Query 040833
Match_columns 503
No_of_seqs 275 out of 3690
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 19:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040833.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040833hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-57 5.8E-62 480.3 39.7 464 13-485 197-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.5E-55 1.2E-59 462.7 37.4 452 1-465 160-714 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.7E-54 1.9E-58 443.8 38.1 461 1-472 42-564 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-52 1.1E-56 430.8 38.0 461 1-472 41-562 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-51 1.3E-55 428.2 41.0 231 241-472 383-626 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-50 1.7E-54 419.7 42.1 472 16-489 25-603 (680)
7 3t6q_A CD180 antigen; protein- 100.0 3.1E-50 1E-54 415.9 37.9 443 1-454 66-569 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 3E-50 1E-54 429.3 32.6 459 2-472 34-564 (844)
9 2z63_A TOLL-like receptor 4, v 100.0 1.9E-48 6.4E-53 399.8 35.8 446 16-472 28-535 (570)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2E-48 6.7E-53 402.4 34.5 439 1-458 65-571 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 1E-48 3.5E-53 401.8 32.1 443 1-454 37-540 (570)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-47 4.4E-52 409.0 33.3 455 14-481 22-558 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 9.8E-47 3.3E-51 385.1 29.6 438 16-472 26-514 (549)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-46 8.7E-51 379.2 27.8 446 2-471 10-484 (520)
15 4eco_A Uncharacterized protein 100.0 1.3E-45 4.6E-50 380.8 26.5 413 16-448 81-603 (636)
16 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-45 1.7E-49 369.7 27.4 437 1-452 30-488 (520)
17 2z81_A CD282 antigen, TOLL-lik 100.0 2E-44 6.8E-49 368.0 30.7 447 15-483 4-510 (549)
18 4eco_A Uncharacterized protein 100.0 8.6E-45 3E-49 374.8 25.5 406 1-424 90-603 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 9.3E-43 3.2E-47 362.3 38.3 457 7-471 45-583 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 5E-44 1.7E-48 374.9 25.6 433 16-468 323-864 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.1E-43 1.4E-47 358.6 30.5 439 14-471 29-513 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 7.2E-43 2.5E-47 366.1 24.6 427 1-445 332-864 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-42 1.1E-46 352.0 28.5 431 2-453 41-518 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.1E-40 3.7E-45 332.3 28.8 392 19-453 13-416 (455)
25 3v47_A TOLL-like receptor 5B a 100.0 2.4E-39 8.3E-44 322.6 30.6 373 16-425 30-412 (455)
26 4g8a_A TOLL-like receptor 4; l 100.0 4.3E-39 1.5E-43 334.7 32.8 448 1-457 61-592 (635)
27 2id5_A Lingo-1, leucine rich r 100.0 7.5E-38 2.6E-42 313.5 25.8 347 91-473 14-361 (477)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-37 4.5E-42 307.4 26.5 393 14-468 9-429 (454)
29 1o6v_A Internalin A; bacterial 100.0 3.2E-36 1.1E-40 300.3 32.5 345 15-422 45-389 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 9.1E-37 3.1E-41 301.4 26.3 382 2-449 21-433 (454)
31 1o6v_A Internalin A; bacterial 100.0 1.5E-35 5.3E-40 295.3 33.4 346 39-447 45-390 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 9.5E-36 3.3E-40 294.3 26.4 363 4-450 30-392 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 9.1E-35 3.1E-39 291.1 30.8 319 19-349 14-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.8E-34 9.4E-39 283.9 28.2 356 27-465 29-384 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 3.3E-34 1.1E-38 279.3 25.3 333 87-471 44-377 (390)
36 4fmz_A Internalin; leucine ric 100.0 3.7E-33 1.3E-37 267.6 28.5 305 86-445 42-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.3E-38 275.1 24.6 309 16-374 45-353 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.4E-33 4.9E-38 289.5 25.5 342 87-480 50-392 (597)
39 1ogq_A PGIP-2, polygalacturona 100.0 9E-34 3.1E-38 266.9 20.1 254 216-472 51-308 (313)
40 4fmz_A Internalin; leucine ric 100.0 2.8E-32 9.5E-37 261.5 28.8 304 39-397 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 6.9E-33 2.3E-37 284.4 24.2 314 112-473 50-363 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 8.3E-36 2.8E-40 297.6 -3.0 365 60-446 24-441 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 8.5E-35 2.9E-39 290.3 0.3 305 161-468 86-440 (461)
44 1xku_A Decorin; proteoglycan, 100.0 1E-30 3.5E-35 248.5 28.0 287 17-346 32-329 (330)
45 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-32 2.1E-36 254.4 18.6 255 190-449 50-308 (313)
46 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-31 1.9E-35 250.5 24.5 286 17-346 34-330 (332)
47 1xku_A Decorin; proteoglycan, 100.0 6.8E-30 2.3E-34 242.9 27.7 246 191-445 53-306 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 4.4E-30 1.5E-34 244.3 25.5 266 190-465 54-330 (332)
49 3ogk_B Coronatine-insensitive 100.0 2E-32 7E-37 281.9 0.9 431 5-441 62-547 (592)
50 2z66_A Variable lymphocyte rec 100.0 1.2E-29 4.2E-34 238.5 18.3 276 193-474 10-293 (306)
51 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-29 6.5E-34 234.6 19.0 248 239-489 32-280 (285)
52 3zyi_A Leucine-rich repeat-con 100.0 7E-29 2.4E-33 246.2 24.1 254 192-452 56-310 (452)
53 3zyj_A Leucine-rich repeat-con 100.0 9.3E-29 3.2E-33 244.5 24.0 255 192-453 45-300 (440)
54 3zyj_A Leucine-rich repeat-con 100.0 3.4E-28 1.2E-32 240.4 24.9 250 216-471 44-295 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 4.6E-28 1.6E-32 240.3 25.4 251 216-472 55-307 (452)
56 3ogk_B Coronatine-insensitive 100.0 1.3E-31 4.6E-36 275.8 -3.2 405 33-447 66-528 (592)
57 2z80_A TOLL-like receptor 2, v 100.0 9.4E-29 3.2E-33 237.3 16.2 258 190-449 52-318 (353)
58 2z80_A TOLL-like receptor 2, v 100.0 6.3E-29 2.2E-33 238.5 15.0 279 188-471 29-317 (353)
59 2z66_A Variable lymphocyte rec 100.0 5.4E-28 1.8E-32 227.3 20.4 251 216-471 8-264 (306)
60 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.6E-32 222.8 19.3 251 193-449 14-265 (285)
61 4fcg_A Uncharacterized protein 99.9 5.8E-27 2E-31 221.7 19.9 224 216-445 82-314 (328)
62 4fcg_A Uncharacterized protein 99.9 1.5E-26 5.1E-31 218.9 19.8 225 190-421 81-314 (328)
63 1wwl_A Monocyte differentiatio 99.9 6.2E-28 2.1E-32 227.1 8.1 248 187-446 40-310 (312)
64 2p1m_B Transport inhibitor res 99.9 1E-29 3.5E-34 261.9 -5.6 427 11-442 61-541 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 6E-27 2.1E-31 220.9 12.0 257 192-464 12-271 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-27 2E-31 221.0 11.7 243 216-472 11-254 (317)
67 2p1m_B Transport inhibitor res 99.9 4.6E-29 1.6E-33 257.0 -3.6 398 13-421 102-544 (594)
68 3oja_A Leucine-rich immune mol 99.9 1.8E-26 6.1E-31 230.1 13.1 242 216-472 35-286 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 2.2E-25 7.4E-30 206.1 19.4 211 240-452 29-244 (276)
70 3oja_A Leucine-rich immune mol 99.9 3.1E-26 1E-30 228.4 12.6 246 188-449 32-286 (487)
71 2o6q_A Variable lymphocyte rec 99.9 1.9E-24 6.6E-29 198.9 23.4 206 240-449 17-222 (270)
72 1p9a_G Platelet glycoprotein I 99.9 1.3E-24 4.3E-29 201.7 21.4 207 235-449 6-212 (290)
73 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.4E-29 201.7 20.3 224 244-472 12-241 (276)
74 3g06_A SSPH2 (leucine-rich rep 99.9 6.7E-24 2.3E-28 215.7 28.0 268 16-334 40-307 (622)
75 2o6q_A Variable lymphocyte rec 99.9 3E-24 1E-28 197.6 22.9 205 264-472 17-222 (270)
76 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4E-31 218.4 4.6 244 215-468 43-309 (312)
77 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-23 5.7E-28 212.8 27.5 182 216-427 122-303 (622)
78 1p9a_G Platelet glycoprotein I 99.9 8.5E-24 2.9E-28 196.2 21.6 197 216-420 11-207 (290)
79 3rfs_A Internalin B, repeat mo 99.9 7.2E-23 2.5E-27 188.5 16.7 202 236-449 38-239 (272)
80 3goz_A Leucine-rich repeat-con 99.9 3.5E-24 1.2E-28 205.9 6.5 251 195-447 3-299 (362)
81 2xwt_C Thyrotropin receptor; s 99.9 9.1E-23 3.1E-27 184.2 14.8 196 240-465 32-236 (239)
82 4glp_A Monocyte differentiatio 99.9 7.7E-23 2.6E-27 192.2 14.8 201 239-446 91-308 (310)
83 2xwt_C Thyrotropin receptor; s 99.9 9.6E-23 3.3E-27 184.0 14.6 175 288-466 32-216 (239)
84 2ca6_A RAN GTPase-activating p 99.9 4.1E-24 1.4E-28 207.6 4.3 241 207-449 25-320 (386)
85 3rfs_A Internalin B, repeat mo 99.9 8.6E-22 2.9E-26 181.3 19.6 211 242-465 22-232 (272)
86 3m19_A Variable lymphocyte rec 99.9 1E-21 3.4E-26 178.6 19.7 159 288-447 36-194 (251)
87 2ast_B S-phase kinase-associat 99.9 1.7E-23 5.7E-28 199.5 8.1 250 191-449 48-310 (336)
88 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.9E-28 202.4 5.0 250 219-469 2-298 (362)
89 4glp_A Monocyte differentiatio 99.9 6E-22 2.1E-26 186.1 15.8 225 190-422 64-308 (310)
90 3m19_A Variable lymphocyte rec 99.9 2.9E-21 9.9E-26 175.6 19.1 180 287-470 14-194 (251)
91 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.8E-26 182.5 17.4 189 216-421 42-230 (308)
92 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.7E-27 193.9 7.6 245 214-466 46-304 (336)
93 2ca6_A RAN GTPase-activating p 99.9 2.3E-23 7.8E-28 202.3 2.6 239 230-469 23-317 (386)
94 1h6u_A Internalin H; cell adhe 99.9 1.7E-20 5.7E-25 175.8 19.0 196 235-447 37-232 (308)
95 4ay9_X Follicle-stimulating ho 99.8 2.3E-20 7.7E-25 178.4 17.0 241 193-442 12-256 (350)
96 2v9t_B SLIT homolog 2 protein 99.8 1.5E-20 5.2E-25 166.8 13.8 195 290-490 14-208 (220)
97 4ay9_X Follicle-stimulating ho 99.8 6E-20 2E-24 175.4 17.8 241 163-419 12-257 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-20 7.6E-25 165.7 12.9 195 290-490 14-209 (220)
99 2v9t_B SLIT homolog 2 protein 99.8 1.5E-19 5.1E-24 160.4 15.3 155 314-472 14-169 (220)
100 2o6s_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 157.2 14.6 153 289-449 30-182 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 6.3E-19 2.2E-23 156.3 15.9 156 313-472 13-170 (220)
102 2xot_A Amphoterin-induced prot 99.8 2.4E-19 8.3E-24 171.9 13.7 181 266-450 21-207 (361)
103 2o6s_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 155.5 14.5 162 264-433 29-190 (208)
104 2xot_A Amphoterin-induced prot 99.8 4.5E-19 1.5E-23 170.0 13.9 176 242-421 21-202 (361)
105 3e6j_A Variable lymphocyte rec 99.8 2.5E-18 8.7E-23 153.5 16.9 155 290-449 22-176 (229)
106 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.5E-23 162.1 14.4 171 236-421 43-213 (291)
107 3e6j_A Variable lymphocyte rec 99.8 2.3E-18 7.9E-23 153.8 16.1 155 312-471 20-175 (229)
108 1h6t_A Internalin B; cell adhe 99.8 1.7E-18 5.7E-23 160.7 14.1 172 260-446 43-214 (291)
109 3cvr_A Invasion plasmid antige 99.8 5.9E-18 2E-22 170.0 17.8 183 216-427 60-249 (571)
110 1w8a_A SLIT protein; signaling 99.8 1.1E-18 3.7E-23 151.4 10.5 168 314-487 11-179 (192)
111 3cvr_A Invasion plasmid antige 99.8 1.4E-17 4.9E-22 167.1 17.5 181 240-449 60-247 (571)
112 1m9s_A Internalin B; cell inva 99.8 1.4E-17 4.6E-22 169.2 17.2 175 236-425 40-214 (605)
113 3sb4_A Hypothetical leucine ri 99.8 1.5E-18 5E-23 164.4 9.1 101 238-341 225-326 (329)
114 4ezg_A Putative uncharacterize 99.7 5.1E-18 1.8E-22 147.9 11.5 103 339-445 91-194 (197)
115 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6.3E-22 168.2 16.2 187 244-447 26-212 (605)
116 3sb4_A Hypothetical leucine ri 99.7 8.1E-18 2.8E-22 159.2 12.2 270 159-449 24-314 (329)
117 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.7E-22 145.2 12.3 153 13-173 41-194 (197)
118 2wfh_A SLIT homolog 2 protein 99.7 1.3E-17 4.6E-22 144.4 12.1 172 314-492 13-184 (193)
119 4fs7_A Uncharacterized protein 99.7 5.6E-16 1.9E-20 150.4 23.3 82 356-440 293-374 (394)
120 4fs7_A Uncharacterized protein 99.7 7.2E-16 2.5E-20 149.6 23.1 330 9-389 64-393 (394)
121 1xeu_A Internalin C; cellular 99.7 1.9E-17 6.5E-22 151.0 10.7 169 238-422 18-186 (263)
122 1xeu_A Internalin C; cellular 99.7 3.5E-17 1.2E-21 149.3 10.2 166 216-397 20-185 (263)
123 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.5E-21 137.1 13.4 129 339-471 13-142 (193)
124 4fdw_A Leucine rich hypothetic 99.7 3.1E-15 1.1E-19 144.4 21.7 242 190-446 113-359 (401)
125 4fdw_A Leucine rich hypothetic 99.7 1E-14 3.4E-19 140.9 25.2 265 14-323 111-382 (401)
126 1dce_A Protein (RAB geranylger 99.7 9.6E-19 3.3E-23 176.6 -4.4 207 236-461 346-566 (567)
127 2ell_A Acidic leucine-rich nuc 99.7 2.4E-16 8.3E-21 133.5 11.1 133 311-446 24-161 (168)
128 1w8a_A SLIT protein; signaling 99.7 3.4E-16 1.1E-20 135.6 11.7 173 290-470 11-185 (192)
129 1dce_A Protein (RAB geranylger 99.7 2.2E-18 7.4E-23 174.0 -4.4 121 313-439 443-567 (567)
130 2ell_A Acidic leucine-rich nuc 99.6 5.6E-16 1.9E-20 131.3 11.0 135 14-151 22-161 (168)
131 2o6r_A Variable lymphocyte rec 99.6 1.5E-15 5E-20 129.9 13.2 133 313-449 9-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 129.5 8.2 85 356-440 60-148 (149)
133 2o6r_A Variable lymphocyte rec 99.6 4.8E-15 1.7E-19 126.6 13.9 130 339-471 10-140 (177)
134 2je0_A Acidic leucine-rich nuc 99.6 9.8E-16 3.3E-20 126.9 9.3 128 14-145 15-148 (149)
135 4b8c_D Glucose-repressible alc 99.6 4.8E-16 1.6E-20 161.9 6.2 142 279-425 216-358 (727)
136 4gt6_A Cell surface protein; l 99.6 7E-13 2.4E-17 128.5 26.6 330 33-420 56-390 (394)
137 4gt6_A Cell surface protein; l 99.6 8.8E-13 3E-17 127.8 26.3 334 4-394 51-388 (394)
138 4b8c_D Glucose-repressible alc 99.6 1.8E-15 6.2E-20 157.6 7.5 155 79-249 215-369 (727)
139 1a9n_A U2A', U2A'; complex (nu 99.6 7.9E-15 2.7E-19 125.1 10.1 134 10-150 13-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.6 5.1E-15 1.7E-19 126.3 8.5 131 308-445 16-153 (176)
141 3g39_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 119.7 11.6 108 339-449 12-119 (170)
142 2r9u_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 117.8 11.5 108 339-449 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 116.3 11.9 107 362-471 11-118 (170)
144 2r9u_A Variable lymphocyte rec 99.5 2.7E-13 9.1E-18 115.0 11.9 107 362-471 14-121 (174)
145 1ds9_A Outer arm dynein; leuci 99.5 5.9E-16 2E-20 134.9 -6.0 132 306-445 43-185 (198)
146 1ds9_A Outer arm dynein; leuci 99.4 8.9E-16 3E-20 133.8 -6.7 135 12-152 14-155 (198)
147 4h09_A Hypothetical leucine ri 99.4 2.8E-10 9.4E-15 109.7 26.9 146 258-409 212-357 (379)
148 4h09_A Hypothetical leucine ri 99.4 1.8E-10 6.2E-15 111.0 25.5 167 260-433 191-357 (379)
149 3un9_A NLR family member X1; l 99.4 6.7E-14 2.3E-18 133.8 -0.2 159 263-422 72-253 (372)
150 3un9_A NLR family member X1; l 99.3 3.4E-14 1.2E-18 135.8 -3.9 136 263-399 101-254 (372)
151 2ifg_A High affinity nerve gro 99.3 9.3E-12 3.2E-16 118.5 10.8 108 339-449 11-120 (347)
152 2ifg_A High affinity nerve gro 99.3 1.7E-11 6E-16 116.6 11.4 107 363-471 11-119 (347)
153 2ra8_A Uncharacterized protein 98.9 5.8E-10 2E-14 105.6 5.0 84 358-443 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.6E-14 103.0 5.0 65 382-446 250-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 9.7E-09 3.3E-13 87.7 1.7 19 306-324 31-50 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.1E-13 85.6 3.4 119 282-421 31-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 1.7E-08 5.8E-13 83.7 1.1 83 361-443 62-150 (176)
158 3e4g_A ATP synthase subunit S, 98.4 5.9E-08 2E-12 80.5 1.2 81 339-419 64-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.5E-12 84.1 2.5 64 358-422 168-234 (267)
160 3rw6_A Nuclear RNA export fact 98.3 1E-07 3.5E-12 85.4 0.1 96 365-461 148-257 (267)
161 3rfe_A Platelet glycoprotein I 97.5 3.9E-05 1.3E-09 60.6 3.0 63 387-451 11-74 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 6.4E-05 2.2E-09 63.5 4.0 35 360-394 98-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5.1E-09 61.2 4.2 105 339-443 44-168 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0038 1.3E-07 49.0 6.7 55 364-420 12-67 (130)
165 2lz0_A Uncharacterized protein 85.5 2.1 7.2E-05 31.3 6.1 43 5-48 9-51 (100)
166 2lz0_A Uncharacterized protein 82.7 1.7 5.7E-05 31.8 4.5 47 274-321 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-57 Score=480.33 Aligned_cols=464 Identities=34% Similarity=0.525 Sum_probs=326.6
Q ss_pred CCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833 13 GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY 92 (503)
Q Consensus 13 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (503)
..+++|++|++++|.+++..|. |.++++|++|++++|.+.+..|.+|..+++|++|++++|.+.+..|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 4555555555555555544444 555555555555555555555555555555555555555555444332 4555555
Q ss_pred EEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC--ccCCCCCcEEEcccc
Q 040833 93 ICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRN 170 (503)
Q Consensus 93 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n 170 (503)
|++++|.+.+.+|..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 555555554445544443335555555555555545555555555555555555554433332 444455555555544
Q ss_pred cCCCCCCCCc-------------------cccccccC--CCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccc
Q 040833 171 HLGNGKKDDL-------------------EFVNSLVN--ASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG 229 (503)
Q Consensus 171 ~l~~~~~~~~-------------------~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 229 (503)
.+.......+ ..+..+.. +++|++|++++|.+.+..|..+..++ +|++|++++|.+.+
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSG 432 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEES
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccC
Confidence 4331100000 11222222 56677777777777777777777765 78888888887777
Q ss_pred ccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040833 230 NIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK 309 (503)
Q Consensus 230 ~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 309 (503)
..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|.++..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 77777777888888888888877777777777888888888888887777777888888888888888887777777788
Q ss_pred CCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcc----------------------------------
Q 040833 310 CQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSN---------------------------------- 355 (503)
Q Consensus 310 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~---------------------------------- 355 (503)
+++|++|++++|++.+..|..+..++++ +.|++++|.+.+.+|..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 8888888888888877788888888777 78888888776554433
Q ss_pred ------------------------------------hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc
Q 040833 356 ------------------------------------FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399 (503)
Q Consensus 356 ------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 399 (503)
+..++.|+.|++++|.+++.+|..+.++++|+.|+|++|.+++.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 33457899999999999999999999999999999999999999
Q ss_pred CchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCCCC
Q 040833 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLST 479 (503)
Q Consensus 400 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~ 479 (503)
+|..++.+++|+.|||++|++++.+|..+..+++|++|++++|+++|.+|..+.|..+....+.|||.+||.+ ++.
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~ 747 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPR 747 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCC
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcC
Confidence 9999999999999999999999999999999999999999999999999998889999999999999999865 346
Q ss_pred CCCCCc
Q 040833 480 CSIKES 485 (503)
Q Consensus 480 ~~~~~~ 485 (503)
|.-...
T Consensus 748 C~~~~~ 753 (768)
T 3rgz_A 748 CDPSNA 753 (768)
T ss_dssp CCSCC-
T ss_pred CCCCcc
Confidence 754433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-55 Score=462.70 Aligned_cols=452 Identities=34% Similarity=0.485 Sum_probs=307.8
Q ss_pred CCccccCCCcc---cCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceee
Q 040833 1 FNELVGKVPGK---LGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS 77 (503)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~ 77 (503)
.|.+++..+.. ++++++|++|++++|.+++..+ +..+++|++|++++|.+.+..|. +..+++|++|++++|.+.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC
Confidence 47788888887 8999999999999999986555 48899999999999999987777 999999999999999999
Q ss_pred eeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCC-CCCCEEecccCcCcccCCC-
Q 040833 78 GEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA-SNLMRLVIAKNGFSGKVPS- 155 (503)
Q Consensus 78 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~- 155 (503)
+..|..+.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..+.
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 313 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH
Confidence 888999999999999999999998777765 59999999999999998999988775 9999999999999877776
Q ss_pred ccCCCCCcEEEcccccCCCCCCCCccccc-cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccccc---
Q 040833 156 LKILHKLEWVGISRNHLGNGKKDDLEFVN-SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI--- 231 (503)
Q Consensus 156 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--- 231 (503)
+..+++|++|++++|.+.+ ..+. .+..+++|++|++++|.+.+..|..+..++.+|++|++++|.+.+..
T Consensus 314 ~~~l~~L~~L~L~~n~l~~------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 314 FGSCSLLESLALSSNNFSG------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp GGGCTTCCEEECCSSEEEE------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred HhcCCCccEEECCCCcccC------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 9999999999999998863 2232 26677888888888888877777777666445666666666555444
Q ss_pred -----------------------chhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 040833 232 -----------------------PSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTL 288 (503)
Q Consensus 232 -----------------------~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 288 (503)
|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 444444445555555555544444444555555555555555554444555555555
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833 289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS 368 (503)
Q Consensus 289 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 368 (503)
|++|++++|.+.+..|..+..+++|++|++++|++.+..|.++..++++ ++|++++|.+.+..|..+..+++|++|+++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 5555555555554455555555555555555555555555555555555 555555555555555555555555555555
Q ss_pred CCcccccCCcc---------------------------------------------------------------------
Q 040833 369 ENKLSGQIPSS--------------------------------------------------------------------- 379 (503)
Q Consensus 369 ~n~l~~~~~~~--------------------------------------------------------------------- 379 (503)
+|++++.+|..
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 55554333321
Q ss_pred -ccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCC
Q 040833 380 -IGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNS 457 (503)
Q Consensus 380 -~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l 457 (503)
+..+++|+.|++++|.+++.+|..++.+++|+.|+|++|++++.+|..+..+++|++||+++|++++.+|. ...+++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 22234455555555555555555555555555555555555555555555555555555555555555442 3334555
Q ss_pred CceeccCC
Q 040833 458 SAISIDGN 465 (503)
Q Consensus 458 ~~l~~~~n 465 (503)
+.+++++|
T Consensus 707 ~~L~ls~N 714 (768)
T 3rgz_A 707 TEIDLSNN 714 (768)
T ss_dssp SEEECCSS
T ss_pred CEEECcCC
Confidence 55555555
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.7e-54 Score=443.78 Aligned_cols=461 Identities=21% Similarity=0.206 Sum_probs=369.6
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 80 (503)
+|.|++..|.+|+++++|++|++++|.+++..|+.|.++++|++|++++|.+....|.+|.++++|++|++++|.+....
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 36777777778888888888888888887777777888888888888888887777777888888888888888877655
Q ss_pred CccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC--EEecccCcCcccCCCccC
Q 040833 81 PFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM--RLVIAKNGFSGKVPSLKI 158 (503)
Q Consensus 81 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~~~~~~~~l~~ 158 (503)
+..|.++++|++|++++|.+.+..+..+.. +++|++|++++|.+++..+..+..+++|+ +|++++|.+.+..+....
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~ 200 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT
T ss_pred cchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhh
Confidence 667778888888888888776322233333 77888888888888766677777888887 777888877766554333
Q ss_pred CCC----------------------------------------------------CcEEEcccccCCCCCCCCccccccc
Q 040833 159 LHK----------------------------------------------------LEWVGISRNHLGNGKKDDLEFVNSL 186 (503)
Q Consensus 159 l~~----------------------------------------------------L~~L~l~~n~l~~~~~~~~~~~~~l 186 (503)
... |+++++++|.+.. .....+
T Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~------~~~~~~ 274 (606)
T 3t6q_A 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN------ISSNTF 274 (606)
T ss_dssp TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS------CCTTTT
T ss_pred hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc------cCHHHh
Confidence 333 3444444444433 122346
Q ss_pred cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCC-ccccCCCCC
Q 040833 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP-GSIVDLYKL 265 (503)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~~~~~~L 265 (503)
..+++|++|++++|.+. .+|..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 67788999999999887 6676777775 89999999999887777788889999999999998875444 458889999
Q ss_pred CEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc-chhccccccceeE
Q 040833 266 QRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT-EVIGLSSLSIYLD 342 (503)
Q Consensus 266 ~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~~L~ 342 (503)
++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..++.+ +.|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-CEEE
Confidence 99999999988665 66788999999999999999888888899999999999999998866554 37778888 8999
Q ss_pred ccCCCCccCCCcchhcCCCCCeEeCCCCccccc---CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833 343 LSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ---IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419 (503)
Q Consensus 343 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 419 (503)
+++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 999999988888899999999999999999762 33578899999999999999998888999999999999999999
Q ss_pred cccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 420 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
+++..|..+..++.| .|++++|++++..|. ...+++|+.+++++||+.|+|-
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999 999999999977663 3557899999999999999753
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.1e-52 Score=430.76 Aligned_cols=461 Identities=20% Similarity=0.162 Sum_probs=370.4
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 80 (503)
.|.+++..+.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+....|++|.++++|++|++++|.+....
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 36677777778888888888888888887777777888888888888888887777778888888888888888877666
Q ss_pred CccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC----EEecccCcCcccCCC
Q 040833 81 PFSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLM----RLVIAKNGFSGKVPS 155 (503)
Q Consensus 81 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~ 155 (503)
+..|+++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..+..+.+|+ ++++++|.+....+.
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred ccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcc
Confidence 5678888888888888887764 45666654 88888888888888776666666655443 688888877766666
Q ss_pred ccCCCCCcEEEcccccCCCC---------------------------------------------------CCCCccccc
Q 040833 156 LKILHKLEWVGISRNHLGNG---------------------------------------------------KKDDLEFVN 184 (503)
Q Consensus 156 l~~l~~L~~L~l~~n~l~~~---------------------------------------------------~~~~~~~~~ 184 (503)
.....+|++|++++|.+... ...-.....
T Consensus 200 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 200 AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp TTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG
T ss_pred cccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccc
Confidence 44444788888888765310 000001112
Q ss_pred cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCC
Q 040833 185 SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYK 264 (503)
Q Consensus 185 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~ 264 (503)
.+..+++|+.|+++++.+. .++ .+...+ +|++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++
T Consensus 280 ~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~-~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~ 351 (606)
T 3vq2_A 280 KFHCLANVSAMSLAGVSIK-YLE-DVPKHF-KWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPS 351 (606)
T ss_dssp SCGGGTTCSEEEEESCCCC-CCC-CCCTTC-CCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTT
T ss_pred ccccCCCCCEEEecCccch-hhh-hccccc-cCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCC
Confidence 2566788999999998886 344 566654 899999999998 45663 4 8899999999999554333 6778999
Q ss_pred CCEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhcccccccee
Q 040833 265 LQRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIYL 341 (503)
Q Consensus 265 L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L 341 (503)
|++|++++|.+.+.. +..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..++++ ++|
T Consensus 352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L 429 (606)
T 3vq2_A 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYL 429 (606)
T ss_dssp CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEE
T ss_pred CCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEE
Confidence 999999999988663 7778899999999999999885 45788999999999999999987766 678888888 999
Q ss_pred EccCCCCccCCCcchhcCCCCCeEeCCCCcccc-cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833 342 DLSQNQLNGPLPSNFGILKNLGAIDISENKLSG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 342 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 420 (503)
++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 999999998888999999999999999999987 4788999999999999999999988899999999999999999999
Q ss_pred ccccCccCcCCCCCCeeecCCCcCcccCCCCCccC-CCCceeccCCCCCcccC
Q 040833 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFS-NSSAISIDGNDNLCGGI 472 (503)
Q Consensus 421 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~l~~l~~~~n~~~c~~~ 472 (503)
++..|..+..+++|++|++++|+++..++....++ +|+.+++++||+.|+|.
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 98889999999999999999999996665555565 69999999999999764
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-51 Score=428.18 Aligned_cols=231 Identities=22% Similarity=0.197 Sum_probs=170.4
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIP-SSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS 319 (503)
Q Consensus 241 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 319 (503)
|+.|++++|.+.+..+.++..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 3333333344444444555555666666666666554333 445566666666666666655555566666666666666
Q ss_pred CCcCc--ccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCC--------ccccCCCCCCEE
Q 040833 320 NNNLS--GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIP--------SSIGSCTRLEQL 389 (503)
Q Consensus 320 ~n~~~--~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~~L~~L 389 (503)
+|.+. +..|..+..++++ +.|++++|.+++..+..|..+++|++|++++|.+++..+ ..+.++++|++|
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L 541 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEE
T ss_pred cccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEE
Confidence 66654 3456777778888 899999999987777778889999999999998875422 237788999999
Q ss_pred ECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CC-ccCCCCceeccCCCC
Q 040833 390 VMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KG-VFSNSSAISIDGNDN 467 (503)
Q Consensus 390 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~~~~l~~l~~~~n~~ 467 (503)
++++|.+++..+..|.++++|++|++++|+++...+..|..+++|+.|++++|++++..+. .. .+++|+.+++++|||
T Consensus 542 ~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 9999999866666799999999999999999987778889999999999999999976653 22 578999999999999
Q ss_pred CcccC
Q 040833 468 LCGGI 472 (503)
Q Consensus 468 ~c~~~ 472 (503)
.|+|-
T Consensus 622 ~c~c~ 626 (680)
T 1ziw_A 622 DCTCE 626 (680)
T ss_dssp CBCCC
T ss_pred ccCCc
Confidence 99874
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-50 Score=419.69 Aligned_cols=472 Identities=20% Similarity=0.199 Sum_probs=237.4
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 95 (503)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..|++|.++++|++|++++|.+....+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 45666666666666555555666666666666666666555566666666666666666665433335666666666666
Q ss_pred cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC---ccCCCCCcEEEcccccC
Q 040833 96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS---LKILHKLEWVGISRNHL 172 (503)
Q Consensus 96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---l~~l~~L~~L~l~~n~l 172 (503)
++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. ...+++|++|++++|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 666655 33333233366666666666666555555555666666666666655544332 12345566666665555
Q ss_pred CCCCCCCccccccc---------------------cCCCCCCEEECcCCcccccCchhHhhcc-ccCcEEEeeccccccc
Q 040833 173 GNGKKDDLEFVNSL---------------------VNASRLELLQISDNNFGGMLPEAVGNLS-TRLRILIVGNNQLFGN 230 (503)
Q Consensus 173 ~~~~~~~~~~~~~l---------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~ 230 (503)
.......+.....+ ...++|+.|++++|.+.+..+..+..+. ++|++|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 44222111100000 0113444455555544444444443332 1245555555444444
Q ss_pred cchhccCCCCCcEEEccCCcccccCCcc---------------------------------ccCCCCCCEEEccCCcccc
Q 040833 231 IPSGLRNLVNLEFLHLGGNQFTGRIPGS---------------------------------IVDLYKLQRLALEGNKFWG 277 (503)
Q Consensus 231 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~---------------------------------~~~~~~L~~L~l~~n~~~~ 277 (503)
.+..+..+++|++|++++|.+.+..+.. |..+++|++|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 4444444444444444444444333333 3334444444444444444
Q ss_pred cCCccccCCCCCCEEEccCC----------------------------cCcccCCccccCCCCCCEEECcCCcCcccCC-
Q 040833 278 EIPSSIGNLTLLITLNFEEN----------------------------MLEGSIPSSLGKCQNLISLNLSNNNLSGTIP- 328 (503)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n----------------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~- 328 (503)
..+..|..+++|++|++++| .+.+..+.++..+++|++|++++|.+.+.++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 44444444444444444333 3333333344444444444444444443332
Q ss_pred cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccc--ccCCccccCCCCCCEEECCCCcCcccCchhccC
Q 040833 329 TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS--GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS 406 (503)
Q Consensus 329 ~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 406 (503)
..+..++.+ +++++++|.+.+..+..|..+++|++|++++|.+. +..|..+..+++|++|++++|.+++..+..|.+
T Consensus 424 ~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 424 QEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp GGGTTCTTC-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCcccc-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 333444444 44555555444444444444555555555555443 234555555666666666666666555555666
Q ss_pred CCCCCEEeCCCCccccccC--------ccCcCCCCCCeeecCCCcCcccCC-CCCccCCCCceeccCCCC---------C
Q 040833 407 LRGIENLDLSRNNLSGRIP--------KYLENFPFLQNLNLSFNHFEGEVP-IKGVFSNSSAISIDGNDN---------L 468 (503)
Q Consensus 407 l~~L~~L~L~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~---------~ 468 (503)
+++|++|++++|+++...+ ..|..+++|++|++++|.++...+ ....+++|+.+++++|.. .
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 6666666666666654321 124555666666666666663332 134455666666665521 1
Q ss_pred cccCCCCCCCCCCCCCccccc
Q 040833 469 CGGISELHLSTCSIKESKQSR 489 (503)
Q Consensus 469 c~~~~~~~ls~~~~~~~~~~~ 489 (503)
+..+..+++++|.+..+.+..
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~ 603 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKV 603 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHH
T ss_pred CCCCCEEECCCCcCCccChhH
Confidence 244555666666666655543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-50 Score=415.87 Aligned_cols=443 Identities=21% Similarity=0.185 Sum_probs=389.8
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 80 (503)
.|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|++++|.+....+..|..+++|++|++++|++.+..
