Query 040835
Match_columns 206
No_of_seqs 159 out of 1757
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040835.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040835hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-41 4.3E-46 235.1 19.5 164 1-164 14-178 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.5E-40 3.2E-45 230.0 16.7 166 1-166 10-175 (200)
3 KOG0098 GTPase Rab2, small G p 100.0 4.6E-40 9.9E-45 225.9 18.8 203 1-203 11-216 (216)
4 KOG0078 GTP-binding protein SE 100.0 1.9E-39 4.1E-44 228.4 20.6 166 1-166 17-182 (207)
5 KOG0087 GTPase Rab11/YPT3, sma 100.0 6.3E-39 1.4E-43 224.9 19.0 172 1-172 19-190 (222)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 8.3E-39 1.8E-43 221.4 17.4 161 1-161 27-188 (221)
7 cd04120 Rab12 Rab12 subfamily. 100.0 4.3E-37 9.3E-42 224.0 23.9 160 1-160 5-165 (202)
8 KOG0079 GTP-binding protein H- 100.0 1.9E-37 4.2E-42 205.3 16.9 160 1-161 13-172 (198)
9 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.9E-36 6.2E-41 220.7 22.8 166 1-166 5-176 (201)
10 PLN03110 Rab GTPase; Provision 100.0 8.5E-36 1.8E-40 220.2 24.4 165 1-165 17-181 (216)
11 KOG0080 GTPase Rab18, small G 100.0 3.5E-36 7.5E-41 202.0 16.4 160 1-160 16-176 (209)
12 KOG0091 GTPase Rab39, small G 100.0 2.9E-36 6.3E-41 202.9 15.2 179 1-179 13-194 (213)
13 cd04121 Rab40 Rab40 subfamily. 100.0 3.5E-35 7.5E-40 212.1 21.9 159 1-160 11-169 (189)
14 cd04111 Rab39 Rab39 subfamily. 100.0 1.1E-34 2.3E-39 213.5 24.0 203 1-204 7-211 (211)
15 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.8E-35 2.1E-39 215.0 22.9 186 1-188 18-218 (232)
16 cd04144 Ras2 Ras2 subfamily. 100.0 6.8E-35 1.5E-39 211.6 21.1 162 1-163 4-168 (190)
17 KOG0086 GTPase Rab4, small G p 100.0 2.5E-35 5.4E-40 196.4 16.5 169 1-169 14-182 (214)
18 cd04110 Rab35 Rab35 subfamily. 100.0 2.8E-34 6.1E-39 209.7 23.4 163 1-164 11-173 (199)
19 cd04109 Rab28 Rab28 subfamily. 100.0 1.4E-34 3E-39 213.8 21.9 160 1-160 5-168 (215)
20 KOG0093 GTPase Rab3, small G p 100.0 1.8E-35 3.9E-40 195.7 15.1 165 1-165 26-190 (193)
21 cd04122 Rab14 Rab14 subfamily. 100.0 4E-34 8.6E-39 203.4 21.2 159 1-159 7-165 (166)
22 cd04112 Rab26 Rab26 subfamily. 100.0 7.9E-34 1.7E-38 206.2 22.4 160 1-160 5-165 (191)
23 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.6E-34 1.4E-38 209.6 22.1 184 1-186 6-204 (222)
24 cd04125 RabA_like RabA-like su 100.0 1.3E-33 2.9E-38 204.6 22.9 161 1-161 5-165 (188)
25 PTZ00369 Ras-like protein; Pro 100.0 5E-34 1.1E-38 206.9 20.5 159 1-160 10-169 (189)
26 cd04126 Rab20 Rab20 subfamily. 100.0 8.7E-34 1.9E-38 208.8 21.8 161 1-166 5-198 (220)
27 PLN03108 Rab family protein; P 100.0 2.7E-33 5.9E-38 206.0 24.5 164 1-164 11-174 (210)
28 KOG0095 GTPase Rab30, small G 100.0 5.7E-35 1.2E-39 194.0 13.4 168 1-168 12-179 (213)
29 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 7.5E-34 1.6E-38 204.1 19.4 156 1-158 10-180 (182)
30 KOG0394 Ras-related GTPase [Ge 100.0 1.4E-34 3.1E-39 198.5 14.3 163 1-163 14-183 (210)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.7E-33 3.7E-38 201.1 20.3 159 1-160 7-166 (172)
32 cd04133 Rop_like Rop subfamily 100.0 9.7E-34 2.1E-38 202.4 18.9 156 1-158 6-173 (176)
33 cd01867 Rab8_Rab10_Rab13_like 100.0 2.8E-33 6.1E-38 199.2 21.1 159 1-159 8-166 (167)
34 cd01865 Rab3 Rab3 subfamily. 100.0 3.5E-33 7.6E-38 198.3 21.2 159 1-159 6-164 (165)
35 KOG0088 GTPase Rab21, small G 100.0 1.1E-34 2.4E-39 194.4 12.2 167 1-167 18-184 (218)
36 cd04117 Rab15 Rab15 subfamily. 100.0 3.7E-33 8E-38 197.4 20.4 156 1-156 5-160 (161)
37 cd04131 Rnd Rnd subfamily. Th 100.0 2.7E-33 5.9E-38 200.8 19.2 156 1-158 6-176 (178)
38 cd04119 RJL RJL (RabJ-Like) su 100.0 5.5E-33 1.2E-37 197.5 20.6 158 1-158 5-167 (168)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.6E-33 1.9E-37 196.4 21.2 158 1-158 7-164 (166)
40 PF00071 Ras: Ras family; Int 100.0 6.1E-33 1.3E-37 196.4 20.2 158 1-158 4-161 (162)
41 cd01875 RhoG RhoG subfamily. 100.0 7.8E-33 1.7E-37 200.8 20.1 157 1-159 8-178 (191)
42 smart00176 RAN Ran (Ras-relate 100.0 1.5E-32 3.3E-37 199.8 21.4 156 2-160 1-156 (200)
43 KOG0097 GTPase Rab14, small G 100.0 1E-32 2.2E-37 181.9 17.7 188 1-188 16-204 (215)
44 cd04127 Rab27A Rab27a subfamil 100.0 1.9E-32 4.2E-37 197.1 20.9 160 1-160 9-179 (180)
45 cd01866 Rab2 Rab2 subfamily. 100.0 2.7E-32 5.9E-37 194.3 21.4 159 1-159 9-167 (168)
46 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.6E-32 3.5E-37 197.5 20.1 159 1-160 5-168 (182)
47 cd01868 Rab11_like Rab11-like. 100.0 2.5E-32 5.4E-37 193.9 20.7 157 1-157 8-164 (165)
48 cd04132 Rho4_like Rho4-like su 100.0 3.3E-32 7.2E-37 197.0 20.9 162 1-164 5-173 (187)
49 cd04118 Rab24 Rab24 subfamily. 100.0 9.5E-32 2.1E-36 195.6 22.8 160 1-161 5-169 (193)
50 cd04136 Rap_like Rap-like subf 100.0 2.4E-32 5.3E-37 193.4 18.7 156 1-157 6-162 (163)
51 cd04113 Rab4 Rab4 subfamily. 100.0 5.3E-32 1.1E-36 191.4 20.1 156 1-156 5-160 (161)
52 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.1E-32 8.8E-37 194.4 19.0 155 1-157 6-174 (175)
53 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-31 2.5E-36 191.2 21.3 159 1-159 5-166 (170)
54 PLN03071 GTP-binding nuclear p 100.0 4.9E-32 1.1E-36 200.4 19.7 157 1-160 18-174 (219)
55 cd04106 Rab23_lke Rab23-like s 100.0 7.3E-32 1.6E-36 190.8 19.8 155 1-156 5-161 (162)
56 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-31 2.4E-36 190.5 20.4 156 1-156 8-164 (165)
57 smart00175 RAB Rab subfamily o 100.0 1.6E-31 3.4E-36 189.4 21.0 159 1-159 5-163 (164)
58 cd04175 Rap1 Rap1 subgroup. T 100.0 1E-31 2.2E-36 190.6 19.2 156 1-157 6-162 (164)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-31 2.9E-36 189.7 19.2 156 1-157 6-162 (163)
60 KOG0081 GTPase Rab27, small G 100.0 9.6E-33 2.1E-37 185.2 12.2 164 1-164 14-187 (219)
61 cd00877 Ran Ran (Ras-related n 100.0 2.1E-31 4.5E-36 189.3 19.9 156 1-159 5-160 (166)
62 cd04124 RabL2 RabL2 subfamily. 100.0 2.8E-31 6E-36 187.8 20.1 156 1-160 5-160 (161)
63 cd04140 ARHI_like ARHI subfami 100.0 2E-31 4.4E-36 189.3 19.3 155 1-156 6-163 (165)
64 cd01860 Rab5_related Rab5-rela 100.0 5.3E-31 1.1E-35 186.6 21.1 157 1-157 6-162 (163)
65 cd04134 Rho3 Rho3 subfamily. 100.0 2E-31 4.3E-36 193.2 18.5 157 1-159 5-175 (189)
66 cd01861 Rab6 Rab6 subfamily. 100.0 5.7E-31 1.2E-35 186.1 20.4 156 1-156 5-160 (161)
67 cd04116 Rab9 Rab9 subfamily. 100.0 5.4E-31 1.2E-35 187.9 20.2 155 1-156 10-169 (170)
68 smart00173 RAS Ras subfamily o 100.0 4.7E-31 1E-35 187.1 19.7 157 1-158 5-162 (164)
69 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.9E-31 1.3E-35 187.8 20.2 157 1-157 7-168 (170)
70 cd01871 Rac1_like Rac1-like su 100.0 3.7E-31 8E-36 189.3 19.0 154 1-156 6-173 (174)
71 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.1E-33 4.6E-38 183.2 6.7 160 1-160 2-162 (192)
72 cd04142 RRP22 RRP22 subfamily. 100.0 3.9E-31 8.4E-36 192.6 18.9 160 1-160 5-176 (198)
73 smart00174 RHO Rho (Ras homolo 100.0 3.8E-31 8.3E-36 189.3 18.6 157 1-159 3-173 (174)
74 PLN03118 Rab family protein; P 100.0 2.4E-30 5.3E-35 190.7 23.0 159 1-160 19-179 (211)
75 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1E-30 2.2E-35 184.7 19.9 155 1-157 6-161 (162)
76 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1E-30 2.3E-35 185.2 19.9 156 1-157 7-163 (164)
77 cd04123 Rab21 Rab21 subfamily. 100.0 2.5E-30 5.4E-35 182.7 20.7 157 1-157 5-161 (162)
78 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.4E-30 5.1E-35 183.5 20.2 156 1-157 5-163 (164)
79 cd01862 Rab7 Rab7 subfamily. 100.0 5.6E-30 1.2E-34 182.8 21.1 160 1-160 5-169 (172)
80 cd01873 RhoBTB RhoBTB subfamil 100.0 2E-30 4.3E-35 188.3 18.2 153 1-156 7-194 (195)
81 cd04146 RERG_RasL11_like RERG/ 100.0 2.3E-30 5E-35 183.8 17.8 157 1-158 4-164 (165)
82 cd00154 Rab Rab family. Rab G 100.0 7.4E-30 1.6E-34 179.4 19.8 154 1-154 5-158 (159)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 7.2E-30 1.6E-34 181.8 19.8 157 1-158 6-164 (168)
84 cd01863 Rab18 Rab18 subfamily. 100.0 9E-30 1.9E-34 180.0 20.2 155 1-156 5-160 (161)
85 cd04143 Rhes_like Rhes_like su 100.0 6.3E-30 1.4E-34 191.7 20.2 156 1-157 5-170 (247)
86 cd04114 Rab30 Rab30 subfamily. 100.0 1.9E-29 4.1E-34 179.7 20.7 157 1-157 12-168 (169)
87 cd04148 RGK RGK subfamily. Th 100.0 1.2E-29 2.6E-34 187.9 20.0 163 1-165 5-170 (221)
88 cd04103 Centaurin_gamma Centau 100.0 8.2E-30 1.8E-34 179.5 18.0 149 1-156 5-157 (158)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.3E-29 2.9E-34 181.2 18.8 153 1-155 5-171 (173)
90 cd01892 Miro2 Miro2 subfamily. 100.0 9.5E-30 2.1E-34 181.3 17.3 156 1-158 9-166 (169)
91 cd04135 Tc10 TC10 subfamily. 100.0 2.7E-29 5.9E-34 179.7 18.5 155 1-157 5-173 (174)
92 cd00876 Ras Ras family. The R 100.0 6.5E-29 1.4E-33 175.1 19.4 156 1-157 4-160 (160)
93 cd04139 RalA_RalB RalA/RalB su 100.0 1.2E-28 2.7E-33 174.5 20.1 157 1-158 5-162 (164)
94 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.8E-30 1.3E-34 181.5 12.5 150 1-155 4-163 (164)
95 KOG0395 Ras-related GTPase [Ge 100.0 1E-28 2.2E-33 178.4 17.4 161 1-162 8-169 (196)
96 cd04137 RheB Rheb (Ras Homolog 100.0 5E-28 1.1E-32 174.1 20.0 159 1-160 6-165 (180)
97 cd01870 RhoA_like RhoA-like su 100.0 4.7E-28 1E-32 173.5 19.3 155 1-157 6-174 (175)
98 cd04147 Ras_dva Ras-dva subfam 100.0 5.3E-28 1.2E-32 176.5 19.7 157 1-158 4-163 (198)
99 cd04158 ARD1 ARD1 subfamily. 100.0 2.4E-28 5.2E-33 174.1 16.7 153 1-160 4-163 (169)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7.5E-28 1.6E-32 173.6 19.0 160 1-163 8-175 (183)
101 cd04149 Arf6 Arf6 subfamily. 100.0 2.5E-28 5.3E-33 173.8 16.2 148 1-155 14-167 (168)
102 PLN00223 ADP-ribosylation fact 100.0 3.7E-28 8E-33 174.8 17.0 152 1-159 22-179 (181)
103 cd04129 Rho2 Rho2 subfamily. 100.0 8.1E-28 1.8E-32 174.0 18.8 158 1-160 6-175 (187)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-27 2.4E-32 169.0 16.9 148 1-155 5-158 (159)
105 smart00177 ARF ARF-like small 100.0 2.3E-27 5.1E-32 169.9 17.7 150 1-157 18-173 (175)
106 cd01893 Miro1 Miro1 subfamily. 100.0 2.3E-27 5.1E-32 168.5 17.4 156 1-159 5-165 (166)
107 cd04102 RabL3 RabL3 (Rab-like3 100.0 6.1E-27 1.3E-31 170.3 19.5 144 1-144 5-176 (202)
108 PTZ00133 ADP-ribosylation fact 100.0 4.5E-27 9.7E-32 169.3 18.1 153 1-160 22-180 (182)
109 PTZ00132 GTP-binding nuclear p 100.0 1.3E-26 2.8E-31 171.3 20.8 156 1-159 14-169 (215)
110 KOG0393 Ras-related small GTPa 100.0 2E-28 4.4E-33 173.4 10.6 159 1-161 9-182 (198)
111 cd00157 Rho Rho (Ras homology) 100.0 6.2E-27 1.4E-31 166.9 18.4 153 1-155 5-170 (171)
112 cd04157 Arl6 Arl6 subfamily. 100.0 3.3E-27 7.1E-32 166.9 15.8 149 1-155 4-161 (162)
113 cd04154 Arl2 Arl2 subfamily. 100.0 4.6E-27 1E-31 168.1 16.7 148 1-155 19-172 (173)
114 PTZ00099 rab6; Provisional 100.0 2.4E-26 5.1E-31 164.3 19.5 141 19-159 3-143 (176)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.9E-27 4.2E-32 169.1 12.7 148 1-155 4-166 (167)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.9E-26 4.1E-31 165.1 16.2 148 1-155 20-173 (174)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.8E-26 3.8E-31 162.9 14.8 149 1-155 4-159 (160)
118 KOG4252 GTP-binding protein [S 99.9 2.6E-28 5.6E-33 167.1 5.0 162 1-163 25-186 (246)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.5E-26 7.6E-31 162.5 15.7 149 1-155 4-166 (167)
120 cd00879 Sar1 Sar1 subfamily. 99.9 5.2E-26 1.1E-30 165.0 16.6 149 1-156 24-189 (190)
121 cd04151 Arl1 Arl1 subfamily. 99.9 9.3E-26 2E-30 159.0 16.1 148 1-155 4-157 (158)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 5.6E-26 1.2E-30 160.1 14.2 148 1-155 4-157 (158)
123 PF00025 Arf: ADP-ribosylation 99.9 9E-26 2E-30 161.5 15.1 150 1-157 19-175 (175)
124 PLN00023 GTP-binding protein; 99.9 4.9E-25 1.1E-29 167.9 18.6 133 1-133 26-189 (334)
125 smart00178 SAR Sar1p-like memb 99.9 3.5E-25 7.5E-30 159.8 16.6 149 1-156 22-183 (184)
126 cd04159 Arl10_like Arl10-like 99.9 2.9E-25 6.2E-30 156.0 14.8 149 1-155 4-158 (159)
127 cd01890 LepA LepA subfamily. 99.9 1.1E-24 2.3E-29 156.6 15.8 151 1-157 5-176 (179)
