BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040835
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 116/160 (72%), Positives = 139/160 (86%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAGQERYRA
Sbjct: 25 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 84
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+IMLVGNKSDL LRAVP
Sbjct: 85 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 144
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160
T++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIYRI
Sbjct: 145 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 247 bits (631), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 116/166 (69%), Positives = 141/166 (84%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAGQERYR
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+IMLVGNKSDL LRAVP
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
T++A+ FAEK L F+ETSAL+STNVE AF +LTEIYRIVS+K +
Sbjct: 130 TDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 175
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 245 bits (625), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 138/160 (86%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAG ERYRA
Sbjct: 13 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+IMLVGNKSDL LRAVP
Sbjct: 73 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160
T++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIYRI
Sbjct: 133 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 244 bits (622), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 114/158 (72%), Positives = 137/158 (86%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAGQERYRA
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRA 93
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+IMLVGNKSDL LRAVP
Sbjct: 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 153
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158
T++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIY
Sbjct: 154 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 241 bits (614), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/158 (71%), Positives = 136/158 (86%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAG ERYRA
Sbjct: 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 93
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+IMLVGNKSDL LRAVP
Sbjct: 94 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP 153
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158
T++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIY
Sbjct: 154 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 238 bits (608), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 135/158 (85%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAG ERYRA
Sbjct: 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+I LVGNKSDL LRAVP
Sbjct: 70 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVP 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158
T++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIY
Sbjct: 130 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 135/158 (85%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF R+EF+L+SK+TIGVEF T+++ + K +KAQIWDTAG ERYRA
Sbjct: 16 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LVYDI K +++NV RWL+ELR HAD NI+I LVGNKSDL LRAVP
Sbjct: 76 ITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVP 135
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158
T++A+ FAEK GL F+ETSAL+STNVE AF T+LTEIY
Sbjct: 136 TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 237 bits (605), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 113/170 (66%), Positives = 142/170 (83%), Gaps = 1/170 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYR 59
LIGDS VGKS LL+RF RDEF+L+SK+TIGVEF TK++ + ++K +KAQIWDTAGQERYR
Sbjct: 12 LIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYR 71
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV 119
A+TSAYYRGAVGA+LVYDITK+ SF+N+ +WL+ELR +AD NI+I+LVGNKSDL+ LR +
Sbjct: 72 AITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVI 131
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 169
DA ++A+KE L F+ETSALE+TNVELAF +L EIY + KK T N
Sbjct: 132 NDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 224 bits (571), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 133/164 (81%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++ VKAQIWDTAG ERYRA
Sbjct: 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 89
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LV+D+TK Q++ V RWL+EL HA+ I++MLVGNKSDL R VP
Sbjct: 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP 149
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164
TE+A+ FAE GL F+ETSAL+STNVELAF TVL EI+ VSK+
Sbjct: 150 TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 224 bits (571), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 108/164 (65%), Positives = 133/164 (81%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG+S VGK+ LL+RF R+EFS DS+ TIGVEF T+T+++ VKAQIWDTAG ERYRA
Sbjct: 15 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA+LV+D+TK Q++ V RWL+EL HA+ I++MLVGNKSDL R VP
Sbjct: 75 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP 134
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164
TE+A+ FAE GL F+ETSAL+STNVELAF TVL EI+ VSK+
Sbjct: 135 TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/206 (52%), Positives = 137/206 (66%), Gaps = 3/206 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF ++EF++DSK+TIGVEF T+TL I K +KAQIWDTAGQERYRA
Sbjct: 18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA 77
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA++VYDI+K S++N WL ELR +AD N+ + L+GNKSDL LRAVP
Sbjct: 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP 137
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTANDXXXXXXXXXX 180
TE++K FA++ L F ETSAL S NV+ AF ++ IY+ VSK + D
Sbjct: 138 TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGA 197
Query: 181 XKATNIVV---PGQEPESGRRSYNCC 203
+ P NCC
Sbjct: 198 SAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/163 (60%), Positives = 129/163 (79%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL+RF DEF+++SK+TIGVEF T+T+ + +K +KAQIWDTAG ERYRA
Sbjct: 15 LIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRA 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYRGAVGA++VYDI+K S++N WL ELR +AD N+ + L+GNKSDL LRAVP
Sbjct: 75 ITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVP 134
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
T++AK FA + + F ETSAL S NV+ AF ++ I+++VSK
Sbjct: 135 TDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSK 177
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 112/158 (70%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IGD+ VGKS LL +F F TIGVEF + + I K +K QIWDTAGQE +R+
Sbjct: 15 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T +YYRGA GA+LVYDIT+R +F+++ WLE+ R H++ N++IML+GNKSDLE+ R V
Sbjct: 75 ITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVK 134
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158
E+ + FA + GL FMETSA ++NVE AF+ EIY
Sbjct: 135 KEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY 172
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 114/163 (69%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IGD+ VGKS LL +F F TIGVEF + + I K +K QIWDTAGQE +R+
Sbjct: 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T +YYRGA GA+LVYDIT+R++F+++ WLE+ R H+ N++IML+GNKSDLE+ R V
Sbjct: 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK 145
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
E+ + FA + GL FMETSA + NVE AF+ EIYR + +
Sbjct: 146 REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 173 bits (438), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 14 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++S+ NV +WL+E+ +A +N+ +LVGNKSDL T + V
Sbjct: 74 ITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 133
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE AF+T+ EI
Sbjct: 134 NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 121/166 (72%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG+S VGKS LL RF+ D ++ D +TIGV+F+ KT+ + K VK QIWDTAGQER+R
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRG+ G ++VYD+T ++SF+ V WL+E+ +A ++ +LVGNK DL+ R V
Sbjct: 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
+ AKEFA+ + F+ETSAL+STNVE AFLT+ +I +S++ L
Sbjct: 133 YDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 14 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++S+ NV +WL+E+ +A +N+ +LVGNKSDL T + V
Sbjct: 74 ITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVD 133
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE AF+T+ EI
Sbjct: 134 NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 140
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 141 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 172 bits (437), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 121/166 (72%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG+S VGKS LL RF+ D ++ D +TIGV+F+ KT+ + K VK QIWDTAGQER+R
Sbjct: 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRG+ G ++VYD+T ++SF+ V WL+E+ +A ++ +LVGNK DL+ R V
Sbjct: 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
+ AKEFA+ + F+ETSAL+STNVE AFLT+ +I +S++ L
Sbjct: 133 YDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 172 bits (437), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 4 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 63
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 64 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 123
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 124 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 11 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 71 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 131 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 11 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 71 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 131 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 30 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 89
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 90 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 149
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 150 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGK+ LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 21 LIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 80
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 140
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 141 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 112/159 (70%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IGD VGKS LL +F +F D TIGVEF T+ + + + +K QIWDTAGQER+RA
Sbjct: 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA 79
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
VT +YYRGA GA++VYDIT+R ++++++ WL + R + N +I+L+GNK+DLE R V
Sbjct: 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 139
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159
E+AK+FAE+ GL F+E SA NVE AFL +IY+
Sbjct: 140 YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 115/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + +K VK QIWDTAGQER+R
Sbjct: 14 LIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRT 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T R SFDNV +W++E+ +A +N+ +LVGNK DL + R V
Sbjct: 74 ITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVT 133
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+++ +E A+ G+ F+ETSA + NVE AF T+ EI
Sbjct: 134 SDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 116/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG+S VGKS LL RF+ D ++ D +TIGV+F+ KT+ + K VK QIWDTAGQER+R
Sbjct: 26 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT 85
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRG+ G ++VYD+T ++SF+ V WL+E+ +A ++ +LVGNK DL+ R V
Sbjct: 86 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVE 145
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+ AKEFA+ + F+ETSAL+STNVE AFLT+ +I
Sbjct: 146 YDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 114/157 (72%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 97
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T + V
Sbjct: 98 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD 157
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F T EI
Sbjct: 158 YTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 169 bits (427), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 111/159 (69%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IGD VGKS LL +F +F D TIGVEF T+ + + + +K QIWDTAGQ R+RA
Sbjct: 35 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRA 94
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
VT +YYRGA GA++VYDIT+R ++++++ WL + R + N +I+L+GNK+DLE R V
Sbjct: 95 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT 154
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159
E+AK+FAE+ GL F+E SA NVE AFL +IY+
Sbjct: 155 YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 115/157 (73%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 13 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVG K DL T + V
Sbjct: 73 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVD 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
AKEFA+ G+ F+ETSA +TNVE +F+T+ EI
Sbjct: 133 YTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD++VGK+ ++ RF FS +TIGV+F KTL I K VK QIWDTAGQER+R
Sbjct: 34 LVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRT 93
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T +YYR A GA+L YDITKR SF +V W+E++R +A NI+ +L+GNKSDL LR V
Sbjct: 94 ITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS 153
Query: 121 TEDAKEFAEK-EGLCFMETSALESTNVELAFLTVLTEI 157
+A+ AE + LC +ETSA +S+NVE AFL V TE+
Sbjct: 154 LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 110/164 (67%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGK+ +L RF+ D F+ +TIG++F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 11 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G MLVYDIT +SFDN+ W+ + HA ++ M++GNK D+ R V
Sbjct: 71 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164
E ++ A G+ FMETSA + NVE AF T+ +I + KK
