124 139-227 (483)
59 KOG3665 ZYG-1-like serine/thre 97.9 2.6E-06 5.6E-11 87.5 0.8 156 64-221 122-281 (699)
60 PRK15386 type III secretion pr 97.9 7.8E-05 1.7E-09 70.7 10.3 188 283-496 48-242 (426)
61 PF12799 LRR_4: Leucine Rich r 97.9 7.3E-06 1.6E-10 51.3 2.4 40 408-448 1-40 (44)
62 PF13306 LRR_5: Leucine rich r 97.9 4.8E-05 1E-09 61.4 7.6 38 282-320 7-44 (129)
63 PRK15386 type III secretion pr 97.9 6.9E-05 1.5E-09 71.1 8.8 32 360-394 156-187 (426)
64 KOG3665 ZYG-1-like serine/thre 97.7 2E-05 4.3E-10 81.1 2.0 137 190-328 122-267 (699)
65 KOG2739 Leucine-rich acidic nu 97.4 7.1E-05 1.5E-09 65.3 2.1 105 38-145 41-151 (260)
66 KOG2123 Uncharacterized conser 97.0 1.7E-05 3.7E-10 69.4 -5.8 82 15-101 18-101 (388)
67 KOG2739 Leucine-rich acidic nu 97.0 0.00056 1.2E-08 59.9 3.0 101 339-441 46-152 (260)
68 KOG2123 Uncharacterized conser 97.0 2.5E-05 5.5E-10 68.4 -5.3 102 38-143 17-123 (388)
69 KOG1947 Leucine rich repeat pr 96.6 0.00018 3.9E-09 72.7 -3.4 185 215-410 188-389 (482)
70 KOG1947 Leucine rich repeat pr 96.4 0.00049 1.1E-08 69.5 -1.4 63 188-250 241-306 (482)
71 PF00560 LRR_1: Leucine Rich R 95.1 0.011 2.3E-07 30.6 1.1 19 66-85 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.01 2.2E-07 30.7 0.8 11 411-421 3-13 (22)
73 KOG3864 Uncharacterized conser 94.9 0.0028 6.2E-08 53.3 -2.3 80 339-418 104-186 (221)
74 KOG4308 LRR-containing protein 94.7 0.00012 2.6E-09 72.2 -13.0 163 236-398 112-304 (478)
75 KOG0473 Leucine-rich repeat pr 93.2 0.002 4.3E-08 55.3 -6.5 88 355-445 37-124 (326)
76 KOG0473 Leucine-rich repeat pr 93.1 0.0018 3.8E-08 55.6 -6.9 86 12-100 38-123 (326)
77 PF13504 LRR_7: Leucine rich r 92.2 0.096 2.1E-06 25.0 1.3 14 16-29 1-14 (17)
78 smart00370 LRR Leucine-rich re 91.4 0.15 3.3E-06 27.4 1.7 16 408-423 2-17 (26)
79 smart00369 LRR_TYP Leucine-ric 91.4 0.15 3.3E-06 27.4 1.7 16 408-423 2-17 (26)
80 KOG4308 LRR-containing protein 90.8 0.0015 3.3E-08 64.5 -11.6 89 189-277 203-304 (478)
81 KOG3864 Uncharacterized conser 89.2 0.049 1.1E-06 46.1 -2.1 36 287-322 101-136 (221)
82 smart00369 LRR_TYP Leucine-ric 89.2 0.41 8.9E-06 25.7 2.2 21 384-404 2-22 (26)
83 smart00370 LRR Leucine-rich re 89.2 0.41 8.9E-06 25.7 2.2 21 384-404 2-22 (26)
84 PF13516 LRR_6: Leucine Rich r 88.3 0.14 3E-06 27.0 -0.1 13 409-421 3-15 (24)
85 KOG4242 Predicted myosin-I-bin 82.3 5.6 0.00012 38.7 7.3 58 386-443 415-479 (553)
86 TIGR00864 PCC polycystin catio 77.5 1.2 2.6E-05 52.7 1.6 45 414-458 1-45 (2740)
87 smart00365 LRR_SD22 Leucine-ri 75.8 2.5 5.5E-05 22.8 1.8 14 408-421 2-15 (26)
88 smart00368 LRR_RI Leucine rich 69.5 2.4 5.3E-05 23.2 0.8 13 385-397 3-15 (28)
89 KOG3763 mRNA export factor TAP 65.3 3.5 7.7E-05 40.8 1.6 37 87-123 217-254 (585)
90 smart00364 LRR_BAC Leucine-ric 63.5 5.4 0.00012 21.5 1.4 18 16-34 2-19 (26)
91 TIGR00864 PCC polycystin catio 62.0 4.6 9.9E-05 48.2 1.9 35 438-472 1-36 (2740)
92 KOG3763 mRNA export factor TAP 60.2 5.2 0.00011 39.7 1.7 63 358-421 216-283 (585)
93 smart00367 LRR_CC Leucine-rich 55.0 9.1 0.0002 20.4 1.4 11 408-418 2-12 (26)
94 KOG4242 Predicted myosin-I-bin 43.0 81 0.0018 31.2 6.5 61 216-276 414-481 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-54 Score=466.59 Aligned_cols=470 Identities=40% Similarity=0.647 Sum_probs=342.0
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC
Q 040833 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP 81 (503)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 81 (503)
|.+++.+|..++++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 229 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP 229 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCC
Q 040833 82 FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILH 160 (503)
Q Consensus 82 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~ 160 (503)
..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. +..++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 55555555555555555555455554443 55556666655555555555555555666666665555544444 55556
Q ss_pred CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC
Q 040833 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240 (503)
Q Consensus 161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 240 (503)
+|+.|++++|.+.. ..+..+..+++|+.|++++|.+.+..|..+...+ +|+.+++++|.+.+..|..+..+++
T Consensus 309 ~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~ 381 (968)
T PLN00113 309 NLEILHLFSNNFTG------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGN 381 (968)
T ss_pred CCcEEECCCCccCC------cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCC
Confidence 66666666655544 3334455566677777777766666666666664 6777777777766666666666677
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN 320 (503)
Q Consensus 241 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 320 (503)
|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..++.|+.+++++|.+.+..+..+..+++|++|++++
T Consensus 382 L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 77777777777767777777778888888888888777777788888888888888888777777777788888888888
Q ss_pred CcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 040833 321 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400 (503)
Q Consensus 321 n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 400 (503)
|.+.+..|..+ ..+.+ +.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+
T Consensus 462 n~~~~~~p~~~-~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred ceeeeecCccc-ccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 88877666654 34566 89999999999888989999999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCCCCC
Q 040833 401 PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480 (503)
Q Consensus 401 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~ 480 (503)
|..|..+++|+.|++++|++++..|..+..+++|+.+++++|++.+..|..+.+..+....+.|||.+|+..+...++.|
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c 619 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPC 619 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCC
Confidence 99999999999999999999999999999999999999999999999998888888888889999999987655566666
Q ss_pred C
Q 040833 481 S 481 (503)
Q Consensus 481 ~ 481 (503)
.
T Consensus 620 ~ 620 (968)
T PLN00113 620 K 620 (968)
T ss_pred c
Confidence 4
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-51 Score=448.23 Aligned_cols=459 Identities=35% Similarity=0.559 Sum_probs=250.2
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccC-CCCCCCEEECCCCcccc----------------------CCCc
Q 040833 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFG-NLSSLEALSASANQFVG----------------------QIPE 58 (503)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n~i~~----------------------~~~~ 58 (503)
|.+++.++.+|..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+ ..|.
T Consensus 79 ~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~ 158 (968)
T PLN00113 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN 158 (968)
T ss_pred CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh
Confidence 455666666666667777777766666655554432 55555555555555543 3344
Q ss_pred cccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 040833 59 TLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASN 138 (503)
Q Consensus 59 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 138 (503)
.+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+++..|..+..+++
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred HHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCC
Confidence 4444444444444444444444444444444444444444444444444432 444444444444444444444444455
Q ss_pred CCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccC
Q 040833 139 LMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRL 217 (503)
Q Consensus 139 L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 217 (503)
|++|++++|.+.+..+. +..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.+..|..+..++ +|
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L 310 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG------PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NL 310 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeec------cCchhHhhccCcCEEECcCCeeccCCChhHcCCC-CC
Confidence 55555554444433332 4444445555554444432 2223333444455555555554444444444443 45
Q ss_pred cEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833 218 RILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297 (503)
Q Consensus 218 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 297 (503)
+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 55555555444444444444555555555555544444444444455555555555444444444444444444444444
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc-------------------
Q 040833 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI------------------- 358 (503)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~------------------- 358 (503)
.+.+..|..+..+++|++|++++|++.+..|..+..++.+ +.+++++|.+.+..+..+..
T Consensus 391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred EecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 4443444444444555555555555544444444444444 44444444444333332222
Q ss_pred ----CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833 359 ----LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL 434 (503)
Q Consensus 359 ----~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 434 (503)
.++|+.|++++|++++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+++..|..+..+++|
T Consensus 470 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 549 (968)
T PLN00113 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549 (968)
T ss_pred cccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence 3456666666666666666667777777777888777777777777777888888888888877777777788888
Q ss_pred CeeecCCCcCcccCCC-CCccCCCCceeccCCCCCc
Q 040833 435 QNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLC 469 (503)
Q Consensus 435 ~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c 469 (503)
+.|++++|++++..|. ...+++|+.+++++|+..+
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 8888888888776553 4446777788888776554
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-41 Score=316.91 Aligned_cols=408 Identities=22% Similarity=0.211 Sum_probs=341.8
Q ss_pred CCEEECCCCccccCCCccccCCC--CCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEE
Q 040833 42 LEALSASANQFVGQIPETLSQLK--RMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119 (503)
Q Consensus 42 L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 119 (503)
-..|+.++..+....-..+..+- .-+.|++++|++....+..|.++++|+.+++.+|.++ .+|.... ....|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEe
Confidence 45577777766543333344333 3345888888888777777888888888888888886 7776443 255688888
Q ss_pred ccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833 120 LCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS 198 (503)
Q Consensus 120 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 198 (503)
+.+|.|+....+.++.++.|+.|||+.|.++..... +..-.++++|+++.|.|+.... ..|..+.+|.+|.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~------~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET------GHFDSLNSLLTLKLS 205 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc------ccccccchheeeecc
Confidence 888888877777788888888888888888765544 6677889999999999887443 455556789999999
Q ss_pred CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833 199 DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE 278 (503)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 278 (503)
.|.++...+..|.++| +|+.|++..|++...-.-.|.++++|+.|.+..|.+....+.+|..+.++++|++..|++...
T Consensus 206 rNrittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCcccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 9999966677777787 899999999998755455789999999999999999988889999999999999999999988
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833 279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI 358 (503)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~ 358 (503)
...++-+++.|+.|++++|.|..+.+++++.+++|++|+++.|+++...+..+..+..+ ++|+|++|.+.......|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHH
Confidence 88889999999999999999999999999999999999999999997778888888888 99999999999877788999
Q ss_pred CCCCCeEeCCCCcccccC---CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCC
Q 040833 359 LKNLGAIDISENKLSGQI---PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ 435 (503)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~---~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 435 (503)
+.+|++|||++|.+...+ ...|.++++|++|++.+|++..+...+|.+++.|++|||.+|.|..+.+++|..+ .|+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 999999999999987533 3468889999999999999998888899999999999999999998999999999 899
Q ss_pred eeecCCCcCcccCCCCCccCCCCce
Q 040833 436 NLNLSFNHFEGEVPIKGVFSNSSAI 460 (503)
Q Consensus 436 ~L~l~~n~l~~~~~~~~~~~~l~~l 460 (503)
+|-+..-.+.|++...|..++|...
T Consensus 443 ~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 443 ELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred hhhhcccceEEeccHHHHHHHHHhc
Confidence 9999999999888877766666443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-39 Score=302.69 Aligned_cols=396 Identities=21% Similarity=0.212 Sum_probs=331.2
Q ss_pred CCEEEcccceeeeeCCccccCC--CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEe
Q 040833 66 MLYLLLGVNKLSGEIPFSIYNL--SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLV 143 (503)
Q Consensus 66 L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 143 (503)
-+.|+.+++.+.......+.+. +.-+.|++++|++. .+...++..+++|+++++..|.++ .+|..-....+++.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 4668888888875444444444 34456999999998 555555566999999999999998 7888777788899999
Q ss_pred cccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEe
Q 040833 144 IAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIV 222 (503)
Q Consensus 144 l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 222 (503)
|..|.+...... +..++.|+.|+++.|.++..... .+..-.++++|++++|.|+......|..+. +|..|.+
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~------sfp~~~ni~~L~La~N~It~l~~~~F~~ln-sL~tlkL 204 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP------SFPAKVNIKKLNLASNRITTLETGHFDSLN-SLLTLKL 204 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCC------CCCCCCCceEEeeccccccccccccccccc-hheeeec
Confidence 999999876554 88899999999999999874433 444457899999999999987777888875 8999999
Q ss_pred eccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCccc
Q 040833 223 GNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS 302 (503)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 302 (503)
+.|+++...+..|..+++|+.|++..|++....-..|.+++.|+.|.+..|.+.......|..+.++++|++..|++...
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 99999977777889999999999999998855466889999999999999999988888899999999999999999988
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccC
Q 040833 303 IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGS 382 (503)
Q Consensus 303 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 382 (503)
...++.++++|+.|++++|.|...-+..+.-.+++ +.|+|++|+|+...+..|..+..|++|.|+.|+++..-..+|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL-~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL-KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccc-eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 88889999999999999999987777888888888 89999999999888888999999999999999998766778889
Q ss_pred CCCCCEEECCCCcCcccC---chhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCc
Q 040833 383 CTRLEQLVMNGNFFQGNI---PSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSA 459 (503)
Q Consensus 383 ~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 459 (503)
+++|++|||++|.+...+ ...|.++++|+.|++.+|+++.+.-.+|..++.|++|||.+|.+-.+-|..-.--.|+.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~ 443 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE 443 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence 999999999999887543 45688999999999999999977778899999999999999999876552211126667
Q ss_pred eeccCCCCCccc
Q 040833 460 ISIDGNDNLCGG 471 (503)
Q Consensus 460 l~~~~n~~~c~~ 471 (503)
|-+..-..+|+|
T Consensus 444 Lv~nSssflCDC 455 (873)
T KOG4194|consen 444 LVMNSSSFLCDC 455 (873)
T ss_pred hhhcccceEEec
Confidence 777666777864
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-41 Score=299.66 Aligned_cols=436 Identities=30% Similarity=0.420 Sum_probs=361.8
Q ss_pred cccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCC
Q 040833 10 GKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSS 89 (503)
Q Consensus 10 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 89 (503)
..+.++..+.+|++++|++. ..|.+++.+..++.++.++|++. .+|..+..+..|+++++++|++. .+++.++.+..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~ 138 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLD 138 (565)
T ss_pred HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhh
Confidence 35677888889999999888 67778888889999999999888 77888888999999999999888 67788888999
Q ss_pred CcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEccc
Q 040833 90 LNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISR 169 (503)
Q Consensus 90 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~ 169 (503)
|+.++..+|.+. ..|++++. +.+|..+++.+|.++ ..|...-++..|++++...|.+...++.++.+.+|..|++..