128 PRK12299 obgE GTPase CgtA; Rev 99.9 2E-24 4.2E-29 168.0 17.4 159 1-160 163-330 (335)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.3E-24 2.9E-29 154.5 14.9 152 1-157 5-167 (168)
130 cd00882 Ras_like_GTPase Ras-li 99.9 1.2E-23 2.5E-28 146.3 18.8 153 1-154 1-156 (157)
131 cd01898 Obg Obg subfamily. Th 99.9 1.4E-24 3E-29 154.7 14.2 154 1-156 5-169 (170)
132 cd01879 FeoB Ferrous iron tran 99.9 1.1E-23 2.4E-28 148.1 17.2 147 1-156 1-155 (158)
133 KOG0073 GTP-binding ADP-ribosy 99.9 1.1E-23 2.4E-28 142.3 15.4 153 1-160 21-180 (185)
134 cd01878 HflX HflX subfamily. 99.9 5.4E-24 1.2E-28 156.1 14.5 149 1-156 46-203 (204)
135 cd04171 SelB SelB subfamily. 99.9 9.2E-24 2E-28 149.4 15.1 148 1-155 5-163 (164)
136 TIGR00231 small_GTP small GTP- 99.9 3.8E-23 8.3E-28 144.9 17.1 152 1-153 6-159 (161)
137 cd04155 Arl3 Arl3 subfamily. 99.9 1.7E-23 3.8E-28 149.5 15.4 145 1-155 19-172 (173)
138 COG1100 GTPase SAR1 and relate 99.9 1E-22 2.2E-27 150.9 19.2 164 1-164 10-191 (219)
139 cd01881 Obg_like The Obg-like 99.9 1.1E-23 2.5E-28 150.6 12.9 155 1-156 1-175 (176)
140 TIGR02528 EutP ethanolamine ut 99.9 8.4E-24 1.8E-28 146.4 11.7 131 1-154 5-141 (142)
141 KOG0070 GTP-binding ADP-ribosy 99.9 1.6E-23 3.4E-28 145.1 11.9 152 1-159 22-179 (181)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.1E-23 6.6E-28 147.4 13.5 153 1-157 5-165 (168)
143 KOG3883 Ras family small GTPas 99.9 1.3E-22 2.9E-27 135.7 14.4 168 1-169 14-186 (198)
144 TIGR02729 Obg_CgtA Obg family 99.9 1.3E-22 2.9E-27 157.7 16.7 155 1-157 162-328 (329)
145 KOG1673 Ras GTPases [General f 99.9 1.2E-23 2.5E-28 141.0 9.3 159 1-160 25-188 (205)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 4.3E-23 9.4E-28 150.2 12.6 145 1-149 7-173 (194)
147 cd01894 EngA1 EngA1 subfamily. 99.9 1.4E-22 3E-27 142.3 13.2 146 1-157 2-157 (157)
148 TIGR00436 era GTP-binding prot 99.9 1.6E-22 3.4E-27 154.2 14.2 149 1-157 5-163 (270)
149 KOG0075 GTP-binding ADP-ribosy 99.9 3.8E-23 8.3E-28 137.3 8.8 149 1-158 25-182 (186)
150 PRK04213 GTP-binding protein; 99.9 4.1E-23 8.8E-28 151.1 9.8 146 1-159 14-193 (201)
151 TIGR03156 GTP_HflX GTP-binding 99.9 4.2E-22 9.1E-27 156.2 16.0 148 1-156 194-350 (351)
152 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-22 2.9E-27 140.3 10.9 144 1-153 5-156 (156)
153 PRK12297 obgE GTPase CgtA; Rev 99.9 2.5E-21 5.3E-26 154.3 18.6 155 1-160 163-329 (424)
154 cd00881 GTP_translation_factor 99.9 1E-21 2.2E-26 142.1 14.6 153 1-157 4-186 (189)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.4E-21 2.9E-26 157.4 16.0 147 1-161 208-363 (442)
156 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.3E-21 2.7E-26 137.3 13.4 142 1-157 6-156 (157)
157 KOG0071 GTP-binding ADP-ribosy 99.9 2.3E-21 5E-26 127.9 12.7 150 1-157 22-177 (180)
158 PRK15494 era GTPase Era; Provi 99.9 2.1E-21 4.5E-26 152.0 14.7 147 1-158 57-216 (339)
159 PRK03003 GTP-binding protein D 99.9 1.7E-21 3.8E-26 159.0 14.8 149 1-159 43-200 (472)
160 PF08477 Miro: Miro-like prote 99.9 1.3E-21 2.8E-26 131.4 11.2 111 1-112 4-119 (119)
161 PRK15467 ethanolamine utilizat 99.9 1.8E-21 4E-26 136.9 12.2 138 1-160 6-149 (158)
162 TIGR01393 lepA GTP-binding pro 99.9 5E-21 1.1E-25 159.2 16.7 152 1-158 8-180 (595)
163 PRK11058 GTPase HflX; Provisio 99.9 8.2E-21 1.8E-25 152.1 17.0 154 1-160 202-364 (426)
164 PRK05291 trmE tRNA modificatio 99.9 2.1E-21 4.7E-26 157.0 13.2 143 1-159 220-371 (449)
165 PRK03003 GTP-binding protein D 99.9 2.7E-21 5.8E-26 157.9 13.7 153 1-159 216-383 (472)
166 PRK12296 obgE GTPase CgtA; Rev 99.9 6.8E-21 1.5E-25 153.7 15.4 158 1-161 164-343 (500)
167 cd01889 SelB_euk SelB subfamil 99.9 4.1E-21 8.8E-26 139.6 12.8 154 1-158 5-186 (192)
168 TIGR00437 feoB ferrous iron tr 99.9 7.8E-21 1.7E-25 158.0 15.7 146 3-157 1-154 (591)
169 TIGR00487 IF-2 translation ini 99.9 1E-20 2.2E-25 156.7 16.0 147 1-155 92-247 (587)
170 PRK12298 obgE GTPase CgtA; Rev 99.9 2.2E-20 4.8E-25 148.1 17.1 158 1-160 164-335 (390)
171 cd00880 Era_like Era (E. coli 99.9 1E-20 2.2E-25 132.7 13.2 151 1-156 1-162 (163)
172 TIGR03594 GTPase_EngA ribosome 99.9 1.3E-20 2.9E-25 152.7 15.7 153 1-159 177-345 (429)
173 PRK00089 era GTPase Era; Revie 99.9 1.3E-20 2.8E-25 145.4 14.3 153 1-158 10-171 (292)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-20 2.3E-25 138.4 13.0 111 45-157 83-198 (203)
175 cd04163 Era Era subfamily. Er 99.9 2.2E-20 4.8E-25 132.1 14.0 151 1-156 8-167 (168)
176 PRK00454 engB GTP-binding prot 99.8 8.3E-20 1.8E-24 133.0 15.5 150 1-157 29-193 (196)
177 cd01895 EngA2 EngA2 subfamily. 99.8 9E-20 1.9E-24 129.9 15.0 150 1-156 7-173 (174)
178 CHL00189 infB translation init 99.8 5.2E-20 1.1E-24 154.8 15.7 150 1-157 249-409 (742)
179 TIGR00475 selB selenocysteine- 99.8 7.4E-20 1.6E-24 152.1 16.2 150 1-159 5-167 (581)
180 PRK05306 infB translation init 99.8 6.3E-20 1.4E-24 155.5 15.8 146 1-155 295-449 (787)
181 COG1159 Era GTPase [General fu 99.8 6.1E-20 1.3E-24 136.7 13.7 154 1-159 11-173 (298)
182 KOG0076 GTP-binding ADP-ribosy 99.8 2.1E-20 4.5E-25 127.8 9.4 154 1-160 22-189 (197)
183 TIGR03598 GTPase_YsxC ribosome 99.8 9.5E-20 2.1E-24 130.9 13.0 140 1-147 23-179 (179)
184 cd04105 SR_beta Signal recogni 99.8 3.6E-19 7.8E-24 130.2 15.9 113 1-114 5-122 (203)
185 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-19 2.3E-24 147.5 14.5 149 1-159 4-161 (429)
186 PRK00093 GTP-binding protein D 99.8 1.9E-19 4.2E-24 146.1 14.4 142 1-155 6-159 (435)
187 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.6E-20 3.5E-25 130.1 6.4 155 1-158 15-169 (216)
188 PF00009 GTP_EFTU: Elongation 99.8 5E-20 1.1E-24 133.4 9.4 154 1-158 8-187 (188)
189 PRK05433 GTP-binding protein L 99.8 4.2E-19 9.1E-24 147.9 16.1 153 1-159 12-185 (600)
190 PRK09518 bifunctional cytidyla 99.8 3.8E-19 8.3E-24 151.5 15.9 149 1-159 280-437 (712)
191 TIGR00491 aIF-2 translation in 99.8 8.3E-19 1.8E-23 145.2 17.1 152 1-159 9-217 (590)
192 PRK00093 GTP-binding protein D 99.8 2.8E-19 6.1E-24 145.2 14.2 152 1-159 178-345 (435)
193 PRK09554 feoB ferrous iron tra 99.8 7E-19 1.5E-23 149.8 17.0 148 1-157 8-167 (772)
194 COG1160 Predicted GTPases [Gen 99.8 1.6E-19 3.5E-24 141.5 11.4 148 1-158 8-165 (444)
195 PRK09518 bifunctional cytidyla 99.8 1.3E-18 2.8E-23 148.3 15.9 151 1-159 455-622 (712)
196 KOG0072 GTP-binding ADP-ribosy 99.8 6.1E-20 1.3E-24 121.7 4.4 152 1-159 23-180 (182)
197 COG0486 ThdF Predicted GTPase 99.8 1.7E-18 3.6E-23 136.2 13.2 149 1-160 222-378 (454)
198 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.1E-18 2.3E-23 128.3 11.4 146 1-149 4-185 (208)
199 cd01876 YihA_EngB The YihA (En 99.8 3.2E-18 6.9E-23 121.2 13.4 147 1-156 4-169 (170)
200 cd01896 DRG The developmentall 99.8 1.4E-17 3.1E-22 124.1 17.0 148 1-157 5-225 (233)
201 KOG4423 GTP-binding protein-li 99.8 1.1E-20 2.4E-25 130.5 -0.4 163 1-163 30-199 (229)
202 TIGR01394 TypA_BipA GTP-bindin 99.8 3.2E-18 6.9E-23 142.3 14.1 154 1-158 6-191 (594)
203 PRK10218 GTP-binding protein; 99.8 9.2E-18 2E-22 139.5 16.0 154 1-158 10-195 (607)
204 KOG0074 GTP-binding ADP-ribosy 99.8 1.6E-18 3.4E-23 114.7 9.1 146 1-155 22-176 (185)
205 PRK04004 translation initiatio 99.8 1.9E-17 4E-22 137.7 17.5 150 1-157 11-217 (586)
206 cd04168 TetM_like Tet(M)-like 99.8 1.6E-17 3.4E-22 124.1 15.2 110 1-114 4-129 (237)
207 PRK12317 elongation factor 1-a 99.8 2.1E-18 4.6E-23 139.5 11.1 148 1-150 11-197 (425)
208 COG2229 Predicted GTPase [Gene 99.8 2.8E-17 6.1E-22 113.9 14.8 148 1-156 15-176 (187)
209 TIGR00483 EF-1_alpha translati 99.8 3.5E-18 7.6E-23 138.2 11.3 148 1-150 12-199 (426)
210 PRK10512 selenocysteinyl-tRNA- 99.8 2.1E-17 4.6E-22 138.0 16.1 152 1-158 5-166 (614)
211 PF10662 PduV-EutP: Ethanolami 99.8 1.6E-17 3.5E-22 112.6 12.3 132 1-154 6-142 (143)
212 TIGR03680 eif2g_arch translati 99.8 9E-18 2E-22 134.7 12.3 112 44-157 79-195 (406)
213 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.1E-17 6.8E-22 118.9 13.9 143 1-147 7-172 (195)
214 COG1160 Predicted GTPases [Gen 99.8 2.5E-17 5.4E-22 129.3 14.1 155 1-160 183-353 (444)
215 cd01883 EF1_alpha Eukaryotic e 99.7 1E-17 2.2E-22 124.0 9.6 145 1-147 4-194 (219)
216 cd04167 Snu114p Snu114p subfam 99.7 2.6E-17 5.7E-22 121.4 11.7 110 1-114 5-136 (213)
217 COG0370 FeoB Fe2+ transport sy 99.7 4.8E-17 1E-21 133.1 14.2 148 1-157 8-163 (653)
218 PRK04000 translation initiatio 99.7 3.7E-17 8.1E-22 131.2 12.8 111 45-157 85-200 (411)
219 COG1084 Predicted GTPase [Gene 99.7 1.6E-16 3.4E-21 119.8 13.7 154 1-160 173-338 (346)
220 COG2262 HflX GTPases [General 99.7 3.9E-16 8.3E-21 121.0 15.8 162 1-169 197-367 (411)
221 COG0218 Predicted GTPase [Gene 99.7 3.2E-16 7E-21 111.0 14.0 151 1-159 29-198 (200)
222 KOG1489 Predicted GTP-binding 99.7 2.8E-16 6E-21 117.7 13.4 151 1-155 201-364 (366)
223 cd04165 GTPBP1_like GTPBP1-lik 99.7 3.7E-16 8.1E-21 115.7 13.7 150 1-154 4-219 (224)
224 cd04169 RF3 RF3 subfamily. Pe 99.7 5.7E-16 1.2E-20 117.6 14.9 111 1-115 7-137 (267)
225 PRK12736 elongation factor Tu; 99.7 3.8E-16 8.3E-21 124.9 14.2 140 1-144 17-179 (394)
226 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.2E-17 1.6E-21 119.1 9.1 159 1-162 4-180 (232)
227 COG0532 InfB Translation initi 99.7 4.4E-16 9.5E-21 124.3 14.0 151 1-158 10-170 (509)
228 PRK12735 elongation factor Tu; 99.7 6.8E-16 1.5E-20 123.6 14.2 141 1-145 17-180 (396)
229 KOG1423 Ras-like GTPase ERA [C 99.7 4.3E-16 9.4E-21 116.2 11.8 153 1-157 77-270 (379)
230 TIGR00485 EF-Tu translation el 99.7 7.2E-16 1.6E-20 123.5 13.4 140 1-144 17-179 (394)
231 KOG1707 Predicted Ras related/ 99.7 1.7E-16 3.7E-21 127.1 8.5 157 1-159 14-176 (625)
232 KOG0077 Vesicle coat complex C 99.7 2.2E-16 4.8E-21 107.4 7.5 149 1-156 25-191 (193)
233 CHL00071 tufA elongation facto 99.7 2.3E-15 4.9E-20 121.1 14.1 142 1-146 17-181 (409)
234 cd04170 EF-G_bact Elongation f 99.7 2.9E-15 6.2E-20 114.3 13.8 144 1-150 4-165 (268)
235 cd01850 CDC_Septin CDC/Septin. 99.7 1.9E-15 4.1E-20 115.3 12.6 138 1-142 9-186 (276)
236 PRK00741 prfC peptide chain re 99.7 3.8E-15 8.3E-20 122.5 15.1 110 1-114 15-144 (526)
237 cd01886 EF-G Elongation factor 99.7 1.2E-15 2.6E-20 115.9 11.2 111 1-115 4-130 (270)
238 cd04104 p47_IIGP_like p47 (47- 99.7 4.7E-15 1E-19 108.1 13.9 154 1-162 6-188 (197)
239 COG0536 Obg Predicted GTPase [ 99.7 3.8E-15 8.2E-20 112.9 13.3 160 1-161 164-336 (369)
240 cd01899 Ygr210 Ygr210 subfamil 99.7 9.1E-15 2E-19 113.2 15.5 79 1-79 3-110 (318)
241 cd01885 EF2 EF2 (for archaea a 99.6 2.5E-15 5.4E-20 110.9 11.5 110 1-114 5-138 (222)
242 PRK05124 cysN sulfate adenylyl 99.6 3.6E-15 7.7E-20 121.6 12.9 146 1-149 32-216 (474)
243 COG3596 Predicted GTPase [Gene 99.6 1.4E-15 3E-20 112.2 9.0 156 1-160 44-224 (296)
244 TIGR02034 CysN sulfate adenyly 99.6 5.9E-15 1.3E-19 118.5 12.9 145 1-148 5-187 (406)
245 COG1163 DRG Predicted GTPase [ 99.6 8E-15 1.7E-19 110.4 12.3 148 1-157 68-288 (365)
246 PRK13351 elongation factor G; 99.6 1.1E-14 2.4E-19 124.3 14.3 110 1-114 13-138 (687)
247 PLN00043 elongation factor 1-a 99.6 1.5E-14 3.2E-19 117.2 14.0 143 1-148 12-203 (447)
248 PRK00049 elongation factor Tu; 99.6 1.7E-14 3.8E-19 115.5 14.1 140 1-144 17-179 (396)
249 PLN03126 Elongation factor Tu; 99.6 1.1E-14 2.4E-19 118.5 13.0 142 1-146 86-250 (478)
250 KOG0462 Elongation factor-type 99.6 8.8E-15 1.9E-19 116.7 11.7 151 5-159 69-236 (650)
251 KOG1145 Mitochondrial translat 99.6 2.2E-14 4.8E-19 114.5 13.9 148 1-156 158-314 (683)
252 PF01926 MMR_HSR1: 50S ribosom 99.6 9.7E-15 2.1E-19 97.5 9.8 103 1-110 4-116 (116)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 4.3E-14 9.3E-19 103.0 13.8 157 1-159 5-185 (196)
254 KOG1191 Mitochondrial GTPase [ 99.6 6.3E-15 1.4E-19 116.3 9.7 160 1-162 273-454 (531)
255 PLN03127 Elongation factor Tu; 99.6 4.4E-14 9.5E-19 114.4 14.1 152 1-156 66-250 (447)
256 PTZ00141 elongation factor 1- 99.6 2.9E-14 6.4E-19 115.5 12.8 145 1-148 12-203 (446)
257 PRK05506 bifunctional sulfate 99.6 2.6E-14 5.7E-19 120.8 13.0 145 1-148 29-211 (632)
258 KOG1490 GTP-binding protein CR 99.6 1.7E-14 3.7E-19 114.1 10.0 169 1-172 173-355 (620)
259 PRK12740 elongation factor G; 99.6 9.9E-14 2.1E-18 118.2 15.5 109 2-114 1-125 (668)