Sbjct: 131 KERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 174
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/161 (50%), Positives = 111/161 (68%), Gaps = 4/161 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG + GKS LL +F ++F DS TIGVEF ++ + + K VK QIWDTAGQER+R+
Sbjct: 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS 89
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
VT +YYRGA GA+LVYDIT R++++++A WL + R A NI+++L GNK DL+ R V
Sbjct: 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVT 149
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL----TVLTEI 157
+A FA++ L F+ETSAL NVE AFL T+L +I
Sbjct: 150 FLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 107/157 (68%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGK+ +L RF+ D F+ +TIG++F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G MLVYDIT +SFDN+ W+ + HA ++ M++GNK D+ R V
Sbjct: 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
E ++ A G+ FMETSA + NVE AF T+ +I
Sbjct: 133 KERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RF D+F+ TIG++F+ KT+ I+ K VK QIWDTAGQER+R
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G +LVYDIT ++F N+ +W + + HA+ ++LVGNKSD+ET R V
Sbjct: 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVT 126
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
+ + A++ G+ F+E+SA NV F T+
Sbjct: 127 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 156 bits (394), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 107/157 (68%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG++ GKS LL +F +F DS TIGVEF +K + + K VK QIWDTAGQER+R+
Sbjct: 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
VT +YYRGA GA+LVYDIT R++++ + WL + R A +NI+I+L GNK DL+ R V
Sbjct: 75 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT 134
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+A FA++ L F+ETSAL NVE AF+ +I
Sbjct: 135 FLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RF D+F+ TIG++F+ KT+ I+ K VK Q+WDTAGQER+R
Sbjct: 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 84
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G +LVYD+T ++F N+ +W + + HA+ ++LVGNKSD+ET R V
Sbjct: 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVT 143
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
+ + A++ G+ F+E+SA NV F T+
Sbjct: 144 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RF D+F+ TIG++F+ KT+ I+ K VK Q+WDTAGQER+R
Sbjct: 12 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G +LVYD+T ++F N+ +W + + HA+ ++LVGNKSD+ET R V
Sbjct: 72 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVT 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
+ + A++ G+ F+E+SA NV F T+
Sbjct: 131 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 163
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 76/153 (49%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RF D+F+ TIG++F+ KT+ I+ K VK QIWDTAGQER+R
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA G +LVYDIT ++F N+ +W + + HA+ ++LVGNKSD ET R V
Sbjct: 68 ITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-RVVT 126
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
+ + A++ G+ F+E+SA NV F T+
Sbjct: 127 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 104/150 (69%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG+S+VGK+ L R+A D F+ +T+G++F+ KT+ H K VK QIWDTAGQERYR
Sbjct: 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT 87
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G +L+YDIT +SF+ V W +++ ++ N ++LVGNK D+E R VP
Sbjct: 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVP 147
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
TE + AE+ G F E SA E+ +V AF
Sbjct: 148 TEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 107/157 (68%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG++ GKS LL +F +F DS TIGVEF +K + + K VK QIWDTAGQER+R+
Sbjct: 16 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRS 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
VT +YYRGA GA+LVYDIT R++++ + WL + R A +NI+I+L GNK DL+ R V
Sbjct: 76 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT 135
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+A FA++ L F+ETSAL +VE AF+ +I
Sbjct: 136 FLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 106/160 (66%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GKS L+ RF +D+F ++TIG F ++TL ++ VK +IWDTAGQERY +
Sbjct: 17 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++V+D+T + SF+ +W++EL+ + N+++ L GNKSDL R V
Sbjct: 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT 136
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160
EDA+ +A++ GL FMETSA +TNV+ F + + R+
Sbjct: 137 AEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/150 (48%), Positives = 102/150 (68%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG+S+VGK+ L R+A D F+ +T+G++F+ KT+ H K +K QIWDTAGQERYR
Sbjct: 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT 86
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G +L+YDI ++SF V W +++ ++ N ++LVGNK DLE R VP
Sbjct: 87 ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP 146
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
ED + A+ G F E SA E+ NV+ F
Sbjct: 147 AEDGRRLADDLGFEFFEASAKENINVKQVF 176
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RF D+F+ TIG++F+ KT+ I+ K VK Q+WDTAGQER+R
Sbjct: 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA G +LVYD+T ++F N+ +W + + HA+ ++LVGNKSD ET R V
Sbjct: 68 ITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXET-RVVT 126
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
+ + A++ G+ F+E+SA NV F T+
Sbjct: 127 ADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IGDS VGKS LL RFA + FS TIGV+F+ +T+ I+ + VK QIWDTAGQER+R
Sbjct: 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TS YYRG G ++VYD+T +SF NV RWL E+ + D ++ +LVGNK+D + V
Sbjct: 74 ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVE 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
TEDA +FA + G+ ETSA E+ NVE F +TE+
Sbjct: 133 TEDAYKFAGQMGIQLFETSAKENVNVEEMF-NCITEL 168
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/151 (50%), Positives = 104/151 (68%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG++ GKS LL +F +F DS TIGVEF +K + + K VK QIWDTAG ER+R+
Sbjct: 13 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRS 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
VT +YYRGA GA+LVYDIT R++++ + WL + R A +NI+I+L GNK DL+ R V
Sbjct: 73 VTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+A FA++ L F+ETSAL +VE AF+
Sbjct: 133 FLEASRFAQENELMFLETSALTGEDVEEAFV 163
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 103/157 (65%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD+ VGKS ++ RF +D F + TIG F TKT+ ++ K IWDTAGQER+ +
Sbjct: 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS 87
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRG+ A++VYDITK+ SF + +W++EL+ H +NI++ + GNK DL +R VP
Sbjct: 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP 147
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+DAKE+AE G +ETSA + N+E F + +I
Sbjct: 148 LKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 100/153 (65%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 100/153 (65%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 12 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 72 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 132 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59
L+GDS VGK+ LL RF F + +T+G++F+ K L + VK Q+WDTAGQER+R
Sbjct: 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV 119
+VT AYYR A +L+YD+T + SFDN+ WL E+ +A ++ +ML+GNK D R V
Sbjct: 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVV 134
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159
ED ++ A++ GL FMETSA NV+LAF + E+ R
Sbjct: 135 KREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+S VGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 11 LLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 103/150 (68%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG+S+VGK+ L R+A D F+ +T+G++F+ KT+ + K +K QIWDTAGQERYR
Sbjct: 10 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRT 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA+G +L+YDIT +SF+ V W +++ ++ N ++LVGNK D+E R V
Sbjct: 70 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
+E ++ A+ G F E SA ++ NV+ F
Sbjct: 130 SERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 111/160 (69%), Gaps = 1/160 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG VGK+ L+ RF D F K+T+GV+F+ KT+ + K ++ QIWDTAGQER+ +
Sbjct: 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS 90
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+TSAYYR A G +LVYDITK+++FD++ +W++ + +A ++ ++LVGNK D ET R +
Sbjct: 91 ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT 150
Query: 121 TEDAKEFAEK-EGLCFMETSALESTNVELAFLTVLTEIYR 159
+ ++FA++ G+ F E SA ++ NV+ FL ++ +I +
Sbjct: 151 RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+S VGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 11 LLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+S VGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 11 LLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+S VGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 11 LLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+S VGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 11 LLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 131 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 105/169 (62%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIG++ VGK+ L+ RF + F ATIGV+F KT+ I+ + VK QIWDTAGQER+R+
Sbjct: 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T +YYR A +L YDIT +SF + WL E+ +A +I +LVGNK DL R V
Sbjct: 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS 150
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKALTAN 169
+ A+EF+E + + ++ETSA ES NVE FL + + + L N
Sbjct: 151 QQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNN 199
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 100/153 (65%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 8 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +F W++EL+ A NI+I L GNK+DL + RAV
Sbjct: 68 LAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVE 127
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA + NV F+ +
Sbjct: 128 FQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 8/164 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAGQERY +
Sbjct: 12 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 72 LAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164
++A+ +A+ L F ETSA S NV EI+ ++KK
Sbjct: 132 FQEAQSYADDNSLLFXETSAKTSXNV--------NEIFXAIAKK 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAG ERY +
Sbjct: 10 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHS 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +SF W++EL+ A NI+I L GNK+DL RAV
Sbjct: 70 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA S NV F+ +
Sbjct: 130 FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 100/153 (65%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+++ + VK +IWDTAGQERY +
Sbjct: 13 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHS 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +++F W++EL+ A +I+I L GNK+DL R V
Sbjct: 73 LAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVE 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
E+A+ +A+ L FMETSA + NV FL +
Sbjct: 133 YEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TIG F T+T+ + VK +IWDTAG ERY +
Sbjct: 10 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHS 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +F W++EL+ A NI+I L GNK+DL + RAV
Sbjct: 70 LAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVE 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA + NV F+ +
Sbjct: 130 FQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 99/153 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+SAVGKS L+ RF + +F ++TI F T+T+ + VK +IWDTAGQERY +
Sbjct: 10 LLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRGA A++VYDIT +F W++EL+ A NI+I L GNK+DL + RAV
Sbjct: 70 LAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVE 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +A+ L FMETSA + NV F+ +
Sbjct: 130 FQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 96/153 (62%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD+ VGKS ++ RF D F + TIG F TKT+ ++ K IWDTAGQER+RA
Sbjct: 10 LLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRA 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRG+ A++VYDITK ++F + W+ ELR H +I++ + GNK DL +R V
Sbjct: 70 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM 129
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
DAK++A+ F+ETSA + N+ F+ +
Sbjct: 130 ERDAKDYADSIHAIFVETSAKNAININELFIEI 162
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 139 bits (351), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG+S+VGK+ L R+A D F+ +T+G++F+ KT+ + K +K QIWDTAG ERYR
Sbjct: 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRT 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T+AYYRGA G +L YDIT +SF+ V W +++ ++ N ++LVGNK D E R V
Sbjct: 73 ITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVS 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
+E ++ A+ G F E SA ++ NV+ F
Sbjct: 133 SERGRQLADHLGFEFFEASAKDNINVKQTF 162
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 95/153 (62%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD+ VGKS ++ RF D F + TIG F TKT+ ++ K IWDTAG ER+RA
Sbjct: 11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYRG+ A++VYDITK ++F + W+ ELR H +I++ + GNK DL +R V
Sbjct: 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
DAK++A+ F+ETSA + N+ F+ +
Sbjct: 131 ERDAKDYADSIHAIFVETSAKNAININELFIEI 163
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 100/150 (66%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ AVGK+ ++ RF D F + ++TIG++F +KTL + V+ Q+WDTAGQER+R+
Sbjct: 6 FLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRS 65
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT RQSF+N +W++++ K++II LVGNK+DL LR V
Sbjct: 66 LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVT 125
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
E+ + A++ F ETSA N+++ F
Sbjct: 126 YEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 88/115 (76%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