T Consensus 66 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (606)
T 3t6q_A 66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence 47899999999999999999999999999888999999999999999999999877888999999999999999998655
Q ss_pred CccccCCCCCcEEEccCCCCcccCchhhhcCCCCCC--EEEccCCcccccCCccccCC----------------------
Q 040833 81 PFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLE--VLNLCRNQFTGPIPASISNA---------------------- 136 (503)
Q Consensus 81 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~--~L~l~~n~~~~~~~~~~~~~---------------------- 136 (503)
...+..+++|++|++++|.+.+..+..+. .+++|+ .|++++|.+++..+..+...
T Consensus 146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 224 (606)
T 3t6q_A 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224 (606)
T ss_dssp CCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTT
T ss_pred cccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccc
Confidence 45566699999999999999844455555 599999 89999999987666554321
Q ss_pred -----------------------------CCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccc
Q 040833 137 -----------------------------SNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186 (503)
Q Consensus 137 -----------------------------~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 186 (503)
.+|++|++++|.+....+. +..+++|++|++++|.+.. ++..+
T Consensus 225 ~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l 297 (606)
T 3t6q_A 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGL 297 (606)
T ss_dssp CEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSC
T ss_pred cchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhh
Confidence 1677888888888877766 8999999999999998873 34567
Q ss_pred cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccccc-chhccCCCCCcEEEccCCcccccC--CccccCCC
Q 040833 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI-PSGLRNLVNLEFLHLGGNQFTGRI--PGSIVDLY 263 (503)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ls~n~~~~~~--~~~~~~~~ 263 (503)
..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.... +..+..+++|++|++++|.+.+.. +..+..++
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 376 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred cccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence 7889999999999999977787888886 8999999999887544 445889999999999999998655 67889999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCc-cccCCCCCCEEECcCCcCcccCCcchhccccccceeE
Q 040833 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPS-SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLD 342 (503)
Q Consensus 264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~ 342 (503)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..+..++.+ ++|+
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~ 455 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLN 455 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEE
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEE
Confidence 999999999999988889999999999999999999866554 48899999999999999998888888899999 9999
Q ss_pred ccCCCCccC---CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833 343 LSQNQLNGP---LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419 (503)
Q Consensus 343 l~~n~l~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 419 (503)
+++|.+.+. .+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++| +|++++|+
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 999999862 33568899999999999999998889999999999999999999999999999999999 99999999
Q ss_pred cccccCccCcCCCCCCeeecCCCcCcccCCCCCcc
Q 040833 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVF 454 (503)
Q Consensus 420 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 454 (503)
+++..|..+..+++|+.|++++|++.|.++..++.
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHH
T ss_pred ccccCHhhcccCCCCCEEeCCCCCccccCCcHHHH
Confidence 99888888999999999999999999988754443
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-50 Score=429.28 Aligned_cols=459 Identities=20% Similarity=0.203 Sum_probs=290.2
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcCC-CCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833 2 NELVGKVPGKLGSLSKLRILAMHRNNLS-GEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80 (503)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 80 (503)
|.|++..+.+|+++++|++|++++|... ...|+.|.++++|++|++++|.+.+..|++|.++++|++|++++|.+.+..
T Consensus 34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 113 (844)
T 3j0a_A 34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113 (844)
T ss_dssp CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence 4555555566666666666666665332 223555666666666666666665555666666666666666666555433
Q ss_pred Ccc--ccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCC--CCCCEEecccCcCcccCCC-
Q 040833 81 PFS--IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNA--SNLMRLVIAKNGFSGKVPS- 155 (503)
Q Consensus 81 ~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~- 155 (503)
+.. |.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.+....+.
T Consensus 114 ~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC
T ss_pred ccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc
Confidence 333 55666666666666655533332233346666666666666555555555544 5566666666555543332
Q ss_pred ccCCCC------CcEEEcccccCCCCCCCCcc------------------------------ccccccC--CCCCCEEEC
Q 040833 156 LKILHK------LEWVGISRNHLGNGKKDDLE------------------------------FVNSLVN--ASRLELLQI 197 (503)
Q Consensus 156 l~~l~~------L~~L~l~~n~l~~~~~~~~~------------------------------~~~~l~~--~~~L~~L~l 197 (503)
+..+.+ |+.|++++|.+.......+. ....+.. .++|++|++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred hhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEEC
Confidence 333332 67777766654431111000 0001111 256777777
Q ss_pred cCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccc
Q 040833 198 SDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWG 277 (503)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 277 (503)
++|.+.+..+..+..++ +|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+..
T Consensus 274 s~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp TTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred CCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 77766655566666554 67777777777766666667777777777777777766666667777777777777777766
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc----------------------chhccc
Q 040833 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT----------------------EVIGLS 335 (503)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~----------------------~~~~~~ 335 (503)
..+..|..+++|++|++++|.+... ..+++|++|++++|++. .+|. .+..++
T Consensus 353 ~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 353 IQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp CCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred cChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCC
Confidence 6666666777777777777766532 12444455544444443 2221 123555
Q ss_pred cccceeEccCCCCccCCCc-chhcCCCCCeEeCCCCccc-----ccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833 336 SLSIYLDLSQNQLNGPLPS-NFGILKNLGAIDISENKLS-----GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409 (503)
Q Consensus 336 ~l~~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 409 (503)
.+ +.|++++|.+.+..+. .+..+++|++|++++|.++ +..+..|.++++|+.|+|++|.+++..+..|.++++
T Consensus 427 ~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 427 HL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred cc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 66 7777777777643322 3445677888888888775 233456788899999999999999888888999999
Q ss_pred CCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccC
Q 040833 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 410 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
|+.|+|++|++++..+..+. ++|+.|++++|.+++..| ..+.+++.+++++||+.|+|-
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~--~~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP--DVFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS--CCCSSCCEEEEEEECCCCSSS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh--hHhCCcCEEEecCCCcccccc
Confidence 99999999999877776665 889999999999998777 457899999999999999764
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-48 Score=399.81 Aligned_cols=446 Identities=22% Similarity=0.213 Sum_probs=310.8
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 95 (503)
+++++|++++|.+++..+.+|.++++|++|++++|.+.+..+++|.++++|++|++++|++....+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 34666666666665555555666666666666666665555555666666666666666665555555666666666666
Q ss_pred cCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCC-ccCCCCC----cEEEccc
Q 040833 96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKL----EWVGISR 169 (503)
Q Consensus 96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L----~~L~l~~ 169 (503)
++|.+. .++...+..+++|++|++++|.+++ .+|..+.++++|++|++++|.+....+. +..+++| +.+++++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 666555 3333223335666666666665554 2455566666666666666655544333 4444444 4555555
Q ss_pred ccCCCCCCCCcc------------------ccccccCCC--------------------------------CCCEEECcC
Q 040833 170 NHLGNGKKDDLE------------------FVNSLVNAS--------------------------------RLELLQISD 199 (503)
Q Consensus 170 n~l~~~~~~~~~------------------~~~~l~~~~--------------------------------~L~~L~l~~ 199 (503)
|.+.......+. ....+..++ .++.+++++
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 554432111000 000000001 123333333
Q ss_pred C-cccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833 200 N-NFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE 278 (503)
Q Consensus 200 ~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 278 (503)
+ .+.+..+..+..++ +++++++++|.+. ..+..+..+ +|++|++++|.+. ..|. ..+++|+.|++++|.....
T Consensus 267 ~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp TTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred chhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence 3 44445556666664 8999999998887 466667777 8999999999887 4443 4678899999999987755
Q ss_pred CCccccCCCCCCEEEccCCcCcccC--CccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCC-cc
Q 040833 279 IPSSIGNLTLLITLNFEENMLEGSI--PSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP-SN 355 (503)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~-~~ 355 (503)
.+. ..+++|++|++++|.+.... +..+..+++|++|++++|.+.+. +..+..++.+ ++|++++|.+.+..+ ..
T Consensus 341 ~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L-~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 341 FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQL-EHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTC-CEEECTTSEEESCTTSCT
T ss_pred ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCC-CEEEccCCccccccchhh
Confidence 444 67899999999999987554 56678899999999999998844 4447788888 899999999987655 46
Q ss_pred hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc-ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833 356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ-GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL 434 (503)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 434 (503)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..|..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 888999999999999999888889999999999999999987 4678889999999999999999998888999999999
Q ss_pred CeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833 435 QNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 435 ~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
++|++++|++++..+. ...+++|+.+++++||+.|++.
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999999987663 4567899999999999998754
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-48 Score=402.36 Aligned_cols=439 Identities=21% Similarity=0.192 Sum_probs=376.2
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeee-e
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSG-E 79 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~ 79 (503)
.|.+++..|.+|+++++|++|++++|.+++..|+.|.++++|++|++++|.+....+..|.++++|++|++++|.+.+ .
T Consensus 65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence 478999999999999999999999999998889999999999999999999998887889999999999999999985 5
Q ss_pred CCccccCCCCCcEEEccCCCCcccCchhhhcCCCCC----CEEEccCCcccccCCccccCCCCCCEEecccCcCc-----
Q 040833 80 IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNL----EVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFS----- 150 (503)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L----~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~----- 150 (503)
+|..|+++++|++|++++|.+.+..+..+.. +.+| .++++++|.+++..+..+... +|++|++++|.+.
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~ 222 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK 222 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHH
T ss_pred chHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHH
Confidence 6899999999999999999998555554443 4444 489999999986555555444 8888888887653
Q ss_pred -----------------------------------------------------ccCCCccCCCCCcEEEcccccCCCCCC
Q 040833 151 -----------------------------------------------------GKVPSLKILHKLEWVGISRNHLGNGKK 177 (503)
Q Consensus 151 -----------------------------------------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~ 177 (503)
+..+.+..+++|+.++++++.+...
T Consensus 223 ~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-- 300 (606)
T 3vq2_A 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-- 300 (606)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC--
T ss_pred HHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh--
Confidence 1122256678899999999988642
Q ss_pred CCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc--C
Q 040833 178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR--I 255 (503)
Q Consensus 178 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~ 255 (503)
. .+..+++|++|++++|.+. .+|.. .++ +|++|++++|...... .+..+++|++|++++|.+++. .
T Consensus 301 -----~-~l~~~~~L~~L~l~~n~l~-~lp~~--~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 301 -----E-DVPKHFKWQSLSIIRCQLK-QFPTL--DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp -----C-CCCTTCCCSEEEEESCCCS-SCCCC--CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC
T ss_pred -----h-hccccccCCEEEcccccCc-ccccC--CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch
Confidence 2 6777899999999999994 66743 564 8999999999654333 577899999999999998865 3
Q ss_pred CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGL 334 (503)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 334 (503)
+..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred hhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 7788999999999999999885 55788999999999999999987766 678999999999999999998888889999
Q ss_pred ccccceeEccCCCCcc-CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEE
Q 040833 335 SSLSIYLDLSQNQLNG-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENL 413 (503)
Q Consensus 335 ~~l~~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 413 (503)
+++ ++|++++|.+.+ ..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus 448 ~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 448 TSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp TTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred CCC-CEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 999 999999999987 468889999999999999999998889999999999999999999998889999999999999
Q ss_pred eCCCCccccccCccCcCCC-CCCeeecCCCcCcccCCCCCccCCCC
Q 040833 414 DLSRNNLSGRIPKYLENFP-FLQNLNLSFNHFEGEVPIKGVFSNSS 458 (503)
Q Consensus 414 ~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~l~ 458 (503)
++++|+++ .+|..+..++ +|++|++++|++.+.++..+....++
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 99999999 4555588887 59999999999999888655544443
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-48 Score=401.78 Aligned_cols=443 Identities=20% Similarity=0.205 Sum_probs=380.8
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 80 (503)
.|.+++..+.+|+++++|++|++++|.+++..++.|.++++|++|++++|.+....|++|..+++|++|++++|.+....
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 47888888999999999999999999999888889999999999999999999888899999999999999999999666
Q ss_pred CccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCC----CEEecccCcCcccCCC
Q 040833 81 PFSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL----MRLVIAKNGFSGKVPS 155 (503)
Q Consensus 81 ~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~ 155 (503)
+..|+++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..+..+..+++| +++++++|.+....+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~ 195 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred CccccccccccEEecCCCccceecChhhhcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHH
Confidence 6679999999999999999975 46887775 9999999999999998778888888888 8999999999887776
Q ss_pred ccCCCCCcEEEcccccCCCC-------------------------------CCC---------------------Ccccc
Q 040833 156 LKILHKLEWVGISRNHLGNG-------------------------------KKD---------------------DLEFV 183 (503)
Q Consensus 156 l~~l~~L~~L~l~~n~l~~~-------------------------------~~~---------------------~~~~~ 183 (503)
.....+|+++++++|..... ... .....
T Consensus 196 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~ 275 (570)
T 2z63_A 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275 (570)
T ss_dssp TTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST
T ss_pred HhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch
Confidence 33334788888877632110 000 00122
Q ss_pred ccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCC
Q 040833 184 NSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLY 263 (503)
Q Consensus 184 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~ 263 (503)
..+..+++|++|++++|.+. .+|..+... ++++|++++|.+. ..+. ..+++|++|++++|.+.+..+. ..++
T Consensus 276 ~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~ 347 (570)
T 2z63_A 276 DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLP 347 (570)
T ss_dssp TTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCT
T ss_pred hhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCC
Confidence 44667899999999999988 566666665 8999999999988 3443 4678999999999998765544 6889
Q ss_pred CCCEEEccCCcccccC--CccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhccccccce
Q 040833 264 KLQRLALEGNKFWGEI--PSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIY 340 (503)
Q Consensus 264 ~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~ 340 (503)
+|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..++++ ++
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~ 425 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IY 425 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC-CE
Confidence 9999999999988654 56788999999999999999865554 8899999999999999986655 467788888 99
Q ss_pred eEccCCCCccCCCcchhcCCCCCeEeCCCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLS-GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419 (503)
Q Consensus 341 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 419 (503)
|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..|..+++|++|++++|+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999999999888889999999999999999997 4688899999999999999999998889999999999999999999
Q ss_pred cccccCccCcCCCCCCeeecCCCcCcccCCCCCcc
Q 040833 420 LSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVF 454 (503)
Q Consensus 420 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 454 (503)
+++..+..|..+++|++|++++|++++.+|..+.+
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99888888999999999999999999998866554
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-47 Score=408.99 Aligned_cols=455 Identities=20% Similarity=0.174 Sum_probs=361.5
Q ss_pred CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccc-cCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833 14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV-GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY 92 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (503)
..+++++|++++|.+++..+..|.++++|++|++++|... .+.|.+|.++++|++|+|++|.+....|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4588999999999999888999999999999999999544 444889999999999999999999888999999999999
Q ss_pred EEccCCCCcccCchh-hhcCCCCCCEEEccCCcccccCC-ccccCCCCCCEEecccCcCcccCCC-ccCC--CCCcEEEc
Q 040833 93 ICVPVNQLQGSLPSD-LGFTLPNLEVLNLCRNQFTGPIP-ASISNASNLMRLVIAKNGFSGKVPS-LKIL--HKLEWVGI 167 (503)
Q Consensus 93 L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l--~~L~~L~l 167 (503)
|++++|.+.+.+|.. .+..+++|++|++++|.+++..+ ..|.++++|++|++++|.+....+. +..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999998666654 34569999999999999986654 5799999999999999999876655 6666 89999999
Q ss_pred ccccCCCCCCCCccccccccCCC------CCCEEECcCCcccccCchhHhhc----------------------------
Q 040833 168 SRNHLGNGKKDDLEFVNSLVNAS------RLELLQISDNNFGGMLPEAVGNL---------------------------- 213 (503)
Q Consensus 168 ~~n~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~---------------------------- 213 (503)
++|.+.... ...+..++ .|++|++++|.+.+..+..+...
T Consensus 182 ~~n~l~~~~------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 182 AANSLYSRV------SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CCSBSCCCC------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred CCCcccccc------ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 999987632 22222232 49999999997765544433321
Q ss_pred ---------cccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCcccc
Q 040833 214 ---------STRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG 284 (503)
Q Consensus 214 ---------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 284 (503)
+++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 24799999999999888788899999999999999999988888999999999999999999888888899
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc---------------
Q 040833 285 NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN--------------- 349 (503)
Q Consensus 285 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~--------------- 349 (503)
.+++|++|++++|.+....+..+..+++|++|++++|.+.+ ++. ++++ +.+++++|++.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L-~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSI-PDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSC-SEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CCCc-chhccCCCCcccccccccccceeecc
Confidence 99999999999999987788889999999999999999873 221 3333 45555555544
Q ss_pred -----cCCC-cchhcCCCCCeEeCCCCcccccCCc-cccCCCCCCEEECCCCcCc-----ccCchhccCCCCCCEEeCCC
Q 040833 350 -----GPLP-SNFGILKNLGAIDISENKLSGQIPS-SIGSCTRLEQLVMNGNFFQ-----GNIPSSLSSLRGIENLDLSR 417 (503)
Q Consensus 350 -----~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~ 417 (503)
+... ..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.++ +..+..|.++++|++|+|++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 2211 1234678888888888888754332 4556788888888888876 33345678888999999999
Q ss_pred CccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCc------ccCCCCCCCCCC
Q 040833 418 NNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLC------GGISELHLSTCS 481 (503)
Q Consensus 418 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c------~~~~~~~ls~~~ 481 (503)
|++++..+..|..+++|+.|++++|++++..+. ...++|+.+++++|.... ..++.+++++|+
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNK 558 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC-CCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEEC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChh-hhhccccEEECCCCcCCCCChhHhCCcCEEEecCCC
Confidence 999888888888899999999999998866553 233788888888874332 234555666553
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.8e-47 Score=385.11 Aligned_cols=438 Identities=20% Similarity=0.222 Sum_probs=294.2
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 95 (503)
++|++|++++|.+++..|..|.++++|++|++++|.+.+..|++|..+++|++|++++|++.+..+..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 56777777777777666666777777777777777777666667777777777777777776555555777777777777
Q ss_pred cCCCCcc-cCchhhhcCCCCCCEEEccCCcccccC-CccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccC
Q 040833 96 PVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPI-PASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHL 172 (503)
Q Consensus 96 ~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l 172 (503)
++|.+.+ ..|..+. .+++|++|++++|.+.+.+ +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 106 s~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhhhh-ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 7776653 2233333 4677777777777632233 34666777777777777776665444 66666666666666554
Q ss_pred CCCCCCCccccccccCCCCCCEEECcCCcccccC--chhHhhccccCcEEEeeccccccccc----h-------------
Q 040833 173 GNGKKDDLEFVNSLVNASRLELLQISDNNFGGML--PEAVGNLSTRLRILIVGNNQLFGNIP----S------------- 233 (503)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~------------- 233 (503)
.. .....+..+++|++|++++|.+.+.. +..+....+.++.++++++.+.+..+ .
T Consensus 185 ~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 185 AF------LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp TT------HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cc------cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 32 11111223455666666665554321 11111112345555555544432211 1
Q ss_pred -----------------hccCCCCCcEEEccCCccccc-----CCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCC
Q 040833 234 -----------------GLRNLVNLEFLHLGGNQFTGR-----IPGSIVDLYKLQRLALEGNKFWGEIPSS-IGNLTLLI 290 (503)
Q Consensus 234 -----------------~~~~~~~L~~L~ls~n~~~~~-----~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~L~ 290 (503)
.+..+++++.|++.++.+... .+..+...++|+.|++++|.+. ..|.. +..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCcccc
Confidence 223444555555555443321 1111233467888888888887 44544 46789999
Q ss_pred EEEccCCcCcccCC---ccccCCCCCCEEECcCCcCcccCC--cchhccccccceeEccCCCCccCCCcchhcCCCCCeE
Q 040833 291 TLNFEENMLEGSIP---SSLGKCQNLISLNLSNNNLSGTIP--TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAI 365 (503)
Q Consensus 291 ~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L 365 (503)
+|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..++++ ++|++++|+++ .+|..+..+++|++|
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCCCCc-cCChhhcccccccEE
Confidence 99999999886543 346788999999999999974422 456778888 89999999998 567778888999999
Q ss_pred eCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833 366 DISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
++++|.++ .++..+. ++|++|++++|.+++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|+++
T Consensus 416 ~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 416 NLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCcc-cccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 99999987 4444432 68999999999998542 57899999999999998 4554 467899999999999999
Q ss_pred ccCCC-CCccCCCCceeccCCCCCcccC
Q 040833 446 GEVPI-KGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 446 ~~~~~-~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
+..|. ...+++|+.+++++||+.|+|.
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 87764 5668999999999999999764
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-46 Score=379.23 Aligned_cols=446 Identities=22% Similarity=0.213 Sum_probs=296.2
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC
Q 040833 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP 81 (503)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 81 (503)
|+++ .+|..+. ++|++|++++|.+++..|+.|.++++|++|++++|.+.+..|++|.++++|++|++++|+++ .+|
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred CCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecC
Confidence 4455 3454444 66666666666666555566666666666666666666666666666666666666666666 334
Q ss_pred ccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCC--CEEecccCcC--cccCCC-
Q 040833 82 FSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL--MRLVIAKNGF--SGKVPS- 155 (503)
Q Consensus 82 ~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~- 155 (503)
.. .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+.
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence 33 56666666666666653 24455543 6666666666666653 345555555 6666666665 332222
Q ss_pred ccCCC-CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc-------ccccCchhHhhccccCcEEEeecccc
Q 040833 156 LKILH-KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN-------FGGMLPEAVGNLSTRLRILIVGNNQL 227 (503)
Q Consensus 156 l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~ 227 (503)
+..+. ....+++++|.+... .....+..+++|+.+++++|. +.+..+ .+..++ +++.++++++.+
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l 232 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHF-----ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLNNIET 232 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCC-----CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEEEEEE
T ss_pred ccccccceEEEEeccCcchhh-----hhhhhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccccccc
Confidence 33322 122334444443321 112234556778888888775 443333 455554 788888888877
Q ss_pred ccccchhc---cCCCCCcEEEccCCcccccCCccc-----cCCCCCCEEEccCCcccccCCccccCC---CCCCEEEccC
Q 040833 228 FGNIPSGL---RNLVNLEFLHLGGNQFTGRIPGSI-----VDLYKLQRLALEGNKFWGEIPSSIGNL---TLLITLNFEE 296 (503)
Q Consensus 228 ~~~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~ 296 (503)
.+.....+ ...++|++|++++|.+.+..|..+ ..++.|+.+++++|.+ ......+..+ ++|++|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 64322211 123588888888888887777777 7888888888888887 2222333333 5788888888
Q ss_pred CcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCcc--CCCcchhcCCCCCeEeCCCCcccc
Q 040833 297 NMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNG--PLPSNFGILKNLGAIDISENKLSG 374 (503)
Q Consensus 297 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~ 374 (503)
|.+.... ....+++|++|++++|.+.+..|..+..++.+ ++|++++|.+++ ..+..+..+++|++|++++|.+++
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 8876432 12577888888888888887778788888888 888888888875 344567788888888888888886
Q ss_pred cCCc-cccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CC
Q 040833 375 QIPS-SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KG 452 (503)
Q Consensus 375 ~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 452 (503)
.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++..++. ..
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhc
Confidence 3444 477788888888888888766666553 68888888888888 5666666888888888888888855443 45
Q ss_pred ccCCCCceeccCCCCCccc
Q 040833 453 VFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 453 ~~~~l~~l~~~~n~~~c~~ 471 (503)
.+++|+.+++++||+.|+|
T Consensus 466 ~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCTTCCEEECCSSCBCCCH
T ss_pred cCCcccEEECcCCCCcccC
Confidence 5778888888888888864
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-45 Score=380.84 Aligned_cols=413 Identities=21% Similarity=0.286 Sum_probs=345.2
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccc------c---------------------------CCCccc--
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV------G---------------------------QIPETL-- 60 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~------~---------------------------~~~~~~-- 60 (503)
.+++.|+|+++.+++..|.+|+++++|++|++++|.+. + ..|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57899999999999999999999999999999999652 1 000000
Q ss_pred -----------------cCCCCCCEEEcc--cceeeeeCCccccCCCCCcEEEccCCCCccc-----------------C
Q 040833 61 -----------------SQLKRMLYLLLG--VNKLSGEIPFSIYNLSSLNYICVPVNQLQGS-----------------L 104 (503)
Q Consensus 61 -----------------~~l~~L~~L~L~--~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------~ 104 (503)
.....++.+.+. .|++++ +|..++++++|++|++++|.+.+. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 111223333332 578886 899999999999999999999864 8
Q ss_pred chhhh--cCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-Ccc-cCCC-ccCC------CCCcEEEcccccCC
Q 040833 105 PSDLG--FTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-FSG-KVPS-LKIL------HKLEWVGISRNHLG 173 (503)
Q Consensus 105 ~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~-l~~l------~~L~~L~l~~n~l~ 173 (503)
|..+. . +++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ ..|. +..+ ++|++|++++|.++
T Consensus 240 p~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 240 TEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred chhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 88877 5 9999999999999999999999999999999999998 776 4443 5554 89999999999887
Q ss_pred CCCCCCccccc--cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC-CcEEEccCCc
Q 040833 174 NGKKDDLEFVN--SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN-LEFLHLGGNQ 250 (503)
Q Consensus 174 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~ls~n~ 250 (503)
. ++. .+..+++|++|++++|.+.+.+| .+..++ +|++|++++|.+. .+|..+..+++ |++|++++|.
T Consensus 319 ~-------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 319 T-------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp S-------CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred c-------cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 3 344 67788999999999999997788 777775 8999999999998 77778999999 9999999999
Q ss_pred ccccCCccccCCC--CCCEEEccCCcccccCCcccc-------CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC
Q 040833 251 FTGRIPGSIVDLY--KLQRLALEGNKFWGEIPSSIG-------NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321 (503)
Q Consensus 251 ~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 321 (503)
++ .+|..+.... +|+.|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 99 6777776654 899999999999988888887 7889999999999999665556777999999999999
Q ss_pred cCcccCCcchhccc--------cccceeEccCCCCccCCCcchh--cCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833 322 NLSGTIPTEVIGLS--------SLSIYLDLSQNQLNGPLPSNFG--ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391 (503)
Q Consensus 322 ~~~~~~~~~~~~~~--------~l~~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 391 (503)
.+. .+|....... .+ +.|++++|.++ .+|..+. .+++|++|++++|.+++ +|..+..+++|++|++
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 998 6665544433 66 99999999999 6677776 89999999999999996 8888999999999999
Q ss_pred ------CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833 392 ------NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448 (503)
Q Consensus 392 ------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 448 (503)
++|.+.+.+|..+..+++|++|+|++|++. .+|..+. ++|+.|++++|++.+..
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 567788899999999999999999999995 5666554 89999999999988654
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-45 Score=369.68 Aligned_cols=437 Identities=21% Similarity=0.241 Sum_probs=357.7
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeee-e
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSG-E 79 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-~ 79 (503)
+|.|++..|.+|+++++|++|++++|.+++..|+.|.++++|++|++++|.+.. +|.. .+++|++|++++|.+.+ .
T Consensus 30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCC
T ss_pred CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCcccccc
Confidence 478888888999999999999999999998889999999999999999999994 5554 89999999999999986 4
Q ss_pred CCccccCCCCCcEEEccCCCCcccCchhhhcCCCCC--CEEEccCCcc--cccCCccccCCC-CCCEEecccCcCcccCC
Q 040833 80 IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNL--EVLNLCRNQF--TGPIPASISNAS-NLMRLVIAKNGFSGKVP 154 (503)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~ 154 (503)
.|..|+++++|++|++++|.+.+ ..+. .+++| ++|++++|.+ .+..|..+..+. +..++++++|.+.+..+
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred chhhhccCCcceEEEecCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 67899999999999999999874 2333 47788 9999999999 767777777665 34467788888776555
Q ss_pred C--ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhh--ccccCcEEEeeccccccc
Q 040833 155 S--LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGN--LSTRLRILIVGNNQLFGN 230 (503)
Q Consensus 155 ~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 230 (503)
. +..+++|+.+++++|...............+..+++|+.|+++++.+.+.....+.. ..+++++|++++|.+.+.
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 4 788999999999998621100000022336778899999999999877543322221 113899999999999877
Q ss_pred cchhc-----cCCCCCcEEEccCCcccccCC-ccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcc
Q 040833 231 IPSGL-----RNLVNLEFLHLGGNQFTGRIP-GSIVDL---YKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEG 301 (503)
Q Consensus 231 ~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 301 (503)
.|..+ ..+++|+.+++++|.+ ..| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.+.+
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCT
T ss_pred cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccCh
Confidence 88877 8899999999999988 234 344333 67999999999976432 23688999999999999998
Q ss_pred cCCccccCCCCCCEEECcCCcCcc--cCCcchhccccccceeEccCCCCccCCCc-chhcCCCCCeEeCCCCcccccCCc
Q 040833 302 SIPSSLGKCQNLISLNLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQLNGPLPS-NFGILKNLGAIDISENKLSGQIPS 378 (503)
Q Consensus 302 ~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~ 378 (503)
..+..+..+++|++|++++|++.+ ..|..+..++.+ ++|++++|.+.+.++. .+..+++|++|++++|.+++..+.
T Consensus 339 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence 888899999999999999999985 455778888998 9999999999974544 478899999999999999877776
Q ss_pred cccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCC
Q 040833 379 SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452 (503)
Q Consensus 379 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 452 (503)
.+. ++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|++.|.++..+
T Consensus 418 ~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 418 CLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp SCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred hhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchH
Confidence 654 79999999999999 677777799999999999999996555559999999999999999999877433
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-44 Score=368.04 Aligned_cols=447 Identities=21% Similarity=0.199 Sum_probs=336.2
Q ss_pred CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833 15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC 94 (503)
Q Consensus 15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 94 (503)
|+...+.+.+++.++ .+|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|++.+..|.+|.++++|++|+
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 455556788899998 6776664 8999999999999988899999999999999999999988889999999999999
Q ss_pred ccCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcC-cccCC-CccCCCCCcEEEccccc
Q 040833 95 VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGF-SGKVP-SLKILHKLEWVGISRNH 171 (503)
Q Consensus 95 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~-~~~~~-~l~~l~~L~~L~l~~n~ 171 (503)
+++|.+. .++...+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+ ....+ .+..+++|++|++++|.
T Consensus 81 Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999998 5555544469999999999999985 3567899999999999999984 44443 38999999999999999
Q ss_pred CCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccccc---chhccCCCCCcEEEccC
Q 040833 172 LGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNI---PSGLRNLVNLEFLHLGG 248 (503)
Q Consensus 172 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~ls~ 248 (503)
+.. ..+..+..+++|++|+++++.+. ..+..+....++|++|++++|.+.+.. ......+++|+.|++++
T Consensus 160 l~~------~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 160 LRN------YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp CCE------ECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred ccc------cChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 876 45567778899999999999886 445554443359999999999988642 12234578899999998
Q ss_pred CcccccC----CccccCCCCCCEEEccCCcccccCC------cc-----------------------------ccCCCCC
Q 040833 249 NQFTGRI----PGSIVDLYKLQRLALEGNKFWGEIP------SS-----------------------------IGNLTLL 289 (503)
Q Consensus 249 n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~------~~-----------------------------~~~~~~L 289 (503)
|.+.+.. +..+..++.|+.+++++|.+.+... .. +...++|
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 8776422 2233455667777777666543210 01 1223567
Q ss_pred CEEEccCCcCcccCCccc-cCCCCCCEEECcCCcCcccCC---cchhccccccceeEccCCCCccCCC--cchhcCCCCC
Q 040833 290 ITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIP---TEVIGLSSLSIYLDLSQNQLNGPLP--SNFGILKNLG 363 (503)
Q Consensus 290 ~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~l~~~L~l~~n~l~~~~~--~~~~~~~~L~ 363 (503)
++|++++|.+. ..|..+ ..+++|++|++++|.+.+..+ ..+..++.+ ++|++++|.+++..+ ..+..+++|+
T Consensus 313 ~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL-QTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp CEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTC-CEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred eEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccC-cEEEccCCcccccccchhhhhcCCCCC
Confidence 77777777766 334333 567888888888888876553 235566777 888888888875422 3477788888
Q ss_pred eEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCc
Q 040833 364 AIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNH 443 (503)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 443 (503)
+|++++|.++ .+|..+..+++|++|++++|.+++ ++..+ .++|++|++++|++++. ...+++|++|++++|+
T Consensus 391 ~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNK 462 (549)
T ss_dssp EEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSC
T ss_pred EEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCc
Confidence 8888888887 567777778888888888888773 34333 25788888888888753 2567889999999998
Q ss_pred CcccCCCCCccCCCCceeccCCCCC---------cccCCCCCCCCCCCC
Q 040833 444 FEGEVPIKGVFSNSSAISIDGNDNL---------CGGISELHLSTCSIK 483 (503)
Q Consensus 444 l~~~~~~~~~~~~l~~l~~~~n~~~---------c~~~~~~~ls~~~~~ 483 (503)
++ ..|....+++|+.+++++|... +..++.+++++|++.
T Consensus 463 l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 463 LK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CS-SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cC-cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 88 4454566788888888887432 334567788888753
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-45 Score=374.81 Aligned_cols=406 Identities=20% Similarity=0.247 Sum_probs=338.9
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCC------C---------------------------CCCcccC----------
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLS------G---------------------------EIPSSFG---------- 37 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~------~---------------------------~~~~~~~---------- 37 (503)
.|.++|.+|.+|+++++|++|+|++|.+. + ..|..+.
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 37889999999999999999999999762 0 0011111
Q ss_pred ---------CCCCCCEEECC--CCccccCCCccccCCCCCCEEEcccceeeee-----------------CCcccc--CC
Q 040833 38 ---------NLSSLEALSAS--ANQFVGQIPETLSQLKRMLYLLLGVNKLSGE-----------------IPFSIY--NL 87 (503)
Q Consensus 38 ---------~l~~L~~L~l~--~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~~~~~~--~l 87 (503)
....++.+.+. .|.+++ +|..|.++++|++|++++|.+++. +|..++ ++
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 11122222222 577887 788999999999999999999864 899988 99
Q ss_pred CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCc-ccc-cCCccccCC------CCCCEEecccCcCcccCC--Ccc
Q 040833 88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ-FTG-PIPASISNA------SNLMRLVIAKNGFSGKVP--SLK 157 (503)
Q Consensus 88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~------~~L~~L~l~~n~~~~~~~--~l~ 157 (503)
++|++|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..+..+ ++|++|++++|.+...+. .+.
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhc
Confidence 99999999999998889988775 9999999999998 887 788877765 999999999999995555 489
Q ss_pred CCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhcccc-CcEEEeeccccccccchhcc
Q 040833 158 ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTR-LRILIVGNNQLFGNIPSGLR 236 (503)
Q Consensus 158 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~ 236 (503)
.+++|++|++++|.+.+ .++ .+..+++|++|++++|.+. .+|..+..++ + |++|++++|.+. .+|..+.
T Consensus 328 ~l~~L~~L~L~~N~l~g------~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEG------KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFT-EQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp TCTTCCEEECCSCCCEE------ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEEC-TTCCEEECCSSCCS-SCCSCCC
T ss_pred cCCCCCEEeCcCCcCcc------chh-hhCCCCCCCEEECCCCccc-cccHhhhhhc-ccCcEEEccCCcCc-ccchhhh
Confidence 99999999999998874 333 6677789999999999998 7788888886 6 999999999998 6677776
Q ss_pred CCC--CCcEEEccCCcccccCCcccc-------CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccc
Q 040833 237 NLV--NLEFLHLGGNQFTGRIPGSIV-------DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSL 307 (503)
Q Consensus 237 ~~~--~L~~L~ls~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 307 (503)
... +|++|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.+.......+
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 654 899999999999988888887 78899999999999996655667789999999999999995544444
Q ss_pred cCC-------CCCCEEECcCCcCcccCCcchh--ccccccceeEccCCCCccCCCcchhcCCCCCeEeC------CCCcc
Q 040833 308 GKC-------QNLISLNLSNNNLSGTIPTEVI--GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDI------SENKL 372 (503)
Q Consensus 308 ~~~-------~~L~~L~l~~n~~~~~~~~~~~--~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l------~~n~l 372 (503)
... ++|++|++++|.++ .+|..+. .++.+ +.|++++|.+++ +|..+..+++|++|++ ++|.+
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L-~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL-VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc-CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 433 39999999999999 7888887 88888 999999999996 7888999999999999 56778
Q ss_pred cccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc
Q 040833 373 SGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI 424 (503)
Q Consensus 373 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 424 (503)
.+.+|..+..+++|++|++++|.++ .+|..+. ++|++|++++|++....