260 PRK12739 elongation factor G; 99.6 9.9E-14 2.2E-18 118.3 14.9 110 1-114 13-138 (691)
261 COG0481 LepA Membrane GTPase L 99.6 9.4E-14 2E-18 109.4 13.0 146 5-159 18-187 (603)
262 PF09439 SRPRB: Signal recogni 99.6 8E-15 1.7E-19 103.8 6.5 110 1-114 8-125 (181)
263 PRK14845 translation initiatio 99.5 3.8E-13 8.3E-18 117.2 17.3 144 7-157 472-672 (1049)
264 TIGR00503 prfC peptide chain r 99.5 1.1E-13 2.4E-18 114.0 13.1 110 1-114 16-145 (527)
265 PRK09866 hypothetical protein; 99.5 6.9E-13 1.5E-17 109.0 17.0 108 46-155 231-350 (741)
266 PTZ00327 eukaryotic translatio 99.5 1E-13 2.2E-18 112.1 12.2 111 45-157 117-232 (460)
267 TIGR00484 EF-G translation elo 99.5 1.4E-13 3E-18 117.5 13.2 111 1-115 15-141 (689)
268 PRK00007 elongation factor G; 99.5 5.8E-13 1.3E-17 113.6 15.3 110 1-114 15-140 (693)
269 PRK09602 translation-associate 99.5 9.7E-13 2.1E-17 104.9 15.4 79 1-79 6-113 (396)
270 COG4917 EutP Ethanolamine util 99.5 3.3E-13 7.1E-18 87.9 7.7 133 1-155 6-143 (148)
271 COG5256 TEF1 Translation elong 99.5 4.8E-13 1E-17 104.0 9.7 148 1-149 12-202 (428)
272 TIGR00157 ribosome small subun 99.4 5E-13 1.1E-17 100.3 8.6 96 56-155 24-120 (245)
273 KOG3905 Dynein light intermedi 99.4 1.1E-11 2.4E-16 93.7 14.0 156 1-159 57-291 (473)
274 PF03029 ATP_bind_1: Conserved 99.4 3.7E-13 8.1E-18 100.4 5.8 111 46-157 92-236 (238)
275 TIGR00490 aEF-2 translation el 99.4 1.4E-12 3E-17 111.7 9.2 110 1-114 24-151 (720)
276 PRK13768 GTPase; Provisional 99.4 2.4E-12 5.2E-17 97.2 9.2 109 46-157 98-246 (253)
277 COG2895 CysN GTPases - Sulfate 99.4 5.1E-12 1.1E-16 96.4 10.6 144 2-148 12-193 (431)
278 cd01853 Toc34_like Toc34-like 99.4 1E-11 2.3E-16 93.2 11.5 113 1-115 36-163 (249)
279 TIGR00101 ureG urease accessor 99.4 1.5E-11 3.2E-16 89.6 11.8 102 45-157 92-195 (199)
280 PF05783 DLIC: Dynein light in 99.4 3.4E-11 7.3E-16 97.5 15.0 157 1-160 30-266 (472)
281 KOG1144 Translation initiation 99.4 6E-12 1.3E-16 103.8 10.7 159 1-166 480-695 (1064)
282 PRK09435 membrane ATPase/prote 99.4 1.2E-11 2.6E-16 96.1 11.7 106 44-160 148-262 (332)
283 TIGR00991 3a0901s02IAP34 GTP-b 99.4 1.6E-11 3.6E-16 93.7 12.1 118 1-120 43-172 (313)
284 PTZ00258 GTP-binding protein; 99.4 2.2E-11 4.7E-16 96.4 13.1 79 1-79 26-126 (390)
285 PF04548 AIG1: AIG1 family; I 99.4 1E-11 2.2E-16 91.5 10.4 156 1-160 5-188 (212)
286 TIGR00073 hypB hydrogenase acc 99.3 9.7E-12 2.1E-16 91.3 9.1 56 101-156 148-205 (207)
287 KOG0090 Signal recognition par 99.3 3.3E-11 7.1E-16 85.9 10.9 109 1-114 43-158 (238)
288 smart00010 small_GTPase Small 99.3 2.9E-11 6.3E-16 81.3 10.0 110 1-147 5-115 (124)
289 PRK09601 GTP-binding protein Y 99.3 1.9E-10 4E-15 90.2 14.7 79 1-79 7-107 (364)
290 KOG1707 Predicted Ras related/ 99.3 7.4E-11 1.6E-15 95.3 12.3 153 1-159 430-584 (625)
291 PRK07560 elongation factor EF- 99.3 5.1E-11 1.1E-15 102.4 11.9 110 1-114 25-152 (731)
292 PTZ00416 elongation factor 2; 99.3 2.1E-11 4.5E-16 105.9 9.4 110 1-114 24-157 (836)
293 PLN00116 translation elongatio 99.3 3.7E-11 7.9E-16 104.6 10.6 110 1-114 24-163 (843)
294 COG1217 TypA Predicted membran 99.3 7E-11 1.5E-15 93.3 10.9 150 5-158 14-195 (603)
295 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.5E-10 3.2E-15 86.1 12.3 132 1-144 44-182 (225)
296 PF00350 Dynamin_N: Dynamin fa 99.3 1.3E-10 2.9E-15 82.4 11.3 62 47-111 103-168 (168)
297 COG0378 HypB Ni2+-binding GTPa 99.2 3.2E-11 6.9E-16 85.2 7.5 78 71-157 120-200 (202)
298 TIGR02836 spore_IV_A stage IV 99.2 2.4E-10 5.2E-15 89.9 12.7 137 1-142 22-219 (492)
299 KOG1532 GTPase XAB1, interacts 99.2 1.1E-10 2.4E-15 86.4 10.3 118 45-162 116-268 (366)
300 cd01900 YchF YchF subfamily. 99.2 2.6E-10 5.6E-15 86.6 12.0 79 1-79 3-103 (274)
301 KOG3886 GTP-binding protein [S 99.2 5.3E-11 1.1E-15 85.9 6.5 142 1-144 9-165 (295)
302 TIGR00750 lao LAO/AO transport 99.2 1.9E-10 4.2E-15 89.1 9.2 104 44-158 126-238 (300)
303 cd00066 G-alpha G protein alph 99.1 1.9E-09 4E-14 84.1 13.7 120 42-161 158-314 (317)
304 COG4108 PrfC Peptide chain rel 99.1 5.2E-10 1.1E-14 87.8 10.3 126 1-133 17-163 (528)
305 COG0480 FusA Translation elong 99.1 2.9E-10 6.2E-15 96.0 9.1 110 1-114 15-141 (697)
306 PF00735 Septin: Septin; Inte 99.1 4.1E-10 8.8E-15 86.1 9.2 135 1-140 9-183 (281)
307 PF05049 IIGP: Interferon-indu 99.1 3.2E-10 6.9E-15 88.9 8.5 154 1-162 40-222 (376)
308 KOG0458 Elongation factor 1 al 99.1 2.2E-10 4.7E-15 92.7 7.7 147 1-149 182-373 (603)
309 COG5257 GCD11 Translation init 99.1 1.9E-10 4E-15 87.0 6.5 113 45-159 86-203 (415)
310 COG0050 TufB GTPases - transla 99.1 5.5E-10 1.2E-14 83.6 8.9 182 2-191 18-224 (394)
311 COG1703 ArgK Putative periplas 99.1 1.3E-09 2.9E-14 81.9 10.9 104 45-160 144-256 (323)
312 smart00275 G_alpha G protein a 99.1 6.3E-09 1.4E-13 81.9 15.1 121 42-162 181-338 (342)
313 KOG0410 Predicted GTP binding 99.1 2E-10 4.4E-15 86.9 6.2 175 1-187 183-370 (410)
314 PRK10463 hydrogenase nickel in 99.1 3.2E-10 7E-15 86.1 6.5 55 102-156 231-287 (290)
315 smart00053 DYNc Dynamin, GTPas 99.1 3.4E-09 7.3E-14 79.0 11.2 68 45-115 125-206 (240)
316 PF03308 ArgK: ArgK protein; 99.0 3.6E-10 7.9E-15 83.7 5.4 102 45-160 122-232 (266)
317 cd01855 YqeH YqeH. YqeH is an 99.0 2.3E-09 4.9E-14 77.7 9.5 94 58-158 24-125 (190)
318 KOG0461 Selenocysteine-specifi 99.0 7.9E-09 1.7E-13 79.1 12.2 154 1-159 12-194 (522)
319 TIGR00993 3a0901s04IAP86 chlor 99.0 5.6E-09 1.2E-13 86.7 11.7 113 1-115 123-250 (763)
320 cd01859 MJ1464 MJ1464. This f 99.0 1.1E-09 2.3E-14 76.9 6.6 96 58-159 2-97 (156)
321 COG5019 CDC3 Septin family pro 99.0 7.5E-09 1.6E-13 79.9 11.5 157 1-164 28-225 (373)
322 COG0012 Predicted GTPase, prob 99.0 2.4E-08 5.2E-13 77.6 14.0 79 1-79 7-108 (372)
323 COG3276 SelB Selenocysteine-sp 99.0 1.1E-08 2.3E-13 80.7 12.1 153 2-158 6-162 (447)
324 PRK12289 GTPase RsgA; Reviewed 99.0 3.5E-09 7.7E-14 83.3 8.5 91 60-155 81-172 (352)
325 KOG0468 U5 snRNP-specific prot 98.9 4.9E-09 1.1E-13 86.2 8.9 109 1-113 133-261 (971)
326 KOG2655 Septin family protein 98.9 1.3E-08 2.8E-13 79.1 10.5 156 1-164 26-220 (366)
327 KOG3887 Predicted small GTPase 98.9 8.6E-09 1.9E-13 75.2 8.9 160 1-163 32-207 (347)
328 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5.4E-09 1.2E-13 80.4 8.4 88 63-155 73-161 (287)
329 KOG0705 GTPase-activating prot 98.9 1.1E-08 2.4E-13 82.5 9.8 173 1-180 35-212 (749)
330 PRK12288 GTPase RsgA; Reviewed 98.9 1.6E-08 3.5E-13 79.6 9.7 87 66-155 118-205 (347)
331 PRK00098 GTPase RsgA; Reviewed 98.9 9.7E-09 2.1E-13 79.5 7.6 85 65-153 77-162 (298)
332 TIGR03597 GTPase_YqeH ribosome 98.8 2.4E-08 5.1E-13 79.3 9.2 95 55-156 50-151 (360)
333 KOG1954 Endocytosis/signaling 98.8 6.6E-08 1.4E-12 74.8 9.4 112 1-115 63-225 (532)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 1.6E-08 3.4E-13 69.7 5.1 51 1-55 88-138 (141)
335 KOG1547 Septin CDC10 and relat 98.7 2.5E-07 5.4E-12 67.7 9.3 139 1-144 51-229 (336)
336 KOG0460 Mitochondrial translat 98.6 7.5E-07 1.6E-11 68.4 11.6 184 2-191 60-268 (449)
337 KOG0082 G-protein alpha subuni 98.6 9.8E-07 2.1E-11 68.8 12.5 126 39-164 189-350 (354)
338 cd01858 NGP_1 NGP-1. Autoanti 98.6 2.2E-07 4.7E-12 65.3 6.9 89 64-157 4-94 (157)
339 KOG1486 GTP-binding protein DR 98.6 1.9E-06 4.2E-11 63.6 11.8 103 1-105 67-177 (364)
340 KOG0465 Mitochondrial elongati 98.6 3.3E-07 7E-12 75.1 8.5 105 5-113 48-168 (721)
341 PRK10416 signal recognition pa 98.6 3.2E-07 7E-12 71.5 8.3 95 44-151 196-303 (318)
342 TIGR03348 VI_IcmF type VI secr 98.5 1.1E-06 2.3E-11 79.7 12.0 109 1-114 116-256 (1169)
343 KOG0448 Mitofusin 1 GTPase, in 98.5 1.9E-06 4.1E-11 71.6 12.3 91 47-141 208-309 (749)
344 COG1618 Predicted nucleotide k 98.5 6.2E-06 1.3E-10 56.9 12.8 139 1-157 10-175 (179)
345 cd01849 YlqF_related_GTPase Yl 98.5 5.1E-07 1.1E-11 63.2 7.9 85 70-158 1-85 (155)
346 KOG0464 Elongation factor G [T 98.5 1.4E-07 3E-12 74.2 4.9 126 3-134 44-185 (753)
347 TIGR00064 ftsY signal recognit 98.5 4.3E-07 9.2E-12 69.4 7.5 96 44-151 154-261 (272)
348 PF03193 DUF258: Protein of un 98.5 9.2E-08 2E-12 66.7 3.2 56 1-59 40-101 (161)
349 COG5258 GTPBP1 GTPase [General 98.5 1.8E-06 3.9E-11 67.4 10.1 100 45-148 201-329 (527)
350 cd01856 YlqF YlqF. Proteins o 98.5 6.5E-07 1.4E-11 63.8 7.3 94 57-158 8-101 (171)
351 PRK14974 cell division protein 98.5 1E-06 2.2E-11 69.1 8.2 95 45-152 223-324 (336)
352 TIGR01425 SRP54_euk signal rec 98.5 2.1E-06 4.5E-11 69.2 10.1 85 44-138 182-272 (429)
353 TIGR03596 GTPase_YlqF ribosome 98.4 4E-07 8.7E-12 69.8 5.8 51 1-55 123-173 (276)
354 TIGR00092 GTP-binding protein 98.4 8.7E-07 1.9E-11 69.8 7.5 79 1-79 7-108 (368)
355 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 1E-06 2.2E-11 60.7 7.0 78 62-145 5-84 (141)
356 PRK13796 GTPase YqeH; Provisio 98.4 2.3E-06 5E-11 68.2 9.8 93 56-156 57-157 (365)
357 PRK12288 GTPase RsgA; Reviewed 98.4 3.1E-07 6.7E-12 72.4 4.7 56 1-59 210-271 (347)
358 PRK09563 rbgA GTPase YlqF; Rev 98.4 6.7E-07 1.5E-11 69.0 6.3 51 1-55 126-176 (287)
359 COG1161 Predicted GTPases [Gen 98.4 3.6E-07 7.7E-12 71.5 4.8 51 1-55 137-187 (322)
360 TIGR03596 GTPase_YlqF ribosome 98.4 3E-06 6.4E-11 65.1 9.4 101 53-161 5-106 (276)
361 PRK01889 GTPase RsgA; Reviewed 98.4 1.4E-06 3E-11 69.1 7.8 83 66-154 110-193 (356)
362 KOG2486 Predicted GTPase [Gene 98.4 2.4E-07 5.3E-12 69.1 3.0 146 1-155 141-313 (320)
363 cd01851 GBP Guanylate-binding 98.4 6E-06 1.3E-10 61.4 10.5 81 1-82 12-105 (224)
364 COG1162 Predicted GTPases [Gen 98.3 5.3E-07 1.1E-11 68.6 4.2 56 1-59 169-230 (301)
365 PRK12289 GTPase RsgA; Reviewed 98.3 6E-07 1.3E-11 70.8 4.6 56 1-59 177-238 (352)
366 TIGR00157 ribosome small subun 98.3 8.9E-07 1.9E-11 66.7 4.6 55 1-59 125-185 (245)
367 KOG1491 Predicted GTP-binding 98.3 2.8E-06 6.1E-11 65.2 6.8 79 1-79 25-125 (391)
368 PRK14722 flhF flagellar biosyn 98.3 5E-06 1.1E-10 65.9 8.5 90 44-139 215-315 (374)
369 KOG0466 Translation initiation 98.3 3.8E-07 8.3E-12 69.0 2.0 114 45-160 125-243 (466)
370 cd03112 CobW_like The function 98.3 5.8E-06 1.3E-10 58.1 7.9 63 45-113 87-158 (158)
371 PF09547 Spore_IV_A: Stage IV 98.3 1.8E-05 3.9E-10 62.9 11.0 137 1-142 22-219 (492)
372 KOG0467 Translation elongation 98.3 2.7E-06 5.9E-11 71.4 6.7 105 5-113 18-136 (887)
373 COG1162 Predicted GTPases [Gen 98.2 8.8E-06 1.9E-10 62.1 8.8 92 61-155 72-164 (301)
374 PF00503 G-alpha: G-protein al 98.2 1E-05 2.3E-10 65.1 9.9 115 43-157 234-389 (389)
375 cd03115 SRP The signal recogni 98.2 1.2E-05 2.6E-10 57.3 8.8 84 44-137 82-171 (173)
376 COG5192 BMS1 GTP-binding prote 98.2 1.4E-05 3.1E-10 65.4 10.1 130 1-142 74-210 (1077)
377 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.4E-05 3.1E-10 61.6 9.7 101 52-160 7-108 (287)
378 PF00448 SRP54: SRP54-type pro 98.2 1E-05 2.2E-10 58.9 8.1 84 45-139 84-174 (196)
379 COG3523 IcmF Type VI protein s 98.2 1.7E-05 3.8E-10 70.7 10.9 114 1-115 130-270 (1188)
380 KOG4273 Uncharacterized conser 98.2 2.1E-05 4.7E-10 58.1 9.6 156 1-162 9-226 (418)
381 PRK13796 GTPase YqeH; Provisio 98.2 2.3E-06 5.1E-11 68.1 4.2 53 1-56 165-221 (365)
382 KOG1143 Predicted translation 98.1 7.7E-06 1.7E-10 63.8 6.6 98 46-147 250-377 (591)
383 KOG1487 GTP-binding protein DR 98.1 1.7E-05 3.8E-10 58.9 7.6 79 1-81 64-149 (358)
384 PRK14721 flhF flagellar biosyn 98.1 1.9E-05 4.1E-10 63.7 8.5 94 45-150 270-370 (420)
385 TIGR03597 GTPase_YqeH ribosome 98.1 4.9E-06 1.1E-10 66.2 5.1 53 1-56 159-215 (360)
386 PRK00098 GTPase RsgA; Reviewed 98.1 4.9E-06 1.1E-10 64.5 4.8 55 1-58 169-229 (298)
387 cd03114 ArgK-like The function 98.1 2E-05 4.4E-10 54.7 7.0 58 44-112 91-148 (148)
388 PRK12727 flagellar biosynthesi 98.1 5.8E-05 1.2E-09 62.3 10.6 90 44-146 428-523 (559)
389 cd01854 YjeQ_engC YjeQ/EngC. 98.0 6.5E-06 1.4E-10 63.5 4.5 56 1-59 166-227 (287)
390 PRK05703 flhF flagellar biosyn 98.0 6.6E-05 1.4E-09 61.0 10.3 91 44-146 299-396 (424)
391 KOG3859 Septins (P-loop GTPase 98.0 1.7E-05 3.7E-10 59.5 6.1 53 2-54 48-104 (406)
392 PRK00771 signal recognition pa 98.0 4.5E-05 9.8E-10 61.9 8.3 85 45-139 176-266 (437)
393 cd02038 FleN-like FleN is a me 98.0 2.9E-05 6.3E-10 53.3 6.2 104 3-114 7-110 (139)