T Consensus 139 l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhccccccc-cCchHHHH-HHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 999999999887 88888886 888899999999888 555555558999999999998888888899999999999999
Q ss_pred ccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHh-hccccCcEEEeeccccccccchhccCCCCCcEEEccC
Q 040833 170 NHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVG-NLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGG 248 (503)
Q Consensus 170 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 248 (503)
|.+ .+...|.+|..|.++.++.|.+. ..|.... .++ .+..|++++|++. ..|+.+..+.+|+.||+|+
T Consensus 216 Nki--------~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~-~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 216 NKI--------RFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLN-SLLVLDLRDNKLK-EVPDEICLLRSLERLDLSN 284 (565)
T ss_pred ccc--------ccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccc-cceeeeccccccc-cCchHHHHhhhhhhhcccC
Confidence 987 44568888999999999999988 5666555 554 8999999999998 6778888899999999999
Q ss_pred CcccccCCccccCCCCCCEEEccCCccccc--------------------------------------CCccc---cCCC
Q 040833 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGE--------------------------------------IPSSI---GNLT 287 (503)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--------------------------------------~~~~~---~~~~ 287 (503)
|.++ .+|..++++ .|+.|-+.||.+..+ .+..| ...-
T Consensus 285 N~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i 362 (565)
T KOG0472|consen 285 NDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII 362 (565)
T ss_pred Cccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence 9999 677888988 999999999976210 00001 1123
Q ss_pred CCCEEEccCCcCcccCCccccC--CCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeE
Q 040833 288 LLITLNFEENMLEGSIPSSLGK--CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAI 365 (503)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L 365 (503)
+.+.|+++.-+++.++.+.|.. -.-++..+++.|++. ++|..+..+..+.+.+.+++|.+. -.+..+..+++|..|
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceee
Confidence 5677777777777444444432 234788899999987 788888888887788888888887 667778899999999
Q ss_pred eCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833 366 DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
++++|.+. .+|..+.++..||.|+++.|++. ..|..+..+..++.+-.++|++..+.+..+.++.+|..||+.+|.+.
T Consensus 441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 99999997 77888888889999999999998 78888877778888888889999777778999999999999999999
Q ss_pred ccCCCCCccCCCCceeccCCCCC
Q 040833 446 GEVPIKGVFSNSSAISIDGNDNL 468 (503)
Q Consensus 446 ~~~~~~~~~~~l~~l~~~~n~~~ 468 (503)
.++|..+...+++++++.|||+-
T Consensus 519 ~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hCChhhccccceeEEEecCCccC
Confidence 99999999999999999999876
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.9e-38 Score=278.83 Aligned_cols=447 Identities=28% Similarity=0.393 Sum_probs=372.8
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 95 (503)
.-++.+.+++|.++ ..-+.+.++..+.+|++++|.+. ..|.+++.+..++.++.++|++. .+|..++.+..|..+++
T Consensus 45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhc
Confidence 45788999999998 45556789999999999999988 67888999999999999999998 89999999999999999
Q ss_pred cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCC
Q 040833 96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175 (503)
Q Consensus 96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 175 (503)
++|.+. ++|.+++. +..++.++..+|+++ ..|..+..+.++..+++.+|.+....+..-.++.|++++...|.++
T Consensus 122 s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-- 196 (565)
T KOG0472|consen 122 SSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-- 196 (565)
T ss_pred ccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh--
Confidence 999998 89999987 899999999999998 7899999999999999999999988888666999999999998887
Q ss_pred CCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC
Q 040833 176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI 255 (503)
Q Consensus 176 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 255 (503)
..++.+..+.+|+.|++..|++. ..| .|... ..+++++++.|.+.....+...+++++..||++.|+++ ..
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIR-FLP-EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccc-cCC-CCCcc-HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 56778888899999999999998 555 44444 37999999999988444445569999999999999999 77
Q ss_pred CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCccc-----------------------C---------
Q 040833 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS-----------------------I--------- 303 (503)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-----------------------~--------- 303 (503)
|..+..+++|+.||+++|.++ ..|..++++ .|+.|-+.+|++..+ .
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 888889999999999999998 566678888 899999999876410 0
Q ss_pred -----C----ccccCCCCCCEEECcCCcCcccCCcchhcccc--ccceeEccCCCCccCCCcchhcCCCCC-eEeCCCCc
Q 040833 304 -----P----SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSS--LSIYLDLSQNQLNGPLPSNFGILKNLG-AIDISENK 371 (503)
Q Consensus 304 -----~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~--l~~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~ 371 (503)
+ .......+.+.|++++-+++ .+|...+.... .++..+++.|++. +.|..+..+..+. .+.+++|.
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence 0 01123456788888888887 67766555443 3478999999998 7777666555544 45666666
Q ss_pred ccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-
Q 040833 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI- 450 (503)
Q Consensus 372 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 450 (503)
++ .+|..++.+++|..|+|++|.+. .+|..++.+..|+.||++.|++. ..|+++..+..++.+-.++|++....+.
T Consensus 424 is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 424 IS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred cc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHH
Confidence 65 88888999999999999999988 77888999999999999999998 7889988888899999999999977776
Q ss_pred CCccCCCCceeccCCCC--------CcccCCCCCCCCCCCCCcc
Q 040833 451 KGVFSNSSAISIDGNDN--------LCGGISELHLSTCSIKESK 486 (503)
Q Consensus 451 ~~~~~~l~~l~~~~n~~--------~c~~~~~~~ls~~~~~~~~ 486 (503)
.....+|+.+++..|.. .|..+.++++++|++..++
T Consensus 501 l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred hhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCCH
Confidence 56678889999987732 2788899999999998544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5.6e-35 Score=286.09 Aligned_cols=427 Identities=27% Similarity=0.352 Sum_probs=310.4
Q ss_pred CCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833 13 GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY 92 (503)
Q Consensus 13 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (503)
.+.-+|++|++++|.+. .+|..+..+++|+.|.++.|.|. .+|.+..++.+|+++.|..|+.. ..|..+..+++|++
T Consensus 42 ~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQY 118 (1081)
T ss_pred hheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence 34445899999999887 78888888999999999999888 66778888999999999998887 88888999999999
Q ss_pred EEccCCCCcccCchhhhcCCCCCCEEEccCC-------------------cccccCCccccCCCCCCEEecccCcCcccC
Q 040833 93 ICVPVNQLQGSLPSDLGFTLPNLEVLNLCRN-------------------QFTGPIPASISNASNLMRLVIAKNGFSGKV 153 (503)
Q Consensus 93 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 153 (503)
|++++|.+. .+|.-+.. +..+..+..++| .+.+.++.....+.. .|++++|.+. .
T Consensus 119 LdlS~N~f~-~~Pl~i~~-lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~--~ 192 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEV-LTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME--V 192 (1081)
T ss_pred cccchhccC-CCchhHHh-hhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--h
Confidence 999999886 77765554 555555555555 222222222222222 3555555544 2
Q ss_pred CCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccch
Q 040833 154 PSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPS 233 (503)
Q Consensus 154 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 233 (503)
..+..+++|+.+....|.+.... ..-++++.|+.++|.+....+ ...|.++++++++++.+. .+|+
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~----------~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~-~lp~ 258 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELE----------ISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLS-NLPE 258 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEE----------ecCcchheeeeccCcceeecc---ccccccceeeecchhhhh-cchH
Confidence 23445555555555555544311 112567777777777763222 223457888888888877 4558
Q ss_pred hccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC-C
Q 040833 234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ-N 312 (503)
Q Consensus 234 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~ 312 (503)
|+..+.+|+.+++..|.+. ..|..+.....|+.+....|.+. -.|.......+|++|++..|.+....+..+.... +
T Consensus 259 wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 8888888888888888885 56666777778888888888776 3455566678888888888888744443343333 3
Q ss_pred CCEEECcCCcCcccCCcchh-ccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833 313 LISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391 (503)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~-~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 391 (503)
++.|+.+.|++. ..|..-. ..+.+ +.|++.+|.+++.....+.++.+|+.|+|++|++.......+.+++.|++|+|
T Consensus 337 l~~ln~s~n~l~-~lp~~~e~~~~~L-q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 337 LNTLNVSSNKLS-TLPSYEENNHAAL-QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred HHHHhhhhcccc-ccccccchhhHHH-HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 677777777765 4442222 22334 78999999999888888889999999999999998777778899999999999
Q ss_pred CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc-CCCCCccCCCCceeccCCCCCc
Q 040833 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE-VPIKGVFSNSSAISIDGNDNLC 469 (503)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~l~~l~~~~n~~~c 469 (503)
|||.++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|.++-. .|.....++|++|+++||+|.-
T Consensus 415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred ccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 999998 67899999999999999999998 556 678899999999999998854 3433333899999999998763
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.4e-34 Score=270.27 Aligned_cols=370 Identities=26% Similarity=0.350 Sum_probs=308.2
Q ss_pred CCCCCCEEEcccceee-eeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040833 62 QLKRMLYLLLGVNKLS-GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM 140 (503)
Q Consensus 62 ~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 140 (503)
-++-.+-+|+++|.++ ...|.....++.++.|.+....+. .+|+.+.. +.+|++|.+++|++. .+-..++.+|.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 3455667788888777 566777788888888888888886 88888886 888899988888887 5556688888899
Q ss_pred EEecccCcCcc--cCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCc
Q 040833 141 RLVIAKNGFSG--KVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLR 218 (503)
Q Consensus 141 ~L~l~~n~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 218 (503)
.+.+..|.+.. .++.+..+..|..|++++|.+. +.+..+...+++-.|++++|.|..+....|.++ +.|-
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL-tDLL 153 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL-TDLL 153 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-------hcchhhhhhcCcEEEEcccCccccCCchHHHhh-HhHh
Confidence 88888887753 3445888999999999999887 455667777889999999999985555556666 4789
Q ss_pred EEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccc-ccCCccccCCCCCCEEEccCC
Q 040833 219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFW-GEIPSSIGNLTLLITLNFEEN 297 (503)
Q Consensus 219 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n 297 (503)
.|++++|++. .+|..++.+.+|++|++++|.+..---..+..+..|+.|.+++.+.+ .-+|..+..+.+|..++++.|
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 9999999987 66667888999999999999876433345667788999999988755 346778888999999999999
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccc-ccC
Q 040833 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS-GQI 376 (503)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~ 376 (503)
.+. ..|+++..+++|+.|++++|.++ .+......+..+ ++|++|.|+++ ..|..+..+++|+.|++.+|.++ +-+
T Consensus 233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 988 78889999999999999999998 666667777788 89999999999 88899999999999999999886 357
Q ss_pred CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 377 PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 377 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
|..++.+.+|+++..++|.+. ..|+.+..|++|+.|.|++|++. .+|+.+.-++.|+.||++.|+=.-.+|
T Consensus 309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 889999999999999999886 88999999999999999999998 788999999999999999998664554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.1e-34 Score=270.55 Aligned_cols=372 Identities=25% Similarity=0.331 Sum_probs=328.2
Q ss_pred CCCCcEEEccCCCCc-ccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEE
Q 040833 87 LSSLNYICVPVNQLQ-GSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWV 165 (503)
Q Consensus 87 l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L 165 (503)
++-.+-+++++|.+. +.+|.++.+ +++++.|.+...++. .+|+.++.+.+|++|.++.|++......+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 455667899999998 578998887 999999999999887 89999999999999999999998888789999999999
Q ss_pred EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245 (503)
Q Consensus 166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 245 (503)
.+..|.+... .++..+..+..|++|++++|++. ..|..+.... +.-.|++++|+|.++....|.++..|-.||
T Consensus 84 ~~R~N~LKns-----GiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AK-n~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 84 IVRDNNLKNS-----GIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAK-NSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hhhccccccC-----CCCchhcccccceeeecchhhhh-hcchhhhhhc-CcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 9999988753 45566777889999999999998 7788887765 889999999999977667788999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCc-ccCCccccCCCCCCEEECcCCcCc
Q 040833 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLE-GSIPSSLGKCQNLISLNLSNNNLS 324 (503)
Q Consensus 246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~ 324 (503)
+|+|++. .+|.....+..|+.|.+++|.+.-.-...+..+++|++|.+++.+-+ ..+|..+..+.+|..+|++.|.+.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 9999998 67778889999999999999876443445667788999999987643 357888999999999999999998
Q ss_pred ccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc-ccCchh
Q 040833 325 GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ-GNIPSS 403 (503)
Q Consensus 325 ~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~ 403 (503)
..|+++..++++ +.|+||+|+|+ ........+.+|++|+++.|+++ .+|.+++.++.|+.|.+.+|.++ +-+|..
T Consensus 236 -~vPecly~l~~L-rrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 236 -IVPECLYKLRNL-RRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred -cchHHHhhhhhh-heeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 899999999999 89999999999 55566777889999999999998 89999999999999999999887 347889
Q ss_pred ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833 404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS 473 (503)
Q Consensus 404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~ 473 (503)
++++.+|+.+..++|.+. ..|+.+..|+.|+.|.++.|++.+.+.....++.++.|+++.||.+.-.++
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 999999999999999998 889999999999999999999998777888899999999999998865443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=9.1e-34 Score=277.64 Aligned_cols=455 Identities=24% Similarity=0.307 Sum_probs=318.2
Q ss_pred CCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCC
Q 040833 8 VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNL 87 (503)
Q Consensus 8 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 87 (503)
+|..+-....+..|+++.|.+....-+...+.-+|++|++++|.+. ..|..+..+++|+.|+++.|.|. ..|....++
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~ 90 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM 90 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhh
Confidence 4445555555777888888766333344455666888888888877 56777888888888888888887 677778888
Q ss_pred CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEc
Q 040833 88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGI 167 (503)
Q Consensus 88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l 167 (503)
.+|+++.+.+|.+. ..|.++.. +.+|++|++++|.+. ..|..+..+..++++..++|..... ++... .+.+++
T Consensus 91 ~~l~~lnL~~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~---lg~~~-ik~~~l 163 (1081)
T KOG0618|consen 91 RNLQYLNLKNNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR---LGQTS-IKKLDL 163 (1081)
T ss_pred hcchhheeccchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh---hcccc-chhhhh
Confidence 88888888888876 78888776 888888888888887 6777777666666666666611111 11111 444444
Q ss_pred ccccCCCCCCCCcccccccc-------------------CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc
Q 040833 168 SRNHLGNGKKDDLEFVNSLV-------------------NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF 228 (503)
Q Consensus 168 ~~n~l~~~~~~~~~~~~~l~-------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 228 (503)
..|.+.. .+..... .+++|+.+....|++....- .. ++++.|..++|.+.