LIGDS VGKS LL RFA D ++ +TIGV+F+ +T+ + K +K QIWDTAGQER+R
Sbjct: 3 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT 62
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115
+TS+YYRGA G ++VYD+T ++SF+NV +WL+E+ +A +N+ +LVGNK DL T
Sbjct: 63 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 117
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G++AVGKS ++ RF ++F+ + + TIG F T+ + I+ VK +IWDTAGQER+ +
Sbjct: 8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDL---ETLR 117
+ YYR A A++VYD+TK QSF W++EL A K+III LVGNK D R
Sbjct: 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGER 127
Query: 118 AVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
V E+ ++ AE++GL F ETSA NV FL +
Sbjct: 128 KVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGI 163
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+IG+S VGKS LL RF D F + ATIGV+F+ KT+ + K IWDTAGQER+R
Sbjct: 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIII-MLVGNKSDLETLRAV 119
+T +YYRGA G +LVYD+T+R +F + WL EL + +N I+ LVGNK D E R V
Sbjct: 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN-REV 138
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+ +FA K F+E SA V+ AF ++ +I
Sbjct: 139 DRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 134 bits (338), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 99/150 (66%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + V+ Q+WDTAGQER+R+
Sbjct: 19 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 78
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF ++W++++R ++IIMLVGNK+DL R V
Sbjct: 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVS 138
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
TE+ + A++ + F+ETSA NV+ F
Sbjct: 139 TEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 99/150 (66%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + V+ Q+WDTAGQER+R+
Sbjct: 7 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF ++W++++R ++IIMLVGNK+DL R +
Sbjct: 67 LIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQIT 126
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
E+ ++ A++ + F+ETSA NV+ F
Sbjct: 127 IEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 6/165 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L GD+AVGKS L R ++EF + AT+GV+FQ KTL++ + Q+WDTAGQER+R+
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS 92
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDL------E 114
+ +Y+R A G +L+YD+T +SF N+ W++ + A + + IMLVGNK+D+ E
Sbjct: 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATE 152
Query: 115 TLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159
+ VP ++ A G F ETSA + +N+ A L + E+ +
Sbjct: 153 GQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 97/150 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + ++ Q+WDTAGQER+R+
Sbjct: 11 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF +W++++R ++IIMLVGNK+DL R V
Sbjct: 71 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
E+ + A++ + F+ETSA NV+ F
Sbjct: 131 IEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 97/150 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + V+ Q+WDTAGQER+R+
Sbjct: 6 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 65
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF +W++++R ++IIMLVGNK+DL R V
Sbjct: 66 LIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS 125
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
E+ + A++ + F+ETSA NV+ F
Sbjct: 126 IEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 106/169 (62%), Gaps = 11/169 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH----------HKNVKAQIWD 51
+GDS VGK+ +L ++ +F+ T+G++F+ K +V + + Q+WD
Sbjct: 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76
Query: 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNK 110
TAG ER+R++T+A++R A+G +L++D+T QSF NV W+ +L+ HA +N I+L GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159
SDLE RAV E+A+E AEK G+ + ETSA TN+ A +L I +
Sbjct: 137 SDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 97/153 (63%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + ++ Q+WDTAG ER+R+
Sbjct: 18 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF +W++++R ++IIMLVGNK+DL R V
Sbjct: 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS 137
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
E+ + A++ + F+ETSA NV+ F V
Sbjct: 138 IEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 96/150 (64%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + V+ Q+WDTAG ER+R+
Sbjct: 11 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRS 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF +W++++R ++IIMLVGNK+DL R V
Sbjct: 71 LIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAF 150
E+ + A++ + F+ETSA NV+ F
Sbjct: 131 IEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 107/169 (63%), Gaps = 11/169 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN----------VKAQIWD 51
+GDS VGK+ L R+ ++F+ T+G++F+ K +V + + V Q+WD
Sbjct: 31 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWD 90
Query: 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNK 110
TAGQER+R++T+A++R A+G +L++D+T +QSF NV W+ +L+ +A +N I+L+GNK
Sbjct: 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 150
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159
+DL R V A+E A+K G+ + ETSA NVE A T+L I +
Sbjct: 151 ADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 97/153 (63%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G+ +VGK+ L+ RF D F +ATIG++F +KT+ + + V+ Q+WDTAG ER+R+
Sbjct: 21 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRS 80
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ +Y R + A++VYDIT SF +W++++R ++IIMLVGNK+DL R V
Sbjct: 81 LIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS 140
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
E+ + A++ + F+ETSA NV+ F V
Sbjct: 141 IEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 173
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 11/173 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN----------VKAQIWD 51
+GDS VGK+ L R+ ++F+ T+G++F+ K +V + V Q+WD
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNK 110
TAG ER+R++T+A++R A+G +L++D+T +QSF NV W+ +L+ +A +N I+L+GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 136
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
+DL R V A+E AEK G+ + ETSA NVE + T+L I + + K
Sbjct: 137 ADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 107/173 (61%), Gaps = 11/173 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN----------VKAQIWD 51
+GDS VGK+ L R+ ++F+ T+G++F+ K +V + V Q+WD
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNK 110
TAG ER+R++T+A++R A+G +L++D+T +QSF NV W+ +L+ +A +N I+L+GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNK 136
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
+DL R V A+E AEK G+ + ETSA NVE + T+L I + + K
Sbjct: 137 ADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 90/153 (58%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+ VGK+ L+ R+ ++F+ T+G F TK L I K V IWDTAGQER+ A
Sbjct: 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYR + GA+LVYDIT SF V W++ELR I + +VGNK DLE R V
Sbjct: 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +AE G TSA ++ +E FL +
Sbjct: 131 IQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 89/153 (58%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+ VGK+ L+ R+ ++F+ T+ F TK L I K V IWDTAGQER+ A
Sbjct: 25 LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 84
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYR + GA+LVYDIT SF V W++ELR I + +VGNK DLE R V
Sbjct: 85 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 144
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +AE G TSA ++ +E FL +
Sbjct: 145 IQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 177
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 103/173 (59%), Gaps = 11/173 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN----------VKAQIWD 51
+GDS VGK+ L R+ ++F+ T+G++F+ K +V + V Q+WD
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNK 110
TAG ER+R++T+A++R A G +L +D+T +QSF NV W +L+ +A +N I+L+GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNK 136
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
+DL R V A+E AEK G+ + ETSA NVE + T+L I + K
Sbjct: 137 ADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 103/173 (59%), Gaps = 11/173 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN----------VKAQIWD 51
+GDS VGK+ L R+ ++F+ T+G++F+ K +V + V Q+WD
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNK 110
TAG ER+R++T+A++R A G +L +D+T +QSF NV W +L+ +A +N I+L+GNK
Sbjct: 77 TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNK 136
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
+DL R V A+E AEK G+ + ETSA NVE + T+L I + K
Sbjct: 137 ADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 89/153 (58%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G+ VGK+ L+ R+ ++F+ T+ F TK L I K V IWDTAGQER+ A
Sbjct: 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHA 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YYR + GA+LVYDIT SF V W++ELR I + +VGNK DLE R V
Sbjct: 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS 130
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153
++A+ +AE G TSA ++ +E FL +
Sbjct: 131 IQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS VGK+ L+ ++ +FS KATIG +F TK +++ + V QIWDTAGQER+++
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ A+YRGA +LV+D+T +F + W +E A +N +++GNK DLE
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN- 131
Query: 117 RAVPTEDAKEFA-EKEGLCFMETSALESTNVELAFLTV 153
R V T+ A+ + K + + ETSA E+ NVE AF T+
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR- 59
+IGDS VGK+ L RF F ++ATIGV+F+ + + I + +K Q+WDTAGQER+R
Sbjct: 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 84
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKN-IIIMLVGNKSDLETLRA 118
++ YYR + VYD+T SF ++ W+EE + H N I +LVGNK DL +
Sbjct: 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 144
Query: 119 VPTEDAKEFAEKEGLCFMETSAL---ESTNVELAFLTV 153
VPT+ A++FA+ + ETSA ++ +VE F+T+
Sbjct: 145 VPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS VGK+ L+ ++ +FS KATIG +F TK +++ + V QIWDTAGQER+++
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ A+YRGA +LV+D+T +F + W +E A +N +++GNK DLE
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN- 131
Query: 117 RAVPTEDAKEFA-EKEGLCFMETSALESTNVELAFLTV 153
R V T+ A+ + K + + ETSA E+ NVE AF T+
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS VGK+ L+ ++ +FS KATIG +F TK +++ + V QIWDTAGQER+++
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ A+YRGA +LV+D+T +F + W +E A +N +++GNK D E
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFEN- 131
Query: 117 RAVPTEDAKEFA-EKEGLCFMETSALESTNVELAFLTV 153
R V T+ A+ + K + + ETSA E+ NVE AF T+
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 6/155 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD VGKS L+ R+ ++F + TIGVEF + L + + V QIWDTAGQER+++
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKS 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ + +YRGA +L + + RQSF+N+ W +E +AD ++ +++GNK D E
Sbjct: 72 LRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKED- 130
Query: 117 RAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V TE+A+ + + G ++ETSA + TNV +AF
Sbjct: 131 RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR- 59
+IGDS VGK+ L RF F ++ATIGV+F+ + + I + +K Q+WDTAGQER+R
Sbjct: 34 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK 93
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIII-MLVGNKSDLETLRA 118
++ YYR + VYD T SF ++ W+EE + H N I +LVGNK DL +
Sbjct: 94 SMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ 153
Query: 119 VPTEDAKEFAEKEGLCFMETSAL---ESTNVELAFLTV 153
VPT+ A++FA+ ETSA ++ +VE F T+
Sbjct: 154 VPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTL 191
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS VGK+ L+ ++ +FS KATIG +F TK +++ + V QIWDTAG ER+++
Sbjct: 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQS 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ A+YRGA +LV+D+T +F + W +E A +N +++GNK DLE
Sbjct: 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN- 131
Query: 117 RAVPTEDAKEFA-EKEGLCFMETSALESTNVELAFLTV 153
R V T+ A+ + K + + ETSA E+ NVE AF T+
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD VGKS L+ R+ ++F TIGVEF K L + V QIWDTAGQER+R+
Sbjct: 16 LLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ + +YRG+ +L + + QSF N++ W +E +AD ++ +++GNK+D++
Sbjct: 76 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKE- 134
Query: 117 RAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V TE+A+ + + G + ETSA +STNV AF
Sbjct: 135 RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 96/157 (61%), Gaps = 7/157 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKA-QIWDTAGQERYR 59
++GDS VGK+ L+ R+ D++S KATIG +F TK + + V Q+WDTAGQER++
Sbjct: 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 72
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKN----IIIMLVGNKSDLET 115
++ A+YRGA +LVYD+T SF+N+ W +E HA+ N +++GNK D E
Sbjct: 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132
Query: 116 LRAVPTE-DAKEFAEKEG-LCFMETSALESTNVELAF 150
+ + +E A+E A+ G + TSA + NV+ AF
Sbjct: 133 SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD VGKS L+ R+ ++F TIGVEF K L + V QIWDTAGQER+R+
Sbjct: 14 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ + +YRG+ +L + + QSF N++ W +E +AD ++ +++GNK D+
Sbjct: 74 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE- 132
Query: 117 RAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V TE+A+ + G + ETSA ++TNV AF
Sbjct: 133 RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 93/155 (60%), Gaps = 6/155 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD VGKS L+ R+ ++F TIGVEF K L + V QIWDTAGQER+R+
Sbjct: 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ + +YRG+ +L + + QSF N++ W +E +AD ++ +++GNK D+ +
Sbjct: 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI-SE 130
Query: 117 RAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V TE+A+ + G + ETSA ++TNV AF
Sbjct: 131 RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G+ AVGKS ++ R+ + F+ D K TIGV+F + + ++ ++V+ +WDTAGQE + A