394 PRK11537 putative GTP-binding 98.0 0.00012 2.7E-09 57.2 10.3 85 45-139 91-186 (318)
395 KOG0447 Dynamin-like GTP bindi 97.9 0.00054 1.2E-08 56.3 13.9 82 46-130 413-508 (980)
396 PRK10867 signal recognition pa 97.9 6.5E-05 1.4E-09 60.9 8.7 87 44-140 183-275 (433)
397 KOG0085 G protein subunit Galp 97.9 3E-05 6.5E-10 56.7 6.1 121 42-162 196-353 (359)
398 KOG1534 Putative transcription 97.9 5.6E-06 1.2E-10 59.6 2.3 71 45-115 98-178 (273)
399 PRK14723 flhF flagellar biosyn 97.9 0.00015 3.2E-09 62.5 11.0 106 45-159 264-380 (767)
400 COG1419 FlhF Flagellar GTP-bin 97.9 0.00012 2.5E-09 58.2 9.4 129 1-139 208-372 (407)
401 KOG0099 G protein subunit Galp 97.9 9.2E-05 2E-09 55.2 8.3 120 43-162 200-373 (379)
402 PRK06995 flhF flagellar biosyn 97.9 2.5E-05 5.5E-10 64.0 5.6 94 45-150 335-435 (484)
403 COG0523 Putative GTPases (G3E 97.9 0.00032 6.8E-09 54.9 11.4 88 45-140 85-184 (323)
404 PRK11889 flhF flagellar biosyn 97.9 5.4E-05 1.2E-09 60.3 7.1 85 45-139 321-411 (436)
405 KOG0463 GTP-binding protein GP 97.9 5E-05 1.1E-09 59.4 6.4 104 45-154 219-353 (641)
406 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00013 2.9E-09 41.3 6.2 47 65-112 10-58 (58)
407 TIGR00959 ffh signal recogniti 97.8 0.00015 3.2E-09 58.9 9.0 87 44-140 182-274 (428)
408 KOG1424 Predicted GTP-binding 97.8 2E-05 4.3E-10 63.8 3.5 52 1-56 319-370 (562)
409 PRK12726 flagellar biosynthesi 97.8 6.4E-05 1.4E-09 59.6 5.9 92 44-147 285-382 (407)
410 cd03111 CpaE_like This protein 97.8 0.00018 4E-09 46.9 7.1 99 3-110 7-106 (106)
411 PRK12724 flagellar biosynthesi 97.8 7.4E-05 1.6E-09 60.0 6.1 86 44-139 299-393 (432)
412 PRK13695 putative NTPase; Prov 97.7 0.00055 1.2E-08 48.8 9.8 78 64-157 92-172 (174)
413 PRK12723 flagellar biosynthesi 97.7 0.00069 1.5E-08 54.3 11.0 91 44-146 254-351 (388)
414 PF02492 cobW: CobW/HypB/UreG, 97.7 0.00011 2.3E-09 52.7 5.7 80 45-131 85-170 (178)
415 PF03266 NTPase_1: NTPase; In 97.6 0.00023 4.9E-09 50.5 6.6 131 1-146 4-163 (168)
416 cd02036 MinD Bacterial cell di 97.6 0.0025 5.3E-08 45.4 11.7 84 46-136 64-147 (179)
417 cd03110 Fer4_NifH_child This p 97.6 0.0012 2.6E-08 47.2 9.7 85 43-136 91-175 (179)
418 cd02042 ParA ParA and ParB of 97.6 0.00055 1.2E-08 44.3 7.2 77 4-92 8-84 (104)
419 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00058 1.3E-08 43.2 7.1 67 1-81 4-71 (99)
420 KOG0780 Signal recognition par 97.5 0.00032 7E-09 55.2 6.1 47 43-89 182-234 (483)
421 KOG1533 Predicted GTPase [Gene 97.5 9.6E-05 2.1E-09 54.3 2.9 67 45-113 97-175 (290)
422 PRK06731 flhF flagellar biosyn 97.5 0.001 2.2E-08 50.8 8.5 86 44-139 154-245 (270)
423 cd00009 AAA The AAA+ (ATPases 97.4 0.00096 2.1E-08 45.4 7.6 21 1-21 24-44 (151)
424 PF07015 VirC1: VirC1 protein; 97.4 0.00022 4.9E-09 52.6 4.1 102 45-151 84-187 (231)
425 KOG0459 Polypeptide release fa 97.3 0.00025 5.4E-09 56.0 3.2 117 32-150 144-278 (501)
426 TIGR02475 CobW cobalamin biosy 97.3 0.0046 1E-07 49.0 10.3 19 1-19 9-27 (341)
427 PF13401 AAA_22: AAA domain; P 97.3 0.00015 3.3E-09 48.9 1.7 20 1-20 9-28 (131)
428 PF13555 AAA_29: P-loop contai 97.2 0.00019 4.1E-09 41.7 1.8 18 1-18 28-45 (62)
429 COG0541 Ffh Signal recognition 97.2 0.0018 3.9E-08 52.0 7.8 63 45-114 183-252 (451)
430 PF00004 AAA: ATPase family as 97.2 0.0017 3.6E-08 43.7 6.3 20 1-20 3-22 (132)
431 KOG2484 GTPase [General functi 97.1 0.00028 6.1E-09 55.6 2.5 51 1-55 257-307 (435)
432 PF05621 TniB: Bacterial TniB 97.1 0.0028 6.1E-08 48.8 7.7 96 1-110 66-189 (302)
433 KOG2485 Conserved ATP/GTP bind 97.1 0.00027 5.9E-09 54.0 2.2 54 1-55 148-206 (335)
434 TIGR00150 HI0065_YjeE ATPase, 97.1 0.002 4.3E-08 43.7 5.6 20 1-20 27-46 (133)
435 COG0802 Predicted ATPase or ki 97.0 0.0027 5.8E-08 43.6 5.9 72 2-75 31-104 (149)
436 PF13207 AAA_17: AAA domain; P 97.0 0.00031 6.8E-09 46.7 1.4 19 1-19 4-22 (121)
437 COG3845 ABC-type uncharacteriz 97.0 0.0069 1.5E-07 49.4 8.9 55 57-112 147-201 (501)
438 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0055 1.2E-07 43.8 7.6 20 1-20 30-49 (177)
439 COG0552 FtsY Signal recognitio 97.0 0.0021 4.5E-08 49.9 5.6 94 44-150 221-327 (340)
440 PRK04195 replication factor C 97.0 0.016 3.5E-07 48.2 11.3 20 1-20 44-63 (482)
441 KOG0469 Elongation factor 2 [T 97.0 0.0027 5.8E-08 51.9 6.3 85 42-130 95-180 (842)
442 PF13671 AAA_33: AAA domain; P 96.9 0.0004 8.6E-09 47.6 1.5 18 1-18 4-21 (143)
443 PRK10646 ADP-binding protein; 96.9 0.0055 1.2E-07 42.6 6.8 19 1-19 33-51 (153)
444 cd02019 NK Nucleoside/nucleoti 96.9 0.00063 1.4E-08 40.6 1.7 20 1-20 4-23 (69)
445 PRK00411 cdc6 cell division co 96.8 0.0065 1.4E-07 49.1 7.6 19 1-19 60-78 (394)
446 PF00005 ABC_tran: ABC transpo 96.7 0.00072 1.6E-08 46.0 1.4 20 1-20 16-35 (137)
447 COG3640 CooC CO dehydrogenase 96.7 0.022 4.8E-07 42.2 9.1 77 45-133 134-211 (255)
448 PF05879 RHD3: Root hair defec 96.7 0.0056 1.2E-07 53.4 7.1 23 2-24 1-23 (742)
449 PRK08118 topology modulation p 96.7 0.00086 1.9E-08 47.5 1.7 19 1-19 6-24 (167)
450 COG0194 Gmk Guanylate kinase [ 96.7 0.00057 1.2E-08 48.6 0.7 20 1-20 9-28 (191)
451 COG1126 GlnQ ABC-type polar am 96.7 0.00089 1.9E-08 48.8 1.7 21 1-21 33-53 (240)
452 cd04178 Nucleostemin_like Nucl 96.7 0.0039 8.4E-08 44.4 5.0 44 70-115 1-44 (172)
453 PRK01889 GTPase RsgA; Reviewed 96.7 0.0013 2.9E-08 52.4 2.8 21 1-21 200-220 (356)
454 PRK07261 topology modulation p 96.6 0.001 2.3E-08 47.3 1.8 19 1-19 5-23 (171)
455 smart00382 AAA ATPases associa 96.6 0.0011 2.4E-08 44.7 1.9 23 1-23 7-29 (148)
456 COG0563 Adk Adenylate kinase a 96.6 0.00099 2.1E-08 47.7 1.6 19 1-19 5-23 (178)
457 COG1136 SalX ABC-type antimicr 96.6 0.001 2.3E-08 49.1 1.7 21 1-21 36-56 (226)
458 cd01131 PilT Pilus retraction 96.6 0.0088 1.9E-07 43.6 6.5 20 1-20 6-25 (198)
459 PF02367 UPF0079: Uncharacteri 96.6 0.0038 8.2E-08 41.7 4.1 18 2-19 21-38 (123)
460 PRK05416 glmZ(sRNA)-inactivati 96.6 0.021 4.5E-07 44.1 8.8 17 1-17 11-27 (288)
461 KOG2423 Nucleolar GTPase [Gene 96.6 0.00044 9.5E-09 54.7 -0.4 50 1-54 312-361 (572)
462 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0084 1.8E-07 41.9 6.1 20 1-20 30-49 (157)
463 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.044 9.4E-07 37.8 9.5 20 1-20 31-50 (144)
464 COG1120 FepC ABC-type cobalami 96.6 0.0012 2.6E-08 49.8 1.8 18 1-18 33-50 (258)
465 PLN03025 replication factor C 96.6 0.016 3.4E-07 45.6 8.2 21 1-21 39-59 (319)
466 PF11111 CENP-M: Centromere pr 96.6 0.041 8.8E-07 38.8 9.2 92 67-159 63-154 (176)
467 PRK14737 gmk guanylate kinase; 96.6 0.0013 2.8E-08 47.5 1.8 20 1-20 9-28 (186)
468 cd00071 GMPK Guanosine monopho 96.5 0.0018 4E-08 44.2 2.3 19 1-19 4-22 (137)
469 PHA02518 ParA-like protein; Pr 96.5 0.028 6E-07 41.1 8.6 67 44-113 76-145 (211)
470 cd01129 PulE-GspE PulE/GspE Th 96.5 0.016 3.5E-07 44.3 7.4 20 1-20 85-104 (264)
471 PRK10078 ribose 1,5-bisphospho 96.5 0.0016 3.4E-08 47.0 1.8 20 1-20 7-26 (186)
472 COG1161 Predicted GTPases [Gen 96.5 0.009 2E-07 47.0 6.1 94 51-153 16-112 (322)
473 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0017 3.6E-08 48.0 1.9 20 1-20 35-54 (218)
474 COG1116 TauB ABC-type nitrate/ 96.4 0.0017 3.7E-08 48.4 1.8 21 1-21 34-54 (248)
475 TIGR02322 phosphon_PhnN phosph 96.4 0.0016 3.5E-08 46.5 1.7 19 1-19 6-24 (179)
476 PRK14738 gmk guanylate kinase; 96.4 0.0015 3.3E-08 47.9 1.6 20 1-20 18-37 (206)
477 cd01130 VirB11-like_ATPase Typ 96.4 0.0092 2E-07 43.0 5.6 20 1-20 30-49 (186)
478 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0018 3.8E-08 48.7 1.8 18 1-18 35-52 (254)
479 PF13238 AAA_18: AAA domain; P 96.4 0.0016 3.5E-08 43.5 1.5 20 1-20 3-22 (129)
480 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0018 3.9E-08 46.5 1.9 18 1-18 8-25 (188)
481 cd03225 ABC_cobalt_CbiO_domain 96.4 0.0018 3.9E-08 47.6 1.9 20 1-20 32-51 (211)
482 PRK13851 type IV secretion sys 96.4 0.019 4.1E-07 45.5 7.5 20 1-20 167-186 (344)
483 TIGR01166 cbiO cobalt transpor 96.4 0.0019 4.2E-08 46.6 1.8 20 1-20 23-42 (190)
484 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0019 4.2E-08 47.3 1.8 20 1-20 31-50 (205)
485 cd00820 PEPCK_HprK Phosphoenol 96.4 0.002 4.4E-08 41.9 1.6 17 1-17 20-36 (107)
486 TIGR00960 3a0501s02 Type II (G 96.3 0.0021 4.5E-08 47.5 1.8 20 1-20 34-53 (216)
487 cd03261 ABC_Org_Solvent_Resist 96.3 0.0021 4.6E-08 48.1 1.9 20 1-20 31-50 (235)
488 cd02023 UMPK Uridine monophosp 96.3 0.002 4.4E-08 46.9 1.7 19 1-19 4-22 (198)
489 cd02025 PanK Pantothenate kina 96.3 0.0023 4.9E-08 47.5 1.9 19 1-19 4-22 (220)
490 cd03238 ABC_UvrA The excision 96.3 0.0022 4.8E-08 45.8 1.8 17 1-17 26-42 (176)
491 cd03293 ABC_NrtD_SsuB_transpor 96.3 0.0022 4.9E-08 47.5 1.9 20 1-20 35-54 (220)
492 cd03229 ABC_Class3 This class 96.3 0.0023 5E-08 45.8 1.9 19 1-19 31-49 (178)
493 PRK08727 hypothetical protein; 96.3 0.026 5.7E-07 42.2 7.6 19 1-19 46-64 (233)
494 PRK08233 hypothetical protein; 96.3 0.0023 4.9E-08 45.8 1.8 19 1-19 8-26 (182)
495 PF03205 MobB: Molybdopterin g 96.3 0.0019 4.2E-08 44.3 1.4 21 1-21 5-25 (140)
496 PF00406 ADK: Adenylate kinase 96.3 0.0021 4.5E-08 44.7 1.5 19 1-19 1-19 (151)
497 COG4559 ABC-type hemin transpo 96.3 0.0029 6.2E-08 46.2 2.2 21 1-21 32-52 (259)
498 TIGR00235 udk uridine kinase. 96.3 0.0022 4.7E-08 47.1 1.7 19 1-19 11-29 (207)
499 TIGR02673 FtsE cell division A 96.3 0.0023 5E-08 47.1 1.8 20 1-20 33-52 (214)
500 COG1117 PstB ABC-type phosphat 96.3 0.0023 4.9E-08 46.7 1.7 17 1-17 38-54 (253)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-41 Score=235.13 Aligned_cols=164 Identities=53% Similarity=0.831 Sum_probs=157.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+.|||||+|+.||.+..|...+..|+|.++..+.+.+++..+.++||||+|+++|++....|+++|+++|+|||+++
T Consensus 14 liGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~ 93 (205)
T KOG0084|consen 14 LIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK 93 (205)
T ss_pred EECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
.+||..+..|+.++.++...++|.++|+||+|+...+.++.++++.++.+++++ ++++||+++.||+++|..+...+.+
T Consensus 94 ~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 94 QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 999999999999999999889999999999999988999999999999999999 9999999999999999999988877
Q ss_pred Hhhhh
Q 040835 160 IVSKK 164 (206)
Q Consensus 160 ~~~~~ 164 (206)
+....
T Consensus 174 ~~~~~ 178 (205)
T KOG0084|consen 174 RKGLH 178 (205)
T ss_pred hcccC
Confidence 75544
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-40 Score=230.00 Aligned_cols=166 Identities=45% Similarity=0.737 Sum_probs=157.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..+||||||+.||..+.|.+...+|+|--+....+.++...++|.||||+|+++|..+.+.|+++|+++|+|||+++
T Consensus 10 LLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~ 89 (200)
T KOG0092|consen 10 LLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITD 89 (200)
T ss_pred EECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEeccc
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.+||..++.|+..+.+..++++-+.+++||+|+...+++..+++..++...|+.+||+||+++.||+++|..|.+.+...
T Consensus 90 ~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 90 EESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 99999999999999998888888999999999998899999999999999999999999999999999999999998877
Q ss_pred hhhhhc
Q 040835 161 VSKKAL 166 (206)
Q Consensus 161 ~~~~~~ 166 (206)
......
T Consensus 170 ~~~~~~ 175 (200)
T KOG0092|consen 170 DPQERQ 175 (200)
T ss_pred cccccc
Confidence 655443
No 3
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-40 Score=225.93 Aligned_cols=203 Identities=45% Similarity=0.770 Sum_probs=177.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.|||||+|+.+|+...|.+..+.|+|.++....++++++.++++||||+|++.|.+.++.|++.+-++|+|||+++
T Consensus 11 iiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~ 90 (216)
T KOG0098|consen 11 IIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR 90 (216)
T ss_pred EECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+++|..+..|+..+..+...+..+++++||+|+...+.++.+|.+.|++++|+.++++||++++||++.|......|++.