T Consensus 164 ~~n~l~~------~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~----~g-~~l~~L~a~~n~l~ 232 (1081)
T KOG0618|consen 164 RLNVLGG------SFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEI----SG-PSLTALYADHNPLT 232 (1081)
T ss_pred hhhhccc------chhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEe----cC-cchheeeeccCcce
Confidence 4444433 2222222 23334444433333321100 01 25666666666655
Q ss_pred cccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 040833 229 GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG 308 (503)
Q Consensus 229 ~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 308 (503)
.... -....+|++++++.+.+. .+|.++..+.+|+.++...|.++ ..|..+...++|+.|.+.+|.+. -.|....
T Consensus 233 ~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le 307 (1081)
T KOG0618|consen 233 TLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLE 307 (1081)
T ss_pred eecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccc
Confidence 2211 122357888888888887 45577888888888888888886 55666677788888888888887 4455667
Q ss_pred CCCCCCEEECcCCcCcccCCcchhccccc-cceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC
Q 040833 309 KCQNLISLNLSNNNLSGTIPTEVIGLSSL-SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE 387 (503)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (503)
..++|++|++..|.+. ..|..+...... +..++.+.|++.......=...+.|+.|++.+|.+++..-..+-+.++|+
T Consensus 308 ~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 7888889999888887 555544433222 36677777777643222222356789999999999987777788899999
Q ss_pred EEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCC
Q 040833 388 QLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDN 467 (503)
Q Consensus 388 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~ 467 (503)
.|+|++|++.......+.++..|++|+||+|+++ .+|..+..++.|++|..++|.+. ..|....++.|+.+|++-|.-
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence 9999999999666667889999999999999999 66788999999999999999999 556788899999999987622
Q ss_pred C--------c-ccCCCCCCCCCCCCCcccccc
Q 040833 468 L--------C-GGISELHLSTCSIKESKQSRS 490 (503)
Q Consensus 468 ~--------c-~~~~~~~ls~~~~~~~~~~~~ 490 (503)
- . ..+++||+|+|.-..++...+
T Consensus 465 ~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 465 SEVTLPEALPSPNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred hhhhhhhhCCCcccceeeccCCcccccchhhh
Confidence 1 1 567899999997544444433
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=6.2e-28 Score=215.47 Aligned_cols=274 Identities=22% Similarity=0.227 Sum_probs=131.0
Q ss_pred CcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEccc-ceeeeeCCccccCCCCCcEEEcc
Q 040833 18 LRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGV-NKLSGEIPFSIYNLSSLNYICVP 96 (503)
Q Consensus 18 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~ 96 (503)
...|+|..|.|+.+.+.+|..+++|+.||+++|.|+.+.|++|+.++.|-.|-+.+ |+|+......|+++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 44555666666655555566666666666666666656666666665555544444 55554444456666666666665
Q ss_pred CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccC-------------CCccCCCCCc
Q 040833 97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKV-------------PSLKILHKLE 163 (503)
Q Consensus 97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-------------~~l~~l~~L~ 163 (503)
-|++. .++...++.+++|..|.+.+|.+..+-...|..+..++.+.+..|.+...- ..++...-..
T Consensus 149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 55554 555555555666666666666555333335555555555555555432100 0011111111
Q ss_pred EEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCch-hHhhccccCcEEEeeccccccccchhccCCCCCc
Q 040833 164 WVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPE-AVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLE 242 (503)
Q Consensus 164 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 242 (503)
-..+.+.++...... ++... ...+..--.+.+......|. .|..++ +|+++++++|.++.+-..+|....+++
T Consensus 228 p~rl~~~Ri~q~~a~--kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 228 PYRLYYKRINQEDAR--KFLCS---LESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred hHHHHHHHhcccchh--hhhhh---HHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhh
Confidence 111111111111000 00000 00000000111112222222 233443 555555555555555555555555555
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 040833 243 FLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM 298 (503)
Q Consensus 243 ~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 298 (503)
+|.+..|.+.......|.++..|+.|++.+|+++...|.+|.....|.+|++-.|+
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 55555555554444555555555555555555555555555555555555554444
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=7.9e-28 Score=214.80 Aligned_cols=299 Identities=19% Similarity=0.145 Sum_probs=227.1
Q ss_pred EcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccC-CCC
Q 040833 22 AMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPV-NQL 100 (503)
Q Consensus 22 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~ 100 (503)
+-++-.++ ..|..+. +....+.+..|.|+.+.+.+|+.+++||.|||++|.|+.+-|++|.++..|.+|-+.+ |+|
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 34455555 5666554 5678899999999999999999999999999999999999999999999998877776 889
Q ss_pred cccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCC-
Q 040833 101 QGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKD- 178 (503)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~- 178 (503)
+ .+|...|.++..|+.|.+..|.+..+..+.|..++++..|.+.+|.+...... +..+..++.+.+..|.+.....-
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~ 207 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP 207 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence 8 99999999999999999999999988888999999999999999999876664 88888999988887763221100
Q ss_pred -----CccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccc-hhccCCCCCcEEEccCCccc
Q 040833 179 -----DLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP-SGLRNLVNLEFLHLGGNQFT 252 (503)
Q Consensus 179 -----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~~~ 252 (503)
....+..++......-..+.+..+..+.+..|......+..--.+.+......| ..|..+++|++|++++|.++
T Consensus 208 wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~ 287 (498)
T KOG4237|consen 208 WLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT 287 (498)
T ss_pred hhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence 001111111112122222222333333333332211111111122332322333 35889999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCc
Q 040833 253 GRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS 324 (503)
Q Consensus 253 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 324 (503)
.+-+.+|.+...+++|.+.+|++.......|.++..|++|++++|+|+...|.+|....+|.+|++-.|++.
T Consensus 288 ~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 288 RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999999999999999999998777788999999999999999999889999999999999999988764
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.7e-23 Score=228.17 Aligned_cols=339 Identities=20% Similarity=0.252 Sum_probs=179.5
Q ss_pred cccCCCCCcEEEccCCCC------cccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCc
Q 040833 83 SIYNLSSLNYICVPVNQL------QGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSL 156 (503)
Q Consensus 83 ~~~~l~~L~~L~l~~n~~------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l 156 (503)
+|.++++|+.|.++.+.. ...+|..+..-.++|+.|.+.++.++ .+|..+ ...+|++|++.++.+......+
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccccccc
Confidence 455555555555543321 11234444332234555555555554 444444 3455555555555554444445
Q ss_pred cCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhcc
Q 040833 157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236 (503)
Q Consensus 157 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 236 (503)
..+++|+.++++++.... ....+..+++|++|++++|.....+|..+..++ +|+.|++++|.....+|..+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~-------~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLK-------EIPDLSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccCCCCCEEECCCCCCcC-------cCCccccCCcccEEEecCCCCccccchhhhccC-CCCEEeCCCCCCcCccCCcC-
Confidence 555555555555443211 111234455566666666544445555555554 56666666654333444333
Q ss_pred CCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcc-------cCCccccC
Q 040833 237 NLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG-------SIPSSLGK 309 (503)
Q Consensus 237 ~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-------~~~~~~~~ 309 (503)
++++|+.|++++|......|.. ..+|+.|++++|.+. ..|..+ .+++|++|.+.++.... ..+.....
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 4566666666666433233321 235666666666654 233322 35556666655533211 01111223
Q ss_pred CCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEE
Q 040833 310 CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389 (503)
Q Consensus 310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (503)
+++|++|++++|.....+|..+..++++ +.|++++|.....+|..+ .+++|++|++++|......|.. .++|+.|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L 851 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDL 851 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEe
Confidence 4567777777766555666666666666 677776664333444443 4667777777776543333332 2467777
Q ss_pred ECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCc
Q 040833 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH 443 (503)
Q Consensus 390 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 443 (503)
+|++|.++ .+|..+..+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus 852 ~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 852 NLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77777776 556667777777777777754333455556666777777777774
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=8e-24 Score=230.64 Aligned_cols=337 Identities=23% Similarity=0.258 Sum_probs=147.2
Q ss_pred cccCCCCCCCEEECCCCc------cccCCCccccCCC-CCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCch
Q 040833 34 SSFGNLSSLEALSASANQ------FVGQIPETLSQLK-RMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPS 106 (503)
Q Consensus 34 ~~~~~l~~L~~L~l~~n~------i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 106 (503)
.+|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 445556666666554332 1223344444442 3555555555554 444444 3455555555555554 4444
Q ss_pred hhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCcccccc
Q 040833 107 DLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNS 185 (503)
Q Consensus 107 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 185 (503)
.+. .+++|+.|+++++.....+|. +..+++|+.|++++|......+. +..+++|+.|++++|..-. .++..
T Consensus 629 ~~~-~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~------~Lp~~ 700 (1153)
T PLN03210 629 GVH-SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------ILPTG 700 (1153)
T ss_pred ccc-cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC------ccCCc
Confidence 443 255555555555433223332 44555555555555543333332 5555555555555543211 11111
Q ss_pred ccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccc-------ccCCcc
Q 040833 186 LVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFT-------GRIPGS 258 (503)
Q Consensus 186 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-------~~~~~~ 258 (503)
.++++|+.|++++|.....+|. .+++++.|+++++.+. .+|..+ .+++|++|++.++... ...+..
T Consensus 701 -i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 701 -INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred -CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence 1345555555555533322222 1234555555555543 223222 3444555555442211 001111
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcccccc
Q 040833 259 IVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLS 338 (503)
Q Consensus 259 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 338 (503)
+...+.|+.|++++|......|..+..+++|+.|++++|......|... .+++|++|++++|......|... ..+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL- 848 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---TNI- 848 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---ccc-
Confidence 1223345555555554443444444555555555555443222333322 34455555555543322222211 122
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 394 (503)
+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 44444444444 33444444444455554443222233333444444444444444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=3e-19 Score=181.37 Aligned_cols=259 Identities=27% Similarity=0.325 Sum_probs=116.6
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCC
Q 040833 114 NLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLE 193 (503)
Q Consensus 114 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~ 193 (503)
+-..|+++.+.++ .+|..+. ++|+.|++.+|.+...+. ..++|++|++++|.++.... ..++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----------LPPGLL 265 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccC----------cccccc
Confidence 3555666666665 4555443 356666666665554322 13455666666655543210 023455
Q ss_pred EEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273 (503)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n 273 (503)
.|++++|.+. .+|. .+..|+.|++++|.+.. +|. ..++|+.|++++|.+++. |.. ...|+.|++++|
T Consensus 266 ~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N 332 (788)
T PRK15387 266 ELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNN 332 (788)
T ss_pred eeeccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---cccccccccccC
Confidence 6666665554 2222 22345555565555542 222 124555566655555532 211 123455555555
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCC
Q 040833 274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP 353 (503)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~ 353 (503)
.+++ +|. -.++|+.|++++|.++. +|.. .++|+.|++++|.+. .+|... ..+ +.|++++|.++. +|
T Consensus 333 ~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP 398 (788)
T PRK15387 333 QLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LP 398 (788)
T ss_pred cccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CC
Confidence 5542 221 11345555555555552 2211 234445555555544 233211 122 444555554442 22
Q ss_pred cchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc
Q 040833 354 SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR 423 (503)
Q Consensus 354 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 423 (503)
.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|+|++|++++.
T Consensus 399 ~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 399 VL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred Cc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 11 134444555555444 22321 123444444444444 3344444444444445544444433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.9e-19 Score=179.85 Aligned_cols=262 Identities=27% Similarity=0.324 Sum_probs=200.2
Q ss_pred CCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhcccc
Q 040833 137 SNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR 216 (503)
Q Consensus 137 ~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 216 (503)
.+-..|+++.+.+...++.+. ++|+.|++.+|.++.... ..++|++|++++|.++. +|. .+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----------lp~~Lk~LdLs~N~Lts-LP~----lp~s 263 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----------LPPELRTLEVSGNQLTS-LPV----LPPG 263 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----------CCCCCcEEEecCCccCc-ccC----cccc
Confidence 456678999998886555454 479999999999885321 14789999999999984 443 3458
Q ss_pred CcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC
Q 040833 217 LRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE 296 (503)
Q Consensus 217 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 296 (503)
|+.|++++|.+.. ++.. ..+|+.|++++|.++. +|. ..++|+.|++++|.+.+. |.. ...|+.|++++
T Consensus 264 L~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 264 LLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYN 331 (788)
T ss_pred cceeeccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CCC---ccccccccccc
Confidence 9999999998873 3332 3578899999999884 443 346899999999998853 332 35688999999
Q ss_pred CcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccC
Q 040833 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQI 376 (503)
Q Consensus 297 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 376 (503)
|.+.. +|. ...+|++|++++|+++ .+|... ..+ +.|++++|.+.. +|.. ..+|+.|++++|.++ .+
T Consensus 332 N~L~~-LP~---lp~~Lq~LdLS~N~Ls-~LP~lp---~~L-~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~L 397 (788)
T PRK15387 332 NQLTS-LPT---LPSGLQELSVSDNQLA-SLPTLP---SEL-YKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SL 397 (788)
T ss_pred Ccccc-ccc---cccccceEecCCCccC-CCCCCC---ccc-ceehhhcccccc-Cccc---ccccceEEecCCccc-CC
Confidence 99884 332 1258999999999998 455432 233 789999999984 4543 357999999999998 45
Q ss_pred CccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 377 PSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 377 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+
T Consensus 398 P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 543 3579999999999984 5653 357889999999998 678889999999999999999997654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=5.5e-20 Score=175.00 Aligned_cols=251 Identities=22% Similarity=0.226 Sum_probs=132.5
Q ss_pred cCcEEEeeccccccc----cchhccCCCCCcEEEccCCcccc------cCCccccCCCCCCEEEccCCcccccCCccccC
Q 040833 216 RLRILIVGNNQLFGN----IPSGLRNLVNLEFLHLGGNQFTG------RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGN 285 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~~~~------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 285 (503)
.++.+.++++.+.+. ++..+...+++++++++++.+.+ ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 345555554444221 22223344445555555544331 11223444555555666555554333333322
Q ss_pred CC---CCCEEEccCCcCccc----CCccccCC-CCCCEEECcCCcCccc----CCcchhccccccceeEccCCCCccCC-
Q 040833 286 LT---LLITLNFEENMLEGS----IPSSLGKC-QNLISLNLSNNNLSGT----IPTEVIGLSSLSIYLDLSQNQLNGPL- 352 (503)
Q Consensus 286 ~~---~L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~~L~l~~n~l~~~~- 352 (503)
+. +|++|++++|.+.+. ....+..+ ++|++|++++|.+++. ....+..+..+ ++|++++|.+++..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence 22 366666666655421 11223344 5666666666665522 12233333444 66666666665321
Q ss_pred ---CcchhcCCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCcCcccCchhcc-----CCCCCCEEeCCCCcc
Q 040833 353 ---PSNFGILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNIPSSLS-----SLRGIENLDLSRNNL 420 (503)
Q Consensus 353 ---~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l 420 (503)
+..+...++|++|++++|.+++. ....+..+++|++|++++|.+++.....+. ..++|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 22233455778888887777532 233455677788888888877753222221 236788888888877
Q ss_pred ccc----cCccCcCCCCCCeeecCCCcCcccCC-----CCCcc-CCCCceeccCCCC
Q 040833 421 SGR----IPKYLENFPFLQNLNLSFNHFEGEVP-----IKGVF-SNSSAISIDGNDN 467 (503)
Q Consensus 421 ~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~-~~l~~l~~~~n~~ 467 (503)
++. ....+..+++|+++++++|.+..... ....+ +.++.+++.+|||
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 522 23345566778888888888774311 12223 5677777777764
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=6.3e-20 Score=174.59 Aligned_cols=210 Identities=24% Similarity=0.316 Sum_probs=134.8
Q ss_pred hccCCCCCcEEEccCCcccccCCccccCCCC---CCEEEccCCccccc----CCccccCC-CCCCEEEccCCcCccc---
Q 040833 234 GLRNLVNLEFLHLGGNQFTGRIPGSIVDLYK---LQRLALEGNKFWGE----IPSSIGNL-TLLITLNFEENMLEGS--- 302 (503)
Q Consensus 234 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~---L~~L~l~~n~~~~~----~~~~~~~~-~~L~~L~l~~n~~~~~--- 302 (503)
.+..+++|++|++++|.+.+..+..+..+.. |++|++++|.+.+. ....+..+ ++|++|++++|.++..