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred cccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 8889999999999999999999995 6777665 89999999999987544
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.3e-43 Score=362.33 Aligned_cols=457 Identities=21% Similarity=0.189 Sum_probs=319.6
Q ss_pred CCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccC
Q 040833 7 KVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYN 86 (503)
Q Consensus 7 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 86 (503)
.+|..+. +++++|+|++|.|+...+.+|.++++|++|++++|.|..+.+++|.++++|++|+|++|+++...+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3454432 47899999999998777788999999999999999998888888999999999999999988766678889
Q ss_pred CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCC-ccCCCC---
Q 040833 87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPS-LKILHK--- 161 (503)
Q Consensus 87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~--- 161 (503)
+++|++|++++|.+. .++...+..+++|++|++++|.++. ..|..+..+++|++|++++|.+.+..+. +..+.+
T Consensus 123 L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 999999999999887 6666555568999999999998865 3567788889999999999888765543 322222
Q ss_pred -CcEEEcccccCCCCCCCCcc------------------ccccccCCCCCCEEEC-------------------------
Q 040833 162 -LEWVGISRNHLGNGKKDDLE------------------FVNSLVNASRLELLQI------------------------- 197 (503)
Q Consensus 162 -L~~L~l~~n~l~~~~~~~~~------------------~~~~l~~~~~L~~L~l------------------------- 197 (503)
...++++.|.+.......+. ....+..+..++...+
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 23445555444321111000 0000111111221111
Q ss_pred -----cCCccc---ccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC--------------
Q 040833 198 -----SDNNFG---GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI-------------- 255 (503)
Q Consensus 198 -----~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~-------------- 255 (503)
..+... ......+... ..++.+.+.++.+.... .+.....++.|++.++.+.+..
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCL-TNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGG-TTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred hhhhhhhhhhcccccchhhhhhhh-ccccccccccccccccc--ccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence 110000 0001111111 24444554444433221 1233334444444444333211
Q ss_pred -----CccccCCCCCCEEEccCCccccc--CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC
Q 040833 256 -----PGSIVDLYKLQRLALEGNKFWGE--IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 328 (503)
Q Consensus 256 -----~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 328 (503)
+.....++.|+.+++++|.+... .+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+
T Consensus 359 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 359 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc
Confidence 12234567788888888876532 34445567788888888877663 44557788999999999887664444
Q ss_pred -cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhccC
Q 040833 329 -TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLS-GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS 406 (503)
Q Consensus 329 -~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 406 (503)
..+..+..+ +.++++.|.+....+..+..++.++.|++++|.+. ...|..|..+++|++|+|++|.+++..|..|.+
T Consensus 438 ~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 438 FSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp SCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 445666777 89999999999888888999999999999999754 457888999999999999999999888999999
Q ss_pred CCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCcc-CCCCceeccCCCCCccc
Q 040833 407 LRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVF-SNSSAISIDGNDNLCGG 471 (503)
Q Consensus 407 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~-~~l~~l~~~~n~~~c~~ 471 (503)
+++|++|+|++|++++..+..|..+++|++|++++|++++..|. ...+ ++|+.+++++|||.|+|
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999988888999999999999999999987763 2333 68999999999999976
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-44 Score=374.91 Aligned_cols=433 Identities=20% Similarity=0.226 Sum_probs=346.6
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEEC-CCCccccCCCcc-----------------------------------
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSA-SANQFVGQIPET----------------------------------- 59 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l-~~n~i~~~~~~~----------------------------------- 59 (503)
..++.|+|+++.+.+.+|..|+++++|++|++ ++|.+.+..+-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 888776542211
Q ss_pred ----------------ccCCCCCCEEEccc--ceeeeeCCccccCCCCCcEEEccCCCCcc-----------------cC
Q 040833 60 ----------------LSQLKRMLYLLLGV--NKLSGEIPFSIYNLSSLNYICVPVNQLQG-----------------SL 104 (503)
Q Consensus 60 ----------------~~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-----------------~~ 104 (503)
......++.+.+.. |++.+ +|..|+++++|++|++++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01122334444443 77886 88899999999999999999986 28
Q ss_pred chhhh-cCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-Ccc-cCCC-c-------cCCCCCcEEEcccccCC
Q 040833 105 PSDLG-FTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-FSG-KVPS-L-------KILHKLEWVGISRNHLG 173 (503)
Q Consensus 105 ~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~-l-------~~l~~L~~L~l~~n~l~ 173 (503)
|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +.+ ..|. + ..+++|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88874 349999999999999988999999999999999999998 765 3332 3 34569999999999887
Q ss_pred CCCCCCccccc--cccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC-CcEEEccCCc
Q 040833 174 NGKKDDLEFVN--SLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN-LEFLHLGGNQ 250 (503)
Q Consensus 174 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~ls~n~ 250 (503)
.++. .+..+++|++|++++|.+. .+| .+..++ +|+.|++++|.+. .+|..+..+++ |++|++++|.
T Consensus 562 -------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 562 -------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp -------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred -------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 3344 6788899999999999998 667 677775 8999999999998 77778888998 9999999999
Q ss_pred ccccCCccccCCCC--CCEEEccCCcccccCCccc---c--CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833 251 FTGRIPGSIVDLYK--LQRLALEGNKFWGEIPSSI---G--NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323 (503)
Q Consensus 251 ~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (503)
+. .+|..+...+. |+.|++++|.+.+..|... . .+++|+.|++++|.+.......+..+++|++|++++|.+
T Consensus 631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 98 66777766654 9999999999987655322 2 345899999999999954444456889999999999999
Q ss_pred cccCCcchhccc--------cccceeEccCCCCccCCCcchh--cCCCCCeEeCCCCcccccCCccccCCCCCCEEECCC
Q 040833 324 SGTIPTEVIGLS--------SLSIYLDLSQNQLNGPLPSNFG--ILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG 393 (503)
Q Consensus 324 ~~~~~~~~~~~~--------~l~~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 393 (503)
. .+|..+.... .+ +.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|+|++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred C-ccChHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 8 6666554432 66 89999999999 6777776 89999999999999996 788899999999999976
Q ss_pred ------CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCC-CccCCCCceeccCCC
Q 040833 394 ------NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK-GVFSNSSAISIDGND 466 (503)
Q Consensus 394 ------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~l~~l~~~~n~ 466 (503)
|.+.+.+|..+..+++|+.|+|++|++. .+|..+. ++|+.|++++|++....+.. .....+....+.+|+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 7788899999999999999999999995 6666654 69999999999998654411 111233445555665
Q ss_pred CC
Q 040833 467 NL 468 (503)
Q Consensus 467 ~~ 468 (503)
..
T Consensus 863 ~~ 864 (876)
T 4ecn_A 863 TQ 864 (876)
T ss_dssp TS
T ss_pred cc
Confidence 44
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.1e-43 Score=358.56 Aligned_cols=439 Identities=19% Similarity=0.173 Sum_probs=292.4
Q ss_pred CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEE
Q 040833 14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYI 93 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 93 (503)
.+...++++++++.++ .+|..+. ++|++|++++|.+.+..+.+|..+++|++|++++|++++..|..|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3455588899988888 4676654 788999999998887777888889999999999998887778888889999999
Q ss_pred EccCCCCcccCchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEecccCcCcccCCCccCCCCC--cEEEcccc
Q 040833 94 CVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTG-PIPASISNASNLMRLVIAKNGFSGKVPSLKILHKL--EWVGISRN 170 (503)
Q Consensus 94 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L--~~L~l~~n 170 (503)
++++|.+. .+|.. .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.. ..+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecc
Confidence 99998887 77766 48889999999988885 345788888999999998888765 234555555 88888888
Q ss_pred cC--CCCCCCCccc--------------------cccccCCCCCCEEECcCCccc----ccCchhHhhccccCcEEEeec
Q 040833 171 HL--GNGKKDDLEF--------------------VNSLVNASRLELLQISDNNFG----GMLPEAVGNLSTRLRILIVGN 224 (503)
Q Consensus 171 ~l--~~~~~~~~~~--------------------~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~ 224 (503)
.+ .......+.. ...+..+++|+.+++++|... ......+...+ .++.+.+.+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~-~L~~L~L~~ 258 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP-TLLNVTLQH 258 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS-SCEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC-cceEEEecC
Confidence 77 4322211111 012233455666666665311 01112233333 566666665
Q ss_pred ccccccc----chhccCCCCCcEEEccCCcccccCCccc-----cCCCCCCEEEccCCcccccCC-cccc---CCCCCCE
Q 040833 225 NQLFGNI----PSGLRNLVNLEFLHLGGNQFTGRIPGSI-----VDLYKLQRLALEGNKFWGEIP-SSIG---NLTLLIT 291 (503)
Q Consensus 225 ~~~~~~~----~~~~~~~~~L~~L~ls~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~---~~~~L~~ 291 (503)
+.+.+.. +.. ...++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..| ..+. ..++|++
T Consensus 259 ~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 259 IETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred CcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence 5544311 111 123478888888888776666655 4445555555555544 122 1111 1256777
Q ss_pred EEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCC--CcchhcCCCCCeEeCCC
Q 040833 292 LNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPL--PSNFGILKNLGAIDISE 369 (503)
Q Consensus 292 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~ 369 (503)
|++++|.+.... ....+++|++|++++|.+.+..|..+..++++ +.|++++|.+++.. +..+..+++|++|++++
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 777777765322 12567778888888887776677777777777 77888888777532 34566777888888888
Q ss_pred CcccccCC-ccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833 370 NKLSGQIP-SSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448 (503)
Q Consensus 370 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 448 (503)
|.+++.+| ..+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++..+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCC
Confidence 87776333 3567777888888888877755544433 57888888888777 44544457778888888888877544
Q ss_pred CC-CCccCCCCceeccCCCCCccc
Q 040833 449 PI-KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 449 ~~-~~~~~~l~~l~~~~n~~~c~~ 471 (503)
+. ...+++|+.+++++||+.|+|
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTSTTTCTTCCCEECCSCCBCCCH
T ss_pred HHHHhcCCCCCEEEecCCCcCCCc
Confidence 43 455677777888888887765
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.2e-43 Score=366.13 Aligned_cols=427 Identities=18% Similarity=0.188 Sum_probs=346.2
Q ss_pred CCccccCCCcccCCCCCCcEEEc-ccCcCCCCCCcc--------------------------------------------
Q 040833 1 FNELVGKVPGKLGSLSKLRILAM-HRNNLSGEIPSS-------------------------------------------- 35 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l-~~n~i~~~~~~~-------------------------------------------- 35 (503)
.|.++|.+|.+|+++++|++|+| ++|.+.+..|-.
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 47899999999999999999999 888665431111
Q ss_pred -------cCCCCCCCEEECC--CCccccCCCccccCCCCCCEEEcccceeee-----------------eCCcccc--CC
Q 040833 36 -------FGNLSSLEALSAS--ANQFVGQIPETLSQLKRMLYLLLGVNKLSG-----------------EIPFSIY--NL 87 (503)
Q Consensus 36 -------~~~l~~L~~L~l~--~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l 87 (503)
......++.+.+. .|.+.+ +|..|.++++|++|+|++|.+++ .+|..++ ++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 0112233444443 377887 78899999999999999999996 3888877 99
Q ss_pred CCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCc-ccc-cCCccccC-------CCCCCEEecccCcCcccCC--Cc
Q 040833 88 SSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ-FTG-PIPASISN-------ASNLMRLVIAKNGFSGKVP--SL 156 (503)
Q Consensus 88 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~-------~~~L~~L~l~~n~~~~~~~--~l 156 (503)
++|++|++++|.+.+.+|..+.. +++|++|++++|+ +++ .+|..+.. +++|++|++++|.+...+. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 99999999999988899988776 9999999999998 887 67765554 4599999999999995555 48
Q ss_pred cCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhcc
Q 040833 157 KILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLR 236 (503)
Q Consensus 157 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 236 (503)
..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+. .+|..+..++.+|++|++++|.+. .+|..+.
T Consensus 570 ~~L~~L~~L~Ls~N~l~~-------lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRH-------LE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp TTCTTCCEEECTTSCCCB-------CC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred hcCCCCCEEECCCCCccc-------ch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 999999999999998872 22 6778899999999999998 778888888623999999999998 6677776
Q ss_pred CCC--CCcEEEccCCcccccCCccc---c--CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC
Q 040833 237 NLV--NLEFLHLGGNQFTGRIPGSI---V--DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK 309 (503)
Q Consensus 237 ~~~--~L~~L~ls~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 309 (503)
..+ +|+.|++++|.+.+..|... . ..++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 665 49999999999987554322 2 3458999999999999544445668999999999999998444444432
Q ss_pred -------CCCCCEEECcCCcCcccCCcchh--ccccccceeEccCCCCccCCCcchhcCCCCCeEeCCC------Ccccc
Q 040833 310 -------CQNLISLNLSNNNLSGTIPTEVI--GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE------NKLSG 374 (503)
Q Consensus 310 -------~~~L~~L~l~~n~~~~~~~~~~~--~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~------n~l~~ 374 (503)
+++|++|++++|++. .+|..+. .++++ +.|++++|.+.+ +|..+..+++|+.|++++ |.+.+
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~ 796 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR 796 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc
Confidence 349999999999998 7888887 88888 999999999996 688888999999999976 77888
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833 375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
.+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|++.
T Consensus 797 ~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 8999999999999999999999 47777765 69999999999998777666655555666777777655
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-42 Score=351.96 Aligned_cols=431 Identities=19% Similarity=0.236 Sum_probs=334.5
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCC
Q 040833 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIP 81 (503)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 81 (503)
|+++. +|..+. +++++|++++|.+++..++.|.++++|++|++++|.+.+..|++|.++++|++|++++|+++ .+|
T Consensus 41 ~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 41 RNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp SCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 56665 666554 89999999999999888889999999999999999999988999999999999999999998 566
Q ss_pred ccccCCCCCcEEEccCCCCcc-cCchhhhcCCCCCCEEEccCCcccccCCccccCCCCC--CEEecccCcC--cccCCC-
Q 040833 82 FSIYNLSSLNYICVPVNQLQG-SLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL--MRLVIAKNGF--SGKVPS- 155 (503)
Q Consensus 82 ~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~- 155 (503)
.. .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.++.. .+..+++| ++|++++|.+ .+..+.
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCccc
Confidence 55 89999999999999984 23456654 99999999999998853 45555555 9999999988 443332
Q ss_pred cc--------------------------CCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchh
Q 040833 156 LK--------------------------ILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEA 209 (503)
Q Consensus 156 l~--------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 209 (503)
+. .+++|+.+++++|...... .......+...++|+.++++++.+.+.....
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~ 268 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR--LMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH--HHHHHHHHHSCSSCEEEEEEEEEECHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch--HHHHHHHHhccCcceEEEecCCcCcHHHHHH
Confidence 22 3456777777766421100 0022345667788999999888765432111
Q ss_pred H---hhccccCcEEEeeccccccccchhc-----cCCCCCcEEEccCCcccccCC-cccc---CCCCCCEEEccCCcccc
Q 040833 210 V---GNLSTRLRILIVGNNQLFGNIPSGL-----RNLVNLEFLHLGGNQFTGRIP-GSIV---DLYKLQRLALEGNKFWG 277 (503)
Q Consensus 210 ~---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~---~~~~L~~L~l~~n~~~~ 277 (503)
+ ... +++++|++++|.+.+..|..+ ..++.|+.++++.+.+ ..| ..+. ...+|+.|++++|.+..
T Consensus 269 ~~~~~~~-~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 269 LFQFFWP-RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHTT-SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHhhhc-ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc
Confidence 1 112 389999999999987777766 5555555555555554 222 1111 23579999999998763
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc--cCCcchhccccccceeEccCCCCccCCC-c
Q 040833 278 EIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG--TIPTEVIGLSSLSIYLDLSQNQLNGPLP-S 354 (503)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~l~~~L~l~~n~l~~~~~-~ 354 (503)
.. ....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++.+ ++|++++|.+++..+ .
T Consensus 346 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 346 MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSC
T ss_pred cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChh
Confidence 32 22678999999999999998888899999999999999999985 234567888888 999999999997344 4
Q ss_pred chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCC
Q 040833 355 NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFL 434 (503)
Q Consensus 355 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 434 (503)
.+..+++|++|++++|.+++..+..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++...+..+..+++|
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 499 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL 499 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC
Confidence 588899999999999999877666554 79999999999998 567666699999999999999995555559999999
Q ss_pred CeeecCCCcCcccCCCCCc
Q 040833 435 QNLNLSFNHFEGEVPIKGV 453 (503)
Q Consensus 435 ~~L~l~~n~l~~~~~~~~~ 453 (503)
+.|++++|++.|.++..+.
T Consensus 500 ~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 500 QYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCEECCSCCBCCCHHHHHH
T ss_pred CEEEecCCCcCCCcchHHH
Confidence 9999999999998875443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-40 Score=332.32 Aligned_cols=392 Identities=19% Similarity=0.210 Sum_probs=261.3
Q ss_pred cEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceee-eeCCccccCCCCCcEEEccC
Q 040833 19 RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLS-GEIPFSIYNLSSLNYICVPV 97 (503)
Q Consensus 19 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~l~~ 97 (503)
+.++.+++.++ ..|. +. ++|++|++++|.+.+..|..|.++++|++|++++|.+. ...+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777777 5555 33 67888888888888777778888888888888888775 34456677888888888888
Q ss_pred CCCcccCchhhhcCCCCCCEEEccCCcccccCCcc--ccCCCCCCEEecccCcCcccCCC--ccCCCCCcEEEcccccCC
Q 040833 98 NQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPAS--ISNASNLMRLVIAKNGFSGKVPS--LKILHKLEWVGISRNHLG 173 (503)
Q Consensus 98 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~--l~~l~~L~~L~l~~n~l~ 173 (503)
|.+.+..|..+. .+++|++|++++|.+++..+.. +..+++|++|++++|.+.+..+. +..+++|++|++++|.+.
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 877744455554 3778888888888776533333 66777777777777777665443 556666666666666555
Q ss_pred CCCCCCccccccccCC--CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcc
Q 040833 174 NGKKDDLEFVNSLVNA--SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQF 251 (503)
Q Consensus 174 ~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~ 251 (503)
..... .+..+ .+++.+++++|.+.+..+..+.. .....+..+++|++|++++|.+
T Consensus 168 ~~~~~------~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 168 SICEE------DLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp CCCTT------TSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCC
T ss_pred ccChh------hhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEecCCCcc
Confidence 42211 11111 34455555555444322211110 0001122345566666666665
Q ss_pred cccCCccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc--CCCCCCEEECcCCcCccc
Q 040833 252 TGRIPGSIVDL---YKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG--KCQNLISLNLSNNNLSGT 326 (503)
Q Consensus 252 ~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~ 326 (503)
.+..+..+... .+++.|++++|...+.... .+.+.......+. ..++|++|++++|.+.+.
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred cccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCcccccc
Confidence 54444433222 5566666666654322110 0111111111122 235677777777777766
Q ss_pred CCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccC
Q 040833 327 IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS 406 (503)
Q Consensus 327 ~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 406 (503)
.+..+..++.+ ++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.+
T Consensus 291 ~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 291 LKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp CTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred chhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 66677777777 77777777777677777888899999999999998888888999999999999999999888889999
Q ss_pred CCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCc
Q 040833 407 LRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGV 453 (503)
Q Consensus 407 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 453 (503)
+++|++|++++|++++..+..+..+++|++|++++|++++.+|....
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 99999999999999987777889999999999999999998885433
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-39 Score=322.57 Aligned_cols=373 Identities=18% Similarity=0.181 Sum_probs=267.8
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccc-cCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFV-GQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC 94 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 94 (503)
++|++|++++|.+++..|..|.++++|++|++++|.+. ...+..|..+++|++|++++|.+....|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999986 44577899999999999999999988899999999999999
Q ss_pred ccCCCCcccCchh-hhcCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEecccCcCcccCCC-ccCC--CCCcEEEccc
Q 040833 95 VPVNQLQGSLPSD-LGFTLPNLEVLNLCRNQFTGPIPAS-ISNASNLMRLVIAKNGFSGKVPS-LKIL--HKLEWVGISR 169 (503)
Q Consensus 95 l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~-l~~l--~~L~~L~l~~ 169 (503)
+++|.+.+..+.. .+..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+. +..+ .+|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998554543 3445999999999999999777776 88999999999999999877665 5554 6899999999
Q ss_pred ccCCCCCCCCcc--ccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEcc
Q 040833 170 NHLGNGKKDDLE--FVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLG 247 (503)
Q Consensus 170 n~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 247 (503)
|.+.......+. ....+..+++|++|++++|.+.+..+..+.... ..++|+.|+++
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~----------------------~~~~L~~L~l~ 247 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI----------------------AGTKIQSLILS 247 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT----------------------TTCCEEEEECT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc----------------------cccceeeEeec
Confidence 998764322111 112233446677777777776655555544331 11344444444
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833 248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG--NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG 325 (503)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 325 (503)
+|...+... ..+.+.+..+..+. ..++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 248 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 248 NSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 443331100 00001101111111 12456666666666655555555666666666666666665
Q ss_pred cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS 405 (503)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 405 (503)
..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|.
T Consensus 314 ~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 314 IDDNAFWGLTHL-LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp ECTTTTTTCTTC-CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cChhHhcCcccC-CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 555555556665 6666666666655566677788888888888888877788888888888888888888876667778
Q ss_pred CCCCCCEEeCCCCccccccC
Q 040833 406 SLRGIENLDLSRNNLSGRIP 425 (503)
Q Consensus 406 ~l~~L~~L~L~~n~l~~~~~ 425 (503)
.+++|++|++++|+++...|
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 88888888888888875544
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.3e-39 Score=334.69 Aligned_cols=448 Identities=24% Similarity=0.241 Sum_probs=343.4
Q ss_pred CCccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeC
Q 040833 1 FNELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEI 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 80 (503)
+|.|++..+.+|+++++|++|+|++|.|++..+++|.++++|++|++++|++....+++|.++++|++|++++|++++..
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 58899999999999999999999999999888889999999999999999999888889999999999999999999777
Q ss_pred CccccCCCCCcEEEccCCCCccc-CchhhhcCCCCCCEEEccCCcccccCCccccCCCCC----CEEecccCcCcccCCC
Q 040833 81 PFSIYNLSSLNYICVPVNQLQGS-LPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNL----MRLVIAKNGFSGKVPS 155 (503)
Q Consensus 81 ~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~ 155 (503)
+..|+++++|++|++++|.+.+. .|..+. .+++|++|++++|.+++..+..+..+.++ ..++++.|.+....+.
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcc
Confidence 77899999999999999998743 455555 49999999999999997777777654433 3566777766544433
Q ss_pred ccCCCCCcEEEcccccCC-------------------------C------CCCCCc---------------------ccc
Q 040833 156 LKILHKLEWVGISRNHLG-------------------------N------GKKDDL---------------------EFV 183 (503)
Q Consensus 156 l~~l~~L~~L~l~~n~l~-------------------------~------~~~~~~---------------------~~~ 183 (503)
......++.+++.+|... . .....+ ...
T Consensus 220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 299 (635)
T 4g8a_A 220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII 299 (635)
T ss_dssp TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence 222222233332222100 0 000000 001
Q ss_pred ccccCCCCCCEEECc----------------------CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCC
Q 040833 184 NSLVNASRLELLQIS----------------------DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNL 241 (503)
Q Consensus 184 ~~l~~~~~L~~L~l~----------------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 241 (503)
..+....+++.+.+. ++.+....... . ..++.+.+..+..... .....+++|
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---l-~~L~~l~l~~n~~~~~--~~~~~l~~L 373 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK---L-KSLKRLTFTSNKGGNA--FSEVDLPSL 373 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB---C-TTCCEEEEESCCSCCB--CCCCBCTTC
T ss_pred hhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc---c-hhhhhcccccccCCCC--ccccccccc
Confidence 112223344444444 44433222111 1 2445555555443321 123467899
Q ss_pred cEEEccCCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccC-CccccCCCCCCEEEC
Q 040833 242 EFLHLGGNQFTG--RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSI-PSSLGKCQNLISLNL 318 (503)
Q Consensus 242 ~~L~ls~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l 318 (503)
+.+++++|.+.. ..+..+.....|+.+++..+.... .+..+..+++|+.+++..+...... ...+..+++++.+++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred ccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccc
Confidence 999999998753 455667788899999999998874 4556788999999999988876443 456788999999999
Q ss_pred cCCcCcccCCcchhccccccceeEccCCCCc-cCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833 319 SNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN-GPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 319 ~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 397 (503)
+.|.+....+..+..++.+ +.+++++|.+. ...+..|..+++|++|++++|++++..|..|.++++|++|+|++|+++
T Consensus 453 s~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp TTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 9999997778888888888 99999999754 456788999999999999999999888999999999999999999999
Q ss_pred ccCchhccCCCCCCEEeCCCCccccccCccCcCC-CCCCeeecCCCcCcccCCCCCccCCC
Q 040833 398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF-PFLQNLNLSFNHFEGEVPIKGVFSNS 457 (503)
Q Consensus 398 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l 457 (503)
+..+..|.++++|++|+|++|++++..|..+..+ ++|++|++++|++.|.+...++...+
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 8889999999999999999999999999999888 68999999999999998755443333
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.5e-38 Score=313.48 Aligned_cols=347 Identities=18% Similarity=0.193 Sum_probs=255.9
Q ss_pred cEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEccc
Q 040833 91 NYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISR 169 (503)
Q Consensus 91 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~ 169 (503)
+.++.+++.+. .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+....+. +..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 56788887776 777765 35788999999888877777888888888888888887766544 66666666666666
Q ss_pred ccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCC
Q 040833 170 NHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGN 249 (503)
Q Consensus 170 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n 249 (503)
|.+.... ...+..+++ |++|++++|.+....+..+..+++|++|++++|
T Consensus 90 n~l~~~~------~~~~~~l~~-------------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 90 NRLKLIP------LGVFTGLSN-------------------------LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SCCCSCC------TTSSTTCTT-------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEEECCT
T ss_pred CcCCccC------cccccCCCC-------------------------CCEEECCCCccccCChhHccccccCCEEECCCC
Confidence 6554311 112333444 455555555444444455566666666666666
Q ss_pred cccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc
Q 040833 250 QFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT 329 (503)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 329 (503)
.+.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 66655566666666777777777766655555566777777777777777666666677777777777777766656665
Q ss_pred chhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833 330 EVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409 (503)
Q Consensus 330 ~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 409 (503)
......++ +.|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++
T Consensus 219 ~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 219 NCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 55555566 78888888887555567888899999999999998877888889999999999999999888889999999
Q ss_pred CCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833 410 IENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS 473 (503)
Q Consensus 410 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~ 473 (503)
|++|+|++|+++...+..|..+++|++|++++|++.+.++..+.+.....+.+.++...|.++.
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 9999999999997777788899999999999999998887666666666677778888886653
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-37 Score=307.39 Aligned_cols=393 Identities=23% Similarity=0.317 Sum_probs=244.6
Q ss_pred CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCC-------------CEEEcccceeeeeC
Q 040833 14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRM-------------LYLLLGVNKLSGEI 80 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~i~~~~ 80 (503)
..++|++|++++|.+ +.+|++|+++++|++|++++|.+.+..|..++.+++| ++|++++|.++ .+
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SL 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cC
Confidence 458899999999999 5889899999999999999999988889888888764 88889888887 34
Q ss_pred CccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCC
Q 040833 81 PFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILH 160 (503)
Q Consensus 81 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~ 160 (503)
|.. .++|++|++++|.+. .+|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ .+.++.++
T Consensus 87 p~~---~~~L~~L~l~~n~l~-~lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCCCTTCT
T ss_pred CCC---cCCCCEEEccCCcCC-ccccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-CcccCCCC
Confidence 432 368888999988887 46642 5788999998888873 3321 2688889998888876 44688888
Q ss_pred CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCC
Q 040833 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVN 240 (503)
Q Consensus 161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 240 (503)
+|++|++++|.+..... . ..+|++|++++|.+.+ +| .+..++ +|++|++++|.+.+ .+.. .++
T Consensus 154 ~L~~L~l~~N~l~~lp~-------~---~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~ 216 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPD-------L---PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLS 216 (454)
T ss_dssp TCCEEECCSSCCSCCCC-------C---CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTT
T ss_pred CCCEEECCCCcCcccCC-------C---cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCc
Confidence 88999988888764221 1 2478888888888875 44 466665 78888888888774 3322 258
Q ss_pred CcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833 241 LEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN 320 (503)
Q Consensus 241 L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 320 (503)
|++|++++|.+. .+| .+..+++|++|++++|.+.+ .|. .+++|++|++++|.+.+ .+.. +++|++|++++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 888888888887 455 47888888888888888874 333 24788888888888875 3332 37888888888
Q ss_pred CcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccC
Q 040833 321 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNI 400 (503)
Q Consensus 321 n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 400 (503)
|.+.+ ++.. .+.+ +.|++++|.+++. +. ..++|++|++++|.+++ +|.. +++|++|++++|.++ .+
T Consensus 287 N~l~~-l~~~---~~~L-~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~l 352 (454)
T 1jl5_A 287 NIFSG-LSEL---PPNL-YYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EV 352 (454)
T ss_dssp SCCSE-ESCC---CTTC-CEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CC
T ss_pred CccCc-ccCc---CCcC-CEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cc
Confidence 88874 2211 1344 7888888888742 11 12578888888888874 4443 478888888888887 45
Q ss_pred chhccCCCCCCEEeCCCCcccc--ccCccCcCC-------------CCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833 401 PSSLSSLRGIENLDLSRNNLSG--RIPKYLENF-------------PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN 465 (503)
Q Consensus 401 ~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~-------------~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n 465 (503)
|. .+++|++|++++|++++ ..|..+..+ ++|++|++++|++++... ...+++.+.+.+|
T Consensus 353 p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~---iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 353 PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD---IPESVEDLRMNSE 426 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------
T ss_pred cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc---chhhHhheeCcCc
Confidence 54 46888888888888886 566666555 678888888888775211 1245666666555
Q ss_pred CCC
Q 040833 466 DNL 468 (503)
Q Consensus 466 ~~~ 468 (503)
...
T Consensus 427 ~~~ 429 (454)
T 1jl5_A 427 RVV 429 (454)
T ss_dssp ---
T ss_pred ccC
Confidence 433
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-36 Score=300.28 Aligned_cols=345 Identities=29% Similarity=0.414 Sum_probs=210.2
Q ss_pred CCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEE
Q 040833 15 LSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYIC 94 (503)
Q Consensus 15 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 94 (503)
++++++|+++++.++ ..| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 456677777766666 333 25666677777777776664433 6666677777777666663332 66666666666
Q ss_pred ccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCC
Q 040833 95 VPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGN 174 (503)
Q Consensus 95 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~ 174 (503)
+++|.+. .++. + ..+++|++|++++|.+++ .+ .+..+++|++|++++ .+.. .+.+..+++
T Consensus 119 L~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~-~~~~~~l~~------------- 178 (466)
T 1o6v_A 119 LFNNQIT-DIDP-L-KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD-LKPLANLTT------------- 178 (466)
T ss_dssp CCSSCCC-CCGG-G-TTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC-CGGGTTCTT-------------
T ss_pred CCCCCCC-CChH-H-cCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC-chhhccCCC-------------
Confidence 6666665 3333 2 336666666666666652 22 355566666665542 2221 111444444
Q ss_pred CCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc
Q 040833 175 GKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR 254 (503)
Q Consensus 175 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 254 (503)
|++|++++|.+.+. ..+..++ +|++|++++|.+.+..+ +..+++|++|++++|.+++.
T Consensus 179 -----------------L~~L~l~~n~l~~~--~~l~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 179 -----------------LERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp -----------------CCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred -----------------CCEEECcCCcCCCC--hhhccCC-CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence 44555544444322 1233333 55555555555543322 44455666666666665532
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833 255 IPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 334 (503)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 334 (503)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 308 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred --hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC
Confidence 245566666666666666654332 5666677777777776664333 5666777777777777664322 5566
Q ss_pred ccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEe
Q 040833 335 SSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLD 414 (503)
Q Consensus 335 ~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 414 (503)
+++ +.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|+.|+
T Consensus 309 ~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 309 KNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp TTC-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCC-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 666 777777777765543 66778888888888888754 467788888888888888886655 77888888888
Q ss_pred CCCCcccc
Q 040833 415 LSRNNLSG 422 (503)
Q Consensus 415 L~~n~l~~ 422 (503)
+++|++++
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 88888875
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.1e-37 Score=301.39 Aligned_cols=382 Identities=25% Similarity=0.319 Sum_probs=271.5
Q ss_pred CccccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCC-------------CEEECCCCccccCCCccccCCCCCCE
Q 040833 2 NELVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSL-------------EALSASANQFVGQIPETLSQLKRMLY 68 (503)
Q Consensus 2 ~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L-------------~~L~l~~n~i~~~~~~~~~~l~~L~~ 68 (503)
|.+ +.+|.+|+++++|++|++++|.+.+..|..++++++| ++|++++|.+++ +|.. .++|++
T Consensus 21 n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~ 95 (454)
T 1jl5_A 21 SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLES 95 (454)
T ss_dssp --------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSE
T ss_pred Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCE
Confidence 667 8999999999999999999999998999999998865 999999999885 3432 379999
Q ss_pred EEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc
Q 040833 69 LLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG 148 (503)
Q Consensus 69 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 148 (503)
|++++|.+++ +|.. .++|++|++++|.+. .++.. .++|++|++++|.+++ +| .+..+++|++|++++|.
T Consensus 96 L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 96 LVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp EECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred EEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence 9999999985 6643 489999999999987 44432 3799999999999995 77 59999999999999999
Q ss_pred CcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc
Q 040833 149 FSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF 228 (503)
Q Consensus 149 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 228 (503)
+.+.... ..+|++|++++|.+... ..+..+++|++|++++|.+.+ +|. .+++|++|++++|.+.
T Consensus 165 l~~lp~~---~~~L~~L~L~~n~l~~l--------~~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 165 LKKLPDL---PPSLEFIAAGNNQLEEL--------PELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE 228 (454)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS
T ss_pred CcccCCC---cccccEEECcCCcCCcC--------ccccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC
Confidence 8864332 35999999999988752 247788999999999999885 333 2358999999999998
Q ss_pred cccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc
Q 040833 229 GNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG 308 (503)
Q Consensus 229 ~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 308 (503)
.++ .+..+++|++|++++|.+++ .|. ..++|+.|++++|.+.+ .|.. +++|++|++++|.+.+.. .