T Consensus 91 r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 91 RESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998778999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhcccCCCCCC-CCCCccccccccccCCCCCCCCCCC--cccc
Q 040835 161 VSKKALTANDESES-GGSSSLLKATNIVVPGQEPESGRRS--YNCC 203 (206)
Q Consensus 161 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 203 (206)
-.........+... -....+++..++....++-.-.++- .+||
T Consensus 171 ~q~g~~~~~~~~k~k~k~~p~~~~~~~~~~~~~~~~~~~~~s~gcc 216 (216)
T KOG0098|consen 171 IQDGVFDDINESKGKIKIGPQIRRIRVSIASSDMSGSEGGASDGCC 216 (216)
T ss_pred HHhcccccccccccceeecccccccccCcccccccccccccccCCC
Confidence 77766555444433 2345556666666655443222222 4566
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-39 Score=228.42 Aligned_cols=166 Identities=47% Similarity=0.814 Sum_probs=159.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||+|+.+|..+.+...+..|+|.++..+.+.+++..+.+++|||+|+++|..+...|++.|+++++|||+++
T Consensus 17 liGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn 96 (207)
T KOG0078|consen 17 LIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN 96 (207)
T ss_pred EECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
..+|+++..|+..+..+....+|.++|+||+|+...++++.+..++++.++|++++||||++|.||+++|..|.+.++..
T Consensus 97 e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 97 EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred hHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhhc
Q 040835 161 VSKKAL 166 (206)
Q Consensus 161 ~~~~~~ 166 (206)
......
T Consensus 177 ~~~~~~ 182 (207)
T KOG0078|consen 177 LEDAEL 182 (207)
T ss_pred cchhhh
Confidence 665533
No 5
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-39 Score=224.86 Aligned_cols=172 Identities=76% Similarity=1.135 Sum_probs=165.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||-|+.+|..+.|...+.+|+|.++....+.++++.+..+||||+|+++|+.....|++++.++++|||++.
T Consensus 19 liGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr 98 (222)
T KOG0087|consen 19 LIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITR 98 (222)
T ss_pred EeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+|+.+.+|+.+++.+...++++++|+||+||...+.+..++...+++..++.++++||.+..||.++|..++..|++.
T Consensus 99 ~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 99 RQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCC
Q 040835 161 VSKKALTANDES 172 (206)
Q Consensus 161 ~~~~~~~~~~~~ 172 (206)
..++........
T Consensus 179 vs~k~~~~~~~~ 190 (222)
T KOG0087|consen 179 VSKKQLDENNDP 190 (222)
T ss_pred HHHHhhhccccc
Confidence 999877666543
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-39 Score=221.43 Aligned_cols=161 Identities=40% Similarity=0.713 Sum_probs=151.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|..+||||||+++|+.+.|...|.+|+|.++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+|||+++
T Consensus 27 flGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~ 106 (221)
T KOG0094|consen 27 FLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD 106 (221)
T ss_pred EEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCC-CCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADK-NIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
..+|++...|+..+....+. ++-+++|+||.||...+++..++....++++++.|+++||+.|+||..+|..|...++.
T Consensus 107 ~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 107 RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred cchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 99999999999999877765 58899999999999999999999999999999999999999999999999987766655
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 187 ~~ 188 (221)
T KOG0094|consen 187 ME 188 (221)
T ss_pred cc
Confidence 53
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.3e-37 Score=223.95 Aligned_cols=160 Identities=42% Similarity=0.768 Sum_probs=147.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|..|||||||+++|..+.+...+.+|++..+....+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+++
T Consensus 5 vlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd 84 (202)
T cd04120 5 IIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 84 (202)
T ss_pred EECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999999998888998888887788888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++|+.+..|+..+......+.|+++|+||+|+...+.+..++..++++++ ++.+++|||++|.||+++|.++++.+.+
T Consensus 85 ~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 85 KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999887766567999999999999877888888899999885 7899999999999999999999988865
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 165 ~ 165 (202)
T cd04120 165 K 165 (202)
T ss_pred h
Confidence 4
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=205.30 Aligned_cols=160 Identities=51% Similarity=0.795 Sum_probs=155.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||+|+.+|..+.|...|..|+|+++..+++.+++..++++|||++|++.|..+...|+++.+++|+|||+++
T Consensus 13 IigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn 92 (198)
T KOG0079|consen 13 IIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN 92 (198)
T ss_pred eecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.++|.+.++|++.++..+ +.+|-++|+||.|....+.+..++++.++...|+.+||+|++..+|+...|..|.+.+++.
T Consensus 93 ~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 93 GESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred hhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHH
Confidence 999999999999999988 4799999999999998889999999999999999999999999999999999999999888
Q ss_pred h
Q 040835 161 V 161 (206)
Q Consensus 161 ~ 161 (206)
.
T Consensus 172 k 172 (198)
T KOG0079|consen 172 K 172 (198)
T ss_pred H
Confidence 7
No 9
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.9e-36 Score=220.66 Aligned_cols=166 Identities=37% Similarity=0.626 Sum_probs=146.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|+++.+...+.+|.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++|+|||++
T Consensus 5 ivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t 84 (201)
T cd04107 5 VIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVT 84 (201)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECC
Confidence 68999999999999999999988888988877777777777 77899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA----DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++...+ ..++++||+++.|++++|.+++
T Consensus 85 ~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 85 RPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred CHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998876432 3578999999999997656778889999999998 6899999999999999999999
Q ss_pred HHHHHHhhhhhc
Q 040835 155 TEIYRIVSKKAL 166 (206)
Q Consensus 155 ~~i~~~~~~~~~ 166 (206)
+.+.+.......
T Consensus 165 ~~l~~~~~~~~~ 176 (201)
T cd04107 165 KNILANDKNLQQ 176 (201)
T ss_pred HHHHHhchhhHh
Confidence 999876554433
No 10
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=8.5e-36 Score=220.15 Aligned_cols=165 Identities=73% Similarity=1.113 Sum_probs=150.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++++|+|||+++
T Consensus 17 ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 96 (216)
T PLN03110 17 LIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 96 (216)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++++..+.+.
T Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 97 RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998877666899999999999977777888889999998999999999999999999999999999886
Q ss_pred hhhhh
Q 040835 161 VSKKA 165 (206)
Q Consensus 161 ~~~~~ 165 (206)
...+.
T Consensus 177 ~~~~~ 181 (216)
T PLN03110 177 ISKKA 181 (216)
T ss_pred hhccc
Confidence 54433
No 11
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=202.00 Aligned_cols=160 Identities=46% Similarity=0.724 Sum_probs=152.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..|+|||+|+.+|..+.|.+..+.|+|.++..+.+.+++..+++.||||+|+++|+.+++.|++++.++|+|||++.
T Consensus 16 lIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~ 95 (209)
T KOG0080|consen 16 LIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTS 95 (209)
T ss_pred EEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++|..+..|+.++.-++ ++++-.++|+||+|.+.++.++.++...+++++++.|+|+||++.+||...|+.++..|++
T Consensus 96 Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 96 RDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred hhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhc
Confidence 999999999999998776 5678889999999999889999999999999999999999999999999999999999887
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 176 t 176 (209)
T KOG0080|consen 176 T 176 (209)
T ss_pred C
Confidence 5
No 12
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-36 Score=202.92 Aligned_cols=179 Identities=41% Similarity=0.703 Sum_probs=163.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|+.-+|||+|++.|+.+.+..-++||+|.+++...+.+ ++..+++++|||+|+++|++++..|+++.-++++|||++
T Consensus 13 vigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvydit 92 (213)
T KOG0091|consen 13 VIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDIT 92 (213)
T ss_pred EEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEecc
Confidence 5899999999999999999999999999999998887766 577899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
|+++|+++..|+.+...+.+ ..+-+.+|++|+|+...+++..++++.++..+|+.++|||++++.||++.|..+.+.+
T Consensus 93 nr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 93 NRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHH
Confidence 99999999999988765543 3455788999999999899999999999999999999999999999999999999999
Q ss_pred HHHhhhhhcccCCCCCCCCCCc
Q 040835 158 YRIVSKKALTANDESESGGSSS 179 (206)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~ 179 (206)
+....+-.+..+++-..-.+|.
T Consensus 173 f~~i~qGeik~edgw~gvKSsr 194 (213)
T KOG0091|consen 173 FQAIQQGEIKLEDGWGGVKSSR 194 (213)
T ss_pred HHHHhcCceeeeeccccccccC
Confidence 9999988888887776666643
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.5e-35 Score=212.07 Aligned_cols=159 Identities=38% Similarity=0.667 Sum_probs=146.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|..|||||||+.+|..+.+...+.++.+..+....+.+++..+.+.+|||+|++.|..++..+++.+|++|+|||+++
T Consensus 11 viG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~ 90 (189)
T cd04121 11 LVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN 90 (189)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999998888777787777777777888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+|+.+..|+..+.... .+.|++||+||.|+...+.+..++++.+++..++++++|||+++.||+++|.++++.+...
T Consensus 91 ~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 91 RWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999997765 5799999999999987778889999999999999999999999999999999999877654
No 14
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.1e-34 Score=213.46 Aligned_cols=203 Identities=41% Similarity=0.696 Sum_probs=169.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..+++++|++|+|||++
T Consensus 7 vvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~ 86 (211)
T cd04111 7 VIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDIT 86 (211)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECC
Confidence 5899999999999999999998888888887777766666 456789999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++++++.+..|+..+..... ...|+++|+||+|+...+.+..++...+++.++++++++||+++.|++++|++|.+.+.
T Consensus 87 ~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 87 NRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998876543 45788999999999776778888899999999999999999999999999999999998
Q ss_pred HHhhhhhcccCCCCCCCCCCccccccccccCCCCCCCCCCCccccC
Q 040835 159 RIVSKKALTANDESESGGSSSLLKATNIVVPGQEPESGRRSYNCCT 204 (206)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
+............. .++...-+++-++....+-|-=.--...|||
T Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T cd04111 167 ERIKRGELCALDGW-DGVKSGFPAGRAFSLEERSPTFASPEKSCCC 211 (211)
T ss_pred HHhhcCCCCccccc-cccccCCCcccccccCcccccccCCCCCCCC
Confidence 88665544444444 5555556666688877776654444445776
No 15
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.8e-35 Score=214.98 Aligned_cols=186 Identities=23% Similarity=0.380 Sum_probs=156.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+.|||||+|+++|..+.+...+.||++..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++
T Consensus 18 vvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~ 96 (232)
T cd04174 18 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 96 (232)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC
Confidence 5899999999999999999999999999876654 457778889999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEeccCCCC-C
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET------------LRAVPTEDAKEFAEKEGL-CFMETSALEST-N 145 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~ 145 (206)
+++|+.+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++.++++.+++ .|++|||++++ |
T Consensus 97 ~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~ 175 (232)
T cd04174 97 PETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKS 175 (232)
T ss_pred hHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcC
Confidence 9999974 88999988765 4789999999999853 256888999999999998 69999999997 8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccccc
Q 040835 146 VELAFLTVLTEIYRIVSKKALTANDESESGGSSSLLKATNIVV 188 (206)
Q Consensus 146 v~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (206)
|+++|..++..+++............+..+-..+.|-...+..
T Consensus 176 V~e~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (232)
T cd04174 176 IHSIFRSASLLCLNKLSPPIKKSPVRSLSKRLLHLPSRSELIS 218 (232)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccCCCcccccc
Confidence 9999999999888765554444444444444555555555554
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.8e-35 Score=211.60 Aligned_cols=162 Identities=33% Similarity=0.517 Sum_probs=140.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..++..+++.+|++|+|||+++
T Consensus 4 ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 82 (190)
T cd04144 4 VLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS 82 (190)
T ss_pred EECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC
Confidence 589999999999999999998887878766443 3455677888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA---DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
.++++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...++..++++++++||+++.|++++|.++++.+
T Consensus 83 ~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 83 RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999999988876543 25789999999999976677788888888888899999999999999999999999887
Q ss_pred HHHhhh
Q 040835 158 YRIVSK 163 (206)
Q Consensus 158 ~~~~~~ 163 (206)
..+...
T Consensus 163 ~~~~~~ 168 (190)
T cd04144 163 RQQRQG 168 (190)
T ss_pred HHhhcc
Confidence 655433
No 17
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-35 Score=196.42 Aligned_cols=169 Identities=48% Similarity=0.767 Sum_probs=161.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.|+|||+|+.+|..+.+......|+|.++....+.+.++.++++||||+|+++|++..+.|++++-+.++|||+++
T Consensus 14 ~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts 93 (214)
T KOG0086|consen 14 VIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 93 (214)
T ss_pred EeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+++|+.+..|+...+.+..+++-+++++||.|+.+.+++...++..++++..+.++++|+++|+||.+.|-...+.|+..
T Consensus 94 rdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 94 RDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred hhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhcccC
Q 040835 161 VSKKALTAN 169 (206)
Q Consensus 161 ~~~~~~~~~ 169 (206)
-+..++.++
T Consensus 174 IE~GElDPe 182 (214)
T KOG0086|consen 174 IESGELDPE 182 (214)
T ss_pred HhhcCCCHH
Confidence 777666554
No 18
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.8e-34 Score=209.74 Aligned_cols=163 Identities=48% Similarity=0.752 Sum_probs=145.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.+|.+.++....+.+++..+.+.+||+||++.+..++..+++.++++|+|||+++
T Consensus 11 vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~ 90 (199)
T cd04110 11 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN 90 (199)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC
Confidence 68999999999999999999888888888877777777777888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
++++..+..|+..+.... ...|++||+||+|+.....+..++...++...+.++|++|++++.||+++|+++.+.++..
T Consensus 91 ~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 91 GESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999887655 5689999999999976666778888889988899999999999999999999999999766
Q ss_pred hhhh
Q 040835 161 VSKK 164 (206)
Q Consensus 161 ~~~~ 164 (206)
....
T Consensus 170 ~~~~ 173 (199)
T cd04110 170 KKDN 173 (199)
T ss_pred hhcc
Confidence 4433
No 19
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.4e-34 Score=213.76 Aligned_cols=160 Identities=36% Similarity=0.585 Sum_probs=143.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH-KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|.+..+...+.+|.+.++....+.+++ ..+.+.||||+|++.+..++..+++.+|++|+|||++
T Consensus 5 ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t 84 (215)
T cd04109 5 VLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVT 84 (215)
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECC
Confidence 589999999999999999999888899988888777777754 5789999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD---KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++++++.+..|+..+..... .+.|+++|+||+|+...+.+..++...++..++++++++||++|+|++++|+++.+.
T Consensus 85 ~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 85 NSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred CHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999998876542 356899999999997667788888999999999999999999999999999999998
Q ss_pred HHHH
Q 040835 157 IYRI 160 (206)
Q Consensus 157 i~~~ 160 (206)
+...
T Consensus 165 l~~~ 168 (215)
T cd04109 165 LLGV 168 (215)
T ss_pred HHhc
Confidence 8764
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=195.72 Aligned_cols=165 Identities=42% Similarity=0.741 Sum_probs=157.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|...+|||+|+.++++..+.+.+..|.|..+..+++......+.++||||.|+++|..++..++++++++|++||++|
T Consensus 26 iiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN 105 (193)
T KOG0093|consen 26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 105 (193)
T ss_pred EEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC
Confidence 58999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.++|..+..|...+..++..+.|+++++||||++.++.++.+..+.++.++|..+||+||+.+.||..+|..++..|-+.
T Consensus 106 eeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 106 EESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999998877
Q ss_pred hhhhh
Q 040835 161 VSKKA 165 (206)
Q Consensus 161 ~~~~~ 165 (206)
...+.
T Consensus 186 msesl 190 (193)
T KOG0093|consen 186 MSESL 190 (193)
T ss_pred hhhhh
Confidence 66543
No 21
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=4e-34 Score=203.36 Aligned_cols=159 Identities=50% Similarity=0.868 Sum_probs=145.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|||+++
T Consensus 7 iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 86 (166)
T cd04122 7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 86 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 58999999999999999999988888888888877777788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++++.+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|.++.+.+++
T Consensus 87 ~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 87 RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 9999999999998877665678999999999998777788889999999999999999999999999999999988764
No 22
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.9e-34 Score=206.16 Aligned_cols=160 Identities=48% Similarity=0.780 Sum_probs=142.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|+|++
T Consensus 5 vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 5 LLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC
Confidence 58999999999999999988854 56677676776666778888899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++++.+..|+..+......+.|+++++||+|+...+.+..++...++..++.+++++||+++.|++++|.++.+.+..
T Consensus 85 ~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 85 NKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887765679999999999997667777788889999999999999999999999999999988865
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 165 ~ 165 (191)
T cd04112 165 R 165 (191)
T ss_pred h
Confidence 5
No 23
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6.6e-34 Score=209.55 Aligned_cols=184 Identities=23% Similarity=0.392 Sum_probs=149.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||+|+++|..+.+...+.||++..+. ..+.+++..+.+.||||+|++.|..+++.+++.+|++|+|||+++
T Consensus 6 vvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~ 84 (222)
T cd04173 6 VVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR 84 (222)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC
Confidence 6899999999999999999999889999876554 566788889999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCC-
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTN- 145 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~- 145 (206)
+++|+.+ ..|...+.... .+.|+++|+||+|+... ..+..++...+++++++ +|+||||+++++
T Consensus 85 ~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~ 163 (222)
T cd04173 85 PETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERS 163 (222)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcC
Confidence 9999998 46877665544 57999999999998542 13677889999999995 899999999885
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCcccccccc
Q 040835 146 VELAFLTVLTEIYRIVSKKALTANDESESGGSSSLLKATNI 186 (206)
Q Consensus 146 v~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (206)
|+++|..++...+.............+..+..+.++.++.+
T Consensus 164 V~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (222)
T cd04173 164 VRDVFHVATVASLGRGHRQLRRTDSRRGLQRSAQLSGRPDR 204 (222)
T ss_pred HHHHHHHHHHHHHhccCCccccccccccccccccCCCcccc
Confidence 99999999998776554333333344444444455554333
No 24
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-33 Score=204.56 Aligned_cols=161 Identities=48% Similarity=0.776 Sum_probs=146.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..+++.+|++|+|||+++
T Consensus 5 v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~ 84 (188)
T cd04125 5 IIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD 84 (188)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC
Confidence 58999999999999999999987788888877777777888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
++++..+..|+..+........|+++++||+|+...+.+..++...++...+++++++||+++.|++++|.++++.+.+.