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 4455667777777776665433333333333 77777777766521 12233444 6777777777776632
Q ss_pred -CCccccCCCCCCEEECcCCcCcccC----CcchhccccccceeEccCCCCccCC----CcchhcCCCCCeEeCCCCccc
Q 040833 303 -IPSSLGKCQNLISLNLSNNNLSGTI----PTEVIGLSSLSIYLDLSQNQLNGPL----PSNFGILKNLGAIDISENKLS 373 (503)
Q Consensus 303 -~~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~l~~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~ 373 (503)
....+..+++|++|++++|.+.+.. +..+...+.+ +.|++++|.+.+.. ...+..+++|++|++++|.++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 2234555667788888777776321 2223334455 77888888776432 234556788999999999887
Q ss_pred ccCCcccc-----CCCCCCEEECCCCcCcc----cCchhccCCCCCCEEeCCCCccccc----cCccCcCC-CCCCeeec
Q 040833 374 GQIPSSIG-----SCTRLEQLVMNGNFFQG----NIPSSLSSLRGIENLDLSRNNLSGR----IPKYLENF-PFLQNLNL 439 (503)
Q Consensus 374 ~~~~~~~~-----~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~-~~L~~L~l 439 (503)
+.....+. ..+.|+.|++++|.+++ .+...+..+++|+++++++|.++.. ....+... +.|+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 53222221 24789999999999873 2334566778999999999999855 33444555 78999999
Q ss_pred CCCcC
Q 040833 440 SFNHF 444 (503)
Q Consensus 440 ~~n~l 444 (503)
.+|++
T Consensus 315 ~~~~~ 319 (319)
T cd00116 315 KDDSF 319 (319)
T ss_pred CCCCC
Confidence 98875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=4.3e-18 Score=174.12 Aligned_cols=248 Identities=26% Similarity=0.400 Sum_probs=115.3
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271 (503)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 271 (503)
...|++++++++ .+|..+ |+.++.|++++|.+.. +|..+. .+|++|++++|.++ .+|..+. ..|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 445555555544 233222 2345555555555552 232221 35555555555555 2233222 245555555
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351 (503)
Q Consensus 272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~ 351 (503)
+|.+. .+|..+. .+|+.|++++|.+.. +|..+ .++|+.|++++|.++ .+|..+. ..+ +.|++++|.++.
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL-~~L~Ls~N~Lt~- 318 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIR-TLPAHLP--SGI-THLNVQSNSLTA- 318 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccc-cCcccch--hhH-HHHHhcCCcccc-
Confidence 55555 2233221 355556665555552 33322 135556666665555 2333221 122 555556655552
Q ss_pred CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431 (503)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 431 (503)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|.++ .+|..+. ++|++|+|++|+++. +|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--
Confidence 23222 2455566666665552 343332 45666666666555 3344332 456666666665552 232221
Q ss_pred CCCCeeecCCCcCcccCCC----CCccCCCCceeccCCCCCccc
Q 040833 432 PFLQNLNLSFNHFEGEVPI----KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 432 ~~L~~L~l~~n~l~~~~~~----~~~~~~l~~l~~~~n~~~c~~ 471 (503)
++|+.|++++|.+...+.. ....+.+..+++.+||.....
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~t 431 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERT 431 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHH
Confidence 2455566666665532211 111244455555565554433
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.1e-17 Score=169.16 Aligned_cols=225 Identities=26% Similarity=0.452 Sum_probs=124.7
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEc
Q 040833 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270 (503)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l 270 (503)
.++.|++++|.+. .+|..+. ++|++|++++|.+.. +|..+. .+|+.|++++|.+. .+|..+. ..|+.|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 4666666666655 3333322 356666666666552 333222 35666666666665 3343332 35666666
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCcc
Q 040833 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG 350 (503)
Q Consensus 271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~ 350 (503)
++|.+.. .|..+. ++|+.|++++|.+.. .|..+ .++|+.|++++|.+. .+|..+. +++ +.|++++|.++.
T Consensus 270 s~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l~--~sL-~~L~Ls~N~Lt~ 339 (754)
T PRK15370 270 FHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLT-ALPETLP--PGL-KTLEAGENALTS 339 (754)
T ss_pred cCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccc-cCCcccc--ccc-eeccccCCcccc
Confidence 6666652 343332 456666666666653 23222 235666667766665 3343222 233 666777776663
Q ss_pred CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc---
Q 040833 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY--- 427 (503)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--- 427 (503)
+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ..|+.|++++|++. .+|..
T Consensus 340 -LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~ 409 (754)
T PRK15370 340 -LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPH 409 (754)
T ss_pred -CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHH
Confidence 444332 56777777777766 4454442 46777777777776 3444433 35777777777776 33332
Q ss_pred -CcCCCCCCeeecCCCcCc
Q 040833 428 -LENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 428 -~~~~~~L~~L~l~~n~l~ 445 (503)
+..++.+..+++.+|++.
T Consensus 410 ~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 410 FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhhcCCCccEEEeeCCCcc
Confidence 233466777777777765
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3e-18 Score=136.42 Aligned_cols=158 Identities=27% Similarity=0.432 Sum_probs=137.2
Q ss_pred cCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833 12 LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN 91 (503)
Q Consensus 12 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 91 (503)
+-++.+++.|.+++|+++ ..|..++.+.+|+.|++++|+|. .+|..++.++.|++|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 346788899999999999 66667899999999999999988 67888999999999999999987 8899999999999
Q ss_pred EEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccc
Q 040833 92 YICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRN 170 (503)
Q Consensus 92 ~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n 170 (503)
.|++.+|.+.+ .+|..+|. +..|+-|++++|.+. .+|..++++++|+-|.+.+|.+...+..++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 99999988763 57888886 899999999999998 8888999999999999999988877666888888888888888
Q ss_pred cCCC
Q 040833 171 HLGN 174 (503)
Q Consensus 171 ~l~~ 174 (503)
+++-
T Consensus 184 rl~v 187 (264)
T KOG0617|consen 184 RLTV 187 (264)
T ss_pred eeee
Confidence 7763
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.4e-18 Score=136.09 Aligned_cols=176 Identities=27% Similarity=0.439 Sum_probs=90.6
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEe
Q 040833 287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366 (503)
Q Consensus 287 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 366 (503)
..+..|.++.|.++ ..|..++.+.+|+.|++.+|++. .+|..++.++++ +.|+++-|.+. ..|..|+.++.|+.||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~kl-r~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKL-RILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhh-hheecchhhhh-cCccccCCCchhhhhh
Confidence 33444444555444 23333444555555555555554 445555555555 45555555444 4455555555555555
Q ss_pred CCCCcccc-cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833 367 ISENKLSG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 367 l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
+++|++.+ ..|..|-.+..|+-|++++|.+. .+|..++++.+|+.|.+++|.+. ..|..++.++.|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 55555543 34444444555555555555554 55555555566666666665555 44555555556666666666655
Q ss_pred ccCCCCCccCC---CCceeccCCCCC
Q 040833 446 GEVPIKGVFSN---SSAISIDGNDNL 468 (503)
Q Consensus 446 ~~~~~~~~~~~---l~~l~~~~n~~~ 468 (503)
-.+|..+.+.- -..+.+..|||.
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 44443332221 123445566665
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=5.3e-13 Score=118.89 Aligned_cols=239 Identities=20% Similarity=0.247 Sum_probs=138.6
Q ss_pred ccccCCCCCCEEECcCCcccccCc----hhHhhccccCcEEEeeccccc---cccc-------hhccCCCCCcEEEccCC
Q 040833 184 NSLVNASRLELLQISDNNFGGMLP----EAVGNLSTRLRILIVGNNQLF---GNIP-------SGLRNLVNLEFLHLGGN 249 (503)
Q Consensus 184 ~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~~~~~~~L~~L~ls~n 249 (503)
..+.....++.+++++|.+...-. ..+.+.+ .|+..++++-... ..+| ..+..+++|++|+||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344556778888888887764433 3344443 5666666654211 1122 22345567777777777
Q ss_pred cccccCCc----cccCCCCCCEEEccCCcccccCCc-------------cccCCCCCCEEEccCCcCcccC----Ccccc
Q 040833 250 QFTGRIPG----SIVDLYKLQRLALEGNKFWGEIPS-------------SIGNLTLLITLNFEENMLEGSI----PSSLG 308 (503)
Q Consensus 250 ~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~-------------~~~~~~~L~~L~l~~n~~~~~~----~~~~~ 308 (503)
.+....+. .+..+..|++|.+.+|.+...... ....-+.|+++...+|.+.... ...|.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 65532222 234456677777777765422111 1223345555555555554221 12234
Q ss_pred CCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccc----cCCccccCCC
Q 040833 309 KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG----QIPSSIGSCT 384 (503)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~ 384 (503)
.++.|+++.+..|.|... .. ......|..+++|+.|||.+|.++. .+...++.++
T Consensus 183 ~~~~leevr~~qN~I~~e---G~------------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPE---GV------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred hccccceEEEecccccCc---hh------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 445555555555544311 00 0122346678888888888888763 3445677788
Q ss_pred CCCEEECCCCcCcccCchhc-----cCCCCCCEEeCCCCccccc----cCccCcCCCCCCeeecCCCcC
Q 040833 385 RLEQLVMNGNFFQGNIPSSL-----SSLRGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLSFNHF 444 (503)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l 444 (503)
+|++|++++|.+.......| ...|+|+.|.+.+|.|+.. +.......|.|+.|++++|++
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88888888888775544333 3468888888888888632 223345578888888888888
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=3.5e-13 Score=120.02 Aligned_cols=184 Identities=17% Similarity=0.205 Sum_probs=115.3
Q ss_pred cCcEEEeeccccccccc----hhccCCCCCcEEEccCCccccc-------------CCccccCCCCCCEEEccCCccccc
Q 040833 216 RLRILIVGNNQLFGNIP----SGLRNLVNLEFLHLGGNQFTGR-------------IPGSIVDLYKLQRLALEGNKFWGE 278 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~n~~~~~-------------~~~~~~~~~~L~~L~l~~n~~~~~ 278 (503)
+|++++|++|-+....+ ..+..+..|++|.+.+|.+... ........++|+.+...+|++.+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 55555555554432222 2345688999999999987521 122345668999999999998643
Q ss_pred C----CccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCcc
Q 040833 279 I----PSSIGNLTLLITLNFEENMLEGSI----PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG 350 (503)
Q Consensus 279 ~----~~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~ 350 (503)
. ...|...+.|+++.++.|.|.... ..++..+++|+.||+++|.++......+
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L------------------- 233 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL------------------- 233 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-------------------
Confidence 2 235677899999999999986432 3457889999999999998873322211
Q ss_pred CCCcchhcCCCCCeEeCCCCcccccCCccc-----cCCCCCCEEECCCCcCccc----CchhccCCCCCCEEeCCCCcc
Q 040833 351 PLPSNFGILKNLGAIDISENKLSGQIPSSI-----GSCTRLEQLVMNGNFFQGN----IPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l 420 (503)
...++.++.|+.|++++|.+......+| ...++|++|.+.+|.++.. +..+....+.|+.|+|++|++
T Consensus 234 --akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 --AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred --HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1223344555666666665543222211 2346677777777766632 222334456777777777776
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=1.8e-11 Score=125.38 Aligned_cols=118 Identities=34% Similarity=0.591 Sum_probs=100.5
Q ss_pred CCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecC
Q 040833 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS 440 (503)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 440 (503)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999998899999999999999999999998999999999999999999999998899999999999999999
Q ss_pred CCcCcccCCCC--CccCCCCceeccCCCCCcccCCCCCCCCCC
Q 040833 441 FNHFEGEVPIK--GVFSNSSAISIDGNDNLCGGISELHLSTCS 481 (503)
Q Consensus 441 ~n~l~~~~~~~--~~~~~l~~l~~~~n~~~c~~~~~~~ls~~~ 481 (503)
+|.+++..|.. ..+.++..+++.+|+.+|+.. . +..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p-~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP-G--LRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC-C--CCCCc
Confidence 99999888742 223456678999999999743 2 34563
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=3.5e-12 Score=111.29 Aligned_cols=134 Identities=30% Similarity=0.317 Sum_probs=89.8
Q ss_pred CCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCE
Q 040833 309 KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQ 388 (503)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 388 (503)
.+..|+++|+++|.|+ .+.+.+.-.|.+ +.|++++|.|... +.++.+++|+.||+++|.++ ....+=..+-+.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3456778888888776 555555555666 7788888877633 23666777888888887776 33334445667777
Q ss_pred EECCCCcCcccCchhccCCCCCCEEeCCCCcccccc-CccCcCCCCCCeeecCCCcCcccCC
Q 040833 389 LVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI-PKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 389 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
|.|++|.+.+ ...+.++-+|..||+++|+|.... ...++++|-|+.+.+.+|++.+.+.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888777652 245566677788888888776432 2346777888888888888776554
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=4.8e-13 Score=126.33 Aligned_cols=171 Identities=31% Similarity=0.484 Sum_probs=112.7
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEcc
Q 040833 265 LQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS 344 (503)
Q Consensus 265 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~ 344 (503)
-...+++.|++. ..|..++.+-.|+.+.++.|.+. ..+.++..+..|+.++++.|++. .+|..++.++ + +.+.++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-eeEEEe
Confidence 345566666665 55555666666666666666666 55556666677777777777766 5666555554 2 466677
Q ss_pred CCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc
Q 040833 345 QNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI 424 (503)
Q Consensus 345 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 424 (503)
+|+++ .+|..++....|..||.+.|.+. ..|..+..+.+|+.|.++.|.+. .+|..+.. -.|..||+|.|+++ .+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ec
Confidence 77776 55666666667777777777776 55666667777777777777766 44555553 35777777777777 56
Q ss_pred CccCcCCCCCCeeecCCCcCc
Q 040833 425 PKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 425 ~~~~~~~~~L~~L~l~~n~l~ 445 (503)
|..|..+..|++|-|.+|+++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred chhhhhhhhheeeeeccCCCC
Confidence 677777777777777777776
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.3e-12 Score=118.13 Aligned_cols=213 Identities=23% Similarity=0.211 Sum_probs=150.3
Q ss_pred cCCCCCcEEEccCCcccccCC-ccccCCCCCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCc-cccCCC
Q 040833 236 RNLVNLEFLHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQ 311 (503)
Q Consensus 236 ~~~~~L~~L~ls~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~ 311 (503)
+++.+|+++.+.++.+..... .....++.++.|+++.|-+.... ......+|+|+.|+++.|.+..-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567889999999888763221 35677899999999999876432 23456799999999999987632221 223578
Q ss_pred CCCEEECcCCcCccc-CCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccC-CccccCCCCCCEE
Q 040833 312 NLISLNLSNNNLSGT-IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQI-PSSIGSCTRLEQL 389 (503)
Q Consensus 312 ~L~~L~l~~n~~~~~-~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L 389 (503)
+|+.|.++.|.++.. +......+|++ +.|++..|............+..|++|+|++|++-+.. ......++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 999999999988732 22344466777 88999988532233334455678999999999876322 1355678889999
Q ss_pred ECCCCcCccc-Cchh-----ccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeeecCCCcCcccCC
Q 040833 390 VMNGNFFQGN-IPSS-----LSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 390 ~L~~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+++.|.+.++ .|+. ....++|++|++++|++.+- ....+..+++|+.|.+..|++.....