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~--- 294 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E--- 294 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---
Confidence 555 48899999999999999985 333 34799999999999885 3432 489999999999998532 1
Q ss_pred CCCCCCEEECcCCcCcccCCcchhccc-cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC
Q 040833 309 KCQNLISLNLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE 387 (503)
Q Consensus 309 ~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (503)
..++|++|++++|.+.+ ++ .++ .+ +.|++++|++++ ++.. +++|++|++++|.++ .+|. .+++|+
T Consensus 295 ~~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 LPPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp CCTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred cCCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 13799999999999984 22 333 45 999999999985 4443 589999999999998 4555 478999
Q ss_pred EEECCCCcCcc--cCchhccCC-------------CCCCEEeCCCCcccc--ccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 388 QLVMNGNFFQG--NIPSSLSSL-------------RGIENLDLSRNNLSG--RIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 388 ~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+|++++|.+++ .+|..+..+ ++|++|++++|++++ .+| ++++.|.+.+|.+.+..+
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccc
Confidence 99999999998 677887776 889999999999985 333 457888899998886544
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-35 Score=295.31 Aligned_cols=346 Identities=28% Similarity=0.374 Sum_probs=253.8
Q ss_pred CCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEE
Q 040833 39 LSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118 (503)
Q Consensus 39 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 118 (503)
++++++|+++++.+.. +| .+..+++|++|++++|.+.... . +.++++|++|++++|.+. .++. + ..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIA-DITP-L-ANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccc-cChh-h-cCCCCCCEE
Confidence 4556666666666553 23 2555666666666666655322 2 556666666666666555 2332 2 235556666
Q ss_pred EccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833 119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS 198 (503)
Q Consensus 119 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 198 (503)
++++|.+++. + .+..+++ |++|++++|.+... ..+..+++|++|+++
T Consensus 118 ~L~~n~l~~~-~-~~~~l~~-----------------------L~~L~l~~n~l~~~--------~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 118 TLFNNQITDI-D-PLKNLTN-----------------------LNRLELSSNTISDI--------SALSGLTSLQQLSFG 164 (466)
T ss_dssp ECCSSCCCCC-G-GGTTCTT-----------------------CSEEEEEEEEECCC--------GGGTTCTTCSEEEEE
T ss_pred ECCCCCCCCC-h-HHcCCCC-----------------------CCEEECCCCccCCC--------hhhccCCcccEeecC
Confidence 6655555522 1 1444444 44555544444321 124455666666665
Q ss_pred CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833 199 DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE 278 (503)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 278 (503)
+ .+.... .+..++ +|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 165 ~-~~~~~~--~~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 165 N-QVTDLK--PLANLT-TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp E-SCCCCG--GGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred C-cccCch--hhccCC-CCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence 3 233222 255664 899999999998754 347889999999999999986544 77899999999999998854
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833 279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI 358 (503)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~ 358 (503)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..++.+ +.|++++|.+.+..+ +..
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL-TNLELNENQLEDISP--ISN 307 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC-SEEECCSSCCSCCGG--GGG
T ss_pred --hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc-CeEEcCCCcccCchh--hcC
Confidence 467889999999999999986544 8889999999999999985433 7778888 999999999986543 788
Q ss_pred CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeee
Q 040833 359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLN 438 (503)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 438 (503)
+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++..| +..+++|+.|+
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 9999999999999987655 77899999999999999865 578899999999999999997776 88999999999
Q ss_pred cCCCcCccc
Q 040833 439 LSFNHFEGE 447 (503)
Q Consensus 439 l~~n~l~~~ 447 (503)
+++|++++.
T Consensus 382 l~~n~~~~~ 390 (466)
T 1o6v_A 382 LNDQAWTNA 390 (466)
T ss_dssp CCCEEEECC
T ss_pred ccCCcccCC
Confidence 999999974
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.5e-36 Score=294.35 Aligned_cols=363 Identities=20% Similarity=0.228 Sum_probs=254.6
Q ss_pred cccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCcc
Q 040833 4 LVGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFS 83 (503)
Q Consensus 4 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 83 (503)
+++..+..++++++|++|++++|.+++. | .|..+++|++|++++|.+.+. | +..+++|++|++++|.+++ ++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--
Confidence 4455566778888999999999988854 5 688889999999999988864 3 8888899999999988874 33
Q ss_pred ccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCc
Q 040833 84 IYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLE 163 (503)
Q Consensus 84 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~ 163 (503)
++++++|++|++++|.+. .++ + ..+++|++|++++|.+++. .+..+++|++|++++|...+.. .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~-~l~--~-~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLT-KLD--V-SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCS-CCC--C-TTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCC-eec--C-CCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCC
Confidence 788888899999888887 454 3 3488888888888888753 3777888888888888544333 466777788
Q ss_pred EEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcE
Q 040833 164 WVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEF 243 (503)
Q Consensus 164 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 243 (503)
+|++++|.++.. .+..+++|+.|++++|.+.+. .+..++ +|++|++++|.+.+ +| +..+++|++
T Consensus 174 ~L~ls~n~l~~l---------~l~~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~ 237 (457)
T 3bz5_A 174 TLDCSFNKITEL---------DVSQNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTY 237 (457)
T ss_dssp EEECCSSCCCCC---------CCTTCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSE
T ss_pred EEECCCCcccee---------ccccCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCCcccc-cC--ccccCCCCE
Confidence 888877777642 144566777777777776643 144443 67777777776665 23 566667777
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833 244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323 (503)
Q Consensus 244 L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (503)
|++++|.+++.. +..+++|+.|+++++ +|+.+++++|.+.+..| +..+++|+.|++++|..
T Consensus 238 L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 238 FDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp EECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred EEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence 777777666432 344556666665544 34556666666544433 45678888888888876
Q ss_pred cccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchh
Q 040833 324 SGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 403 (503)
.+.+|.. ...+ +.++ +..+++|++|++++|.+++. + +..+++|+.|++++|++++
T Consensus 299 l~~l~~~---~~~L-~~L~-------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~----- 353 (457)
T 3bz5_A 299 LYLLDCQ---AAGI-TELD-------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD----- 353 (457)
T ss_dssp CCEEECT---TCCC-SCCC-------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-----
T ss_pred cceeccC---CCcc-eEec-------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-----
Confidence 6554432 2222 3333 33446888999999988863 2 7788899999999998874
Q ss_pred ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC
Q 040833 404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI 450 (503)
Q Consensus 404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 450 (503)
++.|..|++++|.+.+. ..+..|+.+++++|.+++.+|.
T Consensus 354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 25667778888888754 2445678889999999888773
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-35 Score=291.08 Aligned_cols=319 Identities=20% Similarity=0.184 Sum_probs=183.8
Q ss_pred cEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCC
Q 040833 19 RILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVN 98 (503)
Q Consensus 19 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n 98 (503)
+.++.+++.++ .+|..+. +++++|++++|.+....+..|.++++|++|+|++|.+....|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46666777666 5565543 56777777777777666777777777777777777777666777777777777777777
Q ss_pred CCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCC
Q 040833 99 QLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKK 177 (503)
Q Consensus 99 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 177 (503)
.+. .+|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+. +..+++|++|++++|.+..
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---
Confidence 776 56655555577777777777777766666777777777777777766655443 5566666666666665543
Q ss_pred CCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCc
Q 040833 178 DDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPG 257 (503)
Q Consensus 178 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~ 257 (503)
.....+..+++|+.|++++|.+....+..+..++ +|++|++++|...+..+.......+|++|++++|.+++..+.
T Consensus 167 ---~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 242 (477)
T 2id5_A 167 ---IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242 (477)
T ss_dssp ---CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH
T ss_pred ---cChhHhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH
Confidence 1122344455555555555555444443444443 455555555544433333333334555555555555533333
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccc
Q 040833 258 SIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL 337 (503)
Q Consensus 258 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l 337 (503)
.+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..++++
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCccc
Confidence 44455555555555555554444445555555555555555554444455555555555555555543333333344444
Q ss_pred cceeEccCCCCc
Q 040833 338 SIYLDLSQNQLN 349 (503)
Q Consensus 338 ~~~L~l~~n~l~ 349 (503)
+.|++++|++.
T Consensus 323 -~~L~l~~N~l~ 333 (477)
T 2id5_A 323 -ETLILDSNPLA 333 (477)
T ss_dssp -CEEECCSSCEE
T ss_pred -CEEEccCCCcc
Confidence 44444444443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.8e-34 Score=283.89 Aligned_cols=356 Identities=19% Similarity=0.230 Sum_probs=216.5
Q ss_pred cCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCch
Q 040833 27 NLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPS 106 (503)
Q Consensus 27 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 106 (503)
......+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+++ ++ ++.+++|++|++++|.+. .++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~-~~~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCC-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCc-eee-
Confidence 34444556677888999999999888854 5 68888899999999998884 33 788888888888888887 344
Q ss_pred hhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccc
Q 040833 107 DLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSL 186 (503)
Q Consensus 107 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 186 (503)
+. .+++|++|++++|.+++ ++ +..+++|++|++++|.+.+. .+..+++|++|++++|.... .. .+
T Consensus 102 -~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~------~~--~~ 166 (457)
T 3bz5_A 102 -VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKIT------KL--DV 166 (457)
T ss_dssp -CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCC------CC--CC
T ss_pred -cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccc------cc--cc
Confidence 33 48888888888888874 33 77888888888888877763 36677777777777774322 11 24
Q ss_pred cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCC
Q 040833 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQ 266 (503)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~ 266 (503)
..+++|++|++++|.+.+. + +..++ +|+.|++++|.+.+. .+..+++|++|++++|.+++ .| +..+++|+
T Consensus 167 ~~l~~L~~L~ls~n~l~~l-~--l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITEL-D--VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp TTCTTCCEEECCSSCCCCC-C--CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred ccCCcCCEEECCCCcccee-c--cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 4456666666666666542 2 33332 555555555555433 24455555555555555553 22 44555555
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCC
Q 040833 267 RLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN 346 (503)
Q Consensus 267 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n 346 (503)
.|++++|.+++.. ...+++|+.|+++.+ +|+++++++|...+.+| +..++++ +.|++++|
T Consensus 237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L-~~L~Ls~n 296 (457)
T 3bz5_A 237 YFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKI-KELDVTHN 296 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTC-CCCCCTTC
T ss_pred EEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccC-CEEECCCC
Confidence 5555555554322 233444555544432 23344445554433333 2233444 45555555
Q ss_pred CCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc
Q 040833 347 QLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK 426 (503)
Q Consensus 347 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 426 (503)
...+.++. ..++|+.|++ ..+++|++|++++|.+++. .+..+++|+.|++++|++++
T Consensus 297 ~~l~~l~~---~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~---- 353 (457)
T 3bz5_A 297 TQLYLLDC---QAAGITELDL-------------SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD---- 353 (457)
T ss_dssp TTCCEEEC---TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB----
T ss_pred cccceecc---CCCcceEech-------------hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC----
Confidence 44333221 1233333333 3346778888888888763 26777888888888887764
Q ss_pred cCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833 427 YLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN 465 (503)
Q Consensus 427 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n 465 (503)
++.|+.|++++|.+.+. ..+..+..++++.|
T Consensus 354 ----l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 354 ----FSSVGKIPALNNNFEAE----GQTITMPKETLTNN 384 (457)
T ss_dssp ----CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTT
T ss_pred ----ccccccccccCCcEEec----ceeeecCccccccC
Confidence 25667777777777765 12344555555555
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-34 Score=279.27 Aligned_cols=333 Identities=21% Similarity=0.234 Sum_probs=228.0
Q ss_pred CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEE
Q 040833 87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWV 165 (503)
Q Consensus 87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L 165 (503)
++++++++++++.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+....+. +..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467777777777766 66666655577777777777777765556677777777777777766655443 4555555555
Q ss_pred EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245 (503)
Q Consensus 166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 245 (503)
++++|. +....+..+..++ +|++|++++|.+....+..+..+++|++|+
T Consensus 123 ~L~~n~------------------------------l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 123 VLERND------------------------------LSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp ECCSSC------------------------------CCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred ECCCCc------------------------------cCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 555544 4422222233333 556666666655555555566666777777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG 325 (503)
Q Consensus 246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 325 (503)
+++|.+++. .+..+++|+.+++++|.+.+. ...++|++|++++|.+..... ...++|++|++++|.+.+
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCC
T ss_pred CCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCcc
Confidence 777766643 244556777777777765532 234567777777777764422 224678888888887764
Q ss_pred cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS 405 (503)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 405 (503)
. ..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|..+.
T Consensus 241 ~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 241 T--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp C--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred c--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 3 456677777 788888888887777788888899999999998874 4556677889999999999888 5566677
Q ss_pred CCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCccc
Q 040833 406 SLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 406 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~ 471 (503)
.+++|++|++++|+++... +..+++|+.|++++|++.+... ...+..+....+.+++..|.+
T Consensus 316 ~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred ccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence 8899999999999987542 6778899999999999987543 344566666667777777754
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.7e-33 Score=267.64 Aligned_cols=305 Identities=25% Similarity=0.392 Sum_probs=168.4
Q ss_pred CCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEE
Q 040833 86 NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWV 165 (503)
Q Consensus 86 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L 165 (503)
.+++|++|+++++.+. .++. +. .+++|++|++++|.+++ ++. +..+++|++|++++|.+... +.+.
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~-~~~~-------- 107 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI-SALQ-------- 107 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GGGT--------
T ss_pred hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc-hHHc--------
Confidence 4455555555555554 3332 22 25555555555555542 222 44555555555555544321 2233
Q ss_pred EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245 (503)
Q Consensus 166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 245 (503)
.+++|++|++++|.+.+..+ +..++ +|++|++++|......+ .+..+++|++|+
T Consensus 108 ----------------------~l~~L~~L~l~~n~i~~~~~--~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~ 161 (347)
T 4fmz_A 108 ----------------------NLTNLRELYLNEDNISDISP--LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161 (347)
T ss_dssp ----------------------TCTTCSEEECTTSCCCCCGG--GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEE
T ss_pred ----------------------CCCcCCEEECcCCcccCchh--hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEE
Confidence 44445555555544442211 33332 45555555553332222 255556666666
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG 325 (503)
Q Consensus 246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 325 (503)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence 66665553322 5555666666666666553322 5556666666666666653332 5556666666666666653
Q ss_pred cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS 405 (503)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 405 (503)
. +. +..++.+ ++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+.
T Consensus 236 ~-~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 236 L-SP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp C-GG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred C-cc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 2 22 4455555 5666666666532 3456667777777777777643 3466677777777777777766667777
Q ss_pred CCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833 406 SLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 406 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777777777765544 666777777777777764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=275.14 Aligned_cols=309 Identities=17% Similarity=0.174 Sum_probs=188.6
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 95 (503)
+++++|+++++.++...+..|..+++|++|++++|.+....+.+|..+++|++|++++|.+....|..|.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45555555555555333333455555555555555555444445555555555555555555444444555555555555
Q ss_pred cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCC
Q 040833 96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175 (503)
Q Consensus 96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 175 (503)
++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+... .+.
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~------------------ 183 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLS------------------ 183 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGG------------------
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccc------------------
Confidence 555554 44444433455555555555555544444444555555555555444322 122
Q ss_pred CCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC
Q 040833 176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI 255 (503)
Q Consensus 176 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 255 (503)
.+++|+.+++++|.+... ..++.+++|++++|.+... +. ...++|++|++++|.+++.
T Consensus 184 ------------~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 184 ------------LIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp ------------GCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-
T ss_pred ------------cccccceeeccccccccc------CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-
Confidence 335556666665555421 1123566667766666543 22 2236777888888877743
Q ss_pred CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccc
Q 040833 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLS 335 (503)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 335 (503)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +..+..+++|++|++++|++. .+|..+..++
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~ 318 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence 4667778888888888888777777788888888888888887743 444567788888888888887 5666677777
Q ss_pred cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833 336 SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSG 374 (503)
Q Consensus 336 ~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 374 (503)
.+ +.|++++|.++... +..+++|++|++++|++..
T Consensus 319 ~L-~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 319 RL-ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TC-SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred cC-CEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 77 88888888887542 5667889999999998874
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-33 Score=289.48 Aligned_cols=342 Identities=21% Similarity=0.244 Sum_probs=241.9
Q ss_pred CCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEE
Q 040833 87 LSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWV 165 (503)
Q Consensus 87 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L 165 (503)
+.+++.++++++.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+. ++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 466777777777775 66666655577777777777777766666777777777777777766655444 4555555555
Q ss_pred EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEE
Q 040833 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLH 245 (503)
Q Consensus 166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 245 (503)
++++| .+....+..|..++ +|++|++++|.+.+..+..+..+++|++|+
T Consensus 129 ~L~~n------------------------------~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 129 VLERN------------------------------DLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp ECCSS------------------------------CCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred EeeCC------------------------------CCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 55554 44433333334443 566666666666555555666677777777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcc
Q 040833 246 LGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSG 325 (503)
Q Consensus 246 ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 325 (503)
+++|.+++. .+..++.|+.|++++|.+.+ +...+.|+.|++++|.+....+.. .++|+.|++++|.+.+
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC
Confidence 777766643 24456677777777776653 234457778888887776443322 3578888888888874
Q ss_pred cCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhcc
Q 040833 326 TIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLS 405 (503)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 405 (503)
+..+..++.+ +.|++++|.+.+..+..|..+++|++|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+.
T Consensus 247 --~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 3567777777 888888888887878888889999999999999985 4666677899999999999998 5677788
Q ss_pred CCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCCCCC
Q 040833 406 SLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHLSTC 480 (503)
Q Consensus 406 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~ 480 (503)
.+++|++|+|++|.++... +..+++|+.|++++|++.+.+. ...+..+....+.+++..|+....+....|
T Consensus 322 ~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp HHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred cCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcchhccCCcc
Confidence 8999999999999998543 6778999999999999997643 344566666667788888877655555545
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9e-34 Score=266.90 Aligned_cols=254 Identities=31% Similarity=0.541 Sum_probs=229.9
Q ss_pred cCcEEEeecccccc--ccchhccCCCCCcEEEccC-CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 040833 216 RLRILIVGNNQLFG--NIPSGLRNLVNLEFLHLGG-NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITL 292 (503)
Q Consensus 216 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 292 (503)
++++|+++++.+.+ ..+..+..+++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 68888888888887 6778888899999999995 88888888889999999999999999988888888999999999
Q ss_pred EccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccc-cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCc
Q 040833 293 NFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENK 371 (503)
Q Consensus 293 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 371 (503)
++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ .+ ++|++++|.+.+..+..+..++ |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999888888899999999999999999888898888888 55 8999999999988888888887 9999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCC
Q 040833 372 LSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK 451 (503)
Q Consensus 372 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 451 (503)
+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..|..+..+++|++|++++|++++..|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988899999999999999999999866555 888999999999999999899999999999999999999999999888
Q ss_pred CccCCCCceeccCCCCCcccC
Q 040833 452 GVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 452 ~~~~~l~~l~~~~n~~~c~~~ 472 (503)
..+++|+.+++++||++|+.+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 889999999999999999853
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-32 Score=261.51 Aligned_cols=304 Identities=22% Similarity=0.343 Sum_probs=132.4
Q ss_pred CCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEE
Q 040833 39 LSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVL 118 (503)
Q Consensus 39 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 118 (503)
+++|++|+++++.+... + .+..+++|++|++++|.+.. ++. +.++++|++|++++|.+. .++ .+. .+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-Cch-HHc-CCCcCCEE
Confidence 34444444444444321 1 13444444444444444432 111 444444444444444443 222 121 24444444
Q ss_pred EccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECc
Q 040833 119 NLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQIS 198 (503)
Q Consensus 119 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 198 (503)
++++|.+++ .+. +..+++|++|++++|......+.+..+++|++|++++|.+... ..+..+++|++|+++
T Consensus 116 ~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~--------~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 116 YLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV--------TPIANLTDLYSLSLN 185 (347)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECT
T ss_pred ECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc--------hhhccCCCCCEEEcc
Confidence 444444442 111 4444444444444443333333344444444444444443321 113334455555555
Q ss_pred CCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 040833 199 DNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE 278 (503)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 278 (503)
+|.+.+..+ +..++ +++.+++++|.+.+..+ +..+++|++|++++|.+++ .
T Consensus 186 ~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~------------------------~ 236 (347)
T 4fmz_A 186 YNQIEDISP--LASLT-SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD------------------------L 236 (347)
T ss_dssp TSCCCCCGG--GGGCT-TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------C
T ss_pred CCccccccc--ccCCC-ccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC------------------------C
Confidence 554442211 22222 44444444444432221 3344444444444444442 2
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833 279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI 358 (503)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~ 358 (503)
.+ +..+++|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..++.+ +.|++++|.+.+..+..+..
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL-NSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCGGGHHHHHT
T ss_pred cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC-CEEECcCCcCCCcChhHhhc
Confidence 11 33444444444444444422 2344444555555555544422 223444444 55555555555444555556
Q ss_pred CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833 359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 397 (503)
+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6666666666666664433 555666666666666654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-33 Score=284.43 Aligned_cols=314 Identities=19% Similarity=0.203 Sum_probs=256.1
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCC
Q 040833 112 LPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASR 191 (503)
Q Consensus 112 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~ 191 (503)
+.+++.++++++.++...+..+..+++|+.|++++|.+.+..+ ..+..+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-----------------------------~~~~~l~~ 100 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----------------------------YAFAYAHT 100 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----------------------------TTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----------------------------HHhcCCCC
Confidence 5567777777776664444455666666666666666554333 23445566
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271 (503)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 271 (503)
|++|++++|.+.+..+..+..++ +|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 101 L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 101 IQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 77777777777766677777776 89999999999997766678999999999999999998888899999999999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351 (503)
Q Consensus 272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~ 351 (503)
+|.+++. .+..+++|+.|++++|.+.. +...++|++|++++|.+... +..+ .+.+ +.|++++|.+++.
T Consensus 180 ~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L-~~L~L~~n~l~~~ 247 (597)
T 3oja_B 180 SNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--NVEL-TILKLQHNNLTDT 247 (597)
T ss_dssp TSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--CSCC-CEEECCSSCCCCC
T ss_pred CCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--CCCC-CEEECCCCCCCCC
Confidence 9998865 25568999999999998874 34567899999999999743 3322 2455 8999999999863
Q ss_pred CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431 (503)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 431 (503)
..+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 248 --~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred --hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 678899999999999999998889999999999999999999985 5677788999999999999999 556677889
Q ss_pred CCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833 432 PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS 473 (503)
Q Consensus 432 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~ 473 (503)
++|+.|++++|++.+.. ...+++|+.+++++||+.|.+..
T Consensus 324 ~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp TTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH
Confidence 99999999999998664 46789999999999999998753
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=8.3e-36 Score=297.62 Aligned_cols=365 Identities=17% Similarity=0.132 Sum_probs=178.2
Q ss_pred ccCCCCCCEEEcccceeee----eCCccccCCCCCcEEEccCCCCcccCchhhhcCCC----CCCEEEccCCcccc----
Q 040833 60 LSQLKRMLYLLLGVNKLSG----EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLP----NLEVLNLCRNQFTG---- 127 (503)
Q Consensus 60 ~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~----~L~~L~l~~n~~~~---- 127 (503)
+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+...++ +|++|++++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 3444444444444444431 12333444455555555555544333333333333 45555555555552
Q ss_pred cCCccccCCCCCCEEecccCcCcccCCC------ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCc
Q 040833 128 PIPASISNASNLMRLVIAKNGFSGKVPS------LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNN 201 (503)
Q Consensus 128 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~------l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 201 (503)
.++..+..+++|++|++++|.+...... ....++|++|++++|.++..... .+...+..+++|++|++++|.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--PLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--HHHHHHhhCCCCCEEECcCCC
Confidence 2344555555555555555554322111 11233455555555444321100 122334444556666666655
Q ss_pred ccccCchhHhh----ccccCcEEEeeccccccc----cchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCC
Q 040833 202 FGGMLPEAVGN----LSTRLRILIVGNNQLFGN----IPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGN 273 (503)
Q Consensus 202 ~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n 273 (503)
+.+..+..+.. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.....+
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-------------- 247 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL-------------- 247 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH--------------
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHH--------------
Confidence 54332222221 112445555554444432 22333344444444444444332110000
Q ss_pred cccccCCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEECcCCcCcccCCcchhcc-----ccccceeEcc
Q 040833 274 KFWGEIPSSIGNLTLLITLNFEENMLEGS----IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL-----SSLSIYLDLS 344 (503)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~l~~~L~l~ 344 (503)
.+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+... +.+ ++|+++
T Consensus 248 -----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~ 321 (461)
T 1z7x_W 248 -----CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVK 321 (461)
T ss_dssp -----HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECT
T ss_pred -----HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcC
Confidence 011122345555555555555432 23334445555555555555543322222221 233 566666
Q ss_pred CCCCccC----CCcchhcCCCCCeEeCCCCcccccCCccccC-----CCCCCEEECCCCcCcc----cCchhccCCCCCC
Q 040833 345 QNQLNGP----LPSNFGILKNLGAIDISENKLSGQIPSSIGS-----CTRLEQLVMNGNFFQG----NIPSSLSSLRGIE 411 (503)
Q Consensus 345 ~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~ 411 (503)
+|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 6665543 2344556678888888888776544433322 5678888888888875 5667777788888
Q ss_pred EEeCCCCccccccCccC-----cCCCCCCeeecCCCcCcc
Q 040833 412 NLDLSRNNLSGRIPKYL-----ENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 412 ~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~ 446 (503)
+|++++|++++.....+ ...+.|+.|++.++.+..
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 88888888765422221 223467777777776653
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=8.5e-35 Score=290.28 Aligned_cols=305 Identities=17% Similarity=0.095 Sum_probs=216.0
Q ss_pred CCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhc----cccCcEEEeecccccccc----c
Q 040833 161 KLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNL----STRLRILIVGNNQLFGNI----P 232 (503)
Q Consensus 161 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~----~ 232 (503)
+|++|++++|.+..... ..++..+..+++|++|++++|.+.+..+..+... .++|++|++++|.+.+.. +
T Consensus 86 ~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGH--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHH--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 45555555555442110 0234556667777777777777665444443331 125888888888776533 4
Q ss_pred hhccCCCCCcEEEccCCcccccCCcccc-----CCCCCCEEEccCCccccc----CCccccCCCCCCEEEccCCcCcccC
Q 040833 233 SGLRNLVNLEFLHLGGNQFTGRIPGSIV-----DLYKLQRLALEGNKFWGE----IPSSIGNLTLLITLNFEENMLEGSI 303 (503)
Q Consensus 233 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~ 303 (503)
..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+.+..
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 4566678889999998887654333332 356899999999988754 3556677899999999999887543
Q ss_pred -----CccccCCCCCCEEECcCCcCccc----CCcchhccccccceeEccCCCCccCCCcchhc-----CCCCCeEeCCC
Q 040833 304 -----PSSLGKCQNLISLNLSNNNLSGT----IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI-----LKNLGAIDISE 369 (503)
Q Consensus 304 -----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~ 369 (503)
+..+..+++|++|++++|.++.. ++..+..++.+ ++|++++|.+++..+..+.. .++|++|++++
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 22234589999999999999854 46666678888 99999999997654444443 26999999999
Q ss_pred Cccccc----CCccccCCCCCCEEECCCCcCcccCchhccC-----CCCCCEEeCCCCcccc----ccCccCcCCCCCCe
Q 040833 370 NKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSS-----LRGIENLDLSRNNLSG----RIPKYLENFPFLQN 436 (503)
Q Consensus 370 n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~ 436 (503)
|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 999864 4556777899999999999998665554432 6899999999999986 56777888999999
Q ss_pred eecCCCcCcccCC------CCCccCCCCceeccCCCCC
Q 040833 437 LNLSFNHFEGEVP------IKGVFSNSSAISIDGNDNL 468 (503)
Q Consensus 437 L~l~~n~l~~~~~------~~~~~~~l~~l~~~~n~~~ 468 (503)
|++++|++.+... .......++.|.+.++.+.
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 9999999875411 0112345777777665443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1e-30 Score=248.54 Aligned_cols=287 Identities=18% Similarity=0.252 Sum_probs=180.2
Q ss_pred CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEcc
Q 040833 17 KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVP 96 (503)
Q Consensus 17 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 96 (503)
++++++++++.++ ..|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7889999988888 5666554 688999999999887777788999999999999999887778889999999999999
Q ss_pred CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcc--cCCC-ccCCCCCcEEEcccccCC
Q 040833 97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPS-LKILHKLEWVGISRNHLG 173 (503)
Q Consensus 97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-l~~l~~L~~L~l~~n~l~ 173 (503)
+|.+. .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+. +..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99887 7776653 688999999888886666678888888888888887753 2222 566666666666666655
Q ss_pred CCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccc
Q 040833 174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253 (503)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 253 (503)
.... .+ .++|++|++++|.+.+..+. .+..+++|++|++++|.+++
T Consensus 185 ~l~~-------~~--~~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 185 TIPQ-------GL--PPSLTELHLDGNKITKVDAA-------------------------SLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SCCS-------SC--CTTCSEEECTTSCCCEECTG-------------------------GGTTCTTCCEEECCSSCCCE
T ss_pred cCCc-------cc--cccCCEEECCCCcCCccCHH-------------------------HhcCCCCCCEEECCCCcCce
Confidence 3211 11 13455555555554444444 44444455555555554444
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC------CCCCCEEECcCCcCcc--
Q 040833 254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK------CQNLISLNLSNNNLSG-- 325 (503)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~~~~-- 325 (503)
..+..+..+++|+.|++++|.+. ..|..+..+++|++|++++|.+++..+..|.. .+.++.+++++|++..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 44444444455555555555444 33344444555555555555554443333322 2455555555555531
Q ss_pred cCCcchhccccccceeEccCC
Q 040833 326 TIPTEVIGLSSLSIYLDLSQN 346 (503)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~n 346 (503)
..|..+..+..+ +.+++++|
T Consensus 310 i~~~~f~~~~~l-~~l~L~~N 329 (330)
T 1xku_A 310 IQPSTFRCVYVR-AAVQLGNY 329 (330)
T ss_dssp SCGGGGTTCCCG-GGEEC---
T ss_pred cCccccccccce-eEEEeccc
Confidence 223344444444 55555554
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=6.1e-32 Score=254.40 Aligned_cols=255 Identities=31% Similarity=0.503 Sum_probs=229.4
Q ss_pred CCCCEEECcCCcccc--cCchhHhhccccCcEEEeec-cccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCC
Q 040833 190 SRLELLQISDNNFGG--MLPEAVGNLSTRLRILIVGN-NQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQ 266 (503)
Q Consensus 190 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~ 266 (503)
.+++.|+++++.+.+ .+|..+..++ +|++|++++ +.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 468888999988887 7788888886 899999995 888878888899999999999999999888888999999999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC-CCCEEECcCCcCcccCCcchhccccccceeEccC
Q 040833 267 RLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ-NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ 345 (503)
Q Consensus 267 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~ 345 (503)
+|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..|..+..+. + +.|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-AFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-SEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-cEEECcC
Confidence 999999999888888899999999999999999888888888887 999999999999988898888886 5 9999999
Q ss_pred CCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccC
Q 040833 346 NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIP 425 (503)
Q Consensus 346 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 425 (503)
|.+++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999988888999999999999999999866554 7889999999999999998999999999999999999999998888
Q ss_pred ccCcCCCCCCeeecCCCcCcccCC
Q 040833 426 KYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 426 ~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
.. ..+++|+.+++++|+..+..|
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CC-ccccccChHHhcCCCCccCCC
Confidence 76 889999999999999665444
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=5.6e-31 Score=250.53 Aligned_cols=286 Identities=21% Similarity=0.261 Sum_probs=180.4
Q ss_pred CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEcc
Q 040833 17 KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICVP 96 (503)
Q Consensus 17 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~ 96 (503)
++++++++++.++ ..|..+. +++++|++++|.+....+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888888888887 5666553 688888888888887777788888888888888888887778888888888888888
Q ss_pred CCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcc--cCCC-ccCCCCCcEEEcccccCC
Q 040833 97 VNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSG--KVPS-LKILHKLEWVGISRNHLG 173 (503)
Q Consensus 97 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~-l~~l~~L~~L~l~~n~l~ 173 (503)
+|.+. .+|..++ ++|++|++++|.++...+..+..+++|++|++++|.+.. ..+. +..+ +|++|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 88887 7776653 688888888888886555667788888888888887753 2222 3444 5555555555554
Q ss_pred CCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccc
Q 040833 174 NGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTG 253 (503)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 253 (503)
. +|..+ +++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 186 ~-------------------------------l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 186 G-------------------------------IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp S-------------------------------CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred c-------------------------------cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 3 12111 1245555555555544444445555555555555555554
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccC------CCCCCEEECcCCcCc--c
Q 040833 254 RIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGK------CQNLISLNLSNNNLS--G 325 (503)
Q Consensus 254 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L~~L~l~~n~~~--~ 325 (503)
..+..+..+++|+.|++++|.+. ..|..+..+++|++|++++|.++...+..+.. .++|+.+++++|++. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 44445555555555555555555 34444555555555555555555444444332 244556666666554 3
Q ss_pred cCCcchhccccccceeEccCC
Q 040833 326 TIPTEVIGLSSLSIYLDLSQN 346 (503)
Q Consensus 326 ~~~~~~~~~~~l~~~L~l~~n 346 (503)
..+..+..++.+ +.+++++|
T Consensus 311 ~~~~~~~~l~~L-~~l~l~~n 330 (332)
T 2ft3_A 311 VQPATFRCVTDR-LAIQFGNY 330 (332)
T ss_dssp SCGGGGTTBCCS-TTEEC---
T ss_pred cCcccccccchh-hhhhcccc
Confidence 344445555555 55565554
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.8e-30 Score=242.91 Aligned_cols=246 Identities=24% Similarity=0.295 Sum_probs=125.1
Q ss_pred CCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEc
Q 040833 191 RLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLAL 270 (503)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l 270 (503)
.+++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++. .|..+. ++|++|++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEEC
Confidence 344444444444433333344443 45555555554444444445555555555555555442 222221 35555555
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCC
Q 040833 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEG--SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQL 348 (503)
Q Consensus 271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l 348 (503)
++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+. .+|..+. +.+ ++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L-~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSL-TELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTC-SEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccC-CEEECCCCcC
Confidence 5555554444445555555555555555432 33444555555555555555554 2333222 333 5555555555
Q ss_pred ccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccC
Q 040833 349 NGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL 428 (503)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 428 (503)
++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 5554555555566666666666655555555555566666666666555 445555555666666666666655444444
Q ss_pred cC------CCCCCeeecCCCcCc
Q 040833 429 EN------FPFLQNLNLSFNHFE 445 (503)
Q Consensus 429 ~~------~~~L~~L~l~~n~l~ 445 (503)
.. .+.++.+++++|++.