T Consensus 85 ~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 85 QESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998876656789999999999987677788888889888899999999999999999999999998765
Q ss_pred h
Q 040835 161 V 161 (206)
Q Consensus 161 ~ 161 (206)
.
T Consensus 165 ~ 165 (188)
T cd04125 165 L 165 (188)
T ss_pred h
Confidence 3
No 25
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5e-34 Score=206.89 Aligned_cols=159 Identities=36% Similarity=0.571 Sum_probs=140.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++
T Consensus 10 iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~ 88 (189)
T PTZ00369 10 VVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS 88 (189)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC
Confidence 589999999999999999998888888876555 4566778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...++..++++++++||+++.|++++|.++++.+.+
T Consensus 89 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 89 RSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999998886654 3578999999999997666677777888888888999999999999999999999988865
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 169 ~ 169 (189)
T PTZ00369 169 Y 169 (189)
T ss_pred H
Confidence 4
No 26
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.7e-34 Score=208.80 Aligned_cols=161 Identities=33% Similarity=0.520 Sum_probs=138.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|+.+.+.. ..++++..+.... ...+.+.||||+|++.|..++..+++.+|++|+|||+++
T Consensus 5 ivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 5 LLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQ----WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred EECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEE----eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999864 5667665554332 246789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-------------------CCCCCHHHHHHHHHHcC---------
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET-------------------LRAVPTEDAKEFAEKEG--------- 132 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~--------- 132 (206)
+++|..+..|+..+......+.|+++|+||+|+.. .+.+..+++..++++++
T Consensus 80 ~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 80 VQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 99999998887777665556799999999999864 46788899999999876
Q ss_pred -----CeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhhc
Q 040835 133 -----LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166 (206)
Q Consensus 133 -----~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~~~~~ 166 (206)
++|++|||++|.||+++|..+++.++....++..
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999999877666654
No 27
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=206.01 Aligned_cols=164 Identities=51% Similarity=0.866 Sum_probs=148.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|+...+.+.+.++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|+|+++
T Consensus 11 ivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~ 90 (210)
T PLN03108 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 90 (210)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999999988888888888877778888888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
++++..+..|+..+........|+++++||+|+...+.+..++...+++.++++++++||+++.|++++|.++++.+++.
T Consensus 91 ~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 91 RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999887766556799999999999987677888899999999999999999999999999999999999876
Q ss_pred hhhh
Q 040835 161 VSKK 164 (206)
Q Consensus 161 ~~~~ 164 (206)
....
T Consensus 171 ~~~~ 174 (210)
T PLN03108 171 IQDG 174 (210)
T ss_pred hhhc
Confidence 5433
No 28
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-35 Score=194.04 Aligned_cols=168 Identities=42% Similarity=0.718 Sum_probs=157.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..|+|||+|+++|..+-|++..-.|+|.++..+++.+++..++++||||+|+++|++.+..|++.++++|++||++.
T Consensus 12 lvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydisc 91 (213)
T KOG0095|consen 12 LVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC 91 (213)
T ss_pred EEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.++|+-+.+|+.++..+.+..+..++|+||.|+.+.++++.+..++++......++++||++.+|++.+|..+.-.+...
T Consensus 92 qpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 92 QPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLISE 171 (213)
T ss_pred CcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999999999998889999999999999888999999999999999999998887766
Q ss_pred hhhhhccc
Q 040835 161 VSKKALTA 168 (206)
Q Consensus 161 ~~~~~~~~ 168 (206)
...+....
T Consensus 172 ar~~d~v~ 179 (213)
T KOG0095|consen 172 ARQNDLVN 179 (213)
T ss_pred HHhccchh
Confidence 65554433
No 29
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=7.5e-34 Score=204.13 Aligned_cols=156 Identities=30% Similarity=0.526 Sum_probs=140.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.|||||||+++|..+.+...+.||.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++
T Consensus 10 vvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~ 88 (182)
T cd04172 10 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 88 (182)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC
Confidence 589999999999999999999988888877554 4567788889999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEeccCCCCC-
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET------------LRAVPTEDAKEFAEKEGL-CFMETSALESTN- 145 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~- 145 (206)
+.+|+.+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++.++++++++ +|+||||++++|
T Consensus 89 ~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~ 167 (182)
T cd04172 89 PETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 167 (182)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCC
Confidence 9999997 78999988765 5799999999999853 246889999999999995 899999999998
Q ss_pred HHHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEIY 158 (206)
Q Consensus 146 v~~~~~~l~~~i~ 158 (206)
|+++|..+++.++
T Consensus 168 v~~~F~~~~~~~~ 180 (182)
T cd04172 168 VRDIFHVATLACV 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
No 30
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=198.52 Aligned_cols=163 Identities=37% Similarity=0.655 Sum_probs=151.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||+|++++.+..|...+..|+|..+-.+.+.+++..+.++||||+|+++|.++.-.+++++|.++++||+++
T Consensus 14 iLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~ 93 (210)
T KOG0394|consen 14 ILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNN 93 (210)
T ss_pred EeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCc--CCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLET--LRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
+.+|+.+..|+.++..... ...|+||++||+|+.. .+.++...+..|+... ++||||+||+...||.++|..+
T Consensus 94 ~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~i 173 (210)
T KOG0394|consen 94 PKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEI 173 (210)
T ss_pred hhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHH
Confidence 9999999999999877663 4579999999999964 3788999999999987 5899999999999999999999
Q ss_pred HHHHHHHhhh
Q 040835 154 LTEIYRIVSK 163 (206)
Q Consensus 154 ~~~i~~~~~~ 163 (206)
.+.++.....
T Consensus 174 a~~aL~~E~~ 183 (210)
T KOG0394|consen 174 ARRALANEDR 183 (210)
T ss_pred HHHHHhccch
Confidence 9999887654
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.7e-33 Score=201.07 Aligned_cols=159 Identities=31% Similarity=0.467 Sum_probs=141.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++
T Consensus 7 vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~ 85 (172)
T cd04141 7 MLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD 85 (172)
T ss_pred EECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc
Confidence 589999999999999999999888888876444 4456778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.... ..++|+++|+||+|+...+.++.++...+++..++++++|||+++.||+++|.++++.+.+
T Consensus 86 ~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 86 RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999998888776643 3579999999999997767788889999999999999999999999999999999988776
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 166 ~ 166 (172)
T cd04141 166 K 166 (172)
T ss_pred h
Confidence 4
No 32
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.7e-34 Score=202.40 Aligned_cols=156 Identities=32% Similarity=0.563 Sum_probs=139.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|+|||+|+.+|..+.+...+.+|.+..+ ...+.+++..+.+.||||+|+++|..++..+++++|++|+|||+++
T Consensus 6 v~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~ 84 (176)
T cd04133 6 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS 84 (176)
T ss_pred EECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC
Confidence 589999999999999999999888999987655 4456778888999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCC----------CCCHHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLR----------AVPTEDAKEFAEKEGL-CFMETSALESTNVEL 148 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 148 (206)
+++|+.+ ..|+..+.... .+.|+++|+||+|+.+.+ .+..+++..+++..++ .++||||+++.||++
T Consensus 85 ~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~ 163 (176)
T cd04133 85 RASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKA 163 (176)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHH
Confidence 9999998 68999987665 479999999999996432 4788899999999998 599999999999999
Q ss_pred HHHHHHHHHH
Q 040835 149 AFLTVLTEIY 158 (206)
Q Consensus 149 ~~~~l~~~i~ 158 (206)
+|..+++.++
T Consensus 164 ~F~~~~~~~~ 173 (176)
T cd04133 164 VFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 33
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.8e-33 Score=199.16 Aligned_cols=159 Identities=49% Similarity=0.845 Sum_probs=145.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++|+|+|+++
T Consensus 8 vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~ 87 (167)
T cd01867 8 LIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87 (167)
T ss_pred EECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC
Confidence 58999999999999999999999889998887777777788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+......+.|+++++||+|+...+.+..+++..++..++.+++++||+++.|++++|.++.+.+..
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 88 EKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999887665679999999999997666777888889999999999999999999999999999998864
No 34
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.5e-33 Score=198.32 Aligned_cols=159 Identities=44% Similarity=0.758 Sum_probs=143.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++|+|+++
T Consensus 6 i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~ 85 (165)
T cd01865 6 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 85 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC
Confidence 58999999999999999999988888888877766667777778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++++.+..|+..+........|+++|+||+|+...+....++..+++...+++++++||+++.|++++|++++..+.+
T Consensus 86 ~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 86 EESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999877665678999999999997767777788888888889999999999999999999999987653
No 35
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=194.41 Aligned_cols=167 Identities=38% Similarity=0.670 Sum_probs=154.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..=+|||+|+-+++.+.|......|.--.+..+.+.+.+....++||||+|+++|..+-+.|+++.+++++|||++|
T Consensus 18 LLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD 97 (218)
T KOG0088|consen 18 LLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD 97 (218)
T ss_pred EEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc
Confidence 46888899999999999999988877776667777788888889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+++|..++.|..+++...+..+-++||+||+|++.++.+..++++.+++.-|+.++++||+++.||.++|..+...++++
T Consensus 98 rdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 98 RDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred hHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhcc
Q 040835 161 VSKKALT 167 (206)
Q Consensus 161 ~~~~~~~ 167 (206)
.......
T Consensus 178 ~s~~qr~ 184 (218)
T KOG0088|consen 178 SSQRQRT 184 (218)
T ss_pred hhhcccc
Confidence 7655433
No 36
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.7e-33 Score=197.40 Aligned_cols=156 Identities=42% Similarity=0.723 Sum_probs=142.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||||+++|+.+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++|||+++
T Consensus 5 vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04117 5 LIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS 84 (161)
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC
Confidence 58999999999999999999988888888877777777788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+++++.+..|+..+......+.|+++|+||.|+...+.+..++...+++.++.+++++||+++.|++++|.+|.+.
T Consensus 85 ~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 85 ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999998877665579999999999997767788889999999999999999999999999999999864
No 37
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-33 Score=200.79 Aligned_cols=156 Identities=28% Similarity=0.497 Sum_probs=138.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|..+.+...+.||.+..+ ...+.+++..+.+.+|||+|++.|..+++.+++++|++|+|||+++
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~ 84 (178)
T cd04131 6 VVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR 84 (178)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC
Confidence 589999999999999999999888888876554 3567788889999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEeccCCCCC-
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET------------LRAVPTEDAKEFAEKEGL-CFMETSALESTN- 145 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~- 145 (206)
+++|+.+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++.++++++++ ++++|||+++++
T Consensus 85 ~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~ 163 (178)
T cd04131 85 PETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKS 163 (178)
T ss_pred hhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcC
Confidence 9999996 78999988765 5799999999999853 245788999999999997 799999999995
Q ss_pred HHHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEIY 158 (206)
Q Consensus 146 v~~~~~~l~~~i~ 158 (206)
|+++|..+++..+
T Consensus 164 v~~~F~~~~~~~~ 176 (178)
T cd04131 164 VRDIFHVATMACL 176 (178)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
No 38
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.5e-33 Score=197.47 Aligned_cols=158 Identities=33% Similarity=0.651 Sum_probs=143.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|+|+++
T Consensus 5 ~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~ 84 (168)
T cd04119 5 SMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD 84 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999988889998888877788888889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-----KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
++++..+..|+..+..... .+.|+++|+||+|+...+....++...++...+++++++||+++.|++++|+++++
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 85 RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999998876553 46899999999999755667788888888888999999999999999999999998
Q ss_pred HHH
Q 040835 156 EIY 158 (206)
Q Consensus 156 ~i~ 158 (206)
.++
T Consensus 165 ~l~ 167 (168)
T cd04119 165 SIV 167 (168)
T ss_pred HHh
Confidence 875
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.6e-33 Score=196.44 Aligned_cols=158 Identities=53% Similarity=0.845 Sum_probs=144.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 7 i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 7 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC
Confidence 58999999999999999999888888887877777777788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++++..+..|+..+......+.|+++++||+|+...+.+..++...++...+++++++||+++.|++++|.++.+.+.
T Consensus 87 ~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 87 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999987766567899999999999776777888899999999999999999999999999999998775
No 40
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=6.1e-33 Score=196.39 Aligned_cols=158 Identities=39% Similarity=0.698 Sum_probs=149.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||++|++.+..++..+++.+|++|+|||+++
T Consensus 4 vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~ 83 (162)
T PF00071_consen 4 VVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD 83 (162)
T ss_dssp EEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB
T ss_pred EECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999998889998999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+++++.+..|+..+........|++|++||.|+...+.+..+++..++.+++.+++++|++++.||.++|..+++.++
T Consensus 84 ~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 84 EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999998887667999999999999877899999999999999999999999999999999999999875
No 41
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.8e-33 Score=200.85 Aligned_cols=157 Identities=27% Similarity=0.499 Sum_probs=137.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+.|||||||+.+|..+.+...+.||.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|||+++
T Consensus 8 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~ 86 (191)
T cd01875 8 VVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS 86 (191)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC
Confidence 589999999999999999999888888877554 3445678888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEG-LCFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 146 (206)
+.+|+.+. .|+..+.... .++|+++|+||.|+... +.+..++...++..++ ++++++||++++||
T Consensus 87 ~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v 165 (191)
T cd01875 87 PSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGV 165 (191)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCH
Confidence 99999996 5888776654 57999999999999543 2356778889999988 58999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|.++++.+..
T Consensus 166 ~e~f~~l~~~~~~ 178 (191)
T cd01875 166 KEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987754
No 42
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.5e-32 Score=199.77 Aligned_cols=156 Identities=31% Similarity=0.549 Sum_probs=139.5
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCCh
Q 040835 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKR 81 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 81 (206)
+|..|||||||+++|+.+.+...+.+|++.++....+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999988888889988888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 82 QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 82 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.++..+..|+..+.... .++|+++|+||+|+.. +.+..+. ..++...++.+++|||++++||+++|.++++.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 5799999999999854 3444444 467778889999999999999999999999988653
No 43
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=181.94 Aligned_cols=188 Identities=47% Similarity=0.762 Sum_probs=166.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+-|+|||+|+..|....|...-+.+++..+....+.+.+..++++||||+|+++|+...+.|++++-+.++|||++.
T Consensus 16 iigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditr 95 (215)
T KOG0097|consen 16 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 95 (215)
T ss_pred EEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++.++..|+...+.+.+++..+++++||.|++..+.+..++...++++.|+.++++|+++|.||.+.|-.....+++.
T Consensus 96 rstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 96 RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred hhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence 99999999999999998888999999999999999899999999999999999999999999999999999999999888
Q ss_pred hhhhhcccC-CCCCCCCCCcccccccccc
Q 040835 161 VSKKALTAN-DESESGGSSSLLKATNIVV 188 (206)
Q Consensus 161 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 188 (206)
-.......+ -++..+-.-..|+++.+..
T Consensus 176 iqdgsldlnaaesgvq~k~~~p~~~~l~s 204 (215)
T KOG0097|consen 176 IQDGSLDLNAAESGVQHKPSQPSRTSLSS 204 (215)
T ss_pred hhcCcccccchhccCcCCCCCCCcccccc
Confidence 766554333 2333333333344444443
No 44
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.9e-32 Score=197.11 Aligned_cols=160 Identities=42% Similarity=0.713 Sum_probs=141.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------CeEEEEEEEeCCCchhhhhhhHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH----------HKNVKAQIWDTAGQERYRAVTSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 70 (206)
++|++|||||||+++|....+...+.++.+.++....+.+. +..+.+.+||++|++.+...+..+++++|
T Consensus 9 ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 88 (180)
T cd04127 9 ALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAM 88 (180)
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCC
Confidence 58999999999999999999988888888877766555543 35688999999999999999999999999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++
T Consensus 89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l 168 (180)
T cd04127 89 GFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKA 168 (180)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999887653 357899999999999776778888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 150 FLTVLTEIYRI 160 (206)
Q Consensus 150 ~~~l~~~i~~~ 160 (206)
|+++++.++++
T Consensus 169 ~~~l~~~~~~~ 179 (180)
T cd04127 169 VERLLDLVMKR 179 (180)
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 45
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.7e-32 Score=194.28 Aligned_cols=159 Identities=52% Similarity=0.885 Sum_probs=144.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|.+..+...+.++.+.+.....+..++....+.+||++|++++..++..+++.+|++++|+|+++
T Consensus 9 vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~ 88 (168)
T cd01866 9 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 88 (168)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999888888888888877778888888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+......+.|+++|+||.|+...+.+..++...++...+++++++||++++|++++|.++.+.+++
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 89 RETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999998877655679999999999997666778888899999999999999999999999999999988764
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.6e-32 Score=197.53 Aligned_cols=159 Identities=28% Similarity=0.534 Sum_probs=139.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..|||||||+++|+.+.+...+.+|.+.++....+.+++..+.+.+||++|++.|..++..+++++|++++|||+++
T Consensus 5 vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~ 84 (182)
T cd04128 5 LLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR 84 (182)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC
Confidence 58999999999999999999988899998888877788888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-----CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET-----LRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
++++..+..|+..+........| ++|+||+|+.. .+....++...+++..+++++++||+++.|++++|.++++
T Consensus 85 ~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 85 KSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999988776545567 57899999842 1112245677888888999999999999999999999999
Q ss_pred HHHHH
Q 040835 156 EIYRI 160 (206)
Q Consensus 156 ~i~~~ 160 (206)
.++..