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence 9999988754 2222 35678999999999998632 12335667888999999998876443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.4e-12 Score=117.01 Aligned_cols=209 Identities=22% Similarity=0.208 Sum_probs=93.0
Q ss_pred CCCCCCEEECCCCccccCCC-ccccCCCCCCEEEcccceeeeeCC--ccccCCCCCcEEEccCCCCcccCchhhhcCCCC
Q 040833 38 NLSSLEALSASANQFVGQIP-ETLSQLKRMLYLLLGVNKLSGEIP--FSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPN 114 (503)
Q Consensus 38 ~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 114 (503)
++.+|+...+.++.+..... +....+++++.|||++|-+....+ .....+++|+.|+++.|++..-........++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34445555555444431111 234445555555555554432111 123344555555555555432222222223455
Q ss_pred CCEEEccCCccccc-CCccccCCCCCCEEecccCcC-cccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCC
Q 040833 115 LEVLNLCRNQFTGP-IPASISNASNLMRLVIAKNGF-SGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRL 192 (503)
Q Consensus 115 L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 192 (503)
|+.|.++.|+++.. +......+|+|+.|++.+|.. .........+..|++|++++|.+... ........++.|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-----~~~~~~~~l~~L 273 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-----DQGYKVGTLPGL 273 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-----ccccccccccch
Confidence 55555555555421 111233455555555555531 11111133444555555555554321 112233444555
Q ss_pred CEEECcCCccccc-Cchh-----HhhccccCcEEEeecccccc-ccchhccCCCCCcEEEccCCccc
Q 040833 193 ELLQISDNNFGGM-LPEA-----VGNLSTRLRILIVGNNQLFG-NIPSGLRNLVNLEFLHLGGNQFT 252 (503)
Q Consensus 193 ~~L~l~~~~~~~~-~~~~-----~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~n~~~ 252 (503)
..|+++.+.+... .|.+ .... +++++|++..|.+.+ .....+..+++|+.|.+..|.+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f-~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTF-PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhccc-ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555555554432 1111 1122 367777777776632 11123445566677777777665
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=8.9e-12 Score=108.80 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=121.4
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccC-CcccccCCccccCCCCCCEEEc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG-NKFWGEIPSSIGNLTLLITLNF 294 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l 294 (503)
+|+.+.++.|.-..+. +....-|.|+++.+.+..++. .+. +.....+.....+. ....+..-......+.|+++|+
T Consensus 215 ~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 215 NLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred hhheeeeeccchhhee-ceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhccc
Confidence 6677777766533211 111223566777666655441 111 11111111111111 1111222223445677888888
Q ss_pred cCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833 295 EENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374 (503)
Q Consensus 295 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 374 (503)
+.|.|+ .+.+.+.-.|.++.|++++|.+... . .+..++++ +.||+++|.++. ..+.-..+-++++|.+++|.+.+
T Consensus 292 S~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L-~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 292 SGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQL-QLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred cccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccc-eEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhh
Confidence 888887 4445566678888888888888732 2 26667777 788888888873 32323346788899999998863
Q ss_pred cCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccc
Q 040833 375 QIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGR 423 (503)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 423 (503)
. ..+..+.+|..||+++|+|... -...++++|.|+.+.|.+|++...
T Consensus 367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 367 L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 2 4577788899999999988732 124467889999999999988743
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=4.7e-11 Score=116.93 Aligned_cols=198 Identities=40% Similarity=0.492 Sum_probs=113.2
Q ss_pred EEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCC-CCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833 219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY-KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEEN 297 (503)
Q Consensus 219 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 297 (503)
.+....+.+... ...+...+.++.|++.++.++ .++....... +|+.|++++|.+. ..+..+..++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 455555554211 122344466777777777776 3343444443 6777777777766 33345566777777777777
Q ss_pred cCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCC
Q 040833 298 MLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIP 377 (503)
Q Consensus 298 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 377 (503)
++... +......+.|+.|++++|++. .+|........+ +++.+++|.+. ..+..+..+.++..+.+.+|++. ..+
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 77633 322335667777777777776 445443233334 66666666433 23344555666666666666665 224
Q ss_pred ccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc
Q 040833 378 SSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK 426 (503)
Q Consensus 378 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 426 (503)
..+..++++++|++++|.++... . +....+++.|++++|.+....+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceeccccccccccc-c-ccccCccCEEeccCccccccchh
Confidence 45556666666666666666332 2 55666666666666666644443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.2e-11 Score=101.92 Aligned_cols=104 Identities=26% Similarity=0.294 Sum_probs=29.9
Q ss_pred ceeEccCCCCccCCCcchh-cCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFG-ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR 417 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 417 (503)
++|+|++|.|+... .+. .+.+|+.|++++|.++.. +.+..++.|++|++++|.++...+.....+++|++|++++
T Consensus 22 ~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 22 RELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 45555555554321 222 345666666666666532 2355566666666666666633222223456666666666
Q ss_pred Cccccc-cCccCcCCCCCCeeecCCCcCcc
Q 040833 418 NNLSGR-IPKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 418 n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
|+|.+. ....+..+++|+.|++.+||+..
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 666533 12344556666666666666653
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=5.2e-11 Score=99.68 Aligned_cols=123 Identities=24% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCCEEECCCCccccCCCcccc-CCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEE
Q 040833 41 SLEALSASANQFVGQIPETLS-QLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLN 119 (503)
Q Consensus 41 ~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 119 (503)
.++.|++.+|.|+.+ +.+. .+.+|+.|++++|.++. +. .+..++.|++|++++|.+. .+...+...+|+|++|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 444445544444422 1232 34444555555554442 21 3444455555555555554 33333322245555555
Q ss_pred ccCCccccc-CCccccCCCCCCEEecccCcCcccCCC----ccCCCCCcEEEcc
Q 040833 120 LCRNQFTGP-IPASISNASNLMRLVIAKNGFSGKVPS----LKILHKLEWVGIS 168 (503)
Q Consensus 120 l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~----l~~l~~L~~L~l~ 168 (503)
+++|++... .-..++.+++|+.|++.+|.+...... +..+++|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 555555421 112344555555555555555433222 4556666666543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1.5e-10 Score=113.43 Aligned_cols=200 Identities=30% Similarity=0.447 Sum_probs=118.0
Q ss_pred EEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCC-CCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 040833 194 LLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV-NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG 272 (503)
Q Consensus 194 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~ 272 (503)
.++...+.+..... .+... +.++.+.+.++.+.. ++....... +|+.|++++|.+. ..+..+..++.|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~-~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLEL-TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-hhhcc-cceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 45666555532221 22222 256777777777663 333344443 6777777777776 3334566777777777777
Q ss_pred CcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCC
Q 040833 273 NKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL 352 (503)
Q Consensus 273 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~ 352 (503)
|.+.+ .+......+.|+.|++++|.+.. .+........|+++.+++|++. ..+..+..+..+ ..+.+.+|++.. .
T Consensus 173 N~l~~-l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-~~l~l~~n~~~~-~ 247 (394)
T COG4886 173 NDLSD-LPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-SGLELSNNKLED-L 247 (394)
T ss_pred chhhh-hhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-cccccCCceeee-c
Confidence 77763 33333356777777777777763 3333334455777777777543 344555555555 556667776653 2
Q ss_pred CcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhc
Q 040833 353 PSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL 404 (503)
Q Consensus 353 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 404 (503)
+..+..++++++|++++|.++.... +....+++.|++++|.+....+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 4455666677777777777763322 6666777777777777765544443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=3.4e-12 Score=120.70 Aligned_cols=192 Identities=29% Similarity=0.385 Sum_probs=151.5
Q ss_pred EEEcccCcCCCCCCccc--CCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccC
Q 040833 20 ILAMHRNNLSGEIPSSF--GNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPV 97 (503)
Q Consensus 20 ~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~ 97 (503)
+|.|++-+++ .+|..- ..+.-....|++.|++. .+|..+..+..|+.+.+++|.+. .+|..++++..|.+++++.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3556666666 555332 33455567899999988 77888888889999999999987 7888999999999999999
Q ss_pred CCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCC
Q 040833 98 NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKK 177 (503)
Q Consensus 98 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 177 (503)
|++. .+|..+. .--|+.|.+++|+++ .+|..++..++|.+|+.+.|.+....+.++.+.+|+.|++..|++..
T Consensus 131 NqlS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--- 203 (722)
T KOG0532|consen 131 NQLS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--- 203 (722)
T ss_pred chhh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh---
Confidence 9997 8888876 347999999999998 88888998899999999999998877778888888888888888763
Q ss_pred CCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc
Q 040833 178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF 228 (503)
Q Consensus 178 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 228 (503)
++..+..+ .|..||++.|++. .+|-.|.++. .|++|.|.+|.+.
T Consensus 204 ----lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~-~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 204 ----LPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMR-HLQVLQLENNPLQ 247 (722)
T ss_pred ----CCHHHhCC-ceeeeecccCcee-ecchhhhhhh-hheeeeeccCCCC
Confidence 34444433 3777788877777 6677777774 7777777777765
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=8.3e-11 Score=123.04 Aligned_cols=131 Identities=25% Similarity=0.285 Sum_probs=81.9
Q ss_pred CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCc--cccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833 14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQ--FVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN 91 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 91 (503)
+....|...+.+|.+. ..+... .++.|++|-+.+|. +....++.|..++.|+.|||++|.-.+.+|..++++-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3355666666666665 334333 34567777766664 4434344466677777777776665556777777777777
Q ss_pred EEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc
Q 040833 92 YICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG 148 (503)
Q Consensus 92 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 148 (503)
+|+++++.+. .+|..+.. +..|.+|++..+......+.....+++|+.|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGN-LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHH-HHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777777766 67777665 6777777776665443445555557777777665544
No 37
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=5.4e-10 Score=114.53 Aligned_cols=112 Identities=36% Similarity=0.517 Sum_probs=102.1
Q ss_pred cceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCC
Q 040833 338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSR 417 (503)
Q Consensus 338 ~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 417 (503)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCccCcCC-CCCCeeecCCCcCcccCC
Q 040833 418 NNLSGRIPKYLENF-PFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 418 n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~ 449 (503)
|++++..|..+... .++..+++.+|+..|-.|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999887653 567899999998776544
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=1.4e-10 Score=121.39 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=38.6
Q ss_pred ccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCC
Q 040833 84 IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKL 162 (503)
Q Consensus 84 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L 162 (503)
|..++.|+.|++++|.-.+.+|..+.. +-+|++|+++++.+. .+|..+.++..|.+|++..+......+. ...+.+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 444455555555544333344444443 445555555554444 4444455555555555444433333333 2334445
Q ss_pred cEEEccc
Q 040833 163 EWVGISR 169 (503)
Q Consensus 163 ~~L~l~~ 169 (503)
++|.+..
T Consensus 645 r~L~l~~ 651 (889)
T KOG4658|consen 645 RVLRLPR 651 (889)
T ss_pred cEEEeec
Confidence 5544433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.3e-10 Score=78.74 Aligned_cols=61 Identities=39% Similarity=0.536 Sum_probs=37.9
Q ss_pred CCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcC
Q 040833 384 TRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHF 444 (503)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 444 (503)
++|++|++++|.++...++.|.++++|++|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3556666666666655555666666666666666666655666666666666666666653
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=4.7e-10 Score=77.16 Aligned_cols=61 Identities=38% Similarity=0.528 Sum_probs=51.0
Q ss_pred CCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 420 (503)
++|++|++++|.++...+..|.++++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877777888888888888888888877778888888888888888875
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.76 E-value=2.6e-10 Score=111.17 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=119.6
Q ss_pred CccccCCCCCCEEEccCCcCcccCCccccCC-CCCCEEECcCCcCc---ccCCc---ch---hccccccceeEccCCCCc
Q 040833 280 PSSIGNLTLLITLNFEENMLEGSIPSSLGKC-QNLISLNLSNNNLS---GTIPT---EV---IGLSSLSIYLDLSQNQLN 349 (503)
Q Consensus 280 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~---~~~~~---~~---~~~~~l~~~L~l~~n~l~ 349 (503)
|..+..+.+|+.|.+.+|.+... ..+..+ ..|++|...+. +. ..+.. .+ ..+..+ ...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L-~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKL-ATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhH-hhhhcchhhHH
Confidence 45566778899999999887631 111111 13333333221 11 00000 00 112233 56777888877
Q ss_pred cCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCc
Q 040833 350 GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLE 429 (503)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 429 (503)
.....+.-++.++.|+|+.|+++.. ..+..|+.|++|||++|.+....--...+|. |+.|++++|-++.. ..+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHH
Confidence 5556677788899999999988743 2677788999999999988843222233454 89999999988733 4577
Q ss_pred CCCCCCeeecCCCcCcccC--CCCCccCCCCceeccCCCCCccc
Q 040833 430 NFPFLQNLNLSFNHFEGEV--PIKGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 430 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~l~~l~~~~n~~~c~~ 471 (503)
++.+|+.||+++|-+.+-. ...+.+..|+.|++.|||..|..