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCcccccccccccceEeecCccc
Confidence 32 245556666666654
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.4e-30 Score=244.35 Aligned_cols=266 Identities=18% Similarity=0.234 Sum_probs=164.3
Q ss_pred CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269 (503)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ 269 (503)
+++++|++++|.+....+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++. .|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEE
Confidence 3455566666655544444555554 56666666666665555566666666666666666663 333322 5666777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCcc--cCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833 270 LEGNKFWGEIPSSIGNLTLLITLNFEENMLEG--SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 347 (503)
Q Consensus 270 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~ 347 (503)
+++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+. .+|..+. +.+ ++|++++|.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L-~~L~l~~n~ 204 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETL-NELHLDHNK 204 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSC-SCCBCCSSC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCC-CEEECCCCc
Confidence 77766665555556666777777777766642 344555555 6777777777666 3444332 344 677777777
Q ss_pred CccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc
Q 040833 348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY 427 (503)
Q Consensus 348 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 427 (503)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 77666666777777777777777777666666777777777777777776 55666777777777777777777665555
Q ss_pred CcC------CCCCCeeecCCCcCcc--cCC-CCCccCCCCceeccCC
Q 040833 428 LEN------FPFLQNLNLSFNHFEG--EVP-IKGVFSNSSAISIDGN 465 (503)
Q Consensus 428 ~~~------~~~L~~L~l~~n~l~~--~~~-~~~~~~~l~~l~~~~n 465 (503)
|.. .+.|+.|++++|++.. ..| ....+++|+.+++++|
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 543 3567777777777662 222 1233455666666555
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2e-32 Score=281.87 Aligned_cols=431 Identities=16% Similarity=0.097 Sum_probs=257.9
Q ss_pred ccCCCcccCCCCCCcEEEcccCcCC---CCCCcccC------------CCCCCCEEECCCCccccCCCccccC-CC-CCC
Q 040833 5 VGKVPGKLGSLSKLRILAMHRNNLS---GEIPSSFG------------NLSSLEALSASANQFVGQIPETLSQ-LK-RML 67 (503)
Q Consensus 5 ~~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~~~------------~l~~L~~L~l~~n~i~~~~~~~~~~-l~-~L~ 67 (503)
+...+..+..+++|++|+++++... +..|..+. .+++|++|++++|.+.+..+..+.. ++ +|+
T Consensus 62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE 141 (592)
T ss_dssp GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence 3444555678899999999875421 12332222 6889999999999887665666655 34 499
Q ss_pred EEEccccee-ee-eCCccccCCCCCcEEEccCCCCcccC---chhhhcCCCCCCEEEccCCccc----ccCCccccCCCC
Q 040833 68 YLLLGVNKL-SG-EIPFSIYNLSSLNYICVPVNQLQGSL---PSDLGFTLPNLEVLNLCRNQFT----GPIPASISNASN 138 (503)
Q Consensus 68 ~L~L~~n~i-~~-~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~~~ 138 (503)
+|++++|.. .. .++....++++|++|++++|.+.+.. ...+...+++|++|++++|.++ ..++..+..+++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 999998872 21 12223447899999999999876442 1223345899999999999886 344455668899
Q ss_pred CCEEecccCcCcccCCCccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCc
Q 040833 139 LMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLR 218 (503)
Q Consensus 139 L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 218 (503)
|++|++++|.+.+....+..+++|++++++....... .......+..+++|+.++++++... .++..+...+ +|+
T Consensus 222 L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~ 296 (592)
T 3ogk_B 222 LVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIG---MPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAA-QIR 296 (592)
T ss_dssp CCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTT---CTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGG-GCC
T ss_pred CcEEeccCccHHHHHHHHhhhhHHHhhcccccccccc---hHHHHHHhhccccccccCccccchh-HHHHHHhhcC-CCc
Confidence 9999999988876554478889999999976332210 1133445667788888888875333 4555555554 888
Q ss_pred EEEeeccccccccc-hhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccC-----------CcccccCC-ccccC
Q 040833 219 ILIVGNNQLFGNIP-SGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG-----------NKFWGEIP-SSIGN 285 (503)
Q Consensus 219 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~-~~~~~ 285 (503)
+|++++|.+.+... ..+..+++|++|+++++...+..+..+..+++|++|++++ +.+++... .....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99998888654333 3457788888888884322222233335677888888883 33432211 12344
Q ss_pred CCCCCEEEccCCcCcccCCccccC-CCCCCEEECc----CCcCccc-----CCcchhccccccceeEccCCC--CccCCC
Q 040833 286 LTLLITLNFEENMLEGSIPSSLGK-CQNLISLNLS----NNNLSGT-----IPTEVIGLSSLSIYLDLSQNQ--LNGPLP 353 (503)
Q Consensus 286 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~l~~~L~l~~n~--l~~~~~ 353 (503)
+++|++|++..+.+++.....+.. +++|++|+++ .|.+++. .+..+..++++ +.|++++|. +++...
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHH
Confidence 677777777666666544444443 6777777775 3444421 12223344555 566665432 333322
Q ss_pred cchh-cCCCCCeEeCCCCccccc-CCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccccCccC-c
Q 040833 354 SNFG-ILKNLGAIDISENKLSGQ-IPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIPKYL-E 429 (503)
Q Consensus 354 ~~~~-~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~ 429 (503)
..+. .+++|++|++++|.+++. .+..+..+++|++|++++|.+++. .+.....+++|++|+|++|+++......+ .
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGG
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHH
Confidence 2222 255566666666655532 222334555666666666655432 22223445566666666666554322222 2
Q ss_pred CCCCCCeeecCC
Q 040833 430 NFPFLQNLNLSF 441 (503)
Q Consensus 430 ~~~~L~~L~l~~ 441 (503)
.+|.+....+..
T Consensus 536 ~~p~l~~~~~~~ 547 (592)
T 3ogk_B 536 ARPYWNIELIPS 547 (592)
T ss_dssp CCTTEEEEEECC
T ss_pred hCCCcEEEEecC
Confidence 344444444433
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.2e-29 Score=238.49 Aligned_cols=276 Identities=24% Similarity=0.267 Sum_probs=205.6
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc--CCccccCCCCCCEEEc
Q 040833 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR--IPGSIVDLYKLQRLAL 270 (503)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~~~~L~~L~l 270 (503)
+.++.+++.++ .+|.. +++++++|++++|.+....+..|..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45666666555 33332 234677777777777655445567777778888877776632 2445566777888888
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc
Q 040833 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN 349 (503)
Q Consensus 271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~ 349 (503)
++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++++ ++|++++|.+.
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccc
Confidence 8877763 44456777888888888887775544 467777888888888888776666667777777 78888888877
Q ss_pred c-CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccC
Q 040833 350 G-PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL 428 (503)
Q Consensus 350 ~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 428 (503)
+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 466778888999999999999998888889999999999999999997777788899999999999999998888888
Q ss_pred cCCC-CCCeeecCCCcCcccCCCCCc---cCCCCceeccCCCCCcccCCC
Q 040833 429 ENFP-FLQNLNLSFNHFEGEVPIKGV---FSNSSAISIDGNDNLCGGISE 474 (503)
Q Consensus 429 ~~~~-~L~~L~l~~n~l~~~~~~~~~---~~~l~~l~~~~n~~~c~~~~~ 474 (503)
..++ +|++|++++|++.+.++..++ +...+.+.+..+...|..+..
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 8885 899999999999987664333 344455566666667765443
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.9e-29 Score=234.59 Aligned_cols=248 Identities=22% Similarity=0.226 Sum_probs=168.7
Q ss_pred CCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc-CcccCCccccCCCCCCEEE
Q 040833 239 VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM-LEGSIPSSLGKCQNLISLN 317 (503)
Q Consensus 239 ~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~ 317 (503)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455555555555555444555555566666666665555555555566666666666665 5544455566666666666
Q ss_pred CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833 318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 397 (503)
+++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 66666665445555556666 66666666666555556777888888888888888666667888888888888888888
Q ss_pred ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCCCCCC
Q 040833 398 GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGISELHL 477 (503)
Q Consensus 398 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~~~~l 477 (503)
+..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.++..+....++.+....+...|..+.. +
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~--l 268 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR--L 268 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG--G
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH--h
Confidence 77788888888888888888888876666788888888999999988887776666666777777777777765433 2
Q ss_pred CCCCCCCccccc
Q 040833 478 STCSIKESKQSR 489 (503)
Q Consensus 478 s~~~~~~~~~~~ 489 (503)
.+-.+..+....
T Consensus 269 ~g~~l~~l~~~~ 280 (285)
T 1ozn_A 269 AGRDLKRLAAND 280 (285)
T ss_dssp TTCBGGGSCGGG
T ss_pred CCcChhhcCHHH
Confidence 333444444433
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=7e-29 Score=246.24 Aligned_cols=254 Identities=22% Similarity=0.263 Sum_probs=211.8
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271 (503)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 271 (503)
...++.++..+. .+|.. +++++++|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 455666666665 34432 34578888888888887777888888999999999998888777888888999999999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC-cCcccCCcchhccccccceeEccCCCCcc
Q 040833 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN-NLSGTIPTEVIGLSSLSIYLDLSQNQLNG 350 (503)
Q Consensus 272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~~L~l~~n~l~~ 350 (503)
+|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..++++ ++|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCcccc
Confidence 99888777777888899999999999988777778888999999999885 4443333457777777 899999998885
Q ss_pred CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcC
Q 040833 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN 430 (503)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 430 (503)
. + .+..+++|++|++++|.+++..+..|.++++|+.|++++|.+++..+..|.++++|++|+|++|+++...+..|..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 3 4778899999999999999888899999999999999999999888899999999999999999999888888999
Q ss_pred CCCCCeeecCCCcCcccCCCCC
Q 040833 431 FPFLQNLNLSFNHFEGEVPIKG 452 (503)
Q Consensus 431 ~~~L~~L~l~~n~l~~~~~~~~ 452 (503)
+++|+.|++++|++.+.+...+
T Consensus 289 l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp CTTCCEEECCSSCEECSTTTHH
T ss_pred ccCCCEEEccCCCcCCCCCchH
Confidence 9999999999999998877543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=9.3e-29 Score=244.46 Aligned_cols=255 Identities=24% Similarity=0.288 Sum_probs=209.4
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271 (503)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 271 (503)
...++.++..+. .+|..+ +++++.|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445666666665 344432 3578888888888887777788888888888888888887777788888888888888
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCc-CcccCCcchhccccccceeEccCCCCcc
Q 040833 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNN-LSGTIPTEVIGLSSLSIYLDLSQNQLNG 350 (503)
Q Consensus 272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~L~l~~n~l~~ 350 (503)
+|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..++++ ++|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCcc
Confidence 888887767778888889999998888887777788888899999998854 443334467777777 889999998874
Q ss_pred CCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcC
Q 040833 351 PLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN 430 (503)
Q Consensus 351 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 430 (503)
++ .+..+++|++|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|++|+|++|+++...+..|..
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 33 4778899999999999999888899999999999999999999888889999999999999999999888888899
Q ss_pred CCCCCeeecCCCcCcccCCCCCc
Q 040833 431 FPFLQNLNLSFNHFEGEVPIKGV 453 (503)
Q Consensus 431 ~~~L~~L~l~~n~l~~~~~~~~~ 453 (503)
+++|+.|++++|++.+.+...+.
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTHHH
T ss_pred ccCCCEEEcCCCCccCCCCchHH
Confidence 99999999999999988775443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=240.43 Aligned_cols=250 Identities=22% Similarity=0.234 Sum_probs=222.0
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
..+.++..+..+. .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888777 4455443 689999999999998888899999999999999999998888899999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCC-CCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQN-QLNGPLPSNFGILKNLGAIDISENKLSG 374 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 374 (503)
+|.++...+..+..+++|++|++++|.+....+..+..++++ ++|++++| .+....+..|..+++|++|++++|.++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL-RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc-CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 999997777789999999999999999997767788889998 99999995 565555667899999999999999998
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCc
Q 040833 375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGV 453 (503)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 453 (503)
.+| .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..+. ...
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 445 478899999999999999988899999999999999999999999999999999999999999999976653 455
Q ss_pred cCCCCceeccCCCCCccc
Q 040833 454 FSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 454 ~~~l~~l~~~~n~~~c~~ 471 (503)
+++|+.+++++|||.|+|
T Consensus 278 l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTCCEEECCSSCEECSS
T ss_pred ccCCCEEEcCCCCccCCC
Confidence 789999999999999987
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=4.6e-28 Score=240.34 Aligned_cols=251 Identities=21% Similarity=0.227 Sum_probs=222.0
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
....++.++..+. .+|..+. +++++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888887776 3454343 689999999999998888999999999999999999998888899999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccC-CCCccCCCcchhcCCCCCeEeCCCCcccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAIDISENKLSG 374 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 374 (503)
+|.+....+..+..+++|++|++++|.+....+..+..++++ +.|++++ +.+....+..|..+++|++|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 999998888889999999999999999996666788889999 9999998 45665556678899999999999999985
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCc
Q 040833 375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGV 453 (503)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 453 (503)
. | .+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|+.|++++|++++..+. ...
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 4 4 578899999999999999988899999999999999999999988899999999999999999999976653 455
Q ss_pred cCCCCceeccCCCCCcccC
Q 040833 454 FSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 454 ~~~l~~l~~~~n~~~c~~~ 472 (503)
+++|+.+++++||+.|+|-
T Consensus 289 l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCSSCEECSTT
T ss_pred ccCCCEEEccCCCcCCCCC
Confidence 7899999999999999873
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.3e-31 Score=275.77 Aligned_cols=405 Identities=12% Similarity=0.006 Sum_probs=268.0
Q ss_pred CcccCCCCCCCEEECCCCccc---cCCCccc------------cCCCCCCEEEcccceeeeeCCccccC-CCC-CcEEEc
Q 040833 33 PSSFGNLSSLEALSASANQFV---GQIPETL------------SQLKRMLYLLLGVNKLSGEIPFSIYN-LSS-LNYICV 95 (503)
Q Consensus 33 ~~~~~~l~~L~~L~l~~n~i~---~~~~~~~------------~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L~l 95 (503)
+..+..+++|++|+++++... +..|..+ ..+++|++|+|++|.+....+..+.. ++. |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 444567888999999775321 1222222 26788999999988776555555554 334 889998
Q ss_pred cCCCC-cccCchhhhcCCCCCCEEEccCCcccccC----CccccCCCCCCEEecccCcCcccC----CC-ccCCCCCcEE
Q 040833 96 PVNQL-QGSLPSDLGFTLPNLEVLNLCRNQFTGPI----PASISNASNLMRLVIAKNGFSGKV----PS-LKILHKLEWV 165 (503)
Q Consensus 96 ~~n~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~----~~-l~~l~~L~~L 165 (503)
++|.. .......+...+++|++|++++|.+++.. +.....+++|++|++++|.+.... +. +..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 88762 21112223334889999999988876542 234457888999999888776221 12 4567888888
Q ss_pred EcccccCCCCCCCCccccccccCCCCCCEEECcCCccc---ccCchhHhhccccCcEEEeeccccccccchhccCCCCCc
Q 040833 166 GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFG---GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLE 242 (503)
Q Consensus 166 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 242 (503)
++++|.+.. ....+..+++|++|+++..... ......+... ++++.+.++++... ..+..+..+++|+
T Consensus 226 ~L~~~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 226 KVGDFEILE-------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMGPN-EMPILFPFAAQIR 296 (592)
T ss_dssp ECSSCBGGG-------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCCTT-TGGGGGGGGGGCC
T ss_pred eccCccHHH-------HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccchh-HHHHHHhhcCCCc
Confidence 888876652 3455667788888888753222 1122233334 37888888775433 5566677788899
Q ss_pred EEEccCCcccccCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-----------CcCcccCC-ccccC
Q 040833 243 FLHLGGNQFTGRIP-GSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE-----------NMLEGSIP-SSLGK 309 (503)
Q Consensus 243 ~L~ls~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~-~~~~~ 309 (503)
+|++++|.+++... ..+..+++|+.|+++++......+..+..+++|++|++++ +.++.... .....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999888654322 3357788899999884322222333345678899999984 34443222 22345
Q ss_pred CCCCCEEECcCCcCcccCCcchhc-cccccceeEcc----CCCCccC-----CCcchhcCCCCCeEeCCCCc--ccccCC
Q 040833 310 CQNLISLNLSNNNLSGTIPTEVIG-LSSLSIYLDLS----QNQLNGP-----LPSNFGILKNLGAIDISENK--LSGQIP 377 (503)
Q Consensus 310 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~l~~n~--l~~~~~ 377 (503)
+++|++|++..+.+++..+..+.. ++++ +.|+++ .|.+++. .+..+..+++|++|++++|. +++..+
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 789999999888887666666655 6666 888886 5667643 22336678899999997654 554333
Q ss_pred ccc-cCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeeecCCCcCccc
Q 040833 378 SSI-GSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLNLSFNHFEGE 447 (503)
Q Consensus 378 ~~~-~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~ 447 (503)
..+ ..+++|++|++++|.+++. .+..+.++++|++|+|++|.+++. .+..+..+++|++|++++|+++..
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 333 3478899999999988753 345567889999999999988654 334456788899999999997753
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.4e-29 Score=237.26 Aligned_cols=258 Identities=17% Similarity=0.186 Sum_probs=181.7
Q ss_pred CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269 (503)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ 269 (503)
++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 3566666666666655444555554 677777777777665566677777777777777777755444567777777777
Q ss_pred ccCCcccccCC-ccccCCCCCCEEEccCCc-CcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833 270 LEGNKFWGEIP-SSIGNLTLLITLNFEENM-LEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 347 (503)
Q Consensus 270 l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~ 347 (503)
+++|.+.+... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..+..+..++++ ++|++++|.
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQ 209 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSC
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCc
Confidence 77777764443 356777777777777773 555556667777777777777777776667777777777 777777777
Q ss_pred CccCCCcchhcCCCCCeEeCCCCcccccCCccc---cCCCCCCEEECCCCcCcc----cCchhccCCCCCCEEeCCCCcc
Q 040833 348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSI---GSCTRLEQLVMNGNFFQG----NIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 348 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l 420 (503)
++......+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 764433344457788888888888775444332 235667888888887764 3567788899999999999999
Q ss_pred ccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 421 SGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 421 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+...+..|..+++|++|++++|++.+.+|
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 85555557889999999999999988776
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=238.45 Aligned_cols=279 Identities=18% Similarity=0.158 Sum_probs=234.6
Q ss_pred CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR 267 (503)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~ 267 (503)
.|+.....+.+++.++ .+|..+ ++++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3555667888888887 455533 358999999999999777778999999999999999999888888999999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCcccCC-ccccCCCCCCEEECcCC-cCcccCCcchhccccccceeEccC
Q 040833 268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIP-SSLGKCQNLISLNLSNN-NLSGTIPTEVIGLSSLSIYLDLSQ 345 (503)
Q Consensus 268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~~L~l~~ 345 (503)
|++++|.+++..+..+..+++|++|++++|.+..... ..+..+++|++|++++| .+.+..+..+..++.+ ++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCC
Confidence 9999999997666668999999999999999996555 57889999999999999 4665566788888888 9999999
Q ss_pred CCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhc---cCCCCCCEEeCCCCcccc
Q 040833 346 NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL---SSLRGIENLDLSRNNLSG 422 (503)
Q Consensus 346 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~ 422 (503)
|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+++
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 99998888999999999999999999975444455668999999999999987554443 346789999999998875
Q ss_pred ----ccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833 423 ----RIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 423 ----~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~ 471 (503)
.+|..+..+++|++|++++|+++..++. ...+++|+.+++++||+.|++
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 3566788999999999999999965554 366899999999999999976
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.4e-28 Score=227.28 Aligned_cols=251 Identities=22% Similarity=0.239 Sum_probs=216.6
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccC--CccccCCCCCCEEE
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEI--PSSIGNLTLLITLN 293 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~ 293 (503)
..+.++.+++.+.. +|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+.... +..+..+++|++|+
T Consensus 8 ~~~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCCEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 34678888888774 44433 368999999999999666667899999999999999987442 45667799999999
Q ss_pred ccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcc
Q 040833 294 FEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKL 372 (503)
Q Consensus 294 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 372 (503)
+++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 99999984 55568899999999999999985544 577888888 9999999999988888899999999999999999
Q ss_pred cc-cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-
Q 040833 373 SG-QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI- 450 (503)
Q Consensus 373 ~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 450 (503)
++ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 86 5788999999999999999999988889999999999999999999988777899999999999999999987663
Q ss_pred CCcc-CCCCceeccCCCCCccc
Q 040833 451 KGVF-SNSSAISIDGNDNLCGG 471 (503)
Q Consensus 451 ~~~~-~~l~~l~~~~n~~~c~~ 471 (503)
...+ ++|+.+++++|++.|+|
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSG
T ss_pred HHhhhccCCEEEccCCCeeccc
Confidence 3444 58999999999999975
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-27 Score=222.77 Aligned_cols=251 Identities=20% Similarity=0.214 Sum_probs=208.0
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccC
Q 040833 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEG 272 (503)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~ 272 (503)
++++.+++.+. .+|.. .++++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777776 33432 345889999999988877777788899999999999998877788889999999999999
Q ss_pred Cc-ccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833 273 NK-FWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351 (503)
Q Consensus 273 n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~ 351 (503)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence 97 776667888899999999999999987778888889999999999999986666667788888 8999999999877
Q ss_pred CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833 352 LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENF 431 (503)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 431 (503)
.+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++....+. ....
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHH
Confidence 667788999999999999999988899999999999999999999987778899999999999999999743221 1112
Q ss_pred CCCCeeecCCCcCcccCC
Q 040833 432 PFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 432 ~~L~~L~l~~n~l~~~~~ 449 (503)
..++.+....+.+.+..|
T Consensus 248 ~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp HHHHHCCSEECCCBEEES
T ss_pred HHHHhcccccCccccCCc
Confidence 335566677888887776
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.8e-27 Score=221.68 Aligned_cols=224 Identities=20% Similarity=0.283 Sum_probs=170.5
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
.++.|+++++.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. ..|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5666777776666 44555556667777777777666 55666666777777777777666 456666667777777777
Q ss_pred CCcCcccCCcccc---------CCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEe
Q 040833 296 ENMLEGSIPSSLG---------KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366 (503)
Q Consensus 296 ~n~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 366 (503)
+|.+.+..|..+. .+++|++|++++|.+. .+|..+..++.+ ++|++++|.+.+ ++..+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 7665555555443 4888888888888887 777778888877 888888888884 555688888888888
Q ss_pred CCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCc
Q 040833 367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 367 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888876655
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.5e-26 Score=218.87 Aligned_cols=225 Identities=24% Similarity=0.322 Sum_probs=189.7
Q ss_pred CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269 (503)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ 269 (503)
++++.|+++++.+. .+|..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 56777777777776 5566666664 7888888888777 66667777888888888888877 5677778888888888
Q ss_pred ccCCcccccCCcccc---------CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccce
Q 040833 270 LEGNKFWGEIPSSIG---------NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIY 340 (503)
Q Consensus 270 l~~n~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~ 340 (503)
+++|...+..|..+. .+++|++|++++|.+. ..|..+..+++|++|++++|.+. .+|..+..++++ ++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L-~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-EE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC-CE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC-CE
Confidence 888776666666554 4899999999999988 66777889999999999999998 567778888888 89
Q ss_pred eEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833 341 LDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 341 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 420 (503)
|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999888899999999999999999999889999999999999999999999999999999999999999998876
Q ss_pred c
Q 040833 421 S 421 (503)
Q Consensus 421 ~ 421 (503)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 5
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.2e-28 Score=227.13 Aligned_cols=248 Identities=21% Similarity=0.211 Sum_probs=188.1
Q ss_pred cCCCCCCEEECcCCcccccCchhHhhccccCcEEEeecccccc-ccchhcc-------CCCCCcEEEccCCcccccCCcc
Q 040833 187 VNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFG-NIPSGLR-------NLVNLEFLHLGGNQFTGRIPGS 258 (503)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~ls~n~~~~~~~~~ 258 (503)
...++|+.+++++|.+ .+|..+.. .++.|+++++.+.. ..+..+. ++++|++|++++|.+++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3446688888888887 55655543 37888888888743 3444343 6889999999999998777776
Q ss_pred c--cCCCCCCEEEccCCcccccCCccccCC-----CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCccc--CCc
Q 040833 259 I--VDLYKLQRLALEGNKFWGEIPSSIGNL-----TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGT--IPT 329 (503)
Q Consensus 259 ~--~~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~ 329 (503)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 8889999999999998866 6666655 8999999999999888878889999999999999987644 222
Q ss_pred ch--hccccccceeEccCCCCcc---CCCcchhcCCCCCeEeCCCCcccccCC-ccccCCCCCCEEECCCCcCcccCchh
Q 040833 330 EV--IGLSSLSIYLDLSQNQLNG---PLPSNFGILKNLGAIDISENKLSGQIP-SSIGSCTRLEQLVMNGNFFQGNIPSS 403 (503)
Q Consensus 330 ~~--~~~~~l~~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~ 403 (503)
.+ ..++.+ ++|++++|.+++ .....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..
T Consensus 194 ~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HSCTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 33 566777 888888888873 222334567888888888888886553 45566788888888888888 56665
Q ss_pred ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcc
Q 040833 404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55 7888888888888865 54 7888888888888888874
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1e-29 Score=261.87 Aligned_cols=427 Identities=15% Similarity=0.090 Sum_probs=208.9
Q ss_pred ccCCCCCCcEEEcccCcCCC---CCCcc------------cCCCCCCCEEECCCCccccCCCcccc-CCCCCCEEEcccc
Q 040833 11 KLGSLSKLRILAMHRNNLSG---EIPSS------------FGNLSSLEALSASANQFVGQIPETLS-QLKRMLYLLLGVN 74 (503)
Q Consensus 11 ~~~~~~~L~~L~l~~n~i~~---~~~~~------------~~~l~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n 74 (503)
.+..+++|++|+++++.... ..|.. +..+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 34567788888888764211 11111 23567788888877776655555553 5777888888777
Q ss_pred -eeeee-CCccccCCCCCcEEEccCCCCcccCchh---hhcCCCCCCEEEccCCc--ccc-cCCccccCCCCCCEEeccc
Q 040833 75 -KLSGE-IPFSIYNLSSLNYICVPVNQLQGSLPSD---LGFTLPNLEVLNLCRNQ--FTG-PIPASISNASNLMRLVIAK 146 (503)
Q Consensus 75 -~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~--~~~-~~~~~~~~~~~L~~L~l~~ 146 (503)
.+... ++..+.++++|++|++++|.+.+..+.. +...+++|++|++++|. ++. .+...+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 34321 3333446777778887777765433222 22246677777777765 211 1112233467777777777
Q ss_pred CcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCccccccccCCCCCCEE-ECcCCcccccCchhHhhccccCcEEEeec
Q 040833 147 NGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELL-QISDNNFGGMLPEAVGNLSTRLRILIVGN 224 (503)
Q Consensus 147 n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 224 (503)
|......+. +..+++|++|+++.+...............+..+++|+.+ .+.+... ..++..+...+ +|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~-~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS-RLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT-TCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhC-CCCEEEccC
Confidence 632222222 5566777777765443210000000222345666677776 3332221 12333333333 677777777
Q ss_pred ccccccc-chhccCCCCCcEEEccCCccccc-CCccccCCCCCCEEEccC---------CcccccCCccc-cCCCCCCEE
Q 040833 225 NQLFGNI-PSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQRLALEG---------NKFWGEIPSSI-GNLTLLITL 292 (503)
Q Consensus 225 ~~~~~~~-~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~L~l~~---------n~~~~~~~~~~-~~~~~L~~L 292 (503)
|.+.+.. ...+..+++|++|++++| +... .+.....+++|++|++.+ +.+++.....+ ..+++|++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 7654322 222456677777777766 3211 111222456677776633 22222111112 235666666
Q ss_pred EccCCcCcccCCcccc-CCCCCCEEECc--C----CcCccc-----CCcchhccccccceeEccCCCCccCCCcchhc-C
Q 040833 293 NFEENMLEGSIPSSLG-KCQNLISLNLS--N----NNLSGT-----IPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI-L 359 (503)
Q Consensus 293 ~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~-----~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~-~ 359 (503)
.+..+.+++.....+. .+++|++|+++ + +.+++. .+..+..++++ +.|++++ .+++.....+.. +
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-SCCHHHHHHHHHHC
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-cccHHHHHHHHHhc
Confidence 6655555543333332 35666666666 2 233210 01112333444 5555544 333332223332 4
Q ss_pred CCCCeEeCCCCcccccCCccc-cCCCCCCEEECCCCcCcccCch-hccCCCCCCEEeCCCCccccccCccC-cCCCCCCe
Q 040833 360 KNLGAIDISENKLSGQIPSSI-GSCTRLEQLVMNGNFFQGNIPS-SLSSLRGIENLDLSRNNLSGRIPKYL-ENFPFLQN 436 (503)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~ 436 (503)
++|++|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|++|++++|+++......+ ..+|.|+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 555555555555543322222 3355555555555555432222 22334555555555555533222222 33444444
Q ss_pred eecCCC
Q 040833 437 LNLSFN 442 (503)
Q Consensus 437 L~l~~n 442 (503)
..+..+
T Consensus 536 ~~~~~~ 541 (594)
T 2p1m_B 536 EVIDER 541 (594)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 444433
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6e-27 Score=220.90 Aligned_cols=257 Identities=18% Similarity=0.166 Sum_probs=167.6
Q ss_pred CCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 192 LELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALE 271 (503)
Q Consensus 192 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~ 271 (503)
++..+++.+.+.......+.. ++++++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344455555544332233333 2367777777777776666667777777777777777764433 6677777777777
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC
Q 040833 272 GNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP 351 (503)
Q Consensus 272 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~ 351 (503)
+|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcc
Confidence 77766332 236777777777777655433 25667777777777776556666667777 7777777777765
Q ss_pred CCcch-hcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcC
Q 040833 352 LPSNF-GILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLEN 430 (503)
Q Consensus 352 ~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 430 (503)
.+..+ ..+++|++|++++|.+++.. ....+++|++|++++|.+++. +..+..+++|++|++++|+++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 55554 35777888888888777542 223467788888888877743 444777788888888888877 45666777
Q ss_pred CCCCCeeecCCCcCccc-CC-CCCccCCCCceeccC
Q 040833 431 FPFLQNLNLSFNHFEGE-VP-IKGVFSNSSAISIDG 464 (503)
Q Consensus 431 ~~~L~~L~l~~n~l~~~-~~-~~~~~~~l~~l~~~~ 464 (503)
+++|+.|++++|++.+. .+ ....++.++.+++.+
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77888888888887732 22 223345556666653
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-27 Score=220.99 Aligned_cols=243 Identities=20% Similarity=0.221 Sum_probs=203.9
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
.++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555566666655555566778899999999999998877889999999999999999986554 8899999999999
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 375 (503)
+|.+.+.. ..++|++|++++|.+.+..+.. ++.+ ++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSC-EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCC-CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99988443 3489999999999998654443 4556 9999999999988787889999999999999999977
Q ss_pred CCccc-cCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCcc
Q 040833 376 IPSSI-GSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVF 454 (503)
Q Consensus 376 ~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 454 (503)
.+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++. +..+..+++|++|++++|++++.++....+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 66666 4789999999999999855 33 33589999999999999955 445889999999999999999776666778
Q ss_pred CCCCceeccCCCCCcccC
Q 040833 455 SNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 455 ~~l~~l~~~~n~~~c~~~ 472 (503)
++|+.+++++|++.|+++
T Consensus 237 ~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp TTCCEEECTTCCCBHHHH
T ss_pred CCCCEEEccCCCccCcCH
Confidence 999999999999998765
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.6e-29 Score=256.98 Aligned_cols=398 Identities=14% Similarity=0.077 Sum_probs=280.0
Q ss_pred CCCCCCcEEEcccCcCCCCCCcccC-CCCCCCEEECCCC-ccccC-CCccccCCCCCCEEEcccceeeeeCCccc----c
Q 040833 13 GSLSKLRILAMHRNNLSGEIPSSFG-NLSSLEALSASAN-QFVGQ-IPETLSQLKRMLYLLLGVNKLSGEIPFSI----Y 85 (503)
Q Consensus 13 ~~~~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~ 85 (503)
..+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+....+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 5789999999999998876666665 6899999999999 55432 34445689999999999999875444333 3
Q ss_pred CCCCCcEEEccCCC--CcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCc-------CcccCCCc
Q 040833 86 NLSSLNYICVPVNQ--LQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNG-------FSGKVPSL 156 (503)
Q Consensus 86 ~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-------~~~~~~~l 156 (503)
.+++|++|+++++. +.......+...+++|++|++++|.....++..+..+++|++|++..+. +.+..+.+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 77899999999986 3222223333347999999999984333477778899999999976553 22323346
Q ss_pred cCCCCCcEE-EcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchh-HhhccccCcEEEeeccccccc-cch
Q 040833 157 KILHKLEWV-GISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEA-VGNLSTRLRILIVGNNQLFGN-IPS 233 (503)
Q Consensus 157 ~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~ 233 (503)
..+++|+.+ .+..... ..+...+..+++|++|++++|.+.+..... +... ++|++|++++| +.+. .+.
T Consensus 262 ~~~~~L~~Ls~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~-~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC-PKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HTCTTCCEEECCBTCCG-------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC-TTCCEEEEEGG-GHHHHHHH
T ss_pred hcCCCcccccCCcccch-------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC-CCcCEEeCcCc-cCHHHHHH
Confidence 788899988 3332211 123333446789999999999876443333 3344 48999999998 4332 233
Q ss_pred hccCCCCCcEEEccC---------CcccccCCccc-cCCCCCCEEEccCCcccccCCcccc-CCCCCCEEEcc--C----
Q 040833 234 GLRNLVNLEFLHLGG---------NQFTGRIPGSI-VDLYKLQRLALEGNKFWGEIPSSIG-NLTLLITLNFE--E---- 296 (503)
Q Consensus 234 ~~~~~~~L~~L~ls~---------n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~--~---- 296 (503)
....+++|++|++++ +.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 334689999999944 34443222223 3478999999988888765544443 58999999999 3
Q ss_pred CcCcccC-----CccccCCCCCCEEECcCCcCcccCCcchhc-cccccceeEccCCCCccCCCcch-hcCCCCCeEeCCC
Q 040833 297 NMLEGSI-----PSSLGKCQNLISLNLSNNNLSGTIPTEVIG-LSSLSIYLDLSQNQLNGPLPSNF-GILKNLGAIDISE 369 (503)
Q Consensus 297 n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~ 369 (503)
+.++... +..+..+++|++|++++ .+++.....+.. ++.+ +.|++++|.+++.....+ ..+++|++|++++
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L-~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM-EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC-CEEEEESCCSSHHHHHHHHHHCTTCCEEEEES
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc-cEeeccCCCCcHHHHHHHHhcCCCcCEEECcC
Confidence 3444221 12256789999999987 666555555555 6666 999999999976554444 6689999999999
Q ss_pred CcccccCCc-cccCCCCCCEEECCCCcCcccCchhc-cCCCCCCEEeCCCCccc
Q 040833 370 NKLSGQIPS-SIGSCTRLEQLVMNGNFFQGNIPSSL-SSLRGIENLDLSRNNLS 421 (503)
Q Consensus 370 n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~ 421 (503)
|.+++.... .+..+++|+.|++++|+++......+ ..+++|+...+..+.-.
T Consensus 491 n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 491 CPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp CSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 999754433 44568999999999999975544445 56788887777766543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=230.10 Aligned_cols=242 Identities=19% Similarity=0.163 Sum_probs=188.3
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 78888888888877777778888888888888888875544 778888888888888877443 23788888888
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchh-cCCCCCeEeCCCCcccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFG-ILKNLGAIDISENKLSG 374 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~ 374 (503)
+|.+.+..+. .+++|++|++++|.+.+..|..+..++.+ +.|++++|.+++..+..+. .+++|++|++++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 8888765543 35788899999998887777778888888 8899999998877777665 68899999999999886
Q ss_pred cCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc-CC-CCC
Q 040833 375 QIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE-VP-IKG 452 (503)
Q Consensus 375 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~ 452 (503)
..+ +..+++|+.|+|++|.+++.. ..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+. .| ...
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 533 335889999999999998654 448888999999999999984 566788889999999999998843 22 233
Q ss_pred ccCCCCceecc-------CCCCCcccC
Q 040833 453 VFSNSSAISID-------GNDNLCGGI 472 (503)
Q Consensus 453 ~~~~l~~l~~~-------~n~~~c~~~ 472 (503)
.++.++.+++. .+++.|.+.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred hCCCCcEEeccccccccCCCcccccCC
Confidence 45566666665 778888664
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.2e-25 Score=206.13 Aligned_cols=211 Identities=20% Similarity=0.194 Sum_probs=139.1
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS 319 (503)
Q Consensus 240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 319 (503)
++++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455555555555555555555555555555666666666
Q ss_pred CCcCcccCCcchhccccccceeEccCCCCccC-CCcchhcCCCCCeEeCCCCcccccCCccccCCCCCC----EEECCCC
Q 040833 320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP-LPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLE----QLVMNGN 394 (503)
Q Consensus 320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~----~L~L~~n 394 (503)
+|.+.+..+..+..++.+ ++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 665554433345555555 5666666666542 466677788888888888888876666666666666 8899999
Q ss_pred cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCC
Q 040833 395 FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKG 452 (503)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 452 (503)
.+++..+..+.. .+|++|++++|++++..+..|..+++|++|++++|++.+.++...