Sbjct: 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+T AYYRGA +LV+ T R+SF+ ++ W E++ +I LV NK DL +
Sbjct: 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIK 128
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
E+A+ A++ L F TS E NV +E+++ +++K L
Sbjct: 129 NEEAEGLAKRLKLRFYRTSVKEDLNV--------SEVFKYLAEKHL 166
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAGQE Y A
Sbjct: 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQEDYAA 77
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y+R G + V+ IT+ +SF A + E+ LR D+N+ +LVGNKSDLE R V
Sbjct: 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 137
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
E+AK AE+ + ++ETSA NV+ F ++ EI
Sbjct: 138 SVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAGQE Y A
Sbjct: 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQEDYAA 81
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y+R G + V+ IT+ +SF A + E+ LR D+N+ +LVGNKSDLE R V
Sbjct: 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 141
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
E+AK AE+ + ++ETSA NV+ F ++ EI
Sbjct: 142 SVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAGQE Y A
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQEDYAA 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y+R G + V+ IT+ +SF A + E+ LR D+N+ +LVGNKSDLE R V
Sbjct: 70 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 129
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
E+AK AE+ + ++ETSA NV+ F ++ EI
Sbjct: 130 SVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAG E Y A
Sbjct: 12 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLEDYAA 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKN-IIIMLVGNKSDLETLRA 118
+ Y+R G +LV+ IT+ +SF A + E+ LR A+++ I +++VGNKSDLE R
Sbjct: 71 IRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ 130
Query: 119 VPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
VP E+A+ AE+ G+ ++ETSA NV+ F ++ EI
Sbjct: 131 VPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAG E Y A
Sbjct: 8 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLEDYAA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKN-IIIMLVGNKSDLETLRA 118
+ Y+R G +LV+ IT+ +SF A + E+ LR A+++ I +++VGNKSDLE R
Sbjct: 67 IRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ 126
Query: 119 VPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
VP E+A+ AE+ G+ ++ETSA NV+ F ++ EI
Sbjct: 127 VPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAGQE Y A
Sbjct: 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQEDYAA 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y+R G + V+ IT+ +SF A + E+ LR D+N+ +LVGNKSDLE R V
Sbjct: 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 127
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
E+AK A++ + ++ETSA NV+ F ++ EI
Sbjct: 128 SVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 40/196 (20%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-------------------- 40
L+G+S+VGKS ++ R +D F ++ TIG F T + +
Sbjct: 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSI 71
Query: 41 -----------HHK------NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQS 83
H+ N+K IWDTAGQERY ++ YYRGA A++V+DI+ +
Sbjct: 72 NDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT 131
Query: 84 FDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALES 143
D W+ +L+ N II+LV NK D + V + +++A+ L F++TSA
Sbjct: 132 LDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQTSAKTG 188
Query: 144 TNVELAFLTVLTEIYR 159
TN++ F + EIY+
Sbjct: 189 TNIKNIFYMLAEEIYK 204
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F DEF D + T ++ K +V+ + V+ I DTAG E Y A
Sbjct: 11 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGLEDYAA 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y+R G + V+ IT+ +SF A + E+ LR D+N+ +LVGNKSDLE R V
Sbjct: 70 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQV 129
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
E+AK AE+ + ++ETSA NV+ F ++ EI
Sbjct: 130 SVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYR 59
++GD A GK+ L FA++ F K TIG++F + + + + NV QIWD GQ
Sbjct: 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG 70
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARW---LEELRGHADKNIIIMLVGNKSDLETL 116
+ Y GA G +LVYDIT QSF+N+ W ++++ ++ ++ LVGNK DLE +
Sbjct: 71 KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130
Query: 117 RAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160
R + E F ++ G SA +V L F V EI I
Sbjct: 131 RTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 1/152 (0%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNV-KAQIWDTAGQERYR 59
LIGD VGK+ + R F + AT+G T + NV K +WDTAGQE+
Sbjct: 16 LIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKA 75
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV 119
+ YY GA GA+L +D+T R + N+ARW++E + I++ NK D++ + +
Sbjct: 76 VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI 135
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ E + + + E SA + N L FL
Sbjct: 136 SKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L + ++ F + TI ++ K +VI + I DTAGQE Y A
Sbjct: 9 VVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ Y R G + V+ I +SF+++ + E+++ D +++ ++LVGNKSDL + R V
Sbjct: 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTV 126
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
T+ A++ A G+ F+ETSA V+ AF T++ EI
Sbjct: 127 DTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE+Y
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ R V
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD-RKVK 132
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 133 AKSI-VFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 8 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 68 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 124
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 125 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 155
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L + ++ F + TI ++ K +VI + I DTAGQE Y A
Sbjct: 9 VVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ Y R G + V+ I +SF+++ + E+++ D +++ ++LVGNK DL + R V
Sbjct: 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTV 126
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
T+ A++ A G+ F+ETSA V+ AF T++ EI
Sbjct: 127 DTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 20 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 79
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 136
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 137 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF ATIGVE + + +K +WDTAG E++
Sbjct: 10 LVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGG 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ R V
Sbjct: 70 LRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE-RKVK 127
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 128 AKTI-TFHRKKNLQYYDISAKSNYNFEKPFL 157
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF ATIGVE + + +K +WDTAG E++
Sbjct: 9 LVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGG 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ R V
Sbjct: 69 LRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKE-RKVK 126
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 127 AKTI-TFHRKKNLQYYDISAKSNYNFEKPFL 156
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF ATIGVE + + +K +WDTAG E++
Sbjct: 17 LVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEKFGG 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 77 LRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDVKERKV-- 133
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
F K+ L + + SA + N E FL
Sbjct: 134 KAKTITFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++ +D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF T+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGK+ L +F EFS T+ + +K + + + DTAGQ+ Y
Sbjct: 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSI 87
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNKSDLETLRAV 119
+ ++ G G +LVY +T SF + ++L GH + ++LVGNK+DL R V
Sbjct: 88 LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV 147
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160
+ K+ AE G FME+SA E+ + F V+ EI R+
Sbjct: 148 QAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF T+GVE + +K +WDTAGQE++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAG E++
Sbjct: 11 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGG 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 71 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 127
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 128 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 158
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAG E++
Sbjct: 17 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGG 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 77 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 133
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 134 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L + ++ F + TI ++ K +VI + I DTAGQE Y A
Sbjct: 8 VVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAV 119
+ Y R G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTV 125
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+ A++ A G+ ++ETSA VE AF T++ EI
Sbjct: 126 ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L + ++ F + TI ++ K +VI + I DTAGQE Y A
Sbjct: 8 VVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAV 119
+ Y R G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTV 125
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+ A++ A G+ ++ETSA VE AF T++ EI
Sbjct: 126 ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L + ++ F + TI ++ K +VI + I DTAGQE Y A
Sbjct: 8 VVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAV 119
+ Y R G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG-RTV 125
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+ A++ A G+ ++ETSA VE AF T++ EI
Sbjct: 126 ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L + ++ F + TI ++ K +VI + I DTAGQE Y A
Sbjct: 8 VVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAV 119
+ Y R G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V
Sbjct: 67 MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTV 125
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
+ A++ A G+ ++ETSA VE AF T++ EI
Sbjct: 126 ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R EF AT+GVE + +K +WDTAG E++
Sbjct: 15 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGG 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 75 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 131
Query: 121 TEDAKEFAEKEGLCFMETSALESTNVELAFL 151
+ F K+ L + + SA + N E FL
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 162
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ + R E AT+GVE + +K +WDTAGQE++
Sbjct: 20 LVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG 79
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
+ YY A A++++D+T R ++ NV W +L +NI I+L GNK D++ +
Sbjct: 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDRKV-- 136
Query: 121 TEDAKE--FAEKEGLCFMETSALESTNVELAFL 151
AK F K+ L + + SA + N E FL
Sbjct: 137 --KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL 167
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF ++ + E+++ D + + M LVGNK DL T R V T+ A E
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHEL 151
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164
A+ G+ F+ETSA VE AF T++ EI + KK
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK 188
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ + E+++ D +++ ++LVGNKSDL + R V T+ A++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ F+ETSA V+ AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ + E+++ D +++ ++LVGNKSDL + R V T+ A++
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDL 134
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ F+ETSA V+ AF T++ EI
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L +F + F D TI + TK + + I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 69 AVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF 127
G +LV+ I RQSF+ V + + LR + ++LVGNK+DLE+ R VP +A F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 128 AEKEGLCFMETSALESTNVELAF 150
+ + E SA NV+ AF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L +F + F D TI + TK VI + + I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKN-IIIMLVGNKSDLETLRAVPTEDAKEF 127
G +LV+ +T R SF+ + ++ ++ D++ ++L+GNK+DL+ R V E+ ++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSK 163
A + + +ME SA NV+ AF E+ R++ K
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF----HELVRVIRK 168
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNKSDL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNKSDL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV 61
+GD AVGK+ +L + + F D T+ F + +V+ V +WDTAGQE Y +
Sbjct: 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQEDYNRL 70
Query: 62 TSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
YRGA +L + + + S++NVA +W+ ELR H + I+LVG K DL
Sbjct: 71 RPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR------ 123
Query: 121 TEDAKEFAEKEGLCFMETSALE 142
+D + F + G + T+ E
Sbjct: 124 -DDKQFFIDHPGAVPITTNQGE 144
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ + E+++ D +++ ++LVGNK DL + R V T+ A++
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 151
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ F+ETSA V+ AF T++ EI
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 140
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 138
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ LL FA F T+ E L + K V IWDTAGQ+ Y
Sbjct: 39 LVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDDYDR 97
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET---- 115
+ +Y A +L +D+T SFDN+ RW E+ H K + I++VG K+DL
Sbjct: 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKDKSL 156
Query: 116 --------LRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
L V +E A G + ++E SA NV F
Sbjct: 157 VNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 1 LIGDSAVGKSQLLARFAR--DEFSLDSKATIGVEFQTKTLVIHHKNVKAQIW--DTAGQE 56
++G++ VGKS L++ F +F D T GVE + I V +++ DTAG +
Sbjct: 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84