T Consensus 164 ~l~~~ 168 (182)
T cd04128 164 KAFDL 168 (182)
T ss_pred HHHhc
Confidence 88753
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.5e-32 Score=193.88 Aligned_cols=157 Identities=75% Similarity=1.147 Sum_probs=143.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|+|+|+++
T Consensus 8 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (165)
T cd01868 8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 87 (165)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC
Confidence 58999999999999999999988888888888888888888888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.++..+..|+..+......++|+++|+||.|+...+....++...++...+++++++||+++.|++++|++++..+
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 88 KQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999998877655799999999999977677778888889888899999999999999999999998775
No 48
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.3e-32 Score=197.05 Aligned_cols=162 Identities=31% Similarity=0.483 Sum_probs=137.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||+|++.+..++..+++.+|++|+|||++
T Consensus 5 vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~ 83 (187)
T cd04132 5 VVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD 83 (187)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC
Confidence 68999999999999999999988887776655443 34444 66789999999999999999999999999999999999
Q ss_pred ChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC----CCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHH
Q 040835 80 KRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL----RAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFLTV 153 (206)
Q Consensus 80 ~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l 153 (206)
++++++.+. .|+..+.... .+.|+++|+||.|+... +.+..++..+++..+++ +++++||+++.|++++|..+
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 162 (187)
T cd04132 84 NPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTA 162 (187)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHH
Confidence 999999885 5887776543 57999999999998542 34667888999999988 89999999999999999999
Q ss_pred HHHHHHHhhhh
Q 040835 154 LTEIYRIVSKK 164 (206)
Q Consensus 154 ~~~i~~~~~~~ 164 (206)
++.++....+.
T Consensus 163 ~~~~~~~~~~~ 173 (187)
T cd04132 163 IEEALKKEGKA 173 (187)
T ss_pred HHHHHhhhhhh
Confidence 99988664443
No 49
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=9.5e-32 Score=195.60 Aligned_cols=160 Identities=36% Similarity=0.622 Sum_probs=139.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++
T Consensus 5 vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~ 84 (193)
T cd04118 5 MLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT 84 (193)
T ss_pred EECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC
Confidence 68999999999999999998874 57777777776777888888899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc----CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET----LRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+.++++.+..|+..+.... .+.|+++|+||+|+.. .+.+..+++..++..++++++++||+++.|++++|+++.+
T Consensus 85 ~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 163 (193)
T cd04118 85 DSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAE 163 (193)
T ss_pred CHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999998887654 4799999999999843 2345566778888888999999999999999999999998
Q ss_pred HHHHHh
Q 040835 156 EIYRIV 161 (206)
Q Consensus 156 ~i~~~~ 161 (206)
.+.+..
T Consensus 164 ~~~~~~ 169 (193)
T cd04118 164 DFVSRA 169 (193)
T ss_pred HHHHhc
Confidence 887543
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-32 Score=193.41 Aligned_cols=156 Identities=33% Similarity=0.506 Sum_probs=136.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|..+.+...+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus 6 i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 84 (163)
T cd04136 6 VLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS 84 (163)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC
Confidence 589999999999999999988877777765 3445566778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...+++.++.+++++||+++.|++++|.++++.+
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 85 QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999999998887654 35799999999999976566777778888888889999999999999999999998754
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=5.3e-32 Score=191.44 Aligned_cols=156 Identities=54% Similarity=0.858 Sum_probs=142.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 5 v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04113 5 IIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN 84 (161)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 68999999999999999999988888887877777777888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++++..+..|+..+......+.|+++++||+|+...+.+..++...++...++.++++||+++.|++++|+++.+.
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 85 RTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999998877666789999999999997767778888999999999999999999999999999999875
No 52
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4.1e-32 Score=194.44 Aligned_cols=155 Identities=25% Similarity=0.446 Sum_probs=134.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|||+++
T Consensus 6 vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~ 84 (175)
T cd01874 6 VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 84 (175)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC
Confidence 5899999999999999999998888888765553 355677888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEG-LCFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 146 (206)
+++++.+. .|+..+.... .++|+++|+||+|+... +.+..+++..++++.+ ..++++||++|.|+
T Consensus 85 ~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v 163 (175)
T cd01874 85 PSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGL 163 (175)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCH
Confidence 99999996 5988887654 57999999999998542 4567788888988887 68999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 147 ELAFLTVLTEI 157 (206)
Q Consensus 147 ~~~~~~l~~~i 157 (206)
+++|+.++..+
T Consensus 164 ~~~f~~~~~~~ 174 (175)
T cd01874 164 KNVFDEAILAA 174 (175)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 53
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.2e-31 Score=191.25 Aligned_cols=159 Identities=35% Similarity=0.629 Sum_probs=139.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||+++|..+.+...+.++.+..+....+.+++..+.+.+|||+|++.|..++..+++.+|++++|||+++
T Consensus 5 ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 84 (170)
T cd04108 5 VVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD 84 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999999998999998888877778888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++++..+..|+..+.... ....|+++|+||+|+...+. ...+++..++.+++.+++++||+++.|++++|..+++.+
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 85 VASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999999999999875543 34578999999999854333 345667788888889999999999999999999999887
Q ss_pred HH
Q 040835 158 YR 159 (206)
Q Consensus 158 ~~ 159 (206)
.+
T Consensus 165 ~~ 166 (170)
T cd04108 165 FE 166 (170)
T ss_pred HH
Confidence 64
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.9e-32 Score=200.36 Aligned_cols=157 Identities=31% Similarity=0.552 Sum_probs=139.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.|..++..+++.+|++|+|||+++
T Consensus 18 vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~ 97 (219)
T PLN03071 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97 (219)
T ss_pred EECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC
Confidence 58999999999999999999988889998888887777777778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
++++..+..|+..+.... .+.|+++|+||+|+.. +.+..++. .++...++++|++||+++.|++++|.++++.+.+.
T Consensus 98 ~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 98 RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999988765 5799999999999864 34444444 67777889999999999999999999999988654
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.3e-32 Score=190.84 Aligned_cols=155 Identities=35% Similarity=0.637 Sum_probs=139.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC--CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH--HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 78 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 78 (206)
|+|.+|+|||||+++|+.+.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~ 84 (162)
T cd04106 5 VVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFST 84 (162)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEEC
Confidence 58999999999999999999888888887777766666666 6778999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 79 TKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 79 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++++++..+..|+..+.... .+.|+++++||+|+...+.+..++...++...+++++++|++++.|++++|.++...
T Consensus 85 ~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 85 TDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999998887654 579999999999997767778888899999999999999999999999999998754
No 56
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.1e-31 Score=190.55 Aligned_cols=156 Identities=53% Similarity=0.829 Sum_probs=139.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++++|||+++
T Consensus 8 vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~ 87 (165)
T cd01864 8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR 87 (165)
T ss_pred EECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC
Confidence 58999999999999999998888888887777777777778877899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++++..+..|+..+......+.|+++|+||+|+...+.....++..+++..+. .++++||+++.|++++|.++.+.
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 88 RSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999998776556799999999999977667777888899988875 68999999999999999999865
No 57
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.6e-31 Score=189.40 Aligned_cols=159 Identities=62% Similarity=0.951 Sum_probs=143.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 5 v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (164)
T smart00175 5 LIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN 84 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 58999999999999999999888888887877777777888888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.+++.+..|+..+......++|+++++||+|+...+.+..+.+..++...+++++++|+.++.|++++|+++.+.+.+
T Consensus 85 ~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 85 RESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999998877665689999999999997666777888888999889999999999999999999999988754
No 58
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1e-31 Score=190.59 Aligned_cols=156 Identities=31% Similarity=0.514 Sum_probs=136.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 6 ~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (164)
T cd04175 6 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA 84 (164)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999888777777766544 3566777788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..+++.+..|+..+.... ..+.|+++++||+|+...+.+..++...+++..+++++++||+++.|++++|.++.+.+
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 85 QSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 999999999988886543 36799999999999976666677778888888899999999999999999999998765
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.4e-31 Score=189.70 Aligned_cols=156 Identities=30% Similarity=0.501 Sum_probs=136.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||++++..+.+...+.++.+ ......+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+++
T Consensus 6 i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~ 84 (163)
T cd04176 6 VLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN 84 (163)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999999888777754 4555667778888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++++..+..|+..+.... ..++|+++++||+|+.....+...+...++..++++++++||+++.|++++|.++.+.+
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 85 QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 999999999988887653 35799999999999976566666777888888889999999999999999999998654
No 60
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-33 Score=185.23 Aligned_cols=164 Identities=41% Similarity=0.692 Sum_probs=149.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC---------CeEEEEEEEeCCCchhhhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH---------HKNVKAQIWDTAGQERYRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 71 (206)
.+|+.|+|||+|+.++..+.|......|+|+++..+.+.++ +..+.+++|||+|+++|++++..++++|=+
T Consensus 14 aLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMG 93 (219)
T KOG0081|consen 14 ALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMG 93 (219)
T ss_pred hhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhcc
Confidence 37999999999999999999999999999999988877663 345889999999999999999999999999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAF 150 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 150 (206)
+++++|+++..+|-+++.|+..+.-+. -.+.-+++++||+|+++.+.++.+++..++.++|+||||+||-++.||.+..
T Consensus 94 FlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kav 173 (219)
T KOG0081|consen 94 FLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAV 173 (219)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHH
Confidence 999999999999999999999987554 2456699999999999989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 040835 151 LTVLTEIYRIVSKK 164 (206)
Q Consensus 151 ~~l~~~i~~~~~~~ 164 (206)
+.+++.++++...-
T Consensus 174 e~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 174 ELLLDLVMKRIEQC 187 (219)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2.1e-31 Score=189.33 Aligned_cols=156 Identities=33% Similarity=0.585 Sum_probs=136.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..++..++..+|++|+|||+++
T Consensus 5 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (166)
T cd00877 5 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS 84 (166)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC
Confidence 58999999999999999988888888888877777667777788999999999999999888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+..... ++|+++|+||+|+.. +... .+...++...+++++++||++++|++++|.++.+.+.+
T Consensus 85 ~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 85 RVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 9999999999999887764 799999999999863 3333 33456677778899999999999999999999988864
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.8e-31 Score=187.83 Aligned_cols=156 Identities=35% Similarity=0.567 Sum_probs=135.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|....+.+...++.+.+.......+++..+.+.+|||+|++.|..++..+++.+|++|+|+|+++
T Consensus 5 vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd04124 5 LLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR 84 (161)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 58999999999999999999988877777777766677778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+.... .+.|+++++||+|+... ...+...++...+++++++||+++.|++++|+.+++.+.+.
T Consensus 85 ~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 85 KITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999887654 46899999999998531 23445566777789999999999999999999999888764
No 63
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2e-31 Score=189.26 Aligned_cols=155 Identities=30% Similarity=0.388 Sum_probs=134.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++++++.+...+.++.+.++ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+|||+++
T Consensus 6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 84 (165)
T cd04140 6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS 84 (165)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC
Confidence 589999999999999999998877777765433 4455666778899999999999999989999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA---DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+++++.+..|+..+.... ..+.|+++|+||+|+...+.+...+...++..++++++++||++++|++++|++|++.
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 85 KQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 999999999888776543 2578999999999997666777778888888888999999999999999999999753
No 64
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=5.3e-31 Score=186.60 Aligned_cols=157 Identities=50% Similarity=0.847 Sum_probs=142.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+|+|+++
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 85 (163)
T cd01860 6 LLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS 85 (163)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC
Confidence 58999999999999999999988777887777777788888889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++++..+..|+..+.......+|+++++||+|+...+....++...++...+++++++||+++.|+.++|+++++.+
T Consensus 86 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 86 EESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999988776657799999999999876667788888899999899999999999999999999999875
No 65
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2e-31 Score=193.21 Aligned_cols=157 Identities=29% Similarity=0.488 Sum_probs=134.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|||+++
T Consensus 5 ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~ 83 (189)
T cd04134 5 VLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS 83 (189)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCC
Confidence 5899999999999999999998888888665543 455667778999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHcC-CeEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLR------------AVPTEDAKEFAEKEG-LCFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 146 (206)
+++++.+. .|+..+.... .+.|+++|+||+|+...+ .+..++...++...+ ++++++||+++.|+
T Consensus 84 ~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v 162 (189)
T cd04134 84 PDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGV 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCH
Confidence 99999886 5888887654 479999999999986432 345566778887776 68999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|.++++.+..
T Consensus 163 ~e~f~~l~~~~~~ 175 (189)
T cd04134 163 NEAFTEAARVALN 175 (189)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988863
No 66
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=5.7e-31 Score=186.08 Aligned_cols=156 Identities=42% Similarity=0.753 Sum_probs=140.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 5 liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 84 (161)
T cd01861 5 FLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 84 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC
Confidence 58999999999999999999988888887878878788888878899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++++..+..|+..+......+.|+++++||+|+...+....++...++...+++++++|++++.|++++|.++.+.
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 85 RQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 9999999999998876554579999999999996556777788888888889999999999999999999999864
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=5.4e-31 Score=187.90 Aligned_cols=155 Identities=39% Similarity=0.669 Sum_probs=137.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.|||+||++.+..++..+++.+|++|+|||+++
T Consensus 10 vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (170)
T cd04116 10 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD 89 (170)
T ss_pred EECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 58999999999999999999988888887777766777788889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA----DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
++++..+..|+..+.... ..+.|+++++||+|+. .+.+..+++.+++++.+ .+++++||+++.|+.++|.++++
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 90 SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 999999999988776543 2568999999999986 35677888999998887 47999999999999999999986
Q ss_pred H
Q 040835 156 E 156 (206)
Q Consensus 156 ~ 156 (206)
.
T Consensus 169 ~ 169 (170)
T cd04116 169 R 169 (170)
T ss_pred h
Confidence 5
No 68
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.7e-31 Score=187.06 Aligned_cols=157 Identities=40% Similarity=0.583 Sum_probs=136.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+ +.......+++..+.+.+|||||++++..++..+++.+|++++|+|+++
T Consensus 5 v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (164)
T smart00173 5 VLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD 83 (164)
T ss_pred EECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999988877777755 3334556677778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+++++.+..|...+.... ..+.|+++|+||+|+...+....++...++...+++++++||+++.|++++|+++++.+.
T Consensus 84 ~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 84 RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 999999999888876543 347899999999999766667777888888888999999999999999999999987654
No 69
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=5.9e-31 Score=187.75 Aligned_cols=157 Identities=41% Similarity=0.712 Sum_probs=140.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-AVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~d~~ 79 (206)
++|++|||||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++|+|||++
T Consensus 7 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T cd04115 7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT 86 (170)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC
Confidence 58999999999999999999888888888877777778888888999999999999886 57888899999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCC---CCCHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALE---STNVELAFLTVLT 155 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~l~~ 155 (206)
+++++..+..|+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||++ +.+++++|..+++
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 87 NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 9999999999998887654 35799999999999987777888888899998899999999999 8999999999987
Q ss_pred HH
Q 040835 156 EI 157 (206)
Q Consensus 156 ~i 157 (206)
.+
T Consensus 167 ~~ 168 (170)
T cd04115 167 KL 168 (170)
T ss_pred Hh
Confidence 65
No 70
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.7e-31 Score=189.33 Aligned_cols=154 Identities=29% Similarity=0.476 Sum_probs=133.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+.+++.+.+...+.++.+. .....+.+++..+.+.||||+|++.+..++..+++++|++|+|||+++
T Consensus 6 iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (174)
T cd01871 6 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 84 (174)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC
Confidence 5899999999999999999998888888653 334456678888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
++++..+. .|+..+.... .++|+++|+||+|+... +.+..+++..++.+++. ++++|||++++|+
T Consensus 85 ~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 163 (174)
T cd01871 85 PASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGL 163 (174)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCH
Confidence 99999985 5888776654 57999999999998532 34778888999999984 8999999999999
Q ss_pred HHHHHHHHHH
Q 040835 147 ELAFLTVLTE 156 (206)
Q Consensus 147 ~~~~~~l~~~ 156 (206)
+++|+.+++.
T Consensus 164 ~~~f~~l~~~ 173 (174)
T cd01871 164 KTVFDEAIRA 173 (174)
T ss_pred HHHHHHHHHh
Confidence 9999998863
No 71
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=183.19 Aligned_cols=160 Identities=47% Similarity=0.777 Sum_probs=148.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
++|+.++|||+|+-++..+.|.. ....|+|+++..+.+..++..+++++|||+|+++|++....|++.+|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 58999999999999988887753 45778899999899999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+..+|++...|+.++.++....+.+.+++||+|+..++.+..++.+.+++.+++|++++||++|.||+-.|-.|.+.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence 99999999999999999888888999999999998889999999999999999999999999999999999998887765
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 162 ~ 162 (192)
T KOG0083|consen 162 L 162 (192)
T ss_pred h
Confidence 4
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.9e-31 Score=192.61 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=132.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh--------hhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR--------AVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+++|.++.+...+.|+.+.......+..++..+.+.+|||||.+.+. ......++.+|++
T Consensus 5 ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i 84 (198)
T cd04142 5 VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF 84 (198)
T ss_pred EECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence 58999999999999999999988888887766665666778888999999999965432 1233457899999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHA---DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-KEGLCFMETSALESTNVEL 148 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~ 148 (206)
|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+....++...++. .+++++++|||++|.|+++
T Consensus 85 ilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 85 ILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILL 164 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHH
Confidence 99999999999999999988876653 3679999999999997656667777777654 5689999999999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 149 AFLTVLTEIYRI 160 (206)
Q Consensus 149 ~~~~l~~~i~~~ 160 (206)
+|+.+++.++..