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 888665555543 489999999999987777778889999999999999998877543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.1e-26 Score=228.39 Aligned_cols=246 Identities=20% Similarity=0.201 Sum_probs=207.9
Q ss_pred CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR 267 (503)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~ 267 (503)
.+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCE
Confidence 345899999999999987788888886 89999999999886554 889999999999999988532 3389999
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchh-ccccccceeEccCC
Q 040833 268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVI-GLSSLSIYLDLSQN 346 (503)
Q Consensus 268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~~L~l~~n 346 (503)
|++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .++.+ +.|++++|
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCC
Confidence 99999999866544 468899999999999988888899999999999999999987787776 67777 99999999
Q ss_pred CCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc-cccC
Q 040833 347 QLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS-GRIP 425 (503)
Q Consensus 347 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 425 (503)
.+++..+ +..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +..|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 9986632 3458999999999999996544 58899999999999999994 6778999999999999999998 5567
Q ss_pred ccCcCCCCCCeeecC-------CCcCcccCC
Q 040833 426 KYLENFPFLQNLNLS-------FNHFEGEVP 449 (503)
Q Consensus 426 ~~~~~~~~L~~L~l~-------~n~l~~~~~ 449 (503)
..+..++.|+.++++ .++..+..+
T Consensus 256 ~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 778888999999986 555555444
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.9e-24 Score=198.89 Aligned_cols=206 Identities=22% Similarity=0.253 Sum_probs=150.5
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS 319 (503)
Q Consensus 240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 319 (503)
..+.++++++.++. +|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35566666666652 333332 456666666666665555566666677777777666665555556666777777777
Q ss_pred CCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc
Q 040833 320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399 (503)
Q Consensus 320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 399 (503)
+|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 776664444455566666 6777777777766666677888899999999988866666788889999999999998877
Q ss_pred CchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 400 IPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 400 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
.+..|..+++|++|++++|+++...+..|..+++|+.|++++|++.+.++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77778888999999999999987777778888999999999999988775
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.3e-24 Score=201.74 Aligned_cols=207 Identities=22% Similarity=0.221 Sum_probs=170.0
Q ss_pred ccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 040833 235 LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI 314 (503)
Q Consensus 235 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 314 (503)
+..++++++++++++.++. +|..+. +.++.|++++|.+++..+..|..+++|++|++++|.++...+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 5677889999999998884 444443 6899999999999887788889999999999999998865443 6788999
Q ss_pred EEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833 315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394 (503)
Q Consensus 315 ~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 394 (503)
+|++++|.+. .+|..+..++.+ ++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999987 677777778888 88899999888777777888888889999888888777777788888888999888
Q ss_pred cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 395 FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
++++..+..|..+++|++|++++|+++ .+|..+...++|+.+++++|++.+.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 888666667788888888898888888 556666677788888888888887664
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1e-24 Score=201.69 Aligned_cols=224 Identities=21% Similarity=0.198 Sum_probs=191.4
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833 244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323 (503)
Q Consensus 244 L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (503)
++-.+..+. ..|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 3444443 5799999999999988777899999999999999999988888899999999999999999
Q ss_pred cccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc-CCccccCCCCCCEEECCCCcCcccCch
Q 040833 324 SGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ-IPSSIGSCTRLEQLVMNGNFFQGNIPS 402 (503)
Q Consensus 324 ~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~ 402 (503)
.+..+..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+.
T Consensus 89 ~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSL-QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTC-CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccc-cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 97777888899999 9999999999987777799999999999999999864 588999999999999999999987777
Q ss_pred hccCCCCCC----EEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833 403 SLSSLRGIE----NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 403 ~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
.+..+++|+ +|++++|+++...+..+.. .+|++|++++|.+++..+. ...+++|+.+++++||+.|+|.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 777777777 8999999999776666654 4899999999999976653 3568899999999999999763
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.7e-24 Score=215.68 Aligned_cols=268 Identities=25% Similarity=0.329 Sum_probs=185.9
Q ss_pred CCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEEEc
Q 040833 16 SKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYICV 95 (503)
Q Consensus 16 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l 95 (503)
.++++|++++|.++ .+|..+. ++|++|++++|.+.. +|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35889999999998 6677665 789999999998884 454 5688999999999987 4554 6788999999
Q ss_pred cCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcccccCCCC
Q 040833 96 PVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNHLGNG 175 (503)
Q Consensus 96 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 175 (503)
++|.+. .+|. .+++|+.|++++|.++ .+|.. +++|++|++++|.+..... ...+|+.|++++|.++..
T Consensus 109 s~N~l~-~l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLT-HLPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCC-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCC-CCCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCC
Confidence 999887 5665 3788999999999887 35543 4788888888888765432 346778888888777642
Q ss_pred CCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccC
Q 040833 176 KKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRI 255 (503)
Q Consensus 176 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 255 (503)
. ..+++|+.|++++|.+.+ +|. .+++|+.|.+++|.+.. ++. .+++|++|++++|.+++ +
T Consensus 177 ~----------~~~~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 177 P----------MLPSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp C----------CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred c----------ccCCCCcEEECCCCCCCC-CCC----ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-C
Confidence 2 234677778887777764 222 12467777777777663 222 23667777777777664 3
Q ss_pred CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhcc
Q 040833 256 PGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGL 334 (503)
Q Consensus 256 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 334 (503)
| ..+++|+.|++++|.++. .|. .+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..+..+..+
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 3 344667777777777663 232 4566777777777776 445566667777777777777765555544443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3e-24 Score=197.58 Aligned_cols=205 Identities=20% Similarity=0.203 Sum_probs=181.3
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEc
Q 040833 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDL 343 (503)
Q Consensus 264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l 343 (503)
..+.++++++.++. .|..+. +.+++|++++|.+....+..+..+++|++|++++|.+....+..+..++.+ ++|++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L-~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL-ETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC-CEEEC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC-CEEEC
Confidence 57899999999984 454443 689999999999998877889999999999999999985555556778888 99999
Q ss_pred cCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc
Q 040833 344 SQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR 423 (503)
Q Consensus 344 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 423 (503)
++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99999987777889999999999999999988888899999999999999999977777799999999999999999988
Q ss_pred cCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833 424 IPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 424 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
.+..|..+++|++|++++|++++..+. ...+++|+.+++++||+.|+|-
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 888899999999999999999976653 4557899999999999999863
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-26 Score=218.42 Aligned_cols=244 Identities=22% Similarity=0.242 Sum_probs=198.3
Q ss_pred ccCcEEEeeccccccccchhccCCCCCcEEEccCCccc-ccCCcccc-------CCCCCCEEEccCCcccccCCccc--c
Q 040833 215 TRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFT-GRIPGSIV-------DLYKLQRLALEGNKFWGEIPSSI--G 284 (503)
Q Consensus 215 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~--~ 284 (503)
.+++.+++++|.+ ..|..+... |+.|++++|.+. ...+..+. .+++|++|++++|.+++..|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3789999999988 455544433 889999999884 34454444 68999999999999998777765 8
Q ss_pred CCCCCCEEEccCCcCcccCCccccCC-----CCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccC--CCcc--
Q 040833 285 NLTLLITLNFEENMLEGSIPSSLGKC-----QNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGP--LPSN-- 355 (503)
Q Consensus 285 ~~~~L~~L~l~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~--~~~~-- 355 (503)
.+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..++++ ++|++++|.+.+. .+..
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL-STLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC-CEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC-CEEECCCCCcCcchHHHHHHH
Confidence 999999999999999976 6666665 899999999999997777889999999 9999999997653 2222
Q ss_pred hhcCCCCCeEeCCCCcccc---cCCccccCCCCCCEEECCCCcCcccCc-hhccCCCCCCEEeCCCCccccccCccCcCC
Q 040833 356 FGILKNLGAIDISENKLSG---QIPSSIGSCTRLEQLVMNGNFFQGNIP-SSLSSLRGIENLDLSRNNLSGRIPKYLENF 431 (503)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 431 (503)
+..+++|++|++++|.+++ .....+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 3788999999999999983 222345678999999999999997664 55667899999999999999 5566555
Q ss_pred CCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCC
Q 040833 432 PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNL 468 (503)
Q Consensus 432 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~ 468 (503)
++|++|++++|++++. |....+++|+.+++++|+..
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence 8999999999999977 55677888889999888754
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.7e-23 Score=212.77 Aligned_cols=182 Identities=28% Similarity=0.287 Sum_probs=84.6
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
+|+.|++++|.+.. +|. .+++|++|++++|.+++. |. .+++|+.|++++|.++.. | ..+++|+.|+++
T Consensus 122 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 122 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVS 189 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECC
T ss_pred CcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECC
Confidence 44444444444442 121 124555555555555422 21 233455555555555432 2 234555555555
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 375 (503)
+|.+.+. +. ..++|+.|++++|.+. .+|.. .+++ +.|++++|.+++ ++ ..+++|++|++++|.++ .
T Consensus 190 ~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L-~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~ 255 (622)
T 3g06_A 190 DNQLASL-PT---LPSELYKLWAYNNRLT-SLPAL---PSGL-KELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-S 255 (622)
T ss_dssp SSCCSCC-CC---CCTTCCEEECCSSCCS-SCCCC---CTTC-CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-C
T ss_pred CCCCCCC-CC---ccchhhEEECcCCccc-ccCCC---CCCC-CEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-c
Confidence 5555532 11 1245555555555554 22221 1223 455555555543 22 22345555555555554 2
Q ss_pred CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc
Q 040833 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY 427 (503)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 427 (503)
+|. .+++|+.|++++|.++ .+|..+..+++|+.|+|++|++++..+..
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 332 3445555555555555 34455555555555555555555444433
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.5e-24 Score=196.15 Aligned_cols=197 Identities=21% Similarity=0.233 Sum_probs=92.3
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
++++++++++.+.. +|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 44555555544442 222221 3445555555555444444445555555555555554433221 344555555555
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 375 (503)
+|.+. ..+..+..+++|++|++++|++++..+..+..++.+ ++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 55544 233344445555555555555543333444444444 4555555555544444444455555555555555433
Q ss_pred CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 420 (503)
.+..|..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 3334444555555555555554 3334444444555555555544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=7.2e-23 Score=188.48 Aligned_cols=202 Identities=25% Similarity=0.273 Sum_probs=139.6
Q ss_pred cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833 236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS 315 (503)
Q Consensus 236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 315 (503)
..+++|+.|+++++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4456677777777766532 2456667777777777776642 35666777777777777777666666677777777
Q ss_pred EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395 (503)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 395 (503)
|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 7777777765444555566666 667777776665555556677778888888887776666667777788888888888
Q ss_pred CcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 396 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+++..+..+..+++|++|++++|++.. .+++|+.+++..|.+.+..|
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 777666667777888888888887652 34567778888887777666
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.5e-24 Score=205.92 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=153.2
Q ss_pred EECcCCcccccCchhHhhccccCcEEEeeccccccccc----hhccCCC-CCcEEEccCCcccccCCccccCC-----CC
Q 040833 195 LQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP----SGLRNLV-NLEFLHLGGNQFTGRIPGSIVDL-----YK 264 (503)
Q Consensus 195 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~~-----~~ 264 (503)
.+++++.+.+..|..+ ..+.++++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3455555554444433 233356666666666655444 4555566 67777777776665544444443 66
Q ss_pred CCEEEccCCcccccCCcc----ccCC-CCCCEEEccCCcCcccCCccc----cC-CCCCCEEECcCCcCcccCCc----c
Q 040833 265 LQRLALEGNKFWGEIPSS----IGNL-TLLITLNFEENMLEGSIPSSL----GK-CQNLISLNLSNNNLSGTIPT----E 330 (503)
Q Consensus 265 L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~l~~n~~~~~~~~----~ 330 (503)
|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+ .. +++|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777766544432 3333 677777777777765444332 23 35777777777777643332 2
Q ss_pred hhccc-cccceeEccCCCCccCCCcchh----cC-CCCCeEeCCCCccccc----CCccccC-CCCCCEEECCCCcCccc
Q 040833 331 VIGLS-SLSIYLDLSQNQLNGPLPSNFG----IL-KNLGAIDISENKLSGQ----IPSSIGS-CTRLEQLVMNGNFFQGN 399 (503)
Q Consensus 331 ~~~~~-~l~~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~L~L~~n~l~~~ 399 (503)
+...+ .+ ++|++++|.+++..+..+. .+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++.
T Consensus 162 l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 LAAIPANV-NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HhcCCccc-cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 33344 44 7777777777765544333 33 5788888888887752 3334444 45788888888888765
Q ss_pred Cc----hhccCCCCCCEEeCCCCccccc-------cCccCcCCCCCCeeecCCCcCccc
Q 040833 400 IP----SSLSSLRGIENLDLSRNNLSGR-------IPKYLENFPFLQNLNLSFNHFEGE 447 (503)
Q Consensus 400 ~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~~~~L~~L~l~~n~l~~~ 447 (503)
.+ ..+..+++|++|++++|.+... .+..+..+++|+.||+++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 44 3346678888888888874322 334566777888888888887755
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.1e-23 Score=184.18 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=98.2
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEEccC-CcCcccCCccccCCCCCCEEE
Q 040833 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNK-FWGEIPSSIGNLTLLITLNFEE-NMLEGSIPSSLGKCQNLISLN 317 (503)
Q Consensus 240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 317 (503)
++++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44555555555444444444445555555555553 4434344445555555555554 445444444445555555555
Q ss_pred CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCC---eEeCCCC-cccccCCccccCCCCCC-EEECC
Q 040833 318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLG---AIDISEN-KLSGQIPSSIGSCTRLE-QLVMN 392 (503)
Q Consensus 318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~~~L~-~L~L~ 392 (503)
+++|.+.+ +|. |..+++|+ +|++++| .+++..+..|..+++|+ .|+++
T Consensus 112 l~~n~l~~-lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKM-FPD--------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCS-CCC--------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCcc-ccc--------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 55554442 222 33333343 5555555 55544444555555555 55555
Q ss_pred CCcCcccCchhccCCCCCCEEeCCCCc-cccccCccCcCC-CCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833 393 GNFFQGNIPSSLSSLRGIENLDLSRNN-LSGRIPKYLENF-PFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN 465 (503)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n 465 (503)
+|.++...+..|.. ++|++|++++|+ ++...+..|..+ ++|+.|++++|++++..+ ..+++++.|++.++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--TTCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--hHhccCceeeccCc
Confidence 55555333333333 556666666663 554445555555 566666666666554333 14555666655544
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=7.7e-23 Score=192.21 Aligned_cols=201 Identities=22% Similarity=0.223 Sum_probs=121.4
Q ss_pred CCCcEEEccCCcccccCCccc--cCCCCCCEEEccCCcccccCC----ccccCCCCCCEEEccCCcCcccCCccccCCCC
Q 040833 239 VNLEFLHLGGNQFTGRIPGSI--VDLYKLQRLALEGNKFWGEIP----SSIGNLTLLITLNFEENMLEGSIPSSLGKCQN 312 (503)
Q Consensus 239 ~~L~~L~ls~n~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 312 (503)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345666666665555555554 555666666666666554322 22335666666666666666555566666666
Q ss_pred CCEEECcCCcCccc--C--CcchhccccccceeEccCCCCccCCCc----chhcCCCCCeEeCCCCcccccCCccccCC-
Q 040833 313 LISLNLSNNNLSGT--I--PTEVIGLSSLSIYLDLSQNQLNGPLPS----NFGILKNLGAIDISENKLSGQIPSSIGSC- 383 (503)
Q Consensus 313 L~~L~l~~n~~~~~--~--~~~~~~~~~l~~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~- 383 (503)
|++|++++|++.+. . +..+..++.+ ++|++++|.++.. +. .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAI-QNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCC-CSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCC-CEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 66666666665421 1 1222344455 5666666666421 11 24566777777777777776656555555
Q ss_pred --CCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcc
Q 040833 384 --TRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 384 --~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 57777777777777 4455443 6777777777777743 22 5667777777777777763
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.6e-23 Score=184.02 Aligned_cols=175 Identities=16% Similarity=0.137 Sum_probs=121.5
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEECcCCc-CcccCCcchhccccccceeEccC-CCCccCCCcchhcCCCCCeE
Q 040833 288 LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNN-LSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAI 365 (503)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~~~~~~~L~~L 365 (503)
++++|++++|.+++..+..+..+++|++|++++|+ +....+..+..++++ ++|++++ |.++...+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L-~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV-THIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC-CEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC-cEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 44455555555444444444455555555555554 443333344445555 5555555 55554555667788999999
Q ss_pred eCCCCcccccCCccccCCCCCC---EEECCCC-cCcccCchhccCCCCCC-EEeCCCCccccccCccCcCCCCCCeeecC
Q 040833 366 DISENKLSGQIPSSIGSCTRLE---QLVMNGN-FFQGNIPSSLSSLRGIE-NLDLSRNNLSGRIPKYLENFPFLQNLNLS 440 (503)
Q Consensus 366 ~l~~n~l~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 440 (503)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|+++...+..|.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 555 88888888 9999999 99877777899999999 9999999999666666666 899999999
Q ss_pred CCc-CcccCCC-CCcc-CCCCceeccCCC
Q 040833 441 FNH-FEGEVPI-KGVF-SNSSAISIDGND 466 (503)
Q Consensus 441 ~n~-l~~~~~~-~~~~-~~l~~l~~~~n~ 466 (503)
+|+ ++...+. ...+ ++|+.+++++|+
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 995 8866542 3344 677777776653
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4.1e-24 Score=207.58 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=153.1
Q ss_pred chhHhhccccCcEEEeeccccccccc----hhccCCCCCcEEEccCCcc---cccCCcc-------ccCCCCCCEEEccC
Q 040833 207 PEAVGNLSTRLRILIVGNNQLFGNIP----SGLRNLVNLEFLHLGGNQF---TGRIPGS-------IVDLYKLQRLALEG 272 (503)
Q Consensus 207 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~ls~n~~---~~~~~~~-------~~~~~~L~~L~l~~ 272 (503)
+..+...+ +|++|++++|.+....+ ..+..+++|++|++++|.+ .+..|.. +..+++|++|++++
T Consensus 25 ~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33444443 55666666555544322 2345566666666666532 2222322 25666777777777
Q ss_pred Ccccc----cCCccccCCCCCCEEEccCCcCcccCCccc----cCC---------CCCCEEECcCCcCcc-cCC---cch
Q 040833 273 NKFWG----EIPSSIGNLTLLITLNFEENMLEGSIPSSL----GKC---------QNLISLNLSNNNLSG-TIP---TEV 331 (503)
Q Consensus 273 n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~---------~~L~~L~l~~n~~~~-~~~---~~~ 331 (503)
|.+.+ ..+..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|++.. ..+ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 76664 234455666777777777777653332222 222 677777777777752 222 244
Q ss_pred hccccccceeEccCCCCcc-----CCCcchhcCCCCCeEeCCCCccc----ccCCccccCCCCCCEEECCCCcCccc---
Q 040833 332 IGLSSLSIYLDLSQNQLNG-----PLPSNFGILKNLGAIDISENKLS----GQIPSSIGSCTRLEQLVMNGNFFQGN--- 399 (503)
Q Consensus 332 ~~~~~l~~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~--- 399 (503)
..++.+ ++|++++|.++. ..+..+..+++|++|++++|.++ ..++..+..+++|++|+|++|.+++.
T Consensus 184 ~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 184 QSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 455666 777777777763 22225667888888888888885 45666778888888888888888754
Q ss_pred -Cchhcc--CCCCCCEEeCCCCcccc----ccCccC-cCCCCCCeeecCCCcCcccCC
Q 040833 400 -IPSSLS--SLRGIENLDLSRNNLSG----RIPKYL-ENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 400 -~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~l~~~~~ 449 (503)
++..+. .+++|++|+|++|.++. .++..+ .++++|++|++++|++++..+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 455553 37888999999888886 355555 567888999999888886553
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=8.6e-22 Score=181.27 Aligned_cols=211 Identities=22% Similarity=0.184 Sum_probs=176.7
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC
Q 040833 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321 (503)
Q Consensus 242 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 321 (503)
..+++..+.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTS
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCC
Confidence 3445555554432 3455778999999999998743 3578899999999999999853 47889999999999999
Q ss_pred cCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCc
Q 040833 322 NLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIP 401 (503)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 401 (503)
.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 96 ~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNL-KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp CCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccCccChhHhcCCcCC-CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 9997666777888888 999999999998777778999999999999999997777778999999999999999998877
Q ss_pred hhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCC
Q 040833 402 SSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGN 465 (503)
Q Consensus 402 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n 465 (503)
..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+.+| +++.+++.+|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n 232 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWIN 232 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHH
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHH
Confidence 788999999999999999998888889999999999999999997665 4555555443
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1e-21 Score=178.63 Aligned_cols=159 Identities=23% Similarity=0.233 Sum_probs=104.6
Q ss_pred CCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeC
Q 040833 288 LLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDI 367 (503)
Q Consensus 288 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 367 (503)
.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEECCCCcccccChhHhcccCCCCEEEc
Confidence 34444444444443333344444444444444444443333334444444 45555555555444455667778888888
Q ss_pred CCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc
Q 040833 368 SENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE 447 (503)
Q Consensus 368 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 447 (503)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88888766666677888888888888888866666788888888888888888877777788888888888888888876
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.7e-23 Score=199.48 Aligned_cols=250 Identities=19% Similarity=0.253 Sum_probs=171.6
Q ss_pred CCCEEECcCCcccccCchhHhhc-cccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc-CCccccCCCCCCEE
Q 040833 191 RLELLQISDNNFGGMLPEAVGNL-STRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQRL 268 (503)
Q Consensus 191 ~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~L 268 (503)
.++.++++++.+. +..+..+ .+.++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677777777655 3344443 13788888888877755444 45678888888888877654 55667777888888
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCC-cCccc-CCccccCCCCCCEEECcCC-cCccc-CCcchhccc-cccceeEc
Q 040833 269 ALEGNKFWGEIPSSIGNLTLLITLNFEEN-MLEGS-IPSSLGKCQNLISLNLSNN-NLSGT-IPTEVIGLS-SLSIYLDL 343 (503)
Q Consensus 269 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~l~~~L~l 343 (503)
++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ ++ ++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence 88888777666667777888888888888 45542 4445667788888888888 77643 455566677 66 78888
Q ss_pred cCC--CCc-cCCCcchhcCCCCCeEeCCCCc-ccccCCccccCCCCCCEEECCCCc-CcccCchhccCCCCCCEEeCCCC
Q 040833 344 SQN--QLN-GPLPSNFGILKNLGAIDISENK-LSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENLDLSRN 418 (503)
Q Consensus 344 ~~n--~l~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 418 (503)
++| .++ ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 887 444 2344556678888888888887 666666677778888888888884 33333335677888888888888
Q ss_pred ccccccCccCcCC-CCCCeeecCCCcCcccCC
Q 040833 419 NLSGRIPKYLENF-PFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 419 ~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~ 449 (503)
+.. +.+..+ .+++.|++++|.+++..|
T Consensus 283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 283 -VPD---GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp -SCT---TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred -cCH---HHHHHHHhhCcceEEecccCccccC
Confidence 432 223333 236667788888887665
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.1e-23 Score=202.37 Aligned_cols=250 Identities=16% Similarity=0.152 Sum_probs=193.0
Q ss_pred EEEeeccccccccchhccCCCCCcEEEccCCcccccCC----ccccCCC-CCCEEEccCCcccccCCccccCC-----CC
Q 040833 219 ILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIP----GSIVDLY-KLQRLALEGNKFWGEIPSSIGNL-----TL 288 (503)
Q Consensus 219 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~-----~~ 288 (503)
...++.+.+.+..+..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45788888888888777777789999999999997666 6788888 89999999999987766666553 99
Q ss_pred CCEEEccCCcCcccCCcc----ccCC-CCCCEEECcCCcCcccCCcchhcc-----ccccceeEccCCCCccCCCcc---
Q 040833 289 LITLNFEENMLEGSIPSS----LGKC-QNLISLNLSNNNLSGTIPTEVIGL-----SSLSIYLDLSQNQLNGPLPSN--- 355 (503)
Q Consensus 289 L~~L~l~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~~~~-----~~l~~~L~l~~n~l~~~~~~~--- 355 (503)
|++|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+... ..+ ++|++++|.+++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI-TSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC-CEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce-eEEEccCCcCCHHHHHHHHH
Confidence 999999999998666553 4444 899999999999986655554432 355 99999999998654433
Q ss_pred -hhcCC-CCCeEeCCCCcccccCCc----cccCC-CCCCEEECCCCcCccc----CchhccC-CCCCCEEeCCCCccccc
Q 040833 356 -FGILK-NLGAIDISENKLSGQIPS----SIGSC-TRLEQLVMNGNFFQGN----IPSSLSS-LRGIENLDLSRNNLSGR 423 (503)
Q Consensus 356 -~~~~~-~L~~L~l~~n~l~~~~~~----~~~~~-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~ 423 (503)
+..++ +|++|++++|.+++..+. .+..+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 34455 999999999999876654 34445 5999999999999863 3445554 46999999999999865
Q ss_pred cC----ccCcCCCCCCeeecCCCcCcccCC--------CCCccCCCCceeccCCCCCc
Q 040833 424 IP----KYLENFPFLQNLNLSFNHFEGEVP--------IKGVFSNSSAISIDGNDNLC 469 (503)
Q Consensus 424 ~~----~~~~~~~~L~~L~l~~n~l~~~~~--------~~~~~~~l~~l~~~~n~~~c 469 (503)
.+ ..+..+++|++|++++|.+....+ ....+++|+.+++++|+...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 43 446788999999999999543222 23445677888888886543
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=186.09 Aligned_cols=225 Identities=19% Similarity=0.177 Sum_probs=177.7
Q ss_pred CCCCEEECcCCcccccCchh---HhhccccCcEEEeeccccccccchhc--cCCCCCcEEEccCCcccccCC----cccc
Q 040833 190 SRLELLQISDNNFGGMLPEA---VGNLSTRLRILIVGNNQLFGNIPSGL--RNLVNLEFLHLGGNQFTGRIP----GSIV 260 (503)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~----~~~~ 260 (503)
..++.+.+.++.+....... +... ++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45777787777664321111 1122 369999999999988777777 889999999999999886444 3455
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCccc----CCccccCCCCCCEEECcCCcCcccCCc----chh
Q 040833 261 DLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGS----IPSSLGKCQNLISLNLSNNNLSGTIPT----EVI 332 (503)
Q Consensus 261 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~ 332 (503)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.++ ..+. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 788999999999999888888899999999999999987542 1233467899999999999997 3333 245
Q ss_pred ccccccceeEccCCCCccCCCcchhcC---CCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833 333 GLSSLSIYLDLSQNQLNGPLPSNFGIL---KNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409 (503)
Q Consensus 333 ~~~~l~~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 409 (503)
.++.+ ++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++
T Consensus 222 ~l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQP-HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCC-SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCC-CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 66777 999999999998767666666 69999999999999 6676664 7999999999999954 33 678899
Q ss_pred CCEEeCCCCcccc
Q 040833 410 IENLDLSRNNLSG 422 (503)
Q Consensus 410 L~~L~L~~n~l~~ 422 (503)
|+.|++++|++++
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999974
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=2.9e-21 Score=175.56 Aligned_cols=180 Identities=23% Similarity=0.324 Sum_probs=160.7
Q ss_pred CCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEe
Q 040833 287 TLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAID 366 (503)
Q Consensus 287 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 366 (503)
...++++++++.+. ..|..+. +++++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKL-TWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccC-CEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45678999998888 4444443 689999999999998777788899999 9999999999988888899999999999
Q ss_pred CCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcc
Q 040833 367 ISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 367 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
+++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999998778889999999999999999998777788999999999999999998887789999999999999999997
Q ss_pred cCC-CCCccCCCCceeccCCCCCcc
Q 040833 447 EVP-IKGVFSNSSAISIDGNDNLCG 470 (503)
Q Consensus 447 ~~~-~~~~~~~l~~l~~~~n~~~c~ 470 (503)
..+ ....+++|+.+++++|++.|.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 766 456678999999999999996
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.7e-21 Score=182.49 Aligned_cols=189 Identities=24% Similarity=0.338 Sum_probs=91.8
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
++++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 566666666655532 2 35556666666666666553322 55566666666666665532 235555566666666
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 375 (503)
+|.+.+.. .+..+++|++|++++|.+.+. +. +..++.+ +.|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 116 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 116 STQITDVT--PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TSCCCCCG--GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCch--hhcCCCCCCEEECCCCccCcC-cc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC
Confidence 66555321 255555555555555555422 11 3334444 444444444443211 44444444444444444422
Q ss_pred CCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccc
Q 040833 376 IPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLS 421 (503)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 421 (503)
.+ +..+++|+.|++++|.+++.. .+..+++|++|++++|+++
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 21 344444444444444444222 1344444444444444443
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.1e-22 Score=193.85 Aligned_cols=245 Identities=17% Similarity=0.204 Sum_probs=191.5
Q ss_pred cccCcEEEeeccccccccchhccCC--CCCcEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCC
Q 040833 214 STRLRILIVGNNQLFGNIPSGLRNL--VNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGE-IPSSIGNLTLLI 290 (503)
Q Consensus 214 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~ 290 (503)
+..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 446899999998776 3445555 7899999999999876554 55789999999999998755 666788899999
Q ss_pred EEEccCCcCcccCCccccCCCCCCEEECcCC-cCccc-CCcchhccccccceeEccCC-CCccC-CCcchhcCC-CCCeE
Q 040833 291 TLNFEENMLEGSIPSSLGKCQNLISLNLSNN-NLSGT-IPTEVIGLSSLSIYLDLSQN-QLNGP-LPSNFGILK-NLGAI 365 (503)
Q Consensus 291 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~l~~~L~l~~n-~l~~~-~~~~~~~~~-~L~~L 365 (503)
+|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..++.+ ++|++++| .+++. .+..+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 9999999988777778888999999999999 67643 56667778888 99999999 88754 456678899 99999
Q ss_pred eCCCC--ccc-ccCCccccCCCCCCEEECCCCc-CcccCchhccCCCCCCEEeCCCCc-cccccCccCcCCCCCCeeecC
Q 040833 366 DISEN--KLS-GQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENLDLSRNN-LSGRIPKYLENFPFLQNLNLS 440 (503)
Q Consensus 366 ~l~~n--~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~ 440 (503)
++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 99999 455 3456677789999999999998 776777888999999999999995 443333467889999999999
Q ss_pred CCcCcccCCCCCcc-CCCCceeccCCC
Q 040833 441 FNHFEGEVPIKGVF-SNSSAISIDGND 466 (503)
Q Consensus 441 ~n~l~~~~~~~~~~-~~l~~l~~~~n~ 466 (503)
+| +.... ...+ ..+..|++++|.
T Consensus 281 ~~-i~~~~--~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 281 GI-VPDGT--LQLLKEALPHLQINCSH 304 (336)
T ss_dssp TS-SCTTC--HHHHHHHSTTSEESCCC
T ss_pred Cc-cCHHH--HHHHHhhCcceEEeccc
Confidence 99 33211 1112 345666665553
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.3e-23 Score=202.31 Aligned_cols=239 Identities=20% Similarity=0.223 Sum_probs=187.9
Q ss_pred ccchhccCCCCCcEEEccCCcccccCC----ccccCCCCCCEEEccCCccc---ccCCcc-------ccCCCCCCEEEcc
Q 040833 230 NIPSGLRNLVNLEFLHLGGNQFTGRIP----GSIVDLYKLQRLALEGNKFW---GEIPSS-------IGNLTLLITLNFE 295 (503)
Q Consensus 230 ~~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~---~~~~~~-------~~~~~~L~~L~l~ 295 (503)
.++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +..|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344567788999999999999886533 44778999999999997543 333433 3688999999999
Q ss_pred CCcCcc----cCCccccCCCCCCEEECcCCcCcccCCcchhc----c---------ccccceeEccCCCCccC-CC---c
Q 040833 296 ENMLEG----SIPSSLGKCQNLISLNLSNNNLSGTIPTEVIG----L---------SSLSIYLDLSQNQLNGP-LP---S 354 (503)
Q Consensus 296 ~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~----~---------~~l~~~L~l~~n~l~~~-~~---~ 354 (503)
+|.+.. ..+..+..+++|++|++++|.+....+..+.. + +.+ ++|++++|.+++. .+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL-RSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC-CEEECCSSCCTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC-cEEECCCCCCCcHHHHHHHH
Confidence 999986 35567788999999999999997444433333 3 677 9999999999732 33 3
Q ss_pred chhcCCCCCeEeCCCCcccc-----cCCccccCCCCCCEEECCCCcCc----ccCchhccCCCCCCEEeCCCCccccc--
Q 040833 355 NFGILKNLGAIDISENKLSG-----QIPSSIGSCTRLEQLVMNGNFFQ----GNIPSSLSSLRGIENLDLSRNNLSGR-- 423 (503)
Q Consensus 355 ~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~-- 423 (503)
.+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..++..+..+++|++|+|++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 56788999999999999973 23447888999999999999996 46778889999999999999999865
Q ss_pred --cCccCc--CCCCCCeeecCCCcCcc----cCCC-C-CccCCCCceeccCCCCCc
Q 040833 424 --IPKYLE--NFPFLQNLNLSFNHFEG----EVPI-K-GVFSNSSAISIDGNDNLC 469 (503)
Q Consensus 424 --~~~~~~--~~~~L~~L~l~~n~l~~----~~~~-~-~~~~~l~~l~~~~n~~~c 469 (503)
++..+. .+++|++|++++|.+++ ..|. . ..+++|+.|++++|+...