Query: 57 RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL---RGHADKNIIIMLVGNKSDL 113
Y+ S Y+ G A+LV+D++ +SF++ W E L R ++ + +LV NK+DL
Sbjct: 85 LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL 144
Query: 114 ETLR-AVPTEDAKEFAEKEGLCFMETSA-LESTNVELAFLTVLTEIYR 159
R V + A+++A L F + SA + + FL++ T YR
Sbjct: 145 PPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F + F + TI ++ K + + + +I DTAG E++ A
Sbjct: 8 VLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y + G LVY IT + +F+++ E+ LR +++ ++LVGNK DLE R V
Sbjct: 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV 126
Query: 120 PTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYR 159
E + A + C F+E+SA NV F ++ +I R
Sbjct: 127 GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV 61
+GD AVGK+ LL + + F D T+ F + +V++ V +WDTAGQE Y +
Sbjct: 14 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRL 72
Query: 62 TSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120
YRGA +L + + + S++NV+ +W+ EL+ H + I+LVG K DL
Sbjct: 73 RPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLR------ 125
Query: 121 TEDAKEFAEKEG 132
+D + F + G
Sbjct: 126 -DDKQFFIDHPG 136
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + +I ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 139
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGN+ DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 2/157 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G +VGKS L +F +F + TI F TK + ++ + Q+ DTAGQ+ Y
Sbjct: 9 ILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSI 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADK-NIIIMLVGNKSDLETLRAV 119
Y G +LVY +T +SF+ + +L K I IMLVGNK DL R +
Sbjct: 68 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 127
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156
E+ K AE F+E+SA E+ F ++ E
Sbjct: 128 SYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
K+ L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + +I ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F + F TI ++ K + + + +I DTAG E++ A
Sbjct: 8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y + G LVY IT + +F+++ E+ LR ++ ++LVGNK DLE R V
Sbjct: 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVV 126
Query: 120 PTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYR 159
E + A + C F+E+SA NV F ++ +I R
Sbjct: 127 GKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F + F TI ++ K + + + +I DTAG E++ A
Sbjct: 8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTA 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y + G LVY IT + +F+++ E+ LR +++ ++LVGNK DLE R V
Sbjct: 67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV 126
Query: 120 PTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYR 159
E + A + C F+E+SA NV F ++ +I R
Sbjct: 127 GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G +VGKS L +F +F TI F TK + ++ + Q+ DTAGQ+ Y
Sbjct: 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSI 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADK-NIIIMLVGNKSDLETLRAV 119
Y G +LVY +T +SF+ + +L K I IMLVGNK DL R +
Sbjct: 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156
E+ K AE F+E+SA E+ F ++ E
Sbjct: 130 SYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DT GQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G +VGKS L +F +F TI F TK + ++ + Q+ DTAGQ+ Y
Sbjct: 6 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSI 64
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADK-NIIIMLVGNKSDLETLRAV 119
Y G +LVY +T +SF+ + +L K I IMLVGNK DL R +
Sbjct: 65 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 124
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160
E+ K AE F+E+SA E+ F ++ E +I
Sbjct: 125 SYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKI 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG+E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ E
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G VGKS L +F + F TI ++ K + + + +I DTAG E++ A
Sbjct: 10 VLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTA 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y + G LVY IT + +F+++ E+ LR ++ ++LVGNK DLE R V
Sbjct: 69 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVV 128
Query: 120 PTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYR 159
E + A + C F+E+SA NV F ++ +I R
Sbjct: 129 GKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 76/157 (48%), Gaps = 2/157 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G +VGKS L +F +F TI F TK + ++ + Q+ DTAGQ+ Y
Sbjct: 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSI 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADK-NIIIMLVGNKSDLETLRAV 119
Y G +LVY +T +SF+ + +L K I IMLVGNK DL R +
Sbjct: 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156
E+ K AE F+E+SA E+ F ++ E
Sbjct: 130 SYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV 61
+GD AVGK+ +L + + F D T+ F + +V+ V +WDTAGQE Y +
Sbjct: 12 VGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL 70
Query: 62 TSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ETL 116
YRGA +L + + + S++N+ +WL EL+ H I I+LVG K DL + L
Sbjct: 71 RPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDDKQFL 129
Query: 117 RAVPTEDAKEFAEKEGL-------CFMETSALESTNVELAFLTVL 154
+ P + A+ E L ++E S+ NV+ F T +
Sbjct: 130 KDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTA QE Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAG E Y A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+ G + VGKS L+ RF F + T+ ++ + I + V +I DTAGQE
Sbjct: 33 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSMEILDTAGQED-TI 90
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV---ARWLEELRGHADKNIIIMLVGNKSDLETLR 117
+ R G +LVYDIT R SF+ V L+E++ KN+ ++LVGNK+DL+ R
Sbjct: 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSR 148
Query: 118 AVPTEDAKEFAEKEGLCFMETSALEST-NVELAFLTVLTEIYR 159
V TE+ ++ A + F E SA N+ F + E+ R
Sbjct: 149 QVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 87/173 (50%), Gaps = 12/173 (6%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV 61
+GD AVGK+ +L + ++F D T+ F + + + + V +WDTAGQE Y +
Sbjct: 15 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRL 73
Query: 62 TSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL------- 113
YRGA +L + + + S++NV +W+ ELR A N+ I+LVG K DL
Sbjct: 74 RPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYL 132
Query: 114 -ETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKK 164
+ + + +E ++ G ++E S+ NV+ F T + + + +K
Sbjct: 133 ADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L + ++ F + TI ++ K +VI + I DTAGQE A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVPTEDAKEF 127
G + V+ I +SF+++ ++ E+++ D + + M LVGNK DL R V + A++
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDL 133
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
A G+ ++ETSA VE AF T++ EI
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD AVGK+ L+ + + + + T F + + + + V+ Q+ DTAGQ+ +
Sbjct: 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDK 83
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLE----- 114
+ Y +L + + SF NV+ +W+ E+R H K II LVG +SDL
Sbjct: 84 LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLREDVKV 142
Query: 115 -------TLRAVPTEDAKEFAEK-EGLCFMETSALESTNVELAF 150
+ VP E AK AE+ + ++E SAL N++ F
Sbjct: 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 14 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 73 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 131
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 132 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 183
Query: 167 TA 168
A
Sbjct: 184 QA 185
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 11 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 70 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 128
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 129 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 180
Query: 167 TA 168
A
Sbjct: 181 QA 182
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 12 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 71 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 129
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 130 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 181
Query: 167 TA 168
A
Sbjct: 182 QA 183
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 13 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 130
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 131 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 182
Query: 167 TA 168
A
Sbjct: 183 QA 184
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 12 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 71 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 129
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 130 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 181
Query: 167 TA 168
A
Sbjct: 182 QA 183
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 12 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 71 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 129
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 130 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 181
Query: 167 TA 168
A
Sbjct: 182 QA 183
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 10 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 127
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 128 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 179
Query: 167 TA 168
A
Sbjct: 180 QA 181
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 10 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y +++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 127
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 128 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y +++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 11 IVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 70 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 128
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 129 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 180
Query: 167 TA 168
A
Sbjct: 181 QA 182
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 12 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y +++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 71 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 129
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 130 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y +++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 3/126 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++DEF T+ E + + K V+ +WDTAGQE Y
Sbjct: 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 88
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y ++ + + S +N+ +W+ E++ H N+ I+LV NK DL + V
Sbjct: 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSDEHV 147
Query: 120 PTEDAK 125
TE A+
Sbjct: 148 RTELAR 153
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + FS + T+ + +V K V +WDTAGQE Y
Sbjct: 18 VVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 77 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 135
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 136 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQ-----IWDTAGQERYRAVTS 63
KS L +F + F D TI + + H + Q + DTAGQE + A+
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY------LKHTEIDNQWAILDVLDTAGQEEFSAMRE 79
Query: 64 AYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAVPTE 122
Y R G ++VY +T + SF++V R+ + LR ++ ++LV NK DL LR V +
Sbjct: 80 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 139
Query: 123 DAKEFAEKEGLCFMETSALEST-NVELAF 150
KE A K + ++ETSA + NV+ F
Sbjct: 140 QGKEMATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQEDYDR 88
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDL 141
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 13/149 (8%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQ-----IWDTAGQERYRAVTS 63
KS L +F + F D TI + + H + Q + DTAGQE + A+
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY------LKHTEIDNQWAILDVLDTAGQEEFSAMRE 84
Query: 64 AYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAVPTE 122
Y R G ++VY +T + SF++V R+ + LR ++ ++LV NK DL LR V +
Sbjct: 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
Query: 123 DAKEFAEKEGLCFMETSALEST-NVELAF 150
KE A K + ++ETSA + NV+ F
Sbjct: 145 QGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 10 IVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 69 ARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL F++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQEDYDR 88
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 141
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 27 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 85
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 86 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 144
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 145 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 49 IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLV 107
+ DTAGQE + A+ Y R G ++VY +T + SF++V R+ + LR ++ ++LV
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 108 GNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALEST-NVELAF 150
NK DL LR V + KE A K + ++ETSA + NV+ F
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 15 VVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 74 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 132
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 133 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 93
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 152
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 153 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 49 IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLV 107
+ DTAGQE + A+ Y R G ++VY +T + SF++V R+ + LR ++ ++LV
Sbjct: 70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129
Query: 108 GNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALEST-NVELAF 150
NK DL LR V + KE A K + ++ETSA + NV+ F
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNV-KAQIWDTAGQERYR 59
+ G VGKS L+ RF + F T VE + ++ K++ QI DT G ++
Sbjct: 8 VFGAGGVGKSSLVLRFVKGTFRESYIPT--VEDTYRQVISCDKSICTLQITDTTGSHQFP 65