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8889999999999887643 23566788889999999988854
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.4e-09 Score=106.55 Aligned_cols=244 Identities=24% Similarity=0.258 Sum_probs=135.6
Q ss_pred CCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEE
Q 040833 189 ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRL 268 (503)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L 268 (503)
+..++.+.+..+.+.. ....+..+ .+++.+++.+|.+..+. ..+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~-~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKL-KSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccc-cceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 3445555566665553 11122333 36777777777766332 2255667777777777777643 234455567777
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833 269 ALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 347 (503)
Q Consensus 269 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~ 347 (503)
++++|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+.....+ ..+++..|.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l-~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKL-VLLSLLDNK 219 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHH-HHhhccccc
Confidence 7777776633 334456777777777777664433 1 35566777777777766522 112222222 334566666
Q ss_pred CccCCCcchhcCCC--CCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc--
Q 040833 348 LNGPLPSNFGILKN--LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR-- 423 (503)
Q Consensus 348 l~~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 423 (503)
+....+ +..+.. |+.+++++|++. ..+..+..+..+..|++.+|.+... ..+...+.+..+..+.+.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 653211 112222 667777777776 3334555666777777777766532 2334455666666666665422
Q ss_pred -cCcc-CcCCCCCCeeecCCCcCcccC
Q 040833 424 -IPKY-LENFPFLQNLNLSFNHFEGEV 448 (503)
Q Consensus 424 -~~~~-~~~~~~L~~L~l~~n~l~~~~ 448 (503)
.... ....+.++.+.+..|+.....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred hhccccccccccccccccccCcccccc
Confidence 1111 344566777777777766544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=2.7e-09 Score=104.65 Aligned_cols=243 Identities=25% Similarity=0.292 Sum_probs=125.2
Q ss_pred CCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCC
Q 040833 159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNL 238 (503)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 238 (503)
+..++.+.+..|.+.. ....+..+.+|+.+++.+|.+..... .+..++ +|++|++++|.|.... .+..+
T Consensus 71 l~~l~~l~l~~n~i~~-------~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~-~L~~L~ls~N~I~~i~--~l~~l 139 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-------ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLV-NLQVLDLSFNKITKLE--GLSTL 139 (414)
T ss_pred hHhHHhhccchhhhhh-------hhcccccccceeeeeccccchhhccc-chhhhh-cchheecccccccccc--chhhc
Confidence 4445555555555542 22334455666677777666653322 133343 6677777777665432 24445
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 040833 239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP-SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLN 317 (503)
Q Consensus 239 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 317 (503)
+.|+.|++++|.+... ..+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+... ..+..+..+..++
T Consensus 140 ~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 140 TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLS 214 (414)
T ss_pred cchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhh
Confidence 5566777777766632 234446666677777776664433 1 34566666666666666522 1233334444446
Q ss_pred CcCCcCcccCCcchhccc--cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833 318 LSNNNLSGTIPTEVIGLS--SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395 (503)
Q Consensus 318 l~~n~~~~~~~~~~~~~~--~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 395 (503)
+..|.+...-+. .... .+ +.+++++|.+... +..+..+..+..|++.++++... ..+...+.+..+....+.
T Consensus 215 l~~n~i~~~~~l--~~~~~~~L-~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 215 LLDNKISKLEGL--NELVMLHL-RELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNK 288 (414)
T ss_pred cccccceeccCc--ccchhHHH-HHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcch
Confidence 666655522111 1111 13 5666666666522 23344556666666666666422 123334455555555555
Q ss_pred Cccc---Cchh-ccCCCCCCEEeCCCCccccc
Q 040833 396 FQGN---IPSS-LSSLRGIENLDLSRNNLSGR 423 (503)
Q Consensus 396 l~~~---~~~~-~~~l~~L~~L~L~~n~l~~~ 423 (503)
+... .... ....+.++.+.+..|.+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 289 LALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hcchhhhhccccccccccccccccccCccccc
Confidence 4421 1111 33445666666666666543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.1e-10 Score=97.91 Aligned_cols=179 Identities=19% Similarity=0.158 Sum_probs=121.9
Q ss_pred CCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEccccc-CCCCCCCCccccccccCCC
Q 040833 114 NLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNH-LGNGKKDDLEFVNSLVNAS 190 (503)
Q Consensus 114 ~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~ 190 (503)
+|+++|++...++. ..-..+..|.+|+.|.+.++++.+.+.. +..-.+|+.++++.+. ++. ...---+.+|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-----n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-----NALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-----hHHHHHHHhhh
Confidence 58888888777652 2233456778888888888877665544 6777788888887753 221 12233467788
Q ss_pred CCCEEECcCCcccccC-chhHhhccccCcEEEeeccccc---cccchhccCCCCCcEEEccCCc-ccccCCccccCCCCC
Q 040833 191 RLELLQISDNNFGGML-PEAVGNLSTRLRILIVGNNQLF---GNIPSGLRNLVNLEFLHLGGNQ-FTGRIPGSIVDLYKL 265 (503)
Q Consensus 191 ~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~~~~L 265 (503)
.|..|++++|...... ......+..+++.|+++++.-. ..+..-...+++|.+||++++. ++......|..++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 8889999988765432 2234455568999999988532 1122234678999999999885 443344567788999
Q ss_pred CEEEccCCcccccCCcc---ccCCCCCCEEEccCCcC
Q 040833 266 QRLALEGNKFWGEIPSS---IGNLTLLITLNFEENML 299 (503)
Q Consensus 266 ~~L~l~~n~~~~~~~~~---~~~~~~L~~L~l~~n~~ 299 (503)
++|.++.|.. +.|.. +...|.|.+|++.++--
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 9999999974 44543 56788999999888743
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=4.2e-09 Score=91.02 Aligned_cols=195 Identities=19% Similarity=0.201 Sum_probs=120.4
Q ss_pred hhccCCCCCcEEEccCCcccccCCc----cccCCCCCCEEEccCCcccccCCcc-------------ccCCCCCCEEEcc
Q 040833 233 SGLRNLVNLEFLHLGGNQFTGRIPG----SIVDLYKLQRLALEGNKFWGEIPSS-------------IGNLTLLITLNFE 295 (503)
Q Consensus 233 ~~~~~~~~L~~L~ls~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~l~ 295 (503)
..+..||+|+.+++|.|.+....|. .++....|.+|.+++|.+..+.... ...-|.|+++.+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3456788888888888877644433 3456678888888888765332211 1335678888887
Q ss_pred CCcCcccC----CccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCc
Q 040833 296 ENMLEGSI----PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371 (503)
Q Consensus 296 ~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 371 (503)
+|++..-. ...+.....|+++.+..|.|. |..+..+ ....+..+.+|+.||+.+|.
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L-----------------~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTML-----------------AFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH-----------------HHHHHHHhCcceeeeccccc
Confidence 77765221 112334467777777777665 2211111 11123456788888888887
Q ss_pred ccc----cCCccccCCCCCCEEECCCCcCcccCchh----cc--CCCCCCEEeCCCCccccccCcc-----C--cCCCCC
Q 040833 372 LSG----QIPSSIGSCTRLEQLVMNGNFFQGNIPSS----LS--SLRGIENLDLSRNNLSGRIPKY-----L--ENFPFL 434 (503)
Q Consensus 372 l~~----~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----~~--~l~~L~~L~L~~n~l~~~~~~~-----~--~~~~~L 434 (503)
++. ....+++.++.|+.|.+.+|-+....... |. ..|+|..|-..+|.+.+-.... + ..+|-|
T Consensus 226 ft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L 305 (388)
T COG5238 226 FTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLL 305 (388)
T ss_pred hhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHH
Confidence 763 23445667777888888888776443332 21 3478888888888764322111 1 356778
Q ss_pred CeeecCCCcCccc
Q 040833 435 QNLNLSFNHFEGE 447 (503)
Q Consensus 435 ~~L~l~~n~l~~~ 447 (503)
..+.+.+|++...
T Consensus 306 ~~le~ngNr~~E~ 318 (388)
T COG5238 306 VDLERNGNRIKEL 318 (388)
T ss_pred HHHHHccCcchhH
Confidence 8888888888743
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=1.4e-09 Score=106.15 Aligned_cols=197 Identities=25% Similarity=0.223 Sum_probs=133.0
Q ss_pred CCCcEEEccCCcccccC-CccccCCCCCCEEEccCCcccccCCccccCC-CCCCEEEccCCcCc---c-------cCCcc
Q 040833 239 VNLEFLHLGGNQFTGRI-PGSIVDLYKLQRLALEGNKFWGEIPSSIGNL-TLLITLNFEENMLE---G-------SIPSS 306 (503)
Q Consensus 239 ~~L~~L~ls~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~---~-------~~~~~ 306 (503)
++++.|.+-...-.+.. |-.+..+..|+.|.+.++.+... ..+..+ ..|++|...+ .+. . .+..+
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccc
Confidence 44444544433322222 55667788999999999988631 222211 2455553332 111 0 11111
Q ss_pred ccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCC
Q 040833 307 LGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386 (503)
Q Consensus 307 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (503)
+ .+..|...+++.|.+. .....+.-++.+ +.|+|++|++++.. .+.+++.|++|||++|.+....-....+|. |
T Consensus 161 ~-~Wn~L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 161 P-VWNKLATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred h-hhhhHhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence 1 1346788889999887 555666666666 89999999998553 788999999999999999843333444555 9
Q ss_pred CEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeeecCCCcCcc
Q 040833 387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 387 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
+.|.+++|.+++. ..+.++++|+.||+++|-+.+. ....+..+..|+.|+|.||++=+
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 9999999999843 4578899999999999988633 22335567789999999999754
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.7e-10 Score=96.17 Aligned_cols=177 Identities=19% Similarity=0.165 Sum_probs=103.5
Q ss_pred CCCCEEecccCcCcccCCC--ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc-ccccCchhHhhc
Q 040833 137 SNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNL 213 (503)
Q Consensus 137 ~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 213 (503)
+.++++|++...++...-. +..+.+|+.|.+.++.+.+ .+...+....+|+.|+++.+. ++......+..-
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD------~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s 258 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD------PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS 258 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc------HHHHHHhccccceeeccccccccchhHHHHHHHh
Confidence 3577777777666433222 6667777888887777766 555666666778888887763 332222223333
Q ss_pred cccCcEEEeeccccccccch-hc-cCCCCCcEEEccCCccc---ccCCccccCCCCCCEEEccCCccccc-CCccccCCC
Q 040833 214 STRLRILIVGNNQLFGNIPS-GL-RNLVNLEFLHLGGNQFT---GRIPGSIVDLYKLQRLALEGNKFWGE-IPSSIGNLT 287 (503)
Q Consensus 214 ~~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~ls~n~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~ 287 (503)
.+.|..|+++-|......-. .+ .--++|+.|+++|+.-. .-+......+++|.+||+++|..... ....|-.++
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 34677777777765432211 11 11256777777776421 01122235677788888877753311 122355677
Q ss_pred CCCEEEccCCcCcccCCc---cccCCCCCCEEECcCC
Q 040833 288 LLITLNFEENMLEGSIPS---SLGKCQNLISLNLSNN 321 (503)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n 321 (503)
.|++|.+++|..- .|. .+...|+|.+|++.++
T Consensus 339 ~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 339 YLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 7888888777632 222 3456677888877766
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=4.4e-08 Score=85.99 Aligned_cols=85 Identities=24% Similarity=0.280 Sum_probs=41.5
Q ss_pred CCCCCCEEEcccceeee--eCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccC-CccccCCCC
Q 040833 62 QLKRMLYLLLGVNKLSG--EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPI-PASISNASN 138 (503)
Q Consensus 62 ~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~ 138 (503)
..++++.+||.+|.|+. .+...+.++|.|+.|+++.|++...+. ....+..+|+.|.+.+..+.... ...+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34566666666666652 222234556666666666666542221 11113456666666555443221 122334455
Q ss_pred CCEEecccC
Q 040833 139 LMRLVIAKN 147 (503)
Q Consensus 139 L~~L~l~~n 147 (503)
+++|.++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=5.4e-08 Score=84.35 Aligned_cols=190 Identities=22% Similarity=0.262 Sum_probs=108.2
Q ss_pred CCCCCEEecccCcCcccCCC-----ccCCCCCcEEEcccccCCCCCCC----CccccccccCCCCCCEEECcCCcccccC
Q 040833 136 ASNLMRLVIAKNGFSGKVPS-----LKILHKLEWVGISRNHLGNGKKD----DLEFVNSLVNASRLELLQISDNNFGGML 206 (503)
Q Consensus 136 ~~~L~~L~l~~n~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 206 (503)
+..++++++++|.+.+.... +.+.++|+..++++-........ -.-...++..||+|+.+++|.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 44455555555554332211 44456666666665432211100 0123456777888888888888877666
Q ss_pred chhHhhc---cccCcEEEeeccccccccch-------------hccCCCCCcEEEccCCccccc----CCccccCCCCCC
Q 040833 207 PEAVGNL---STRLRILIVGNNQLFGNIPS-------------GLRNLVNLEFLHLGGNQFTGR----IPGSIVDLYKLQ 266 (503)
Q Consensus 207 ~~~~~~~---~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~ls~n~~~~~----~~~~~~~~~~L~ 266 (503)
|+.+..+ .+.+++|.+++|++....-. ...+-|.|+.+....|++..- ....+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 6554432 35788888888876522111 123457788888888876521 111222335777
Q ss_pred EEEccCCcccccCC-----ccccCCCCCCEEEccCCcCcccC----CccccCCCCCCEEECcCCcCcc
Q 040833 267 RLALEGNKFWGEIP-----SSIGNLTLLITLNFEENMLEGSI----PSSLGKCQNLISLNLSNNNLSG 325 (503)
Q Consensus 267 ~L~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~ 325 (503)
.+.+..|.+..... ..+..+.+|+.|++.+|.++... ..++..++.|++|.+.+|-++.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 88887777643211 12345677888888887765332 2345556667777777776653
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=1e-06 Score=73.23 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=73.7
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC-chhccCCCCCCEEeCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI-PSSLSSLRGIENLDLSR 417 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 417 (503)
..+|+++|.+... ..|..+++|.+|.+++|+|+.+.|..-.-+++|+.|.|.+|.+.... ...+..||+|++|.+-+
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 6778888877633 45677888888888888888766665566778888888888777431 23456778888888888
Q ss_pred Cccccc---cCccCcCCCCCCeeecCCCc
Q 040833 418 NNLSGR---IPKYLENFPFLQNLNLSFNH 443 (503)
Q Consensus 418 n~l~~~---~~~~~~~~~~L~~L~l~~n~ 443 (503)
|++.+. -.-.+..+|+|+.||..+=.
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhhh
Confidence 888643 11235677888888887654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=3.8e-07 Score=80.28 Aligned_cols=185 Identities=19% Similarity=0.160 Sum_probs=81.1
Q ss_pred CCCCCEEEccCCcccc--cCCccccCCCCCCEEecccCcCcccCCCc-cCCCCCcEEEcccccCCCCCCCCccccccccC
Q 040833 112 LPNLEVLNLCRNQFTG--PIPASISNASNLMRLVIAKNGFSGKVPSL-KILHKLEWVGISRNHLGNGKKDDLEFVNSLVN 188 (503)
Q Consensus 112 l~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 188 (503)
.+.++.+++.+|.++. .+...+.++|.|+.|+++.|.+...+..+ ....+|+.+.+.+..+.... .-..+..