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 455553 38999999999999997 2332 2 336889999999887654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.7e-20 Score=175.76 Aligned_cols=196 Identities=26% Similarity=0.332 Sum_probs=162.2
Q ss_pred ccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCC
Q 040833 235 LRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLI 314 (503)
Q Consensus 235 ~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 314 (503)
...+++|++|+++++.+.. .+ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3456789999999998884 33 67889999999999999886544 88899999999999998854 3688899999
Q ss_pred EEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833 315 SLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394 (503)
Q Consensus 315 ~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 394 (503)
+|++++|.+.+ .+ .+..++.+ ++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-ch-hhcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 99999999884 33 37778888 899999999985533 7889999999999999985433 888999999999999
Q ss_pred cCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc
Q 040833 395 FFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE 447 (503)
Q Consensus 395 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 447 (503)
.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 9985433 788999999999999998655 378899999999999998763
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=2.3e-20 Score=178.38 Aligned_cols=241 Identities=16% Similarity=0.139 Sum_probs=160.2
Q ss_pred CEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCccccc-CCccccCCCCCCE-EEc
Q 040833 193 ELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGR-IPGSIVDLYKLQR-LAL 270 (503)
Q Consensus 193 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~~~L~~-L~l 270 (503)
++++.++++++ .+|..+ |+++++|++++|.+....+..|.++++|++|++++|.+.+. .+.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46677777776 445433 45788888888888766666788888888888888887543 3456777777665 555
Q ss_pred cCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC-CcCcccCCcchhccccccceeEccCCCCc
Q 040833 271 EGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN-NNLSGTIPTEVIGLSSLSIYLDLSQNQLN 349 (503)
Q Consensus 271 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~l~~~L~l~~n~l~ 349 (503)
.+|.+..+.+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+...++.|++++|.|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 66777777777788888888888888888766666666667777787765 45554444455555544477788888777
Q ss_pred cCCCcchhcCCCCCeEeCCC-CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccC
Q 040833 350 GPLPSNFGILKNLGAIDISE-NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYL 428 (503)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 428 (503)
...+..|. ..+|+++++++ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--+..| .+
T Consensus 168 ~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 54444443 45677777764 5565444456777777888888888777443333 3455666655543333444 36
Q ss_pred cCCCCCCeeecCCC
Q 040833 429 ENFPFLQNLNLSFN 442 (503)
Q Consensus 429 ~~~~~L~~L~l~~n 442 (503)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777777777643
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.5e-20 Score=166.79 Aligned_cols=195 Identities=20% Similarity=0.242 Sum_probs=130.6
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCC
Q 040833 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE 369 (503)
Q Consensus 290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 369 (503)
+.++++++.++. .|..+ .+++++|++++|.+.+..+..+..++.+ +.|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 345555555542 22222 1456666666666654444455555555 6666666666656666777888888888888
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 370 NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88886666677888889999999999888878888889999999999999987777788889999999999999988776
Q ss_pred CCCccCCCCceeccCCCCCcccCCCCCCCCCCCCCcccccc
Q 040833 450 IKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRS 490 (503)
Q Consensus 450 ~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~~~~~~~~~~~ 490 (503)
..+....+....+......|..+.. +.+-.+..+++..+
T Consensus 170 l~~l~~~l~~~~~~~~~~~C~~P~~--l~g~~l~~l~~~~~ 208 (220)
T 2v9t_B 170 LKWLADYLHTNPIETSGARCTSPRR--LANKRIGQIKSKKF 208 (220)
T ss_dssp GHHHHHHHHHCCCBCSCCBEEESGG--GTTCBGGGSCGGGC
T ss_pred cHHHHHHHHhCCCCccCCCcCCchH--HcCCchhhCCHHHC
Confidence 4433333332223333345654433 34555555555444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6e-20 Score=175.44 Aligned_cols=241 Identities=15% Similarity=0.106 Sum_probs=177.0
Q ss_pred cEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccc-hhccCCCCC
Q 040833 163 EWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIP-SGLRNLVNL 241 (503)
Q Consensus 163 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 241 (503)
+.++.+++.++.. +..+ .+++++|++++|.++...+..|..++ +|++|++++|.+.+.++ ..|.+++++
T Consensus 12 ~~v~C~~~~Lt~i-------P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 12 RVFLCQESKVTEI-------PSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp TEEEEESTTCCSC-------CTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CEEEecCCCCCcc-------CcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhh
Confidence 5677777777643 2222 25789999999999866556677776 89999999998765443 467888887
Q ss_pred cE-EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccC-CcCcccCCccccCCC-CCCEEEC
Q 040833 242 EF-LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEE-NMLEGSIPSSLGKCQ-NLISLNL 318 (503)
Q Consensus 242 ~~-L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l 318 (503)
++ +.+.+|.+....+..|..+++|++|++++|.+....+..+.....+..+++.+ +.+....+..|..+. .++.|++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence 65 55666888877788889999999999999998876666677777888888865 456656666666664 6888999
Q ss_pred cCCcCcccCCcchhccccccceeEccC-CCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833 319 SNNNLSGTIPTEVIGLSSLSIYLDLSQ-NQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 319 ~~n~~~~~~~~~~~~~~~l~~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 397 (503)
++|.++ .++.......++ +.+++++ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.-.
T Consensus 162 ~~N~i~-~i~~~~f~~~~L-~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 162 NKNGIQ-EIHNSAFNGTQL-DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNL 236 (350)
T ss_dssp CSSCCC-EECTTSSTTEEE-EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTC
T ss_pred cccccc-CCChhhccccch-hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCc
Confidence 999988 455555555666 7888864 6677555567888999999999999998544444 445666666665444
Q ss_pred ccCchhccCCCCCCEEeCCCCc
Q 040833 398 GNIPSSLSSLRGIENLDLSRNN 419 (503)
Q Consensus 398 ~~~~~~~~~l~~L~~L~L~~n~ 419 (503)
..+| .+..+++|+.+++.++.
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSCHH
T ss_pred CcCC-CchhCcChhhCcCCCCc
Confidence 4566 47788999999998654
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=165.75 Aligned_cols=195 Identities=18% Similarity=0.179 Sum_probs=138.0
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC-cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP-TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS 368 (503)
Q Consensus 290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 368 (503)
++++++++.++. .|..+ .+.+++|++++|.+.+..+ ..+..++.+ +.|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 356666666653 33322 2345667777776664433 335566666 677777777776666678888899999999
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833 369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448 (503)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 448 (503)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++.+.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998777778889999999999999999888888999999999999999999888889999999999999999999887
Q ss_pred CCCCccCCCCceeccCCCCCcccCCCCCCCCCCCCCcccccc
Q 040833 449 PIKGVFSNSSAISIDGNDNLCGGISELHLSTCSIKESKQSRS 490 (503)
Q Consensus 449 ~~~~~~~~l~~l~~~~n~~~c~~~~~~~ls~~~~~~~~~~~~ 490 (503)
+..+....++...+......|..+. .+.+-.+..++...+
T Consensus 170 ~l~~l~~~~~~~~~~~~~~~C~~P~--~l~g~~l~~l~~~~~ 209 (220)
T 2v70_A 170 YLAWLGEWLRKKRIVTGNPRCQKPY--FLKEIPIQDVAIQDF 209 (220)
T ss_dssp GGHHHHHHHHHSCCBCCCCEEEESG--GGTTEEGGGSCGGGC
T ss_pred chHHHHHHHHhcCccccCCccCCCh--HHCCCChhhCCHHHc
Confidence 7544433333333322223565543 334444444444333
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.5e-19 Score=160.37 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=138.6
Q ss_pred CEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCC
Q 040833 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG 393 (503)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 393 (503)
+.++++++.++ .+|..+. +.+ +.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l-~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETI-TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTC-CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCC-CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 68899999988 6666543 344 9999999999988777899999999999999999988899999999999999999
Q ss_pred CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCcccC
Q 040833 394 NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+++..+. ...+++|+.+++++||+.|+|-
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 999977777789999999999999999988899999999999999999999987663 5567899999999999999753
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.2e-19 Score=157.16 Aligned_cols=153 Identities=24% Similarity=0.259 Sum_probs=80.5
Q ss_pred CCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833 289 LITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS 368 (503)
Q Consensus 289 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 368 (503)
+++|++++|.+....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+++..+..|..+++|++|+++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL-TYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc-CEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 3333333333333333333333344444444443332222223333333 444444444443333345556666666666
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccC
Q 040833 369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEV 448 (503)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 448 (503)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++. ..+++|+.|++..|.+++..
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 66666555555666667777777777666555555666677777777777554 23456777777777777665
Q ss_pred C
Q 040833 449 P 449 (503)
Q Consensus 449 ~ 449 (503)
|
T Consensus 182 p 182 (208)
T 2o6s_A 182 R 182 (208)
T ss_dssp B
T ss_pred e
Confidence 5
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=156.33 Aligned_cols=156 Identities=17% Similarity=0.227 Sum_probs=138.0
Q ss_pred CCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCC-cchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833 313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLP-SNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391 (503)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 391 (503)
-+.+++++|.++ .+|..+. ..++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 358999999998 5676543 334899999999997644 55889999999999999999888889999999999999
Q ss_pred CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC-CCCccCCCCceeccCCCCCcc
Q 040833 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP-IKGVFSNSSAISIDGNDNLCG 470 (503)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~~c~ 470 (503)
++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+++..| ....+++|+.+++++||+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999998888889999999999999999998889999999999999999999998755 456688999999999999997
Q ss_pred cC
Q 040833 471 GI 472 (503)
Q Consensus 471 ~~ 472 (503)
|-
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 54
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=171.89 Aligned_cols=181 Identities=23% Similarity=0.228 Sum_probs=150.2
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCcccc-CCCCCCEEECcCCcCcccCCcchhccccccceeEcc
Q 040833 266 QRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLG-KCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLS 344 (503)
Q Consensus 266 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~ 344 (503)
+.++++++.+.. .|..+ .+.++.|++++|.+....+..+. .+++|++|++++|.+.+..+..+..++.+ ++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECC
Confidence 578999998874 45443 35689999999999987777777 89999999999999987777778888888 899999
Q ss_pred CCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhc---cCCCCCCEEeCCCCccc
Q 040833 345 QNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSL---SSLRGIENLDLSRNNLS 421 (503)
Q Consensus 345 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~ 421 (503)
+|.++...+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987777788889999999999999988888889999999999999999986655555 56899999999999998
Q ss_pred cccCccCcCCCC--CCeeecCCCcCcccCCC
Q 040833 422 GRIPKYLENFPF--LQNLNLSFNHFEGEVPI 450 (503)
Q Consensus 422 ~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~ 450 (503)
...+..+..++. ++.|++++|++.+.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 666667777776 48899999999987653
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.8e-19 Score=155.49 Aligned_cols=162 Identities=24% Similarity=0.213 Sum_probs=82.3
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEc
Q 040833 264 KLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDL 343 (503)
Q Consensus 264 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l 343 (503)
++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..++.+ ++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL-KELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC-CEEEc
Confidence 34444444444443333333444444444444444443333334444444444444444443222333344444 44444
Q ss_pred cCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccc
Q 040833 344 SQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGR 423 (503)
Q Consensus 344 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 423 (503)
++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+. ..+++|++|+++.|++++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 445444444444555666666666666666555555666666666666666554 2345666666776766666
Q ss_pred cCccCcCCCC
Q 040833 424 IPKYLENFPF 433 (503)
Q Consensus 424 ~~~~~~~~~~ 433 (503)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 6666555543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.5e-19 Score=170.03 Aligned_cols=176 Identities=23% Similarity=0.157 Sum_probs=151.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEEccCCcCcccCCccccCCCCCCEEECcC
Q 040833 242 EFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIG-NLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSN 320 (503)
Q Consensus 242 ~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 320 (503)
+.++++++.++. +|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 689999998884 555443 4689999999999988888887 899999999999999988888899999999999999
Q ss_pred CcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccc---cCCCCCCEEECCCCcCc
Q 040833 321 NNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSI---GSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 321 n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~ 397 (503)
|.+....+..+..++.+ +.|++++|.+....+..|..+++|++|++++|.+++..+..| ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99987767778888888 999999999998888889999999999999999986555555 56899999999999999
Q ss_pred ccCchhccCCCC--CCEEeCCCCccc
Q 040833 398 GNIPSSLSSLRG--IENLDLSRNNLS 421 (503)
Q Consensus 398 ~~~~~~~~~l~~--L~~L~L~~n~l~ 421 (503)
+..+..+..++. ++.|+|++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 777778888877 489999999986
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.5e-18 Score=153.52 Aligned_cols=155 Identities=22% Similarity=0.267 Sum_probs=113.8
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCC
Q 040833 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISE 369 (503)
Q Consensus 290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 369 (503)
+.++++++.+.. .|..+ .++|++|++++|.+.+..+..+..++.+ +.|++++|.++...+..|..+++|++|++++
T Consensus 22 ~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L-~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINL-KELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCC-cEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445555555552 22222 2566666666666665555555566665 6666666666655555677788888888888
Q ss_pred CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 370 NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 370 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|++.+.++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888666677788888999999999888 667778888999999999999887777778888999999999999888765
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1e-18 Score=162.12 Aligned_cols=171 Identities=25% Similarity=0.361 Sum_probs=108.1
Q ss_pred cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833 236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS 315 (503)
Q Consensus 236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 315 (503)
..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4567788888888877743 2 46777788888888887775443 77778888888888877642 23677777777
Q ss_pred EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395 (503)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 395 (503)
|++++|.+.+. ..+..++.+ +.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 77777777632 344555555 5666666666543 345556666666666666654332 5555666666666666
Q ss_pred CcccCchhccCCCCCCEEeCCCCccc
Q 040833 396 FQGNIPSSLSSLRGIENLDLSRNNLS 421 (503)
Q Consensus 396 l~~~~~~~~~~l~~L~~L~L~~n~l~ 421 (503)
+++. + .+..+++|+.|++++|+++
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCccc
Confidence 5532 2 2555566666666666555
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.3e-18 Score=153.78 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=136.9
Q ss_pred CCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEEC
Q 040833 312 NLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVM 391 (503)
Q Consensus 312 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 391 (503)
+-+.++++++.+. .+|..+. +.+ +.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|+.|+|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L-~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNA-QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCC-CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4678999999887 6666443 455 99999999999888888999999999999999998776778899999999999
Q ss_pred CCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC-CCCccCCCCceeccCCCCCcc
Q 040833 392 NGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP-IKGVFSNSSAISIDGNDNLCG 470 (503)
Q Consensus 392 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~l~~l~~~~n~~~c~ 470 (503)
++|.+++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|.+++..+ ....+++|+.+++++||+.|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999887788999999999999999999 667888999999999999999997665 355678999999999999997
Q ss_pred c
Q 040833 471 G 471 (503)
Q Consensus 471 ~ 471 (503)
|
T Consensus 175 c 175 (229)
T 3e6j_A 175 C 175 (229)
T ss_dssp B
T ss_pred c
Confidence 6
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.7e-18 Score=160.67 Aligned_cols=172 Identities=23% Similarity=0.300 Sum_probs=116.0
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccc
Q 040833 260 VDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI 339 (503)
Q Consensus 260 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 339 (503)
..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ .+ .+..++.+ +
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L-~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL-K 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC-C
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC-C
Confidence 4556777777777776643 236667777777777777765433 6677777777777777763 22 36666666 7
Q ss_pred eeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419 (503)
Q Consensus 340 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 419 (503)
+|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 777777777643 3466677777777777777643 456677777777777777775433 6677777777777777
Q ss_pred cccccCccCcCCCCCCeeecCCCcCcc
Q 040833 420 LSGRIPKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 420 l~~~~~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
+++. + .+..+++|+.|++++|++..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7643 2 36677777777777777664
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=5.9e-18 Score=169.95 Aligned_cols=183 Identities=27% Similarity=0.332 Sum_probs=81.4
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.+++ .|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 33222 245555555555555 223 234455555555555553 232 322 55555555
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 375 (503)
+|.+++ .|. .+++|+.|++++|.+++ +|. .++++ +.|++++|.+++ +|. |. ++|++|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 555543 222 34555555555555542 332 22333 445555555443 222 32 44555555555444 3
Q ss_pred CCccccCCCCC-------CEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCcc
Q 040833 376 IPSSIGSCTRL-------EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKY 427 (503)
Q Consensus 376 ~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 427 (503)
+|. +.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|++++..|..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 333 222 33 44445444444 23333333444444444444444443333
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.1e-18 Score=151.38 Aligned_cols=168 Identities=22% Similarity=0.332 Sum_probs=128.7
Q ss_pred CEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCc-chhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECC
Q 040833 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPS-NFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392 (503)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 392 (503)
+.++++++.+. .+|..+.. .+ ++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777775 55554332 34 7788888887755543 47888999999999999998888899999999999999
Q ss_pred CCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccC
Q 040833 393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGI 472 (503)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~ 472 (503)
+|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+.++..+....++...+.++...|+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 99999888888999999999999999999888889999999999999999999888755554555555566666677655
Q ss_pred CCCCCCCCCCCCccc
Q 040833 473 SELHLSTCSIKESKQ 487 (503)
Q Consensus 473 ~~~~ls~~~~~~~~~ 487 (503)
..+ .+-.+..+..
T Consensus 167 ~~l--~~~~l~~l~~ 179 (192)
T 1w8a_A 167 SKV--RDVQIKDLPH 179 (192)
T ss_dssp TTT--TTSBGGGSCT
T ss_pred hHH--cCCChhhCcH
Confidence 433 3334444433
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.4e-17 Score=167.12 Aligned_cols=181 Identities=22% Similarity=0.345 Sum_probs=118.4
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS 319 (503)
Q Consensus 240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 319 (503)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777775 44433 256777777777776 334 346777777777777775 343 433 77777777
Q ss_pred CCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc
Q 040833 320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN 399 (503)
Q Consensus 320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 399 (503)
+|.+++ +|. .++++ +.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|+|++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777764 454 34555 777777777774 333 45677777777777774 444 44 67777777777777 4
Q ss_pred CchhccCCCCC-------CEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 400 IPSSLSSLRGI-------ENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 400 ~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|++++..|
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 444 443 55 77777777777 355555557777777777777776544
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.4e-17 Score=169.24 Aligned_cols=175 Identities=25% Similarity=0.357 Sum_probs=108.8
Q ss_pred cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833 236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS 315 (503)
Q Consensus 236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 315 (503)
..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 3455566666666665532 2 35566666666666666654433 55666666666666666532 24566666777
Q ss_pred EECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc
Q 040833 316 LNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF 395 (503)
Q Consensus 316 L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 395 (503)
|++++|.+.+ + ..+..++.+ +.|++++|.+.+. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 7777766653 2 335555555 6666666666643 456667777777777777765444 6677777777777777
Q ss_pred CcccCchhccCCCCCCEEeCCCCccccccC
Q 040833 396 FQGNIPSSLSSLRGIENLDLSRNNLSGRIP 425 (503)
Q Consensus 396 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 425 (503)
+.+. ..+..+++|+.|+|++|++.....
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 7643 346677777777777777764433
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.5e-18 Score=164.37 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=59.0
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC-EEEccCCcCcccCCccccCCCCCCEE
Q 040833 238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLI-TLNFEENMLEGSIPSSLGKCQNLISL 316 (503)
Q Consensus 238 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L 316 (503)
+++|+++++++|.++...+.+|.++.+|+.+++.+| +..+...+|..+++|+ .+++.+ .+..+.+.+|.+|++|+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 556666666666555555556666666666666665 4445555566666666 666655 4554555566666666666
Q ss_pred ECcCCcCcccCCcchhcccccccee
Q 040833 317 NLSNNNLSGTIPTEVIGLSSLSIYL 341 (503)
Q Consensus 317 ~l~~n~~~~~~~~~~~~~~~l~~~L 341 (503)
++++|.+....+..|.+++++ +.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L-~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPS-KLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCC-CEE
T ss_pred EeCCCccCccchhhhcCCcch-hhh
Confidence 666666654444555555555 444
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.1e-18 Score=147.89 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=57.5
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCc-CcccCchhccCCCCCCEEeCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSLRGIENLDLSR 417 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~ 417 (503)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++
T Consensus 91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQF 168 (197)
T ss_dssp CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTT
T ss_pred CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCC
Confidence 444444444443344445555666666666666665555556666666666666665 43 333 456666666666666
Q ss_pred CccccccCccCcCCCCCCeeecCCCcCc
Q 040833 418 NNLSGRIPKYLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 418 n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 445 (503)
|++++.. .+..+++|++|++++|++.
T Consensus 169 n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 169 DGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred CCCcChH--HhccCCCCCEEEeeCcccC
Confidence 6665422 4556666666666666654
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.8e-17 Score=168.24 Aligned_cols=187 Identities=22% Similarity=0.291 Sum_probs=157.9
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcC
Q 040833 244 LHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNL 323 (503)
Q Consensus 244 L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 323 (503)
+.+..+.+.+.. .+..++.|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 344445444332 345778999999999998854 3 58889999999999999986554 88999999999999999
Q ss_pred cccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchh
Q 040833 324 SGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSS 403 (503)
Q Consensus 324 ~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 403 (503)
.+ .+ .+..++.+ +.|++++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..+
T Consensus 100 ~~-l~-~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 100 KD-LS-SLKDLKKL-KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp CC-CT-TSTTCTTC-CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred CC-Ch-hhccCCCC-CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 84 33 67888888 9999999999854 4588999999999999999864 678899999999999999997655
Q ss_pred ccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCccc
Q 040833 404 LSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGE 447 (503)
Q Consensus 404 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 447 (503)
+..+++|+.|+|++|++++. ..+..+++|+.|++++|++...
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 89999999999999999864 4688999999999999999864
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=8.1e-18 Score=159.23 Aligned_cols=270 Identities=11% Similarity=0.060 Sum_probs=147.0
Q ss_pred CCCCcEEEcccccCCCCCCCCccccccccC-CCCCCEEECcCCccc--ccCchhHhhccccCcEEEeeccccccccchhc
Q 040833 159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVN-ASRLELLQISDNNFG--GMLPEAVGNLSTRLRILIVGNNQLFGNIPSGL 235 (503)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 235 (503)
+.++++|.++++- .. .....+.. +++|++|++++|.+. ..... ..+ .++.+.+..+. .....|
T Consensus 24 ~~~l~~L~l~g~i-~~------~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~-~~~~~~~~~~~---I~~~aF 89 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NA------EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYP-NGKFYIYMANF---VPAYAF 89 (329)
T ss_dssp HHHCSEEEEEEEE-CH------HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSG-GGCCEEECTTE---ECTTTT
T ss_pred hCceeEEEEeccc-cH------HHHHHHHHhhccCeEEecCcceeEEecCccc---ccc-ccccccccccc---cCHHHh
Confidence 4457777776542 11 11122222 567777787777766 11111 111 23334444442 223345
Q ss_pred cC--------CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc----CcccC
Q 040833 236 RN--------LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENM----LEGSI 303 (503)
Q Consensus 236 ~~--------~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~----~~~~~ 303 (503)
.+ +++|++|++.. .++.+.+.+|.++++|+.+++++|.+..+.+.+|..+.++..+...... ...+.
T Consensus 90 ~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~ 168 (329)
T 3sb4_A 90 SNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168 (329)
T ss_dssp EEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT
T ss_pred cccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc
Confidence 55 77788888877 6666666777777888888888777766667777776666666555422 12233
Q ss_pred CccccCCCCCC-EEECcCCcCcccCCcchh----ccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCc
Q 040833 304 PSSLGKCQNLI-SLNLSNNNLSGTIPTEVI----GLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPS 378 (503)
Q Consensus 304 ~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~----~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 378 (503)
..+|..+..|+ .+.+..... ++..+. ....+ ..+.+.++-...........+++|+++++++|.++...+.
T Consensus 169 ~~~f~~~~~L~~~i~~~~~~~---l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 169 HFAFIEGEPLETTIQVGAMGK---LEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp TSCEEESCCCEEEEEECTTCC---HHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred ccccccccccceeEEecCCCc---HHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 34455556665 333332211 111111 11111 3333333211101111111356677777777666656666
Q ss_pred cccCCCCCCEEECCCCcCcccCchhccCCCCCC-EEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 379 SIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIE-NLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 379 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+|.+|++|+.|++.+| ++.+...+|.+|++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++...+
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 6777777777777666 5555666677777777 777766 5655666667777777777776666664443
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-17 Score=145.20 Aligned_cols=153 Identities=15% Similarity=0.225 Sum_probs=108.0
Q ss_pred CCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833 13 GSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY 92 (503)
Q Consensus 13 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (503)
+.+++|++|++++|.++ ..| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+....+..+.++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56777888888888887 445 57778888888888886552 346777888888888888887666777788888888
Q ss_pred EEccCCCCcccCchhhhcCCCCCCEEEccCCc-ccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEccccc
Q 040833 93 ICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQ-FTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGISRNH 171 (503)
Q Consensus 93 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~~n~ 171 (503)
|++++|.+.+..+..+.. +++|++|++++|. ++ .++ .+..+++|++|++++|.+.... .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINT-LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhh-CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 888888877555655554 7888888888876 54 444 5677777777777777766432 56666666667666666
Q ss_pred CC
Q 040833 172 LG 173 (503)
Q Consensus 172 l~ 173 (503)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=144.37 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=128.8
Q ss_pred CEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCC
Q 040833 314 ISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNG 393 (503)
Q Consensus 314 ~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 393 (503)
+.++++++.+. .+|..+. +.+ ++|++++|.++ .++..|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46677777766 4554332 233 77888888887 5567788899999999999999987778899999999999999
Q ss_pred CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCCCccCCCCceeccCCCCCcccCC
Q 040833 394 NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIKGVFSNSSAISIDGNDNLCGGIS 473 (503)
Q Consensus 394 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~~~ 473 (503)
|.+++..+..|.++++|++|+|++|+++...+..|..+++|+.|++++|++.+.+...+....++..........|..+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 99998888889999999999999999997777789999999999999999998776544333333222223334565444
Q ss_pred CCCCCCCCCCCcccccccc
Q 040833 474 ELHLSTCSIKESKQSRSRS 492 (503)
Q Consensus 474 ~~~ls~~~~~~~~~~~~~~ 492 (503)
.+.+-.+..+++..++.
T Consensus 168 --~l~g~~l~~~~~~~~~~ 184 (193)
T 2wfh_A 168 --EMADKLLLTTPSKKFTC 184 (193)
T ss_dssp --GGTTCBTTTSCGGGCCC
T ss_pred --HHCCCCcccCChHHeee
Confidence 34566666666665543
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=5.6e-16 Score=150.38 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=39.1
Q ss_pred hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCC
Q 040833 356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQ 435 (503)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 435 (503)
|..+.+|+.+.+.++ ++.+...+|.+|.+|+.+++.++ ++.+...+|.+|.+|+.+++..+ ++.+...+|.++++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 444445555555433 33333445555555555555432 33344445555555555555444 4434444555555555
Q ss_pred eeecC
Q 040833 436 NLNLS 440 (503)
Q Consensus 436 ~L~l~ 440 (503)
.+++.
T Consensus 370 ~i~lp 374 (394)
T 4fs7_A 370 KVELP 374 (394)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 55553
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=7.2e-16 Score=149.62 Aligned_cols=330 Identities=13% Similarity=0.067 Sum_probs=176.6
Q ss_pred CcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCC
Q 040833 9 PGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLS 88 (503)
Q Consensus 9 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 88 (503)
..||.+|++|+.+.+..+ ++.+...+|.+|++|+.+++..+ +..+...+|..+..|+.+.+..+ +......+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 445555555555555432 44444455555555555555433 33344445555555555444433 2223334444443
Q ss_pred CCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCCCCCcEEEcc
Q 040833 89 SLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKILHKLEWVGIS 168 (503)
Q Consensus 89 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l~~L~~L~l~ 168 (503)
.++....... . .+....+..+++|+.+.+..+. +......|..+.+|+.+.+..+ +....
T Consensus 141 ~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~--------------- 200 (394)
T 4fs7_A 141 FKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIR--------------- 200 (394)
T ss_dssp CSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEEC---------------
T ss_pred ccccccCccc--c-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeC---------------
Confidence 3222221111 1 2233333344555555554332 2233344444555554444332 11111
Q ss_pred cccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccC
Q 040833 169 RNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGG 248 (503)
Q Consensus 169 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 248 (503)
..++..+..|+.+.+..+... .....+ .. +.++.+.+.... .......+..+..++.+.+..
T Consensus 201 --------------~~~F~~~~~L~~i~~~~~~~~-i~~~~~-~~-~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 201 --------------DYCFAECILLENMEFPNSLYY-LGDFAL-SK-TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp --------------TTTTTTCTTCCBCCCCTTCCE-ECTTTT-TT-CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECC
T ss_pred --------------chhhccccccceeecCCCceE-eehhhc-cc-CCCceEEECCCc-eecccccccccccceeEEcCC
Confidence 123344455555554443221 111111 11 356666665432 223444566777777777766
Q ss_pred CcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCC
Q 040833 249 NQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIP 328 (503)
Q Consensus 249 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 328 (503)
+... .....|..+..++.+...... .....|..+.+|+.+.+.++ +..+...+|..|.+|+++++..+ ++....
T Consensus 263 ~~~~-i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 263 NKLR-IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp TTCE-ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred Ccce-eeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 6433 455667777777777766554 23345677777888777654 55466667777788888877544 544445
Q ss_pred cchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEE
Q 040833 329 TEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389 (503)
Q Consensus 329 ~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (503)
..|.++.+| +.+.+..+ ++......|.+|++|+.+++..+ +. ....+|.+|++|+.+
T Consensus 337 ~aF~~c~~L-~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSL-SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTC-CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhccCCCCC-CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 667777777 77777665 55566678889999999998765 33 334678888888765
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.9e-17 Score=151.02 Aligned_cols=169 Identities=24% Similarity=0.299 Sum_probs=106.0
Q ss_pred CCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEE
Q 040833 238 LVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLN 317 (503)
Q Consensus 238 ~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 317 (503)
+.+++.++++++.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344566667777776432 466777888888888877643 3 56777888888888887775443 77777888888
Q ss_pred CcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCc
Q 040833 318 LSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 318 l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 397 (503)
+++|++.+ ++... . +.+ +.|++++|.+++. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.++
T Consensus 92 L~~N~l~~-l~~~~-~-~~L-~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP-S-ACL-SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSC-CTTCC-C-SSC-CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCC-cCccc-c-Ccc-cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 88887763 33221 1 444 6666666666543 2355566666666666666533 2 4555666666666666665
Q ss_pred ccCchhccCCCCCCEEeCCCCcccc
Q 040833 398 GNIPSSLSSLRGIENLDLSRNNLSG 422 (503)
Q Consensus 398 ~~~~~~~~~l~~L~~L~L~~n~l~~ 422 (503)
+. ..+..+++|+.|++++|+++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch--HHhccCCCCCEEeCCCCcccC
Confidence 43 445566666666666666653
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.5e-17 Score=149.28 Aligned_cols=166 Identities=19% Similarity=0.266 Sum_probs=86.4
Q ss_pred cCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 040833 216 RLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFE 295 (503)
Q Consensus 216 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 295 (503)
++..+.++++.+.+.. .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444455555544322 24445556666666655552 22 45555556666666665554332 5555566666666
Q ss_pred CCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCccccc
Q 040833 296 ENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQ 375 (503)
Q Consensus 296 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 375 (503)
+|.+.+..+ +.. ++|++|++++|.+.+ . ..+..++.+ +.|++++|++++. ..+..+++|++|++++|.+++.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L-~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNL-EILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTC-CEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCC-C-hhhcCcccc-cEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 665553221 122 556666666665553 2 234455555 5566666655533 2355555666666666655533
Q ss_pred CCccccCCCCCCEEECCCCcCc
Q 040833 376 IPSSIGSCTRLEQLVMNGNFFQ 397 (503)
Q Consensus 376 ~~~~~~~~~~L~~L~L~~n~l~ 397 (503)
..+..+++|+.|++++|.++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 34555555666666665555
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=137.06 Aligned_cols=129 Identities=19% Similarity=0.231 Sum_probs=115.6
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN 418 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 418 (503)
+.++++++.++ .+|..+ .+++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 68999999998 555544 368999999999998 67789999999999999999999888889999999999999999
Q ss_pred ccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833 419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~ 471 (503)
+++...+..|..+++|+.|++++|.++...+. ...+++|+.+++++||+.|+|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 99988888999999999999999999976653 556789999999999999975
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=3.1e-15 Score=144.40 Aligned_cols=242 Identities=12% Similarity=0.092 Sum_probs=152.7
Q ss_pred CCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCEEE
Q 040833 190 SRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLA 269 (503)
Q Consensus 190 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~ 269 (503)
..++.+.+.+. ++......|.. . +|+.+.+..+ +..+...+|.++ +|+.+.+.. .++.....+|.++++|+.++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~-~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRN-S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTT-C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCEehHhhccc-C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34455555432 22233334443 2 5666666544 444444555553 577777765 44445556677777777777
Q ss_pred ccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCc
Q 040833 270 LEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLN 349 (503)
Q Consensus 270 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~ 349 (503)
+.+|.++.+....|. +.+|+.+.+.++ +..+...+|..+++|+++++..+ +.......|.. ..+ +.+.+. +.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L-~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI-TTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC-SEEEEE-TTCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc-cEEEeC-CCcc
Confidence 777766655555565 467777777643 55566667777777777777654 33233344444 444 667773 4455
Q ss_pred cCCCcchhcCCCCCeEeCCCCccc-----ccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc
Q 040833 350 GPLPSNFGILKNLGAIDISENKLS-----GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI 424 (503)
Q Consensus 350 ~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 424 (503)
......|.++++|+.+++.++.+. ...+.+|.+|++|+.+++.+ .++.+...+|.+|.+|+.++|..+ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 455667777888888887776553 35566788888888888874 466666777888888888888555 66566
Q ss_pred CccCcCCCCCCeeecCCCcCcc
Q 040833 425 PKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 425 ~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
..+|.++ +|+.+++.+|....
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCB
T ss_pred HHhCCCC-CCCEEEEcCCCCcc
Confidence 7778888 88888888886654
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=1e-14 Score=140.86 Aligned_cols=265 Identities=11% Similarity=0.036 Sum_probs=148.0
Q ss_pred CCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcEE
Q 040833 14 SLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNYI 93 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 93 (503)
.+++++.+.+.++ ++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3456666666543 454556666664 5777777655 555666666664 577777765 4554555667777777777
Q ss_pred EccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccC
Q 040833 94 CVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHL 172 (503)
Q Consensus 94 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l 172 (503)
++..|.+. .++...+. ..+|+.+.+..+ ++.+...+|.++++|+.+.+..+ +...... |.. .+|+.+.+..
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~--- 257 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN--- 257 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET---
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC---
Confidence 77766665 66666665 567777777633 55455566666666766666553 2222222 222 3344444321
Q ss_pred CCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccc-----cccchhccCCCCCcEEEcc
Q 040833 173 GNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLF-----GNIPSGLRNLVNLEFLHLG 247 (503)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~ls 247 (503)
.+.......|...+ +|+.+.+.++.+. ......|.+|++|+.+++.
T Consensus 258 ----------------------------~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 258 ----------------------------GVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ----------------------------TCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ----------------------------CccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 12212222333332 4444444433322 2334456666677777766
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCC-CCCEEECcCCcC
Q 040833 248 GNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQ-NLISLNLSNNNL 323 (503)
Q Consensus 248 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~ 323 (503)
+ .++.....+|.++.+|+.+.+..+ +..+...+|..+ +|+++++.+|.........|..++ .++.+.+..+.+
T Consensus 309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 3 355455566666666776666544 444555666666 667776666666555555555553 556666655543
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=9.6e-19 Score=176.63 Aligned_cols=207 Identities=20% Similarity=0.176 Sum_probs=138.5
Q ss_pred cCCCCCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCE
Q 040833 236 RNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLIS 315 (503)
Q Consensus 236 ~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 315 (503)
..+++|+.|++++|.++ .+|..+..+++|+.|++++|......+... ..+...+..+..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 44566777777777766 456666666677777765553110000000 000122233444555555555
Q ss_pred EE-CcCCcCcccCCc------chhc--cccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCC
Q 040833 316 LN-LSNNNLSGTIPT------EVIG--LSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386 (503)
Q Consensus 316 L~-l~~n~~~~~~~~------~~~~--~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (503)
|+ ++.|.+. .++. .+.. ...+ +.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|
T Consensus 414 L~~l~~n~~~-~L~~l~l~~n~i~~l~~~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 488 (567)
T 1dce_A 414 VDPMRAAYLD-DLRSKFLLENSVLKMEYADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL 488 (567)
T ss_dssp HCGGGHHHHH-HHHHHHHHHHHHHHHHHTTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred Ccchhhcccc-hhhhhhhhcccccccCccCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC
Confidence 55 4443322 1110 0111 1124 789999999985 455 888999999999999998 778889999999
Q ss_pred CEEECCCCcCcccCchhccCCCCCCEEeCCCCcccccc-CccCcCCCCCCeeecCCCcCcccCCCCCc----cCCCCcee
Q 040833 387 EQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRI-PKYLENFPFLQNLNLSFNHFEGEVPIKGV----FSNSSAIS 461 (503)
Q Consensus 387 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~~~l~~l~ 461 (503)
+.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++.+|.... +++|+.|+
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 999999999985 56 7889999999999999998776 88899999999999999999887764432 56676664
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.4e-16 Score=133.54 Aligned_cols=133 Identities=22% Similarity=0.233 Sum_probs=83.1
Q ss_pred CCCCEEECcCCcCc-ccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEE
Q 040833 311 QNLISLNLSNNNLS-GTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQL 389 (503)
Q Consensus 311 ~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 389 (503)
++|++|++++|.+. +.+|..+..++.+ +.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 45555555555554 3444444555555 5566666655533 445566677777777777765556666667777777
Q ss_pred ECCCCcCcccC-chhccCCCCCCEEeCCCCccccccC---ccCcCCCCCCeeecCCCcCcc
Q 040833 390 VMNGNFFQGNI-PSSLSSLRGIENLDLSRNNLSGRIP---KYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 390 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~ 446 (503)
++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 77777776432 2566677777777777777765444 356677777777777777653
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.4e-16 Score=135.59 Aligned_cols=173 Identities=20% Similarity=0.279 Sum_probs=110.2
Q ss_pred CEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCc-chhccccccceeEccCCCCccCCCcchhcCCCCCeEeCC
Q 040833 290 ITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPT-EVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDIS 368 (503)
Q Consensus 290 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 368 (503)
++++++++.++. .|..+. +++++|++++|.+.+..+. .+..++.+ ++|++++|.+++..+..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 456666666542 333222 2666666666666644332 35566666 677777777776667777778888888888
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCc-cCcCCCCCCeeecCCCcCccc
Q 040833 369 ENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPK-YLENFPFLQNLNLSFNHFEGE 447 (503)
Q Consensus 369 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~ 447 (503)
+|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++....+. .+. ..++...+.++...+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCG 164 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCC
Confidence 8888877777788888888888888888877788888888888888888887643221 010 1122233444445554
Q ss_pred CCCCCccCCCCceeccCCCCCcc
Q 040833 448 VPIKGVFSNSSAISIDGNDNLCG 470 (503)
Q Consensus 448 ~~~~~~~~~l~~l~~~~n~~~c~ 470 (503)
.| ..+......++..+...|.