Query: 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLE---ELRGHADKNIIIMLVGNKSDLETL 116
A+ +LVY IT RQS + + E E++G + +I IMLVGNK D
Sbjct: 66 AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE-SIPIMLVGNKCDESPS 124
Query: 117 RAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVL 154
R V + +A+ A FMETSA + NV+ F +L
Sbjct: 125 REVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS GK+ LL FA+D F + T+ E T + I + ++ +WDT+G Y
Sbjct: 33 VVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDN 91
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET---- 115
V Y + ++ +DI++ ++ D+V +W E++ N ++LVG KSDL T
Sbjct: 92 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVST 150
Query: 116 ------LRAVPT--EDAKEFAEKEGLC-FMETSALESTN 145
R P + A++ G ++E SAL+S N
Sbjct: 151 LVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS GK+ LL FA+D F + T+ E T + I + ++ +WDT+G Y
Sbjct: 28 VVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDN 86
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET---- 115
V Y + ++ +DI++ ++ D+V +W E++ N ++LVG KSDL T
Sbjct: 87 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVST 145
Query: 116 ------LRAVPT--EDAKEFAEKEGLC-FMETSALESTN 145
R P + A++ G ++E SAL+S N
Sbjct: 146 LVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 16/159 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GDS GK+ LL FA+D F + T+ E T + I + ++ +WDT+G Y
Sbjct: 12 VVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPYYDN 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET---- 115
V Y + ++ +DI++ ++ D+V +W E++ N ++LVG KSDL T
Sbjct: 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVST 129
Query: 116 ------LRAVPT--EDAKEFAEKEGLC-FMETSALESTN 145
R P + A++ G ++E SAL+S N
Sbjct: 130 LVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 10 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 127
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 128 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 179
Query: 167 TA 168
A
Sbjct: 180 QA 181
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 10 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 127
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 128 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 179
Query: 167 TA 168
A
Sbjct: 180 QA 181
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + S++NV A+W E+R H II LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 10 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKR-------------------QSFDNV-ARWLEELRGHADK 100
+ Y VG DIT R SF+NV A+W E+R H
Sbjct: 69 LRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHC-P 127
Query: 101 NIIIMLVGNKSDL----ETLRAVPTEDAKEFAEKEGLC---------FMETSALESTNVE 147
N I+LVG K DL +T+ + + +GL ++E SAL ++
Sbjct: 128 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 187
Query: 148 LAF 150
F
Sbjct: 188 TVF 190
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 8 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 67 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 125
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V E+ ++ A + G +ME SA V F
Sbjct: 126 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 10 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 127
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V E+ ++ A + G +ME SA V F
Sbjct: 128 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 14 VVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQEDYDR 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + S++NV A+W E+R H II LVG K DL +T
Sbjct: 73 LRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDT 131
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 132 IEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV A+W E+R H + I+LVG K DL
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDL 119
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL +A D F + T+ + ++ + K ++DTAGQE Y
Sbjct: 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 81
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF NV W+ EL+ +A N+ +L+G + DL +T
Sbjct: 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKT 140
Query: 116 L--------RAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
L + + E ++ A++ G C++E SAL ++ F
Sbjct: 141 LARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 8 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 67 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 125
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
R V E+ ++ A + G +ME SA V F
Sbjct: 126 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 67 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 125
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 126 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 15 VVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DSKPVNLGLWDTAGQEDYDR 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + S++NV A+W E+R H II LVG K DL +T
Sbjct: 74 LRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDDKDT 132
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 133 IEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 9 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H + I+LVG K DL +T
Sbjct: 68 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDDKDT 126
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 127 IERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAGQE Y
Sbjct: 9 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H + I+LVG K DL +T
Sbjct: 68 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRDDKDT 126
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 127 IERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + + T+ + +V K V +WDTAGQE Y
Sbjct: 35 VVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYDR 93
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 152
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 153 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 11 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 70 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 128
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 129 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 93
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF+NV A+W E+R H N I+LVG K DL +T
Sbjct: 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 152
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 153 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVK--AQIWDTAGQERY 58
++GD AVGK+ LL F++ E A + F+ + V+ +KN + +WDTAGQE Y
Sbjct: 28 VVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 59 RAVTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL--ET 115
+ Y + +L + + R SFDN++ +W E++ + D + LVG K DL +
Sbjct: 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDG 143
Query: 116 LRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
V ++ + +K G + ++E S++ + F
Sbjct: 144 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVK--AQIWDTAGQERY 58
++GD AVGK+ LL F++ E A + F+ + V+ +KN + +WDTAGQE Y
Sbjct: 27 VVGDGAVGKTCLLLAFSKGEIP---TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 83
Query: 59 RAVTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL--ET 115
+ Y + +L + + R SFDN++ +W E++ + D + LVG K DL +
Sbjct: 84 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDG 142
Query: 116 LRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAF 150
V ++ + +K G + ++E S++ + F
Sbjct: 143 SDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAGQE Y
Sbjct: 10 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL
Sbjct: 69 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDL 121
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 24/182 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++D+F T+ E + + K V+ +WDTAG E Y
Sbjct: 13 IVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLEDYDR 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + I S +N+ +W E++ H N+ I+LVGNK DL T
Sbjct: 72 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRNDEHT 130
Query: 116 LR--------AVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166
R V E+ ++ A + G +ME SA V E++ + ++ AL
Sbjct: 131 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR--------EVFEMATRAAL 182
Query: 167 TA 168
A
Sbjct: 183 QA 184
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68
KS L +F F TI +F K + + +I DTAG E++ ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 69 AVGAMLVYDITKRQSFDNVARWLEEL-RGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF 127
G +LVY + +QSF ++ +++ R + + ++LVGNK DLE+ R V + + +
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 128 AEKEGLCFMETSALESTNVELAFLTVLTEI 157
AE+ G FMETSA T V+ F ++ ++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Query: 9 KSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNV-KAQIWDTAGQERYRAVTSAYYR 67
KS L+ RF + F TI E + ++ K+V QI DT G ++ A+
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTI--EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 68 GAVGAMLVYDITKRQSFDNVA---RWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124
+LV+ +T +QS + + + + +++G + +I +MLVGNK D ET R V T +A
Sbjct: 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE-DIPVMLVGNKCD-ETQREVDTREA 136
Query: 125 KEFAEKEGLCFMETSALESTNVELAFLTVLT 155
+ A++ FMETSA + NV+ F +LT
Sbjct: 137 QAVAQEWKCAFMETSAKMNYNVKELFQELLT 167
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 218
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF +V A+W E+R H N I+LVG K DL +T
Sbjct: 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 277
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 278 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 218
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF +V A+W E+R H N I+LVG K DL +T
Sbjct: 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 277
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 278 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKA-TIGVEFQTKTLVIHHKN---VKAQIWDTAGQE 56
LIG+ VGKS L FA S+DS +G + +TL++ ++ + +W+ G+
Sbjct: 11 LIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70
Query: 57 RY-----RAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNK 110
+ V AY ++VY IT R SF+ + +LR ++I I+LVGNK
Sbjct: 71 EWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
SDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + + F + T+ + +V K V +WDTAG E Y
Sbjct: 160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYDR 218
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y ++ + + SF +V A+W E+R H N I+LVG K DL +T
Sbjct: 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDT 277
Query: 116 LRAVPTEDAKEFAEKEGLC---------FMETSALESTNVELAF 150
+ + + +GL ++E SAL ++ F
Sbjct: 278 IEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKA-TIGVEFQTKTLVIHHKN---VKAQIWDTAGQE 56
LIG+ VGKS L FA S+DS +G + +TL++ ++ + +W+ G+
Sbjct: 42 LIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN 101
Query: 57 RY-----RAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNK 110
+ V AY ++VY IT R SF+ + +LR ++I I+LVGNK
Sbjct: 102 EWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
SDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD GQ++ R
Sbjct: 327 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRP 381
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 382 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 437
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 438 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 483
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATI-GVEFQTKTLVIHHKN---VKAQIWDTAGQE 56
LIG+ VGKS L FA S+DS + G + +TL++ ++ + +W+ G+
Sbjct: 11 LIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70
Query: 57 RY-----RAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNK 110
+ V AY ++VY IT R SF+ + +LR ++I I+LVGNK
Sbjct: 71 EWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
SDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD VGK+ L + FA + D +G + +TL + ++ + DT E+
Sbjct: 9 LLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67
Query: 61 VTS--AYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNKSDLETLR 117
S + +G ++VY I R SF++ + +LR H ++ I+LVGNK+DL R
Sbjct: 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCR 127
Query: 118 AVPTEDAKEFAEKEGLCFMETSALESTNVELAF 150
V E+ + A F+ETSA NV F
Sbjct: 128 EVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATI-GVEFQTKTLVIHHKN---VKAQIWDTAGQE 56
LIG+ VGKS L FA S+DS + G + +TL++ ++ + +W+ G+
Sbjct: 11 LIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN 70
Query: 57 RY-----RAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNK 110
+ V AY ++VY IT R SF+ + +LR ++I I+LVGNK
Sbjct: 71 EWLHDHXMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
SDL R V + + A F+ETSA NV+ F ++ ++
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ +L A+D + T+ E T L + V+ +WDT+G Y
Sbjct: 16 LVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPYYDN 74
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDN-VARWLEELRGHADKNIIIMLVGNKSDLET 115
V Y + +L +DI++ ++ D+ + +W E+ + + ++L+G K+DL T
Sbjct: 75 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 129
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ +L A+D + T+ E T L + V+ +WDT+G Y
Sbjct: 15 LVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPYYDN 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDN-VARWLEELRGHADKNIIIMLVGNKSDLET 115
V Y + +L +DI++ ++ D+ + +W E+ + + ++L+G K+DL T
Sbjct: 74 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 128
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+GD GK+ +L A+D + T+ E T L + V+ +WDT+G Y
Sbjct: 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPYYDN 90
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDN-VARWLEELRGHADKNIIIMLVGNKSDLET 115
V Y + +L +DI++ ++ D+ + +W E+ + + ++L+G K+DL T
Sbjct: 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD GQ++ R
Sbjct: 17 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRP 71
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 72 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 127
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 128 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD GQ++ R
Sbjct: 18 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRP 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 73 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 128