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~-----~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQ-----STSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhh-----hhhhhhc
Confidence 3444444444444431 12222334444444444444444333332 23444444444444333211 1112233
Q ss_pred CCCCCEEECcCCcccc--cCchhHhhccccCcEEEeecccccc--ccchhccCCCCCcEEEccCCccccc-CCccccCCC
Q 040833 189 ASRLELLQISDNNFGG--MLPEAVGNLSTRLRILIVGNNQLFG--NIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLY 263 (503)
Q Consensus 189 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~ 263 (503)
+|.++.|.++.|.... ..........+.+++++...|.... .....-+-+|++..+-+..|.+... ..+.+..++
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 4444555555442211 1111222233356666666664431 0011112346666666666655431 223344455
Q ss_pred CCCEEEccCCccccc-CCccccCCCCCCEEEccCCcCcc
Q 040833 264 KLQRLALEGNKFWGE-IPSSIGNLTLLITLNFEENMLEG 301 (503)
Q Consensus 264 ~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 301 (503)
.+-.|+++.+++.+- ..+.+..++.|..|.++++++.+
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 555666666665422 11345566677777777666653
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.22 E-value=2.2e-06 Score=71.33 Aligned_cols=122 Identities=21% Similarity=0.190 Sum_probs=89.6
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN 418 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 418 (503)
+.+++.+.++.... ..=........+||++|.+... ..|..++.|++|.+++|+|+.+.|..-..+++|..|.+.+|
T Consensus 22 ~e~~LR~lkip~ie-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIE-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchh-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45666666665221 1111234667899999998632 45778999999999999999887777777899999999999
Q ss_pred ccccc-cCccCcCCCCCCeeecCCCcCcccCC----CCCccCCCCceecc
Q 040833 419 NLSGR-IPKYLENFPFLQNLNLSFNHFEGEVP----IKGVFSNSSAISID 463 (503)
Q Consensus 419 ~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~l~~l~~~ 463 (503)
.|... ...-+..+|.|++|.+-+|++....- ....+++++.++..
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 98643 22347789999999999999875433 34556777777754
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.15 E-value=6.5e-06 Score=66.51 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCC
Q 040833 8 VPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNL 87 (503)
Q Consensus 8 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 87 (503)
-..+|.++++|+.+.+.. .++......|.++++++.+.+..+ +..+...+|..++.|+.+.+.. .+.......|..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 356788888999998875 566677778888888999988775 6666667788888888888866 4443556678888
Q ss_pred CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC
Q 040833 88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM 140 (503)
Q Consensus 88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 140 (503)
++++.+.+..+ +. .++...+... +|+.+.+.. .++......|.++++|+
T Consensus 81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 88888888765 44 6666666656 888888765 34435555666666653
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.10 E-value=6.2e-08 Score=89.06 Aligned_cols=297 Identities=16% Similarity=0.092 Sum_probs=158.5
Q ss_pred CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc-ccccCchhHhhccccCcEEEeeccc-cccccch-hccC
Q 040833 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-FGGMLPEAVGNLSTRLRILIVGNNQ-LFGNIPS-GLRN 237 (503)
Q Consensus 161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~ 237 (503)
.|++|.+.++.-... ...-.....|+++++|.+.+|. +++.....+++...+++++++..|. +++.... ....
T Consensus 139 ~lk~LSlrG~r~v~~----sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD----SSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCc----chhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 456666655542221 1222334557777777777764 3434444556666678888887754 3332222 3356
Q ss_pred CCCCcEEEccCCc-ccccCC-ccccCCCCCCEEEccCCccccc--CCccccCCCCCCEEEccCCcC-cccC-CccccCCC
Q 040833 238 LVNLEFLHLGGNQ-FTGRIP-GSIVDLYKLQRLALEGNKFWGE--IPSSIGNLTLLITLNFEENML-EGSI-PSSLGKCQ 311 (503)
Q Consensus 238 ~~~L~~L~ls~n~-~~~~~~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~-~~~~-~~~~~~~~ 311 (503)
+++|++++++.+. +++... ..+.++..++.+...||.-.+. +...-..++.+.++++..|.. ++.. ...-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 7888888888773 443211 1234555566666666542211 001113445556666555542 2211 11223456
Q ss_pred CCCEEECcCCcC-cccCCcchhc-cccccceeEccCCC-CccCCCcchh-cCCCCCeEeCCCCcccc--cCCccccCCCC
Q 040833 312 NLISLNLSNNNL-SGTIPTEVIG-LSSLSIYLDLSQNQ-LNGPLPSNFG-ILKNLGAIDISENKLSG--QIPSSIGSCTR 385 (503)
Q Consensus 312 ~L~~L~l~~n~~-~~~~~~~~~~-~~~l~~~L~l~~n~-l~~~~~~~~~-~~~~L~~L~l~~n~l~~--~~~~~~~~~~~ 385 (503)
.|+.++.+++.- +...-..+.. ..++ +.+.++.|+ +++.....++ +++.|+.+++..+.... .+...-.+++.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L-~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNL-QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCce-EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 777777777633 2111122222 2333 677777765 3333222232 46778888888775431 23333456788
Q ss_pred CCEEECCCCcCc-ccC----chhccCCCCCCEEeCCCCccc-cccCccCcCCCCCCeeecCCCcCcccC---CCCCccCC
Q 040833 386 LEQLVMNGNFFQ-GNI----PSSLSSLRGIENLDLSRNNLS-GRIPKYLENFPFLQNLNLSFNHFEGEV---PIKGVFSN 456 (503)
Q Consensus 386 L~~L~L~~n~l~-~~~----~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~ 456 (503)
|++|.+++|... +.. ...-..+..|+.+.+++++.. +...+.+..+++|+.+++-+|.--... +....+++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 888888888543 221 122235677888888888763 334556677788888888888543222 23333455
Q ss_pred CCceec
Q 040833 457 SSAISI 462 (503)
Q Consensus 457 l~~l~~ 462 (503)
++...+
T Consensus 454 i~v~a~ 459 (483)
T KOG4341|consen 454 IKVHAY 459 (483)
T ss_pred ceehhh
Confidence 554443
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=1.3e-07 Score=73.36 Aligned_cols=60 Identities=28% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCc
Q 040833 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLS 324 (503)
Q Consensus 264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 324 (503)
.|+..++++|.+.+..+..-..++.++++++.+|.+.+ .|..+..++.|+.++++.|++.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc
Confidence 33344444444442222222233344444444444442 2222444444444444444443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=2e-07 Score=72.34 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421 (503)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 421 (503)
.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 3444444444444 33333444444444444444444 33333333444444444444443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.7e-06 Score=52.20 Aligned_cols=36 Identities=39% Similarity=0.633 Sum_probs=17.1
Q ss_pred CCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833 385 RLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421 (503)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 421 (503)
+|++|++++|+++ .++..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 23333455555555555555554
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.04 E-value=1e-07 Score=87.62 Aligned_cols=84 Identities=19% Similarity=0.037 Sum_probs=41.0
Q ss_pred CCCEEECCCCccccCCC-cc-ccCCCCCCEEEcccceee-eeCCc-cccCCCCCcEEEccCC-CCcccCchhhhcCCCCC
Q 040833 41 SLEALSASANQFVGQIP-ET-LSQLKRMLYLLLGVNKLS-GEIPF-SIYNLSSLNYICVPVN-QLQGSLPSDLGFTLPNL 115 (503)
Q Consensus 41 ~L~~L~l~~n~i~~~~~-~~-~~~l~~L~~L~L~~n~i~-~~~~~-~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~~L 115 (503)
.|+.|.+.++.-.+.-+ .. -..++++++|.+.++... ...-. .-..+++|+++++..+ .+++..-+.+..++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666554322211 11 245566666666665411 11101 1224566666666663 34433344455556666
Q ss_pred CEEEccCCc
Q 040833 116 EVLNLCRNQ 124 (503)
Q Consensus 116 ~~L~l~~n~ 124 (503)
++++++++.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=2.6e-06 Score=87.53 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=78.7
Q ss_pred CCCCEEEcccceeeee-CCccc-cCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 040833 64 KRMLYLLLGVNKLSGE-IPFSI-YNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMR 141 (503)
Q Consensus 64 ~~L~~L~L~~n~i~~~-~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 141 (503)
.+|++|++++...-.. -+..+ .-+|.|++|.+.+-.+...--..+...+|+|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5677777766442211 11112 23567777776665543222234444567777777777766622 45666666666
Q ss_pred EecccCcCccc--CCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcE
Q 040833 142 LVIAKNGFSGK--VPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRI 219 (503)
Q Consensus 142 L~l~~n~~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 219 (503)
|.+.+=.+... ...+..+++|+.||+|.........-...+.+.-..+|+|+.||.+++.+.....+.+..-.++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 66665544421 1125666677777766654433221111223333345666666666665554433333332234444
Q ss_pred EE
Q 040833 220 LI 221 (503)
Q Consensus 220 L~ 221 (503)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 33
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=7.8e-05 Score=70.75 Aligned_cols=188 Identities=16% Similarity=0.199 Sum_probs=110.6
Q ss_pred ccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCC-CCccCCCcchhcCCC
Q 040833 283 IGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN-QLNGPLPSNFGILKN 361 (503)
Q Consensus 283 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n-~l~~~~~~~~~~~~~ 361 (503)
+..+.+++.|++++|.++. .|. -.++|++|.+++|.-....|..+. +.+ +.|++++| .+. .+| +.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nL-e~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGL-EKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhh-hheEccCccccc-ccc------cc
Confidence 3446889999999998873 342 245799999998755446665432 244 89999988 554 333 46
Q ss_pred CCeEeCCCCcccc--cCCccccCCCCCCEEECCCCc-Ccc-cCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCee
Q 040833 362 LGAIDISENKLSG--QIPSSIGSCTRLEQLVMNGNF-FQG-NIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNL 437 (503)
Q Consensus 362 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 437 (503)
|+.|+++++.... .+| ++|+.|.+.+++ ... ..+.. -.++|++|++++|... ..|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEE
Confidence 8888887665431 222 357777775433 111 11111 1268999999998866 3444333 589999
Q ss_pred ecCCCcCccc-CCCCCccCCCCceeccCCCCCc-ccCCCCCCCCCCCCCcccccccceEEE
Q 040833 438 NLSFNHFEGE-VPIKGVFSNSSAISIDGNDNLC-GGISELHLSTCSIKESKQSRSRSLKLI 496 (503)
Q Consensus 438 ~l~~n~l~~~-~~~~~~~~~l~~l~~~~n~~~c-~~~~~~~ls~~~~~~~~~~~~~~~~~~ 496 (503)
+++.+..... .+.....+++ .+.+.++..+- ..++..+++++-..+...-.|+-.-+|
T Consensus 183 ~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~~~~gd~~ 242 (426)
T PRK15386 183 TLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALHFRLGDIV 242 (426)
T ss_pred EecccccccccCccccccccc-EechhhhcccCHHHhhcccccccCcccchhcccccCCEE
Confidence 9987743221 1111122344 55555442222 345667777777766644444443333
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=7.3e-06 Score=51.33 Aligned_cols=40 Identities=40% Similarity=0.571 Sum_probs=32.5
Q ss_pred CCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833 408 RGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448 (503)
Q Consensus 408 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 448 (503)
++|++|++++|+|++. +..+.++++|+.|++++|+++...
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCc
Confidence 5799999999999954 556899999999999999998543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.90 E-value=4.8e-05 Score=61.40 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=12.5
Q ss_pred cccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833 282 SIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN 320 (503)
Q Consensus 282 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 320 (503)
.|..+++|+.+.+.+ .+......+|..+++|+++.+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 344444444444442 23333334444444444444433
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=6.9e-05 Score=71.10 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=14.4
Q ss_pred CCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833 360 KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394 (503)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 394 (503)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 34555555555443 2233222 34555555443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=2e-05 Score=81.13 Aligned_cols=137 Identities=21% Similarity=0.250 Sum_probs=93.3
Q ss_pred CCCCEEECcCCc-ccccCchhHhhccccCcEEEeecccccc-ccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833 190 SRLELLQISDNN-FGGMLPEAVGNLSTRLRILIVGNNQLFG-NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR 267 (503)
Q Consensus 190 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~ 267 (503)
.+|++|++++.. +...++..++...|.|+.|.+.+-.+.. .......++|+|..||||+++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567788887754 3334555666666689999988877643 2334457888999999999888844 56788888888
Q ss_pred EEccCCccccc-CCccccCCCCCCEEEccCCcCcccC------CccccCCCCCCEEECcCCcCcccCC
Q 040833 268 LALEGNKFWGE-IPSSIGNLTLLITLNFEENMLEGSI------PSSLGKCQNLISLNLSNNNLSGTIP 328 (503)
Q Consensus 268 L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~------~~~~~~~~~L~~L~l~~n~~~~~~~ 328 (503)
|.+.+-.+..- .-..+..+++|+.||+|+....... -+.-..+|.|+.||.+++.+.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 88887776531 1123556889999999877643221 1223347889999999888775443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.43 E-value=7.1e-05 Score=65.33 Aligned_cols=105 Identities=21% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCCCCEEECCCCccccCCCccccCCCCCCEEEcccc--eeeeeCCccccCCCCCcEEEccCCCCcc-cCchhhhcCCCC
Q 040833 38 NLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVN--KLSGEIPFSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPN 114 (503)
Q Consensus 38 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~ 114 (503)
.+..|+.|++.+..++.. ..|-.+++|++|.++.| ++...++.-...+++|+++++++|+++. +-...+. .+++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~-~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK-ELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh-hhcc
Confidence 334455555544444422 22455555555555555 4443333334444555555555555541 0001111 2445
Q ss_pred CCEEEccCCcccccC---CccccCCCCCCEEecc
Q 040833 115 LEVLNLCRNQFTGPI---PASISNASNLMRLVIA 145 (503)
Q Consensus 115 L~~L~l~~n~~~~~~---~~~~~~~~~L~~L~l~ 145 (503)
|..|++..|..+... -..|..+++|+.|+-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 556666555544210 0124445666655433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=1.7e-05 Score=69.43 Aligned_cols=82 Identities=26% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC--ccccCCCCCcE
Q 040833 15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP--FSIYNLSSLNY 92 (503)
Q Consensus 15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L~~ 92 (503)
+.+++.|+++|+.+.++ .-...++.|++|.|+-|+|+...| |..+++|+.|.|..|.|.. +. .-+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 44566666666666532 223456666666666666664433 5666666666666666652 21 12455666666
Q ss_pred EEccCCCCc
Q 040833 93 ICVPVNQLQ 101 (503)
Q Consensus 93 L~l~~n~~~ 101 (503)
|.+..|.--
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 666655443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00056 Score=59.86 Aligned_cols=101 Identities=23% Similarity=0.278 Sum_probs=50.1
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCC--cccccCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISEN--KLSGQIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDL 415 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 415 (503)
+.+.+.+..++.. ..|..+++|+.|.++.| ++....+.....+++|++|++++|++... ....+..+.+|..|++
T Consensus 46 e~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl 123 (260)
T KOG2739|consen 46 ELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL 123 (260)
T ss_pred hhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence 4444555554422 23455566666666666 44433333444556666666666666521 1122334455666666
Q ss_pred CCCccccccC---ccCcCCCCCCeeecCC
Q 040833 416 SRNNLSGRIP---KYLENFPFLQNLNLSF 441 (503)
Q Consensus 416 ~~n~l~~~~~---~~~~~~~~L~~L~l~~ 441 (503)
..|..++... ..|.-+++|++||-..