T Consensus 165 ~P--~~l~~~~l~~l~~~~~~C~ 185 (192)
T 1w8a_A 165 AP--SKVRDVQIKDLPHSEFKCS 185 (192)
T ss_dssp SS--TTTTTSBGGGSCTTTCCCC
T ss_pred CC--hHHcCCChhhCcHhhcCcC
Confidence 44 3344555555656666664
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.2e-18 Score=174.04 Aligned_cols=121 Identities=25% Similarity=0.332 Sum_probs=79.0
Q ss_pred CCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECC
Q 040833 313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392 (503)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 392 (503)
|+.|++++|.+++ +|. +..++.+ +.|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|+|+
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLV-THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC-CcC-ccccccC-cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5555555555552 343 5555555 56666666665 455666677777777777777774 45 67777777777777
Q ss_pred CCcCcccC-chhccCCCCCCEEeCCCCccccccCcc---CcCCCCCCeeec
Q 040833 393 GNFFQGNI-PSSLSSLRGIENLDLSRNNLSGRIPKY---LENFPFLQNLNL 439 (503)
Q Consensus 393 ~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~l 439 (503)
+|.+++.. |..+..+++|+.|+|++|++++..+.. +..+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777655 777777777777788777777554322 234677777754
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=5.6e-16 Score=131.27 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=88.7
Q ss_pred CCCCCcEEEcccCcCC-CCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833 14 SLSKLRILAMHRNNLS-GEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY 92 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (503)
..++|++|++++|.++ +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+...+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3466777777777776 45566667777777777777777654 56777777777777777777556666666777777
Q ss_pred EEccCCCCcccCch-hhhcCCCCCCEEEccCCcccccCC---ccccCCCCCCEEecccCcCcc
Q 040833 93 ICVPVNQLQGSLPS-DLGFTLPNLEVLNLCRNQFTGPIP---ASISNASNLMRLVIAKNGFSG 151 (503)
Q Consensus 93 L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~ 151 (503)
|++++|.+. .++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 777777766 4331 223346777777777777763333 256666777777766666544
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=1.5e-15 Score=129.85 Aligned_cols=133 Identities=22% Similarity=0.300 Sum_probs=100.1
Q ss_pred CCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECC
Q 040833 313 LISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMN 392 (503)
Q Consensus 313 L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 392 (503)
.+.++++++.+. .+|..+. +.+ +.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356666666665 3443222 233 677777777775555667778888888888888886666677888888888888
Q ss_pred CCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 393 GNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 393 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+.++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 888887777777888888899998888887666677888888999999988887665
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.7e-16 Score=129.47 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=42.7
Q ss_pred hhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCccccccC---ccCcCC
Q 040833 356 FGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSGRIP---KYLENF 431 (503)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~ 431 (503)
+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 44445555555555555543444444455555555555555432 22445555555555555555554433 344555
Q ss_pred CCCCeeecC
Q 040833 432 PFLQNLNLS 440 (503)
Q Consensus 432 ~~L~~L~l~ 440 (503)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 555555554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=4.8e-15 Score=126.62 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=113.5
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN 418 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 418 (503)
+.++++++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 689999999984 44333 378999999999999777778899999999999999999777778899999999999999
Q ss_pred ccccccCccCcCCCCCCeeecCCCcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833 419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVPI-KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~ 471 (503)
++++..+..+..+++|++|++++|.+++..+. ...+++|+.+++++|++.|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99988888889999999999999999976664 355789999999999999865
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=9.8e-16 Score=126.94 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=98.0
Q ss_pred CCCCCcEEEcccCcCC-CCCCcccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCCCCcE
Q 040833 14 SLSKLRILAMHRNNLS-GEIPSSFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLSSLNY 92 (503)
Q Consensus 14 ~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 92 (503)
..+++++|++++|.++ +..|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3477888888888887 56777788888888888888888765 66888888888888888888657777777888888
Q ss_pred EEccCCCCcccCc--hhhhcCCCCCCEEEccCCcccccCC---ccccCCCCCCEEecc
Q 040833 93 ICVPVNQLQGSLP--SDLGFTLPNLEVLNLCRNQFTGPIP---ASISNASNLMRLVIA 145 (503)
Q Consensus 93 L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~ 145 (503)
|++++|.+. .++ ..+. .+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888876 333 4444 48888888888888875444 467778888887765
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=4.8e-16 Score=161.90 Aligned_cols=142 Identities=25% Similarity=0.295 Sum_probs=78.8
Q ss_pred CCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhc
Q 040833 279 IPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGI 358 (503)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~ 358 (503)
.+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.++ .+|..+..++.| +.|+|++|.|+ .+|..|..
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL-RVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC-CEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC-CEEeCcCCcCC-ccChhhcC
Confidence 3445556666666666666665 33434445666666666666665 556656666666 66666666666 44555666
Q ss_pred CCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCC-CCCEEeCCCCccccccC
Q 040833 359 LKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLR-GIENLDLSRNNLSGRIP 425 (503)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~ 425 (503)
+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+. .+..+++++|.+++..|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666666666666665 4455566666666666666666655555543321 11224555555554433
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=7e-13 Score=128.52 Aligned_cols=330 Identities=12% Similarity=0.102 Sum_probs=151.1
Q ss_pred CcccCCCC-CCCEEECCCCccccCCCccccCCCCCCEEEcccce---eeeeCCccccCCCCCcEEEccCCCCcccCchhh
Q 040833 33 PSSFGNLS-SLEALSASANQFVGQIPETLSQLKRMLYLLLGVNK---LSGEIPFSIYNLSSLNYICVPVNQLQGSLPSDL 108 (503)
Q Consensus 33 ~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 108 (503)
..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++.....+|.++..|+.+.+..+ +. .++...
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhh
Confidence 34455542 3555555433 444445555555555555555442 33333445555555555544432 22 344444
Q ss_pred hcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCC-ccCCCCCcEEEcccccCCCCCCCCcccccccc
Q 040833 109 GFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPS-LKILHKLEWVGISRNHLGNGKKDDLEFVNSLV 187 (503)
Q Consensus 109 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 187 (503)
+..+.+|+.+.+..+ ++......|..+.+|+.+.+..+ +...... +. ...|+.+.+..+... ....++.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-------i~~~af~ 202 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-------IGTNAFS 202 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-------ECTTTTT
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-------cccchhh
Confidence 444555555555432 22234444555555555555443 1111111 22 234444444332111 1112333
Q ss_pred CCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCCCCcEEEccCCcccccCCccccCCCCCCE
Q 040833 188 NASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLVNLEFLHLGGNQFTGRIPGSIVDLYKLQR 267 (503)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~~~L~~ 267 (503)
.+..++............ ...+ ...+.........+.....+..+.+... ++.....+|.++..|+.
T Consensus 203 ~c~~l~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~ 269 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAI-DNVL-----------YEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLAS 269 (394)
T ss_dssp TCTTCCEEEECCSSSCBS-SSCE-----------EEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCE
T ss_pred hccccceecccccccccc-ccee-----------ecccccccccccccccccccceEEcCCc-ceEcccceeeecccccE
Confidence 444444444333222100 0000 0000000000001112223334444322 22234455666666666
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCC
Q 040833 268 LALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQ 347 (503)
Q Consensus 268 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~ 347 (503)
+.+..+... +...+|..++.|+.+.+.. .+......+|.+|.+|+++++.++
T Consensus 270 i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-------------------------- 321 (394)
T 4gt6_A 270 VKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-------------------------- 321 (394)
T ss_dssp EECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--------------------------
T ss_pred Eecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--------------------------
Confidence 666554432 4455566666666666643 344355556666666666665432
Q ss_pred CccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833 348 LNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 348 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 420 (503)
++......|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 22233456777777888877654 55455667888888888888876543 24566777888887776654
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.57 E-value=8.8e-13 Score=127.82 Aligned_cols=334 Identities=10% Similarity=0.076 Sum_probs=213.6
Q ss_pred cccCCCcccCCCC-CCcEEEcccCcCCCCCCcccCCCCCCCEEECCCCc---cccCCCccccCCCCCCEEEcccceeeee
Q 040833 4 LVGKVPGKLGSLS-KLRILAMHRNNLSGEIPSSFGNLSSLEALSASANQ---FVGQIPETLSQLKRMLYLLLGVNKLSGE 79 (503)
Q Consensus 4 ~~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~i~~~ 79 (503)
++.+=..||.+++ .|+.+.+..+ ++.+...+|.+|++|+.+.+..+. +..+...+|..+..|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3445567899986 5999999765 777888999999999999998653 66677789999999999988765 4446
Q ss_pred CCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccCC
Q 040833 80 IPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKIL 159 (503)
Q Consensus 80 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~l 159 (503)
...+|.++.+|+.+.+..+. . .++...+..+.+|+.+.+..+ ++.....+|. ..+|+.+.+..+...-....+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTC
T ss_pred hhhhhhhhccccccccccee-e-eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhc
Confidence 67889999999999997543 3 677777778999999999765 4545555564 468999988765443333347888
Q ss_pred CCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCCC
Q 040833 160 HKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNLV 239 (503)
Q Consensus 160 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 239 (503)
..++............... . +............ .+ .. ..+..+.+.. .+.......|.++.
T Consensus 205 ~~l~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~-------~~----~~-~~~~~~~ip~-~v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNV--L----YEKSANGDYALIR-------YP----SQ-REDPAFKIPN-GVARIETHAFDSCA 265 (394)
T ss_dssp TTCCEEEECCSSSCBSSSC--E----EEECTTSCEEEEE-------CC----TT-CCCSEEECCT-TEEEECTTTTTTCS
T ss_pred cccceecccccccccccce--e----ecccccccccccc-------cc----cc-cccceEEcCC-cceEcccceeeecc
Confidence 8888887765544321110 0 0000000000000 00 00 1233333322 12224445678888
Q ss_pred CCcEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECc
Q 040833 240 NLEFLHLGGNQFTGRIPGSIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLS 319 (503)
Q Consensus 240 ~L~~L~ls~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 319 (503)
+|+.+.+..+... ....+|.++..|+.+.+.. .+..+...+|..|.+|+++++..+ ++.+...+|.+|.+|+++.+.
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 8888888765443 5567788888888888864 445466778888889999988764 555677788888888888774
Q ss_pred CCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCC
Q 040833 320 NNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGN 394 (503)
Q Consensus 320 ~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 394 (503)
.+ ++. .....|.+|++|+.+++.++.... .++..+.+|+.+.+..+
T Consensus 343 ~s-v~~-------------------------I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 343 SS-VTK-------------------------IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TT-CCB-------------------------CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred cc-cCE-------------------------EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 33 331 222345555666666666554321 24445556666655544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=1.8e-15 Score=157.55 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=77.9
Q ss_pred eCCccccCCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEecccCcCcccCCCccC
Q 040833 79 EIPFSIYNLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIPASISNASNLMRLVIAKNGFSGKVPSLKI 158 (503)
Q Consensus 79 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~l~~ 158 (503)
..+..|..++.|+.|++++|.+. .+|..++. +++|++|+|++|.++ .+|..+..+++|+.|+|++|.+...+..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 33445555556666666665555 55555553 556666666666655 5555555666666666666665543333555
Q ss_pred CCCCcEEEcccccCCCCCCCCccccccccCCCCCCEEECcCCcccccCchhHhhccccCcEEEeeccccccccchhccCC
Q 040833 159 LHKLEWVGISRNHLGNGKKDDLEFVNSLVNASRLELLQISDNNFGGMLPEAVGNLSTRLRILIVGNNQLFGNIPSGLRNL 238 (503)
Q Consensus 159 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 238 (503)
+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..|..+.........+++++|.+.+..|.
T Consensus 292 l~~L~~L~L~~N~l~~-------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~----- 359 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT-------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH----- 359 (727)
T ss_dssp GTTCSEEECCSSCCCC-------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----
T ss_pred CCCCCEEECCCCCCCc-------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-----
Confidence 6666666666665542 2333555666667777777666666665544332233455666665544333
Q ss_pred CCCcEEEccCC
Q 040833 239 VNLEFLHLGGN 249 (503)
Q Consensus 239 ~~L~~L~ls~n 249 (503)
.|+.|+++.|
T Consensus 360 -~l~~l~l~~n 369 (727)
T 4b8c_D 360 -ERRFIEINTD 369 (727)
T ss_dssp -C---------
T ss_pred -ccceeEeecc
Confidence 3444555544
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=7.9e-15 Score=125.09 Aligned_cols=134 Identities=20% Similarity=0.200 Sum_probs=102.3
Q ss_pred cccCCCCCCcEEEcccCcCCCCCCcccCCCC-CCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCccccCCC
Q 040833 10 GKLGSLSKLRILAMHRNNLSGEIPSSFGNLS-SLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIYNLS 88 (503)
Q Consensus 10 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 88 (503)
..+.++++|++|++++|.++. .+. +..+. +|++|++++|.+.+. ..|..+++|++|++++|.+....+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 356778889999999998884 454 44444 899999999988865 5788888899999998888865555568888
Q ss_pred CCcEEEccCCCCcccCch--hhhcCCCCCCEEEccCCcccccCCcc----ccCCCCCCEEecccCcCc
Q 040833 89 SLNYICVPVNQLQGSLPS--DLGFTLPNLEVLNLCRNQFTGPIPAS----ISNASNLMRLVIAKNGFS 150 (503)
Q Consensus 89 ~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~~ 150 (503)
+|++|++++|.+. .+|. .+. .+++|++|++++|.++ ..|.. +..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888886 6665 444 4888888888888887 45553 777888888888777654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.1e-15 Score=126.31 Aligned_cols=131 Identities=16% Similarity=0.258 Sum_probs=73.9
Q ss_pred cCCCCCCEEECcCCcCcccCCcchhccc-cccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCC
Q 040833 308 GKCQNLISLNLSNNNLSGTIPTEVIGLS-SLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRL 386 (503)
Q Consensus 308 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (503)
..+++|++|++++|.+. .++. +..+. .+ +.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34445555555555554 2222 22222 33 5555555555433 345556666677777776664444444666667
Q ss_pred CEEECCCCcCcccCch--hccCCCCCCEEeCCCCccccccCc----cCcCCCCCCeeecCCCcCc
Q 040833 387 EQLVMNGNFFQGNIPS--SLSSLRGIENLDLSRNNLSGRIPK----YLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 387 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~ 445 (503)
++|++++|.++ .++. .+..+++|+.|++++|++... |. .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777665 3343 566667777777777776633 33 3566677777777766654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=4.1e-14 Score=119.66 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=93.4
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN 418 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 418 (503)
+.+++++|.++. +|..+ .+++++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 678888888874 45444 378999999999999887888999999999999999999877778899999999999999
Q ss_pred ccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
++++..+..|..+++|++|++++|++.+.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997777789999999999999999998776
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=9.4e-14 Score=117.81 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=91.5
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCC
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRN 418 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 418 (503)
+.+++++|.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57788888886 4455443 78999999999998777888999999999999999999776677889999999999999
Q ss_pred ccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 419 NLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 419 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+++...+..|..+++|++|++++|++.+.++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 9997777778999999999999999997765
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.4e-13 Score=116.28 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=96.1
Q ss_pred CCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCC
Q 040833 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441 (503)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 441 (503)
.+.+++++|.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|+++...+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578999999998 5666553 7899999999999988899999999999999999999988888899999999999999
Q ss_pred CcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833 442 NHFEGEVPI-KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 442 n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~ 471 (503)
|++++..+. ...+++|+.+++++||+.|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999987763 667899999999999999975
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=2.7e-13 Score=115.02 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=95.4
Q ss_pred CCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCC
Q 040833 362 LGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSF 441 (503)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 441 (503)
-+.+++++|.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999997 6666554 7999999999999988899999999999999999999987777889999999999999
Q ss_pred CcCcccCCC-CCccCCCCceeccCCCCCccc
Q 040833 442 NHFEGEVPI-KGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 442 n~l~~~~~~-~~~~~~l~~l~~~~n~~~c~~ 471 (503)
|.+++..+. ...+++|+.+++++|++.|.+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 999977664 666899999999999999875
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=5.9e-16 Score=134.89 Aligned_cols=132 Identities=23% Similarity=0.303 Sum_probs=71.0
Q ss_pred cccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCC
Q 040833 306 SLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTR 385 (503)
Q Consensus 306 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 385 (503)
.+..+++|++|++++|.+.+ +| .+..++.+ ++|++++|.++ .++..+..+++|++|++++|.+++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 44445555555555555542 33 44444444 55555555555 334444445566666666666653 22 3555566
Q ss_pred CCEEECCCCcCcccCc-hhccCCCCCCEEeCCCCccccccCc----------cCcCCCCCCeeecCCCcCc
Q 040833 386 LEQLVMNGNFFQGNIP-SSLSSLRGIENLDLSRNNLSGRIPK----------YLENFPFLQNLNLSFNHFE 445 (503)
Q Consensus 386 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~~~~L~~L~l~~n~l~ 445 (503)
|+.|++++|.+++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|| +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666666653221 3456666666666666666544332 245566666665 45544
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=8.9e-16 Score=133.78 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=97.8
Q ss_pred cCCCCCCcEEEcccCcCCCCCCc------ccCCCCCCCEEECCCCccccCCCccccCCCCCCEEEcccceeeeeCCcccc
Q 040833 12 LGSLSKLRILAMHRNNLSGEIPS------SFGNLSSLEALSASANQFVGQIPETLSQLKRMLYLLLGVNKLSGEIPFSIY 85 (503)
Q Consensus 12 ~~~~~~L~~L~l~~n~i~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 85 (503)
+...++++.++++.+.+.+..|. .|..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34456666777777777666555 77888888888888888875 45 7788888888888888887 5666677
Q ss_pred CCCCCcEEEccCCCCcccCchhhhcCCCCCCEEEccCCcccccCC-ccccCCCCCCEEecccCcCccc
Q 040833 86 NLSSLNYICVPVNQLQGSLPSDLGFTLPNLEVLNLCRNQFTGPIP-ASISNASNLMRLVIAKNGFSGK 152 (503)
Q Consensus 86 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~ 152 (503)
.+++|++|++++|.+. .+| .+.. +++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 91 ~~~~L~~L~L~~N~l~-~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIA-SLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECC-CHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCC-cCC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 7788888888888876 455 4443 7788888888888773222 3567777888888877777554
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.37 E-value=2.8e-10 Score=109.71 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=76.4
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccc
Q 040833 258 SIVDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSL 337 (503)
Q Consensus 258 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l 337 (503)
.+..+..++.+.+..+- ..+....|..+..|+.+.+..+ +......+|..+.+|+.+.+..+ +.......|..+..+
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34444444444443332 2233344444555555555443 33344444555555555555332 222223344444444
Q ss_pred cceeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCC
Q 040833 338 SIYLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRG 409 (503)
Q Consensus 338 ~~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 409 (503)
+.+.+.++.++......|.++++|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.++..
T Consensus 289 -~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 289 -TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp -CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred -ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 55555555555455556777777777777644 54455667777777777777654 55455667776643
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.37 E-value=1.8e-10 Score=111.00 Aligned_cols=167 Identities=7% Similarity=0.028 Sum_probs=107.1
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCCcCcccCCcchhccccccc
Q 040833 260 VDLYKLQRLALEGNKFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSI 339 (503)
Q Consensus 260 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 339 (503)
.....+..+.+...... .....+..+..++.+.+..+ +......++..+..|+++.+..+ ++......+..+..+ +
T Consensus 191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-K 266 (379)
T ss_dssp CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-C
T ss_pred cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-c
Confidence 33444455554443322 44455666777777777654 34355667777778888877655 443444555566666 6
Q ss_pred eeEccCCCCccCCCcchhcCCCCCeEeCCCCcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCc
Q 040833 340 YLDLSQNQLNGPLPSNFGILKNLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNN 419 (503)
Q Consensus 340 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 419 (503)
.+.+..+ +.......|..+++|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+++..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 6776543 44455566777788888888777777666677888888888888654 55566677888888888887655
Q ss_pred cccccCccCcCCCC
Q 040833 420 LSGRIPKYLENFPF 433 (503)
Q Consensus 420 l~~~~~~~~~~~~~ 433 (503)
++.+...+|.+++.
T Consensus 344 v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 344 ITLIESGAFEGSSI 357 (379)
T ss_dssp CCEECTTTTTTSSC
T ss_pred cCEEchhHhhCCCC
Confidence 55556666766643
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=6.7e-14 Score=133.75 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=72.1
Q ss_pred CCCCEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCcccCCccc-cCCCCCCEEECcCCcCcccCCcchh----
Q 040833 263 YKLQRLALEGNKFWGEIPSSIG-----NLTLLITLNFEENMLEGSIPSSL-GKCQNLISLNLSNNNLSGTIPTEVI---- 332 (503)
Q Consensus 263 ~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~---- 332 (503)
+.|+.|++++|.++......+. ..++|++|++++|.+.......+ ..+++|++|++++|.+.......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566777777766543222221 22466666666666543322222 2234566666666655433222221
Q ss_pred -ccccccceeEccCCCCccCC----CcchhcCCCCCeEeCCCCcccccC----CccccCCCCCCEEECCCCcCccc----
Q 040833 333 -GLSSLSIYLDLSQNQLNGPL----PSNFGILKNLGAIDISENKLSGQI----PSSIGSCTRLEQLVMNGNFFQGN---- 399 (503)
Q Consensus 333 -~~~~l~~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~---- 399 (503)
..+.+ ++|++++|.+++.. +..+...++|++|+|++|.+++.. +..+..+++|++|+|++|.+++.
T Consensus 152 ~~~~~L-~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQI-TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCC-CEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCcc-ceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 12233 55555555554321 112233445555555555544321 23334444555555555555432
Q ss_pred CchhccCCCCCCEEeCCCCcccc
Q 040833 400 IPSSLSSLRGIENLDLSRNNLSG 422 (503)
Q Consensus 400 ~~~~~~~l~~L~~L~L~~n~l~~ 422 (503)
+...+..+++|++|+|++|.+++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 12222334455555555555543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=3.4e-14 Score=135.83 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCCCEEEccCCcccccCCccc-cCCCCCCEEEccCCcCcccCCccc-----cCCCCCCEEECcCCcCccc----CCcchh
Q 040833 263 YKLQRLALEGNKFWGEIPSSI-GNLTLLITLNFEENMLEGSIPSSL-----GKCQNLISLNLSNNNLSGT----IPTEVI 332 (503)
Q Consensus 263 ~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~ 332 (503)
+.|+.|++++|.+++.....+ ..+++|++|++++|.+.+.....+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 355555555555443222111 123445555555555543322222 1234555555555555421 112223
Q ss_pred ccccccceeEccCCCCccCC----CcchhcCCCCCeEeCCCCccccc----CCccccCCCCCCEEECCCCcCccc
Q 040833 333 GLSSLSIYLDLSQNQLNGPL----PSNFGILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGNFFQGN 399 (503)
Q Consensus 333 ~~~~l~~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~ 399 (503)
..+.+ ++|++++|.+++.. ...+...++|++|++++|.+++. ++..+..+++|++|+|++|.+++.
T Consensus 181 ~~~~L-~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSV-THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSC-CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCc-CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 33444 55555555554321 22233444555555555555432 122233345555555555555433
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=9.3e-12 Score=118.54 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=83.5
Q ss_pred ceeEccCC-CCccCCCcchhcCCCCCeEeCCC-CcccccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCC
Q 040833 339 IYLDLSQN-QLNGPLPSNFGILKNLGAIDISE-NKLSGQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLS 416 (503)
Q Consensus 339 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 416 (503)
..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34667776 676 4555 77777888888885 88887766778888888888888888887777788888888888888
Q ss_pred CCccccccCccCcCCCCCCeeecCCCcCcccCC
Q 040833 417 RNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVP 449 (503)
Q Consensus 417 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 449 (503)
+|+++...+..|..++ |+.|++++|++.+.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 8888866666666665 8888888888887665
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.7e-11 Score=116.64 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=94.0
Q ss_pred CeEeCCCC-cccccCCccccCCCCCCEEECCC-CcCcccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecC
Q 040833 363 GAIDISEN-KLSGQIPSSIGSCTRLEQLVMNG-NFFQGNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLS 440 (503)
Q Consensus 363 ~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 440 (503)
..++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35788888 888 5777 99999999999996 99998888899999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCCccCCCCceeccCCCCCccc
Q 040833 441 FNHFEGEVPIKGVFSNSSAISIDGNDNLCGG 471 (503)
Q Consensus 441 ~n~l~~~~~~~~~~~~l~~l~~~~n~~~c~~ 471 (503)
+|.+++..+.......|+.|++.+|++.|+|
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999977664333334999999999999976
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=5.8e-10 Score=105.56 Aligned_cols=84 Identities=13% Similarity=0.221 Sum_probs=54.0
Q ss_pred cCCCCCeEeCCCCcccccCCccc---cCCCCCCEEECCCCcCcccCch----hccCCCCCCEEeCCCCccccccCccCcC
Q 040833 358 ILKNLGAIDISENKLSGQIPSSI---GSCTRLEQLVMNGNFFQGNIPS----SLSSLRGIENLDLSRNNLSGRIPKYLEN 430 (503)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 430 (503)
.+++|++|++.+|.+++..+..+ ..+++|++|+|+.|.+++.... .+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 36778888888887764322222 2467888888888887754322 2344688888888888887554444432
Q ss_pred -CCCCCeeecCCCc
Q 040833 431 -FPFLQNLNLSFNH 443 (503)
Q Consensus 431 -~~~L~~L~l~~n~ 443 (503)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 4557777776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.4e-09 Score=103.00 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCCCCCEEECCCCcCcccCchhc---cCCCCCCEEeCCCCcccccc----CccCcCCCCCCeeecCCCcCcc
Q 040833 382 SCTRLEQLVMNGNFFQGNIPSSL---SSLRGIENLDLSRNNLSGRI----PKYLENFPFLQNLNLSFNHFEG 446 (503)
Q Consensus 382 ~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~ 446 (503)
.+++|++|++++|.+++..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 46788888888887764333332 24678888888888887643 2233456888888888887763
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=9.7e-09 Score=87.66 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=13.0
Q ss_pred cccCCCCCCEEECcCC-cCc
Q 040833 306 SLGKCQNLISLNLSNN-NLS 324 (503)
Q Consensus 306 ~~~~~~~L~~L~l~~n-~~~ 324 (503)
.+...+.|++|++++| .+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCC
T ss_pred HHhcCCCCCEEEecCCCCCC
Confidence 4556677777777777 665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.1e-08 Score=85.59 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=61.1
Q ss_pred cccCCCCCCEEEccCC-cCccc----CCccccCCCCCCEEECcCCcCcccCCcchhccccccceeEccCCCCccCCCcch
Q 040833 282 SIGNLTLLITLNFEEN-MLEGS----IPSSLGKCQNLISLNLSNNNLSGTIPTEVIGLSSLSIYLDLSQNQLNGPLPSNF 356 (503)
Q Consensus 282 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~L~l~~n~l~~~~~~~~ 356 (503)
.+...+.|++|++++| .+... ....+...++|++|++++|.+.......+ ...+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l---------------------~~~L 89 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL---------------------AEML 89 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH---------------------HHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH---------------------HHHH
Confidence 4556677777777777 66543 22334455667777777766653211111 1112
Q ss_pred hcCCCCCeEeCCCCccccc----CCccccCCCCCCEEEC--CCCcCccc----CchhccCCCCCCEEeCCCCccc
Q 040833 357 GILKNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVM--NGNFFQGN----IPSSLSSLRGIENLDLSRNNLS 421 (503)
Q Consensus 357 ~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 421 (503)
...+.|++|+|++|.+++. +..++...++|++|+| ++|.+.+. +...+...++|++|+|++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455555555555432 2334444555666666 55555532 2233344455666666666554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.52 E-value=1.7e-08 Score=83.72 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred CCCeEeCCCCcccccCCccccCCCCCCEEECCCCc-CcccCchhccCC----CCCCEEeCCCCc-cccccCccCcCCCCC
Q 040833 361 NLGAIDISENKLSGQIPSSIGSCTRLEQLVMNGNF-FQGNIPSSLSSL----RGIENLDLSRNN-LSGRIPKYLENFPFL 434 (503)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~~L 434 (503)
.|++||+++|.+++.....+.++++|+.|+|++|. +++.....+..+ ++|++|+|++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56667777766665555555667777777777763 554444445443 357777777764 665555556666777
Q ss_pred CeeecCCCc
Q 040833 435 QNLNLSFNH 443 (503)
Q Consensus 435 ~~L~l~~n~ 443 (503)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=5.9e-08 Score=80.47 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=58.5
Q ss_pred ceeEccCCCCccCCCcchhcCCCCCeEeCCCCc-ccccCCccccCC----CCCCEEECCCCc-CcccCchhccCCCCCCE
Q 040833 339 IYLDLSQNQLNGPLPSNFGILKNLGAIDISENK-LSGQIPSSIGSC----TRLEQLVMNGNF-FQGNIPSSLSSLRGIEN 412 (503)
Q Consensus 339 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 412 (503)
+.||+++|.+++.....+..+++|++|+|++|. +++.....+..+ ++|+.|+|++|. +|+.....+..+++|++
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 677777777766655666778888888888884 665444445543 468888888884 77666666777888888
Q ss_pred EeCCCCc
Q 040833 413 LDLSRNN 419 (503)
Q Consensus 413 L~L~~n~ 419 (503)
|+|++|.
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 8888885
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=1.6e-07 Score=84.12 Aligned_cols=64 Identities=23% Similarity=0.351 Sum_probs=30.4
Q ss_pred cCCCCCeEeCCCCcccc--cCCccccCCCCCCEEECCCCcCccc-CchhccCCCCCCEEeCCCCcccc
Q 040833 358 ILKNLGAIDISENKLSG--QIPSSIGSCTRLEQLVMNGNFFQGN-IPSSLSSLRGIENLDLSRNNLSG 422 (503)
Q Consensus 358 ~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 422 (503)
.+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|+|++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 34555555555555553 2233344555555555555555532 11112222 55555555555543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=1e-07 Score=85.38 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=68.3
Q ss_pred EeCCCCccc---ccCCccccCCCCCCEEECCCCcCcc--cCchhccCCCCCCEEeCCCCccccc-cCccCcCCCCCCeee
Q 040833 365 IDISENKLS---GQIPSSIGSCTRLEQLVMNGNFFQG--NIPSSLSSLRGIENLDLSRNNLSGR-IPKYLENFPFLQNLN 438 (503)
Q Consensus 365 L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ 438 (503)
++++.|... ........++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++++. ....+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 566666432 1112222467899999999999997 3456777899999999999999865 12233344 899999
Q ss_pred cCCCcCcccCCC--------CCccCCCCcee
Q 040833 439 LSFNHFEGEVPI--------KGVFSNSSAIS 461 (503)
Q Consensus 439 l~~n~l~~~~~~--------~~~~~~l~~l~ 461 (503)
+++|++.+..|. ...+++|+.|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999875542 34467777776
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.54 E-value=3.9e-05 Score=60.60 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=45.0
Q ss_pred CEEECCCCcCc-ccCchhccCCCCCCEEeCCCCccccccCccCcCCCCCCeeecCCCcCcccCCCC
Q 040833 387 EQLVMNGNFFQ-GNIPSSLSSLRGIENLDLSRNNLSGRIPKYLENFPFLQNLNLSFNHFEGEVPIK 451 (503)
Q Consensus 387 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 451 (503)
..++.+++.++ ..+|..+. ++|++|+|++|+|+.+.+..|..+++|+.|+|++|++.+.+...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 36777777775 23444332 46888888888888777777888888888888888888776543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=6.4e-05 Score=63.50 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=15.7
Q ss_pred CCCCeEeCCCCccccc----CCccccCCCCCCEEECCCC
Q 040833 360 KNLGAIDISENKLSGQ----IPSSIGSCTRLEQLVMNGN 394 (503)
Q Consensus 360 ~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n 394 (503)
+.|++|+|++|.|++. +.+++...+.|++|+|++|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 4455555555555431 2223333444555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.00015 Score=61.24 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=53.8
Q ss_pred ceeEccCC-CCccCC----CcchhcCCCCCeEeCCCCcccccC----CccccCCCCCCEEECCCCcCcccC----chhcc
Q 040833 339 IYLDLSQN-QLNGPL----PSNFGILKNLGAIDISENKLSGQI----PSSIGSCTRLEQLVMNGNFFQGNI----PSSLS 405 (503)
Q Consensus 339 ~~L~l~~n-~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~ 405 (503)
++|+|+++ .|.+.. ...+..-+.|++|+|++|.+++.. ...+...+.|++|+|++|.|.+.. .+++.
T Consensus 44 ~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~ 123 (197)
T 1pgv_A 44 KEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123 (197)
T ss_dssp CEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTT
T ss_pred cEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHh
Confidence 66666664 555321 222333456666666666665432 223334566666666666666432 23344
Q ss_pred CCCCCCEEeCCCC---ccccc----cCccCcCCCCCCeeecCCCc
Q 040833 406 SLRGIENLDLSRN---NLSGR----IPKYLENFPFLQNLNLSFNH 443 (503)
Q Consensus 406 ~l~~L~~L~L~~n---~l~~~----~~~~~~~~~~L~~L~l~~n~ 443 (503)
.-+.|++|+|++| .+... +.+.+..-+.|++|+++.|.
T Consensus 124 ~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 124 VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455666666544 23321 22334445566666665554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0038 Score=49.02 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred eEeCCCCccc-ccCCccccCCCCCCEEECCCCcCcccCchhccCCCCCCEEeCCCCcc
Q 040833 364 AIDISENKLS-GQIPSSIGSCTRLEQLVMNGNFFQGNIPSSLSSLRGIENLDLSRNNL 420 (503)
Q Consensus 364 ~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 420 (503)
.++.+++.++ ..+|..+. ++|+.|+|++|.++...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4445555443 13333322 2466666666666655555566666666666666655
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.49 E-value=2.1 Score=31.28 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=19.6
Q ss_pred ccCCCcccCCCCCCcEEEcccCcCCCCCCcccCCCCCCCEEECC
Q 040833 5 VGKVPGKLGSLSKLRILAMHRNNLSGEIPSSFGNLSSLEALSAS 48 (503)
Q Consensus 5 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 48 (503)
+.+-..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344444455555555544433 333444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.74 E-value=1.7 Score=31.83 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=27.4
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCCccccCCCCCCEEECcCC
Q 040833 274 KFWGEIPSSIGNLTLLITLNFEENMLEGSIPSSLGKCQNLISLNLSNN 321 (503)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 321 (503)
.++.+...+|.+|++|+.+.+..+ ++.+...+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344445556666666666666654 33355556666666666666543
Done!