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 129 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD GQ++ R
Sbjct: 5 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRP 59
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 115
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 116 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV 61
+G A GK+ +L + + S+ + T+G +T T +KNVK +WD GQ++ R +
Sbjct: 6 LGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPL 60
Query: 62 TSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAVP 120
YY G G + V D R D + L + ++ II++ NK DL
Sbjct: 61 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD----- 115
Query: 121 TEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 116 AXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 161
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD GQ++ R
Sbjct: 5 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRP 59
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 60 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 115
Query: 120 PTEDAKEFAEKEGL 133
E EK GL
Sbjct: 116 -AMKPHEIQEKLGL 128
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 18 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 77 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 129
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 9 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 67
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 68 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 120
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 10 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 69 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 121
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 11 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 70 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 122
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 15 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 74 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 126
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 12 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 71 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 123
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 10 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 68
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 69 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 121
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 11 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 70 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 122
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T+ I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ + A +FS D T+G + T NV +IWD GQ R+R+
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQPRFRS 82
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ Y RG + + D R+ + L L + I ++++GNK DL
Sbjct: 83 MWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN---- 138
Query: 120 PTEDAKEFAEKEGL--------CFMETSALESTNVELAF 150
D K+ EK L C S E N+++
Sbjct: 139 -ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITL 176
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAGQE Y
Sbjct: 15 VVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 74 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 126
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD G ++ R
Sbjct: 18 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLDKIRP 72
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 73 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 128
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 129 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 174
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD G ++ R
Sbjct: 8 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLDKIRP 62
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 63 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 118
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 119 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 164
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + + S+ + T+G +T T +KNVK +WD G ++ R
Sbjct: 7 MLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGLDKIRP 61
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY G G + V D R D + L + + ++ II++ NK DL
Sbjct: 62 LWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD---- 117
Query: 120 PTEDAKEFAEKEGLC-------FMETSALESTNVELAFLTVLTEIYR 159
E EK GL +++ S S + LT LT Y+
Sbjct: 118 -AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 163
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ+R R
Sbjct: 22 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQDRIRP 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE-LRGHADKNIIIMLVGNKSDLETLRAV 119
+ Y++ G + V D R+ VA L++ L ++ +++L NK DL A+
Sbjct: 77 LWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAI 136
Query: 120 PTEDAKEFAEKEGL 133
E +K GL
Sbjct: 137 -----SEMTDKLGL 145
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + + DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 7/137 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD A GK+ LL ++ +F T+ E + + + V+ +WDTAGQE Y
Sbjct: 15 IVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQEDYDR 73
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL----ET 115
+ Y + ++ + I S +NV +W+ E+ H + + I+LVG K DL +T
Sbjct: 74 LRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRNDPQT 132
Query: 116 LRAVPTEDAKEFAEKEG 132
+ + E + +EG
Sbjct: 133 IEQLRQEGQQPVTSQEG 149
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + + + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++ + T+ + T++I + ++DTAGQE Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAG E Y
Sbjct: 8 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDR 66
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 119
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD AVGK+ LL + ++F + T+ + T++I + ++DTAG E Y
Sbjct: 12 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLEDYDR 70
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDL 113
+ Y ++ + + SF+NV +W+ E+ H K +LVG + DL
Sbjct: 71 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDL 123
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ + A +F+ D T+G + I NV ++WD GQ R+R+
Sbjct: 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRS 82
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ Y RG + + D ++ + L L + I ++++GNK DL
Sbjct: 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---- 138
Query: 120 PTEDAKEFAEKEGL--------CFMETSALESTNVELAF 150
D KE EK L C S E N+++
Sbjct: 139 -ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L + E + + TIG +T + +KN+ +WD GQ+R R+
Sbjct: 22 MVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDRIRS 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YYR G + V D R ++ + + +N + ++ NK DL +
Sbjct: 77 LWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMS- 135
Query: 120 PTEDAKEFAEKEGL 133
A E EK GL
Sbjct: 136 ----AAEITEKLGL 145
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ + A +F+ D T+G + I NV ++WD GQ R+R+
Sbjct: 36 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK----ITKGNVTIKLWDIGGQPRFRS 91
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ Y RG + + D ++ + L L + I ++++GNK DL
Sbjct: 92 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---- 147
Query: 120 PTEDAKEFAEKEGL--------CFMETSALESTNVELAF 150
D KE EK L C S E N+++
Sbjct: 148 -ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 185
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L + E + + TIG +T + +KN+ +WD GQ+R R+
Sbjct: 5 MVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDRIRS 59
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YYR G + V D R ++ + + +N ++ NK DL +
Sbjct: 60 LWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMS- 118
Query: 120 PTEDAKEFAEKEGL 133
A E EK GL
Sbjct: 119 ----AAEITEKLGL 128
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G VGKS L F E +++A G + +++V+ + ++D Q+ R
Sbjct: 12 LLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQDGGRW 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNKSDLETLRAV 119
+ ++VY +T + SF+ + +LR ++ I+LVGNKSDL R V
Sbjct: 70 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 129
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
++ + A F+ETSA NV+ F V+ +I
Sbjct: 130 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G VGKS L F E +++A G + +++V+ + ++D Q+ R
Sbjct: 7 LLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQDGGRW 64
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNKSDLETLRAV 119
+ ++VY +T + SF+ + +LR ++ I+LVGNKSDL R V
Sbjct: 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 124
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
++ + A F+ETSA NV+ F V+ +I
Sbjct: 125 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L + E + + TIG +T + +KN+ +WD GQ+R R+
Sbjct: 22 MVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVET----VQYKNISFTVWDVGGQDRIRS 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YYR G + V D R ++ + + +N ++ NK DL
Sbjct: 77 LWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLP----- 131
Query: 120 PTEDAKEFAEKEGL 133
A E EK GL
Sbjct: 132 EAMSAAEITEKLGL 145
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G VGKS L F E +++A G + +++V+ + ++D Q+ R
Sbjct: 12 LLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQDGGRW 69
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLVGNKSDLETLRAV 119
+ ++VY +T + SF+ + +LR ++ I+LVGNKSDL R V
Sbjct: 70 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREV 129
Query: 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
++ + A F+ETSA NV+ F V+ +I
Sbjct: 130 SVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +N+ +WD GQ++ R
Sbjct: 22 MVGLDAAGKTTILYKVKLGEV-VTTIPTIGFNVET----VEFRNISFTVWDVGGQDKIRP 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDL 113
+ YY G + V D R+ D+ L + + K+ II++ NK DL
Sbjct: 77 LWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 1 LIGDSAVGKSQLLARFA--------RDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIW- 50
L+G+S VGKS L F E D+ + I V+ + TLV++ IW
Sbjct: 28 LVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVY------DIWE 81
Query: 51 --DTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIMLV 107
D G R + + ++V+ +T R+SF V L LR G ++ ++LV
Sbjct: 82 QGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136
Query: 108 GNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
GNKSDL R V E+ + A +ETSA N F + +I
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 22 MVGLDAAGKTSILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETL 116
+ YY+ + V D R D + EEL + +N I+++ NK DL
Sbjct: 77 LWRHYYQNTQAIIFVVDSNDR---DRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 117 RAVPTEDAKEFAEKEGL 133
++ E EK GL
Sbjct: 134 MSI-----SEVTEKLGL 145
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 1 LIGDSAVGKSQLLARFA--------RDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIW- 50
L+G+S VGKS L F E S D+ + I V+ + TL+++ IW
Sbjct: 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVY------DIWE 60
Query: 51 --DTAG--QERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIM 105
D G Q+ A+ ++V+ +T R+SF V L LR G ++ ++
Sbjct: 61 QGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113
Query: 106 LVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
LVGNKSDL R V E+ + A +ETSA N F + +I
Sbjct: 114 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 76/172 (44%), Gaps = 28/172 (16%)
Query: 1 LIGDSAVGKSQLLARFA--------RDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIW- 50
L+G+S VGKS L F E S D+ + I V+ + TL+++ IW
Sbjct: 17 LLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVY------DIWE 70
Query: 51 --DTAG--QERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR-GHADKNIIIM 105
D G Q+ A+ ++V+ +T R+SF V L LR G ++ ++
Sbjct: 71 QGDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 123
Query: 106 LVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157
LVGNKSDL R V E+ + A +ETSA N F + +I
Sbjct: 124 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 34 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNICFTVWDVGGQDKIRP 88
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ Y++ G + V D R+ A L+++ + ++ ++++ NK D+ A+
Sbjct: 89 LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN--AM 146
Query: 120 PTEDAKEFAEKEGL 133
P E +K GL
Sbjct: 147 P---VSELTDKLGL 157
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 170 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 224
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL-RGHAD---KNIIIMLVGNKSDLETL 116
+ Y++ G + V D R+ N AR EEL R A+ ++ ++++ NK DL
Sbjct: 225 LWRHYFQNTQGLIFVVDSNDRERV-NEAR--EELMRMLAEDELRDAVLLVFANKQDLPN- 280
Query: 117 RAVPTEDAKEFAEKEGL 133
+A E +K GL
Sbjct: 281 ----AMNAAEITDKLGL 293
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 5 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 59
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL-RGHAD---KNIIIMLVGNKSDLETL 116
+ Y++ G + V D R+ N AR EEL R A+ ++ ++++ NK DL
Sbjct: 60 LWRHYFQNTQGLIFVVDSNDRERV-NEAR--EELMRMLAEDELRDAVLLVFANKQDLPN- 115
Query: 117 RAVPTEDAKEFAEKEGL 133
+A E +K GL
Sbjct: 116 ----AMNAAEITDKLGL 128
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 25 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 79
Query: 61 VTSAYYRGAVGAMLVYDITKR----QSFDNVARWL--EELRGHADKNIIIMLVGNKSDLE 114
+ Y++ G + V D R ++ D + R L +ELR + ++++ NK DL
Sbjct: 80 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR-----DAVLLVFANKQDLP 134
Query: 115 TLRAVPTEDAKEFAEKEGL 133
+A E +K GL
Sbjct: 135 N-----AMNAAEITDKLGL 148
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 22 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL-RGHAD---KNIIIMLVGNKSDLETL 116
+ Y++ G + V D R+ N AR EEL R A+ ++ ++++ NK DL
Sbjct: 77 LWRHYFQNTQGLIFVVDSNDRERV-NEAR--EELMRMLAEDELRDAVLLVFANKQDLPN- 132
Query: 117 RAVPTEDAKEFAEKEGL 133
+A E +K GL
Sbjct: 133 ----AMNAAEITDKLGL 145
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD GQ++ R
Sbjct: 21 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRP 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL-RGHAD---KNIIIMLVGNKSDLETL 116
+ Y++ G + V D R+ N AR EEL R A+ ++ ++++ NK DL