T Consensus 124 ~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 124 FNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ccCCccccccHHHHHHHHhhhhccccccc
Confidence 6665543211 2244455555554433
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=2.5e-05 Score=68.43 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=71.5
Q ss_pred CCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCE
Q 040833 38 NLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEV 117 (503)
Q Consensus 38 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 117 (503)
.+.+.+.|++.+|.+.++ ....+++.|+.|.|+-|+|+.. ..|..|++|++|+|..|.|.+--.-...+++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 355677888889988754 4468899999999999998843 347888999999999998863222333456788888
Q ss_pred EEccCCcccccCCc-----cccCCCCCCEEe
Q 040833 118 LNLCRNQFTGPIPA-----SISNASNLMRLV 143 (503)
Q Consensus 118 L~l~~n~~~~~~~~-----~~~~~~~L~~L~ 143 (503)
|.|..|+.-+..+. .+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88877766543332 234456666654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.59 E-value=0.00018 Score=72.70 Aligned_cols=185 Identities=19% Similarity=0.101 Sum_probs=96.7
Q ss_pred ccCcEEEeeccccccc--cchhccCCCCCcEEEccCC-ccccc----CCccccCCCCCCEEEccCCc-ccccCCcccc-C
Q 040833 215 TRLRILIVGNNQLFGN--IPSGLRNLVNLEFLHLGGN-QFTGR----IPGSIVDLYKLQRLALEGNK-FWGEIPSSIG-N 285 (503)
Q Consensus 215 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ls~n-~~~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~-~ 285 (503)
+.++.+.+.++.-... .......++.|++|+++++ ..... .......+++|+.++++.+. +++..-..+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 3788888877743322 2344567788888888863 11111 11233456778888888887 5444333333 3
Q ss_pred CCCCCEEEccCCc-CcccC-CccccCCCCCCEEECcCCcCccc--CCcchhccccccceeEccCCCCccCCCcchhcCCC
Q 040833 286 LTLLITLNFEENM-LEGSI-PSSLGKCQNLISLNLSNNNLSGT--IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKN 361 (503)
Q Consensus 286 ~~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~ 361 (503)
+++|++|.+.+|. +++.. ......+++|++|++++|..... +......++.+ +.+.+.. ...+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l-~~l~~~~----------~~~c~~ 336 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL-RELKLLS----------LNGCPS 336 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch-hhhhhhh----------cCCCcc
Confidence 7788888877776 44332 22345577788888887754311 11112222222 2221111 111334
Q ss_pred CCeEeCCCCccc---ccCCccccCCCCCCEEECCCCcCcccC-chhccCCCCC
Q 040833 362 LGAIDISENKLS---GQIPSSIGSCTRLEQLVMNGNFFQGNI-PSSLSSLRGI 410 (503)
Q Consensus 362 L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L 410 (503)
++.+.+.++.-. ......+..++.++.+.+..+...... ...+.+|+.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 444444443221 112224456777777777777744332 2445555555
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.44 E-value=0.00049 Score=69.51 Aligned_cols=63 Identities=21% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCCCCCEEECcCCc-ccccCchhHhhccccCcEEEeeccc-ccccc-chhccCCCCCcEEEccCCc
Q 040833 188 NASRLELLQISDNN-FGGMLPEAVGNLSTRLRILIVGNNQ-LFGNI-PSGLRNLVNLEFLHLGGNQ 250 (503)
Q Consensus 188 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~ls~n~ 250 (503)
.+++|+.++++++. +++..-..++...+.|++|.+.+|. +++.. ......++.|++|+++++.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 4433333343333355555555554 33221 1122345556666666553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.14 E-value=0.011 Score=30.61 Aligned_cols=19 Identities=42% Similarity=0.515 Sum_probs=9.7
Q ss_pred CCEEEcccceeeeeCCcccc
Q 040833 66 MLYLLLGVNKLSGEIPFSIY 85 (503)
Q Consensus 66 L~~L~L~~n~i~~~~~~~~~ 85 (503)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3443344
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.05 E-value=0.01 Score=30.72 Aligned_cols=11 Identities=73% Similarity=0.884 Sum_probs=4.1
Q ss_pred CEEeCCCCccc
Q 040833 411 ENLDLSRNNLS 421 (503)
Q Consensus 411 ~~L~L~~n~l~ 421 (503)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.90 E-value=0.0028 Score=53.29 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=41.1
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCc-ccccCCccc-cCCCCCCEEECCCC-cCcccCchhccCCCCCCEEeC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENK-LSGQIPSSI-GSCTRLEQLVMNGN-FFQGNIPSSLSSLRGIENLDL 415 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 415 (503)
+.++-+++.|..+....+..++.++.|.+.+|. +.+.-.+.+ .-.++|+.|++++| +||+-...++..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 445555555554544555555666666666553 221100001 12356666666666 455545555666666666666
Q ss_pred CCC
Q 040833 416 SRN 418 (503)
Q Consensus 416 ~~n 418 (503)
.+=
T Consensus 184 ~~l 186 (221)
T KOG3864|consen 184 YDL 186 (221)
T ss_pred cCc
Confidence 544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.66 E-value=0.00012 Score=72.16 Aligned_cols=163 Identities=23% Similarity=0.252 Sum_probs=78.1
Q ss_pred cCCCCCcEEEccCCcccccC----CccccCC-CCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcCccc----
Q 040833 236 RNLVNLEFLHLGGNQFTGRI----PGSIVDL-YKLQRLALEGNKFWGEIP----SSIGNLTLLITLNFEENMLEGS---- 302 (503)
Q Consensus 236 ~~~~~L~~L~ls~n~~~~~~----~~~~~~~-~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~---- 302 (503)
...+.|+.|++++|.+.+.. ...+... ..++.|++..|.++.... ..+...+.+++++++.|.+...
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence 34455555555555544211 1112221 344445555555543322 2233355556666666554211
Q ss_pred CCccc----cCCCCCCEEECcCCcCcccC----CcchhccccccceeEccCCCCccCC----CcchhcC-CCCCeEeCCC
Q 040833 303 IPSSL----GKCQNLISLNLSNNNLSGTI----PTEVIGLSSLSIYLDLSQNQLNGPL----PSNFGIL-KNLGAIDISE 369 (503)
Q Consensus 303 ~~~~~----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~l~~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~l~~ 369 (503)
.+..+ ....++++|++.+|.++... ...+...+.....+++.+|.+.+.. ...+..+ ..+++++++.
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 11122 23456666667666654211 1222233332244667777666431 1223333 4566777777
Q ss_pred CcccccC----CccccCCCCCCEEECCCCcCcc
Q 040833 370 NKLSGQI----PSSIGSCTRLEQLVMNGNFFQG 398 (503)
Q Consensus 370 n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~ 398 (503)
|.+++.. ...+..+++++++.+++|.++.
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 7776432 3344556677777777776663
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.20 E-value=0.002 Score=55.35 Aligned_cols=88 Identities=23% Similarity=0.287 Sum_probs=62.6
Q ss_pred chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833 355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL 434 (503)
Q Consensus 355 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 434 (503)
.+....+.+.||++.|++. ..-.-|+.+..|..|+++.|.+. ..|..+.+...++.+++..|..+ ..|..+...|++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3455667777777777765 34445666677777778777776 66777777777777777777777 556777777888
Q ss_pred CeeecCCCcCc
Q 040833 435 QNLNLSFNHFE 445 (503)
Q Consensus 435 ~~L~l~~n~l~ 445 (503)
+++++.+|++.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888777754
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.10 E-value=0.0018 Score=55.64 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=48.2
Q ss_pred cCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCc
Q 040833 12 LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLN 91 (503)
Q Consensus 12 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 91 (503)
+..++..+.||++.|++. ..-..|+.+..+..|+++.|.+. ..|..++....++++++..|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344555566666665554 33344555555666666655555 45555555555566665555554 4555566666666
Q ss_pred EEEccCCCC
Q 040833 92 YICVPVNQL 100 (503)
Q Consensus 92 ~L~l~~n~~ 100 (503)
++++.++.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555543
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.17 E-value=0.096 Score=25.02 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=6.8
Q ss_pred CCCcEEEcccCcCC
Q 040833 16 SKLRILAMHRNNLS 29 (503)
Q Consensus 16 ~~L~~L~l~~n~i~ 29 (503)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666655
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.36 E-value=0.15 Score=27.43 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=7.8
Q ss_pred CCCCEEeCCCCccccc
Q 040833 408 RGIENLDLSRNNLSGR 423 (503)
Q Consensus 408 ~~L~~L~L~~n~l~~~ 423 (503)
++|++|+|++|+++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.36 E-value=0.15 Score=27.43 Aligned_cols=16 Identities=44% Similarity=0.578 Sum_probs=7.8
Q ss_pred CCCCEEeCCCCccccc
Q 040833 408 RGIENLDLSRNNLSGR 423 (503)
Q Consensus 408 ~~L~~L~L~~n~l~~~ 423 (503)
++|++|+|++|+++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3445555555555433
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.76 E-value=0.0015 Score=64.54 Aligned_cols=89 Identities=26% Similarity=0.275 Sum_probs=53.0
Q ss_pred CCCCCEEECcCCcccccC----chhHhhccccCcEEEeeccccccc----cchhccCC-CCCcEEEccCCccccc----C
Q 040833 189 ASRLELLQISDNNFGGML----PEAVGNLSTRLRILIVGNNQLFGN----IPSGLRNL-VNLEFLHLGGNQFTGR----I 255 (503)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~ls~n~~~~~----~ 255 (503)
..++++|++.+|.++... ...+...+..+..+++..|.+.+. ....+..+ +.++.++++.|.+.+. +
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 455666777766655321 122333332255577777766543 12233444 6778888888887753 3
Q ss_pred CccccCCCCCCEEEccCCcccc
Q 040833 256 PGSIVDLYKLQRLALEGNKFWG 277 (503)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~ 277 (503)
...+..++.++.+.++.|.+.+
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 3445666788888888888764
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.22 E-value=0.049 Score=46.12 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=20.6
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCc
Q 040833 287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNN 322 (503)
Q Consensus 287 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 322 (503)
..++.++-+++.|.....+.+..++.++.|.+.+|.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345566666666655555555555666666665553
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.17 E-value=0.41 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=12.4
Q ss_pred CCCCEEECCCCcCcccCchhc
Q 040833 384 TRLEQLVMNGNFFQGNIPSSL 404 (503)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~~ 404 (503)
++|+.|+|++|.+....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777664433433
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.17 E-value=0.41 Score=25.71 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=12.4
Q ss_pred CCCCEEECCCCcCcccCchhc
Q 040833 384 TRLEQLVMNGNFFQGNIPSSL 404 (503)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~~ 404 (503)
++|+.|+|++|.+....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777664433433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.34 E-value=0.14 Score=27.03 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=4.6
Q ss_pred CCCEEeCCCCccc
Q 040833 409 GIENLDLSRNNLS 421 (503)
Q Consensus 409 ~L~~L~L~~n~l~ 421 (503)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 85
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.26 E-value=5.6 Score=38.71 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCEEECCCCcCcccC---chhccCCCCCCEEeCCCCccccc----cCccCcCCCCCCeeecCCCc
Q 040833 386 LEQLVMNGNFFQGNI---PSSLSSLRGIENLDLSRNNLSGR----IPKYLENFPFLQNLNLSFNH 443 (503)
Q Consensus 386 L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~ 443 (503)
+..+.++.|...... ......-+.+..|++++|..... +|...+....++.+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 445555555444211 11223334555666666655422 33334444445555555544
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=77.50 E-value=1.2 Score=52.68 Aligned_cols=45 Identities=24% Similarity=0.221 Sum_probs=32.7
Q ss_pred eCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCC
Q 040833 414 DLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSS 458 (503)
Q Consensus 414 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~ 458 (503)
||++|+|+.+.+..|..+++|+.|+|++|++.|.+...++...++
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~ 45 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAE 45 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHH
Confidence 577788876666777778888888888888888777655444443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.78 E-value=2.5 Score=22.78 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=7.5
Q ss_pred CCCCEEeCCCCccc
Q 040833 408 RGIENLDLSRNNLS 421 (503)
Q Consensus 408 ~~L~~L~L~~n~l~ 421 (503)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.52 E-value=2.4 Score=23.24 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=6.2
Q ss_pred CCCEEECCCCcCc
Q 040833 385 RLEQLVMNGNFFQ 397 (503)
Q Consensus 385 ~L~~L~L~~n~l~ 397 (503)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444444444444
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.28 E-value=3.5 Score=40.84 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=16.7
Q ss_pred CCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCC
Q 040833 87 LSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRN 123 (503)
Q Consensus 87 l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n 123 (503)
.+.+..+++++|++.. +-...+.+..|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444455555555431 011123333555555555555
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.45 E-value=5.4 Score=21.48 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=11.4
Q ss_pred CCCcEEEcccCcCCCCCCc
Q 040833 16 SKLRILAMHRNNLSGEIPS 34 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~ 34 (503)
++|++|+.++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35667777777766 4554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=62.02 E-value=4.6 Score=48.19 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=28.0
Q ss_pred ecCCCcCcccCC-CCCccCCCCceeccCCCCCcccC
Q 040833 438 NLSFNHFEGEVP-IKGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 438 ~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
||++|+|+...+ ....+.+|+.|++++|||.|+|-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 689999996655 23346788999999999999984
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.20 E-value=5.2 Score=39.75 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=38.3
Q ss_pred cCCCCCeEeCCCCccccc--CCccccCCCCCCEEECCCC--cCcccC-chhccCCCCCCEEeCCCCccc
Q 040833 358 ILKNLGAIDISENKLSGQ--IPSSIGSCTRLEQLVMNGN--FFQGNI-PSSLSSLRGIENLDLSRNNLS 421 (503)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~L~~n--~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 421 (503)
+.+.+..+.|++|++... ....-+..|.|+.|+|++| .+.... ...+ +...|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccc
Confidence 456777888888887632 1122334678888888888 333211 1112 2346788888888875
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=54.99 E-value=9.1 Score=20.38 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=6.2
Q ss_pred CCCCEEeCCCC
Q 040833 408 RGIENLDLSRN 418 (503)
Q Consensus 408 ~~L~~L~L~~n 418 (503)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 94
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=42.97 E-value=81 Score=31.15 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=39.2
Q ss_pred cCcEEEeeccccccccch---hccCCCCCcEEEccCCcccc----cCCccccCCCCCCEEEccCCccc
Q 040833 216 RLRILIVGNNQLFGNIPS---GLRNLVNLEFLHLGGNQFTG----RIPGSIVDLYKLQRLALEGNKFW 276 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~ls~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~ 276 (503)
-+..+.++.|........ ....-+.+.+|++++|.... .+|.+.....+++....+.|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 467777887776643332 23455788999999997653 44555555566776666666544
Done!