Sbjct: 76 LWRHYFQNTQGLIFVVDSNDRERV-NEAR--EELMRMLAEDELRDAVLLVFANKQDLPN- 131
Query: 117 RAVPTEDAKEFAEKEGL 133
+A E +K GL
Sbjct: 132 ----AMNAAEITDKLGL 144
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F ++ S T+G F KTL H+ K IWD GQ+ R+
Sbjct: 21 MLGLDNAGKTTILKKFNGEDIDTIS-PTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRS 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
Y+ G + V D RQ + R L+ L +++ NK DL A+
Sbjct: 76 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG--AL 133
Query: 120 PTEDAKEFAEKEGL-----CFMETSALESTNV 146
+ +E E + + C SA+ N+
Sbjct: 134 SSNAIREVLELDSIRSHHWCIQGCSAVTGENL 165
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 17/137 (12%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G A GK+ +L + E + + TIG +T + +KN+ +WD G ++ R
Sbjct: 7 MVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGLDKIRP 61
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL-RGHAD---KNIIIMLVGNKSDLETL 116
+ Y++ G + V D R+ N AR EEL R A+ ++ ++++ NK DL
Sbjct: 62 LWRHYFQNTQGLIFVVDSNDRERV-NEAR--EELMRMLAEDELRDAVLLVFANKQDLPN- 117
Query: 117 RAVPTEDAKEFAEKEGL 133
+A E +K GL
Sbjct: 118 ----AMNAAEITDKLGL 130
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F ++ S T+G F KTL H+ K IWD GQ+ R+
Sbjct: 23 MLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRS 77
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL 94
Y+ G + V D RQ + R L+ L
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F ++ S T+G F KTL H+ K IWD GQ+ R+
Sbjct: 23 MLGLDNAGKTTILKKFNGEDVDTIS-PTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRS 77
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEEL 94
Y+ G + V D RQ + R L+ L
Sbjct: 78 YWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 6/163 (3%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GKS L +F F + + + ++ + H+ V ++ DTA + R
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRN 84
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHA---DKNIIIMLVGNKSDLETLR 117
Y A ++VY + RQSFD+ + +LE L HA ++I +L+GNK D+ R
Sbjct: 85 CER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR 143
Query: 118 AVPTEDAKEFAEKEGLCFMETSA-LESTNVELAFLTVLTEIYR 159
V + A + G F E SA L+ +V+ F + E R
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 1 LIGDSAVGKSQLLARFARDEFS--LDSKATIGVEFQTKTLVIHHK---NVKAQIWDTAGQ 55
++G++ GK+ LL + + + S AT+G++ + + I K ++ +WD AG+
Sbjct: 5 IVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 64
Query: 56 ERYRAVTSAYYRGAVGAMLVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNK---S 111
E + + + + VYD++K Q+ D WL ++ A + +I LVG S
Sbjct: 65 EEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDVS 123
Query: 112 DLETLRAVPTEDAKEFAEKEGL 133
D + +A ++ KE K G
Sbjct: 124 DEKQRKACXSKITKELLNKRGF 145
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 1 LIGDSAVGKSQLLARFARDEFSL--DSKATIGVEFQTKTLVIHHK---NVKAQIWDTAGQ 55
++G++ GK+ LL + + + S AT+G++ + + I K ++ +WD AG+
Sbjct: 7 IVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGR 66
Query: 56 ERYRAVTSAYYRGAVGAMLVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNK---S 111
E + + + + VYD++K Q+ D WL ++ A + +I LVG S
Sbjct: 67 EEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHLDVS 125
Query: 112 DLETLRAVPTEDAKEFAEKEGL 133
D + +A ++ KE K G
Sbjct: 126 DEKQRKACXSKITKELLNKRGF 147
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L R E + +K TIG +T + +KN+K +WD GQ R
Sbjct: 23 ILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET----LSYKNLKLNVWDLGGQTSIRP 77
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWL------EELRGHADKNIIIMLVGNKSD 112
YY + V D T + ++ L EEL+ A +++ NK D
Sbjct: 78 YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-----LLVFANKQD 130
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 8 GKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYR 67
GK+ +L +F ++ S T+G F KTL H+ K IWD GQ+ R+ Y+
Sbjct: 30 GKTTILKKFNGEDVDTIS-PTLG--FNIKTL--EHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 68 GAVGAMLVYDITKRQSFDNVARWLEEL 94
G + V D RQ + R L+ L
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSL 111
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 12/118 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L R E + + TIG +T T +KN+K Q+WD GQ R
Sbjct: 7 ILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGQTSIRP 61
Query: 61 VTSAYYRGAVGAMLVYDITKRQ----SFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114
YY + V D R S + LEE + I+++ NK D+E
Sbjct: 62 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQDME 116
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F+ +E + + TIG + +VI+ N + +WD GQE R+
Sbjct: 27 IVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVIN--NTRFLMWDIGGQESLRS 81
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY ++V D T R+ L ++ H D + +++ NK D++ V
Sbjct: 82 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 141
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F+ +E + + TIG + +VI+ N + +WD GQE R+
Sbjct: 26 IVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVIN--NTRFLMWDIGGQESLRS 80
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY ++V D T R+ L ++ H D + +++ NK D++ V
Sbjct: 81 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 140
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F +E + + TIG + + KN +WD GQE R+
Sbjct: 21 IVGLDNAGKTTILYQFLMNEV-VHTSPTIGSNVEEIVV----KNTHFLMWDIGGQESLRS 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLE 114
+ YY +LV D R+ L + H D + +++ NK D++
Sbjct: 76 SWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMK 130
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L + E + + TIG + + + N+ +WD GQ+R R+
Sbjct: 22 MVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFNVE----CVQYCNISFTVWDVGGQDRIRS 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADK-NIIIMLVGNKSDLETLRAV 119
+ YY G + V D R ++ + + N ++ NK DL +
Sbjct: 77 LWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMS- 135
Query: 120 PTEDAKEFAEKEGL 133
A E EK GL
Sbjct: 136 ----AAEITEKLGL 145
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F+ +E + + TIG + +VI+ N + +WD GQE R+
Sbjct: 21 IVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--NVEEIVIN--NTRFLMWDIGGQESLRS 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY ++V D T R+ L ++ H D + +++ NK D++ V
Sbjct: 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 135
Query: 120 P 120
Sbjct: 136 A 136
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L +F+ +E + + TIG + +VI+ N + +WD GQE R+
Sbjct: 21 IVGLDNAGKTTILYQFSMNEV-VHTSPTIGS--NVEEIVIN--NTRFLMWDIGGQESLRS 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAV 119
+ YY ++V D T R+ L ++ H D + +++ NK D++ V
Sbjct: 76 SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV 135
Query: 120 P 120
Sbjct: 136 A 136
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L R E + + TIG +T T +KN+K Q+WD G R
Sbjct: 9 ILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGLTSIRP 63
Query: 61 VTSAYYRGAVGAMLVYDITKRQ----SFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114
YY + V D R S + LEE + I+++ NK D+E
Sbjct: 64 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQDME 118
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ LL + A ++ S T F K+ + + K +WD GQ + R
Sbjct: 22 LLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKS--VQSQGFKLNVWDIGGQRKIRP 76
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV 119
+Y+ + V D R+ F+ + L EL + + +++ NK DL L A
Sbjct: 77 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--LTAA 134
Query: 120 PTEDAKEFAE 129
P A E AE
Sbjct: 135 P---ASEIAE 141
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ LL + A ++ S T F K+ + + K +WD GQ + R
Sbjct: 21 LLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKS--VQSQGFKLNVWDIGGQRKIRP 75
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV 119
+Y+ + V D R+ F+ + L EL + + +++ NK DL L A
Sbjct: 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--LTAA 133
Query: 120 PTEDAKEFAE 129
P A E AE
Sbjct: 134 P---ASEIAE 140
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ LL + A ++ S T F K+ + + K +WD GQ + R
Sbjct: 9 LLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKS--VQSQGFKLNVWDIGGQRKIRP 63
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV 119
+Y+ + V D R+ F+ + L EL + + +++ NK DL L A
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--LTAA 121
Query: 120 PTEDAKEFAE 129
P A E AE
Sbjct: 122 P---ASEIAE 128
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 49 IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD---KNIIIM 105
++D +GQ RYR + YY+ + V D + R L+ L H D + I I+
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL 130
Query: 106 LVGNKSDL 113
NK DL
Sbjct: 131 FFANKMDL 138
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++G GK+ +L R E + + TIG +T T +KN+K Q+WD G R
Sbjct: 12 ILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVETVT----YKNLKFQVWDLGGLTSIRP 66
Query: 61 VTSAYYRGAVGAMLVYDITKR 81
YY + V D R
Sbjct: 67 YWRCYYSNTDAVIYVVDSCDR 87
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKA------------Q 48
LIGD GK+ LL + + F T G+ TK N+K
Sbjct: 46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTK----QAPNIKGLENDDELKECLFH 101
Query: 49 IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVG 108
WD GQE A + + ML+ D ++ N WL + + K+ +I +V
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKSPVI-VVM 157
Query: 109 NKSD 112
NK D
Sbjct: 158 NKID 161
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 13/174 (7%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD+ GKS L+ RF + + K E K +++ + I + AG A
Sbjct: 12 VLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-----A 64
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARW---LEELRGHADKNIIIMLVGNKSDL--ET 115
+ + A + V+ + SF V+R L LRG + + LVG + + +
Sbjct: 65 PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 124
Query: 116 LRAVPTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYRIVSKKALTA 168
R V A+ C + ET A NV+ F V ++ + ++ L A
Sbjct: 125 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
L+G GK+ LL + A ++ S T F K+ + + K +WD G + R
Sbjct: 9 LLGLDNAGKTTLLKQLASEDIS---HITPTQGFNIKS--VQSQGFKLNVWDIGGLRKIRP 63
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV 119
+Y+ + V D R+ F+ + L EL + + +++ NK DL L A
Sbjct: 64 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL--LTAA 121
Query: 120 PTEDAKEFAE 129
P A E AE
Sbjct: 122 P---ASEIAE 128
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 13/174 (7%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
++GD+ GKS L+ RF + + K E K +++ + I + AG A
Sbjct: 12 VLGDARSGKSSLIHRFLTGSYQVLEKTE--SEQYKKEMLVDGQTHLVLIREEAG-----A 64
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARW---LEELRGHADKNIIIMLVGNKSDL--ET 115
+ + A + V+ + SF V+R L LRG + + LVG + + +
Sbjct: 65 PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 124
Query: 116 LRAVPTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYRIVSKKALTA 168
R V A+ C + ET A NV+ F V ++ + ++ L A
Sbjct: 125 PRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 40 IHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD 99
+ +KN+ ++WD GQ R Y+ + V D T R VA+ EL D
Sbjct: 61 LQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRM-GVAK--HELYALLD 117
Query: 100 KN----IIIMLVGNKSDL 113
++ ++++ NK DL
Sbjct: 118 EDELRKSLLLIFANKQDL 135
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 71 GAMLVYDITK--RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEF 127
G +L D+++ ++FD+ +++ L A I++V K D R + DA F
Sbjct: 165 GFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTF 222
Query: 128 A-EKEGLCFMETSALESTNVELAFLTVLTEI 157
A K+ L +ETSA + NV+LAF T++ I
Sbjct: 223 ALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G GK+ LL D AT+ + + + N+K +D G + R
Sbjct: 6 FLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 60
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSD 112
+ Y+ G + + D + FD L+ L A+ K++ +++GNK D
Sbjct: 61 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60
+G GK+ LL D AT+ + + + N+K +D G + R
Sbjct: 28 FLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 82
Query: 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSD 112
+ Y+ G + + D + FD L+ L A+ K++ +++GNK D
Sbjct: 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKID 135
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 114 ETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKA 165
E A+PT D E LC + ++ N LAFL L+ + R+ ++ A
Sbjct: 161 EIFNALPTYDTL----LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSA 208
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 114 ETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKA 165
E A+PT D E LC + ++ N LAFL L+ + R+ ++ A
Sbjct: 162 EIFNALPTYDTL----LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSA 209
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 114 ETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKA 165
E A+PT D E LC + ++ N LAFL L+ + R+ ++ A
Sbjct: 162 EIFNALPTYDTL----LEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSA 209
>pdb|3QFK|A Chain A, 2.05 Angstrom Crystal Structure Of Putative
5'-Nucleotidase From Staphylococcus Aureus In Complex
With Alpha-Ketoglutarate
Length = 527
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 78 ITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFME 137
+T +F+ + ++L E + HAD ++ G + DLE+ PTE E EG +E
Sbjct: 179 LTFHSAFEILQQYLPEXKRHADIIVVCYHGGFEKDLES--GTPTEVLT--GENEGYAXLE 234
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 6 AVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAY 65
A+G S A AR+ + LD++A E +T A + D G R +TSA
Sbjct: 16 AIGSSYAFAYLAREAYGLDTEAVALGEPNEET---------AFVLDYFGVAAPRVITSAK 66
Query: 66 YRGAVGAMLVYDITKRQSFDNVAR 89
GA +L +QS ++A
Sbjct: 67 AEGAEQVILTDHNEFQQSVADIAE 90
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 6 AVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAY 65
A+G S A AR+ + LD++A E +T A + D G R +TSA
Sbjct: 15 AIGSSYAFAYLAREAYGLDTEAVALGEPNEET---------AFVLDYFGVAAPRVITSAK 65
Query: 66 YRGAVGAMLVYDITKRQSFDNVAR 89
GA +L +QS ++A
Sbjct: 66 AEGAEQVILTDHNEFQQSVADIAE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,067,993
Number of Sequences: 62578
Number of extensions: 171458
Number of successful extensions: 1023
Number of sequences better than 100.0: 355
Number of HSP's better than 100.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 361
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)