T Consensus 165 lf~~i~~~~~~~ 176 (198)
T cd04142 165 LFKELLISATTR 176 (198)
T ss_pred HHHHHHHHhhcc
Confidence 999999887743
No 73
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.8e-31 Score=189.33 Aligned_cols=157 Identities=29% Similarity=0.500 Sum_probs=135.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||+++
T Consensus 3 i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 3 VVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence 689999999999999999999887777755443 4456677888899999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+++++.+. .|+..+.... .++|+++|+||+|+... +.+..++...+++..+. +++++||+++.|+
T Consensus 82 ~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 160 (174)
T smart00174 82 PASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV 160 (174)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence 99999885 5888887654 57999999999998542 23677788889999986 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|..+++.+++
T Consensus 161 ~~lf~~l~~~~~~ 173 (174)
T smart00174 161 REVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988753
No 74
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.4e-30 Score=190.66 Aligned_cols=159 Identities=45% Similarity=0.727 Sum_probs=137.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+. .+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 19 ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~ 97 (211)
T PLN03118 19 LIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR 97 (211)
T ss_pred EECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC
Confidence 5899999999999999998774 556777777777777777888899999999999999999999999999999999999
Q ss_pred hhhHHHHHH-HHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVAR-WLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++++..+.. |...+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|.+|.+.+.
T Consensus 98 ~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 98 RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999998865 665554332 246899999999999766677778888888888999999999999999999999999986
Q ss_pred HH
Q 040835 159 RI 160 (206)
Q Consensus 159 ~~ 160 (206)
..
T Consensus 178 ~~ 179 (211)
T PLN03118 178 EV 179 (211)
T ss_pred hh
Confidence 65
No 75
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1e-30 Score=184.71 Aligned_cols=155 Identities=34% Similarity=0.567 Sum_probs=134.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|+|+++
T Consensus 6 iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~ 84 (162)
T cd04138 6 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS 84 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC
Confidence 589999999999999999998888877765443 4556677778889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..++..+..|+..+.... ..+.|+++|+||+|+.. +.....+...++...+++++++||+++.|++++|.++++.+
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 85 RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 999999998988877654 35789999999999865 45567778888888899999999999999999999998654
No 76
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1e-30 Score=185.21 Aligned_cols=156 Identities=35% Similarity=0.513 Sum_probs=135.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||||++++++..+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|+|+++
T Consensus 7 i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 85 (164)
T cd04145 7 VVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD 85 (164)
T ss_pred EECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 58999999999999999988877777775533 34456677888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..++..+..|+..+.... ..+.|+++++||+|+...+.+..++...+++..+++++++||+++.|++++|+++++.+
T Consensus 86 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 86 RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 999999999988876643 35789999999999976666677788888888889999999999999999999998764
No 77
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=2.5e-30 Score=182.75 Aligned_cols=157 Identities=41% Similarity=0.700 Sum_probs=139.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|+...+.....++.+.......+...+....+.+||++|++.+..++..+++.+|++++|+|+++
T Consensus 5 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (162)
T cd04123 5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD 84 (162)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC
Confidence 58999999999999999998877776666666666666667777899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++++..+..|+..+......++|+++++||+|+...+.+..++...++...+.+++++|++++.|++++|+++.+.+
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 85 ADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999999888776656799999999999986667778888888888899999999999999999999998765
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=2.4e-30 Score=183.47 Aligned_cols=156 Identities=33% Similarity=0.570 Sum_probs=136.0
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 77 (206)
|+|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..++..+|++++|+|
T Consensus 5 vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 84 (164)
T cd04101 5 VVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYD 84 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 5899999999999999865 6777888887777766666554 567899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 78 ITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 78 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+++++++..+..|+..+.... .+.|+++|+||+|+.....+...+...+....+++++++||+++.|++++|..+.+.+
T Consensus 85 ~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 85 VSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 999999999999998887654 5699999999999976666777777778888889999999999999999999998865
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=5.6e-30 Score=182.83 Aligned_cols=160 Identities=42% Similarity=0.702 Sum_probs=140.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+++|+++
T Consensus 5 viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (172)
T cd01862 5 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN 84 (172)
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC
Confidence 58999999999999999999888888887777777777788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
++++..+..|...+..... .++|+++|+||+|+..+.....++...+.+..+ .+++++|++++.|++++|+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 164 (172)
T cd01862 85 PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIAR 164 (172)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 9999888888877654432 379999999999997556667788888888887 78999999999999999999999
Q ss_pred HHHHH
Q 040835 156 EIYRI 160 (206)
Q Consensus 156 ~i~~~ 160 (206)
.+++.
T Consensus 165 ~~~~~ 169 (172)
T cd01862 165 KALEQ 169 (172)
T ss_pred HHHhc
Confidence 88776
No 80
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2e-30 Score=188.27 Aligned_cols=153 Identities=25% Similarity=0.404 Sum_probs=125.0
Q ss_pred CccCCCCCHHHHHH-HHhcCC-----CCCCCccccce-eeEEEE--------EEECCeEEEEEEEeCCCchhhhhhhHhH
Q 040835 1 LIGDSAVGKSQLLA-RFARDE-----FSLDSKATIGV-EFQTKT--------LVIHHKNVKAQIWDTAGQERYRAVTSAY 65 (206)
Q Consensus 1 v~G~~~~GKTtLl~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 65 (206)
++|+.|||||||+. ++.+.. +...+.||++. +.+... ..+++..+.+.||||+|++.. ....+
T Consensus 7 ~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~~~~~ 84 (195)
T cd01873 7 VVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--DRRFA 84 (195)
T ss_pred EECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--hhccc
Confidence 58999999999995 555443 44566777642 222222 246788899999999999753 45678
Q ss_pred hcCCcEEEEEeeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc-------------------CCCCCHHHHH
Q 040835 66 YRGAVGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLET-------------------LRAVPTEDAK 125 (206)
Q Consensus 66 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~ 125 (206)
++++|++|+|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.. .+.+..+++.
T Consensus 85 ~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 85 YGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred CCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 99999999999999999999996 5988887655 4789999999999853 3678889999
Q ss_pred HHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 126 EFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 126 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
.++++++++|+||||+++.||+++|..+++.
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999999999998864
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.3e-30 Score=183.77 Aligned_cols=157 Identities=34% Similarity=0.495 Sum_probs=133.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++++...+...+.++.... ....+.+++..+.+.+||+||++. +......+++.+|++|+|+|++
T Consensus 4 vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 82 (165)
T cd04146 4 VLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSIT 82 (165)
T ss_pred EECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECC
Confidence 68999999999999999988877777765433 345567788889999999999885 3445678899999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCC-CCHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA--DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALES-TNVELAFLTVLTE 156 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~v~~~~~~l~~~ 156 (206)
++++++.+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+.+++++||+++ .|++++|..+.+.
T Consensus 83 ~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~ 162 (165)
T cd04146 83 DRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCRE 162 (165)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHH
Confidence 9999999999988877654 357999999999999766777888888999999999999999999 5999999999987
Q ss_pred HH
Q 040835 157 IY 158 (206)
Q Consensus 157 i~ 158 (206)
+.
T Consensus 163 ~~ 164 (165)
T cd04146 163 VR 164 (165)
T ss_pred Hh
Confidence 64
No 82
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=7.4e-30 Score=179.37 Aligned_cols=154 Identities=57% Similarity=0.907 Sum_probs=140.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|.+..+...+.++.+.+.....+..+...+.+.+||+||++.+...+..+++++|++|+|+|+++
T Consensus 5 ~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 84 (159)
T cd00154 5 LIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN 84 (159)
T ss_pred EECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+........|+++++||+|+........+++..++...+.+++++|++++.|++++|.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 85 RESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 99999999999988877656799999999999975567778889999998899999999999999999999886
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=7.2e-30 Score=181.80 Aligned_cols=157 Identities=32% Similarity=0.508 Sum_probs=137.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++.|..++..+++.++++++|+|+++
T Consensus 6 liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~ 84 (168)
T cd04177 6 VLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTS 84 (168)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCC
Confidence 58999999999999999999887777776644 34566677788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+++++.+..|...+.... ..+.|+++++||+|+...+.+..++...+++.++ ++++++||+++.|++++|.+++..++
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 85 EASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 999999999988876543 3579999999999997667777788888888887 89999999999999999999998764
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=9e-30 Score=179.97 Aligned_cols=155 Identities=52% Similarity=0.849 Sum_probs=138.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+|+++
T Consensus 5 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd01863 5 LIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR 84 (161)
T ss_pred EECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 58999999999999999998877778887877777777777778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+.++..+..|+..+.... ..++|+++++||+|+.. .....++...++...+++++++|++++.|++++|+.+++.
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 85 RDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 999999999998887664 46799999999999974 4556778888999899999999999999999999998875
No 85
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=6.3e-30 Score=191.73 Aligned_cols=156 Identities=25% Similarity=0.426 Sum_probs=134.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|+.+.+...+.+|++ +.....+.+++..+.+.||||+|++.|..++..++..+|++|+|||+++
T Consensus 5 vlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~ 83 (247)
T cd04143 5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN 83 (247)
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC
Confidence 589999999999999999999888878765 4555667778888999999999999998888888999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc---------CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHHH
Q 040835 81 RQSFDNVARWLEELRGH---------ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-EGLCFMETSALESTNVELAF 150 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~ 150 (206)
+++|+.+..|+..+... ...++|+++|+||+|+...+.+..+++.+++.. .++.++++||+++.|++++|
T Consensus 84 ~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 84 RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999998887643 224789999999999976566777888777764 36789999999999999999
Q ss_pred HHHHHHH
Q 040835 151 LTVLTEI 157 (206)
Q Consensus 151 ~~l~~~i 157 (206)
.+|...+
T Consensus 164 ~~L~~~~ 170 (247)
T cd04143 164 RALFSLA 170 (247)
T ss_pred HHHHHHh
Confidence 9999754
No 86
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.9e-29 Score=179.70 Aligned_cols=157 Identities=45% Similarity=0.750 Sum_probs=138.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||||+++|....+.+...++.+.......+.+.+..+.+.+||++|++.+...+..++..+|++++|+|+++
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 91 (169)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999888877777777767776677788888899999999999999988999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.++..+..|+..+......++|+++++||+|+...+.+..+....+.+....+++++|++++.|++++|+++.+.+
T Consensus 92 ~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 92 EESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999888776656799999999999976667776767777777778899999999999999999998764
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.2e-29 Score=187.85 Aligned_cols=163 Identities=26% Similarity=0.329 Sum_probs=136.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhc-CCcEEEEEeeC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYR-GAVGAMLVYDI 78 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~v~d~ 78 (206)
|+|++|||||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|++.+ ....++. .+|++|+|||+
T Consensus 5 lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iilV~d~ 82 (221)
T cd04148 5 MLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVVVYSV 82 (221)
T ss_pred EECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEEEEEC
Confidence 5899999999999999888876 566666554666677778888899999999999832 3345566 89999999999
Q ss_pred CChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 79 TKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 79 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+++.++..+..|+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||+++.||+++|+++++.+
T Consensus 83 td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 83 TDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999998887654 25799999999999977677777888888888899999999999999999999999988
Q ss_pred HHHhhhhh
Q 040835 158 YRIVSKKA 165 (206)
Q Consensus 158 ~~~~~~~~ 165 (206)
.......+
T Consensus 163 ~~~~~~~~ 170 (221)
T cd04148 163 RLRRDSKE 170 (221)
T ss_pred Hhhhcccc
Confidence 76554443
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=8.2e-30 Score=179.51 Aligned_cols=149 Identities=20% Similarity=0.350 Sum_probs=125.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+.|||||||+.+++.+.+...+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++|||+++
T Consensus 5 vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~ 77 (158)
T cd04103 5 IVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN 77 (158)
T ss_pred EECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC
Confidence 5899999999999999998887766554 3233 45677888888999999999975 346788999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCC--cCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLE--TLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+++|..+..|+..+..... .+.|+++|+||.|+. ..+.+..++..+++++. ++.|++|||+++.||+++|..+.+.
T Consensus 78 ~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 78 EASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999876653 568999999999984 35678888888998876 5899999999999999999998854
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.3e-29 Score=181.23 Aligned_cols=153 Identities=31% Similarity=0.538 Sum_probs=131.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||||+.++..+.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+|||+++
T Consensus 5 i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~ 83 (173)
T cd04130 5 LVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN 83 (173)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCC
Confidence 58999999999999999999888887774 44555567778888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLET------------LRAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+++++.+. .|+..+.... .+.|+++++||+|+.. .+.+..+++..+++..+. .++++||+++.|+
T Consensus 84 ~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v 162 (173)
T cd04130 84 PSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNL 162 (173)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 99999884 6888777543 4699999999999853 356677888999999887 8999999999999
Q ss_pred HHHHHHHHH
Q 040835 147 ELAFLTVLT 155 (206)
Q Consensus 147 ~~~~~~l~~ 155 (206)
+++|+.++-
T Consensus 163 ~~lf~~~~~ 171 (173)
T cd04130 163 KEVFDTAIL 171 (173)
T ss_pred HHHHHHHHh
Confidence 999988763
No 90
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=9.5e-30 Score=181.27 Aligned_cols=156 Identities=22% Similarity=0.224 Sum_probs=133.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|+++.+. ..+.+|.+..+....+.+++..+.+.+||++|++.+..++..+++.+|++|+|+|++
T Consensus 9 ~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~ 88 (169)
T cd01892 9 VLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS 88 (169)
T ss_pred EECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC
Confidence 5899999999999999999998 788888877776667777888889999999999999888999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++.+++.+..|+..+... .++|+++|+||+|+...+.....+...+++.+++ .++++||+++.|++++|..+.+.+.
T Consensus 89 ~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 89 DPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 999999888888765432 3699999999999965444444456677787877 4799999999999999999998765
No 91
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=2.7e-29 Score=179.72 Aligned_cols=155 Identities=29% Similarity=0.498 Sum_probs=132.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|..+.+...+.++.. ......+.+++..+.+.+|||+|++.+...+..+++.+|++|+|+|+++
T Consensus 5 i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~ 83 (174)
T cd04135 5 VVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN 83 (174)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC
Confidence 589999999999999999998877777754 3334456777888889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.+++.+. .|+..+... ..+.|+++++||+|+.+. ..+..+++..+++..+. +++++||+++.|+
T Consensus 84 ~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi 162 (174)
T cd04135 84 PASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGL 162 (174)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCH
Confidence 99998885 587777655 468999999999998532 25667788888888886 7999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 147 ELAFLTVLTEI 157 (206)
Q Consensus 147 ~~~~~~l~~~i 157 (206)
+++|+.+++.+
T Consensus 163 ~~~f~~~~~~~ 173 (174)
T cd04135 163 KTVFDEAILAI 173 (174)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=6.5e-29 Score=175.13 Aligned_cols=156 Identities=37% Similarity=0.580 Sum_probs=136.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+.....++.. .........++..+.+.+||+||++.+...+..+++.+|++++|+|+++
T Consensus 4 i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 82 (160)
T cd00876 4 VLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD 82 (160)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 589999999999999999888777777755 4555556666677899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++++..+..|...+..... ..+|+++++||+|+........+++..++..++.+++++|++++.|++++|++|++.+
T Consensus 83 ~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 83 RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 9999999998888776553 5799999999999977667778889999998899999999999999999999998753
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.2e-28 Score=174.45 Aligned_cols=157 Identities=39% Similarity=0.574 Sum_probs=136.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|+...+...+.++.+.. .......++..+.+.+||+||++.+...+..+++.+|++++|+|+++
T Consensus 5 ~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (164)
T cd04139 5 VVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD 83 (164)
T ss_pred EECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC
Confidence 58999999999999999998887777775533 34555677788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+.++..+..|+..+.... ..++|+++++||+|+.........+...+...++++++++||++++|++++|+++.+.+.
T Consensus 84 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 84 MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999999888877653 357999999999999764556777788888888999999999999999999999988765
No 94
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.8e-30 Score=181.52 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=123.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|.+..+...+.||.+... ..+++..+.+.+||++|++.+...+..+++++|++|+|+|.++
T Consensus 4 ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 4 VLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999888777788876543 2345567899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH----HHHHHHHHHcCCeEEEeccCC------CCCHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT----EDAKEFAEKEGLCFMETSALE------STNVELAF 150 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~ 150 (206)
+.++...+.|+..+.... .++|+++|+||+|+...+.+.. .++..++.+.++.++++||++ ++||+++|
T Consensus 80 ~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 80 SERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 999998888888776543 5799999999999865443221 123455566678899998888 99999999
Q ss_pred HHHHH
Q 040835 151 LTVLT 155 (206)
Q Consensus 151 ~~l~~ 155 (206)
..++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 98864
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1e-28 Score=178.40 Aligned_cols=161 Identities=36% Similarity=0.502 Sum_probs=148.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|+|||+|..+|....|...++||++ +.+...+.+++....+.|+||+|++++..+...++..+|++++||++++
T Consensus 8 vlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd 86 (196)
T KOG0395|consen 8 VLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD 86 (196)
T ss_pred EECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC
Confidence 589999999999999999999999999977 6777888899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++...++..++++++|+||+.+.+++++|..+++.+-.
T Consensus 87 ~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 87 RSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 9999999999998855443 568999999999999889999999999999999999999999999999999999988876
Q ss_pred Hhh
Q 040835 160 IVS 162 (206)
Q Consensus 160 ~~~ 162 (206)
.+.
T Consensus 167 ~~~ 169 (196)
T KOG0395|consen 167 PRE 169 (196)
T ss_pred hhc
Confidence 433
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=5e-28 Score=174.12 Aligned_cols=159 Identities=38% Similarity=0.564 Sum_probs=135.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|+|||||+++|.+..+.....++.+..+ ......++..+.+.+||+||++.+...+..++..++++++++|+++
T Consensus 6 l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (180)
T cd04137 6 VLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS 84 (180)
T ss_pred EECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999888776777654433 3455666777889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
..+++.+..|+..+.+.. ..+.|+++++||+|+...+.+..++...++..++.+++++||+++.|+.++|.++.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 85 RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999988877775543 3578999999999997656667777788888888999999999999999999999988765
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 165 ~ 165 (180)
T cd04137 165 V 165 (180)
T ss_pred h
Confidence 4
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=4.7e-28 Score=173.46 Aligned_cols=155 Identities=30% Similarity=0.515 Sum_probs=129.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++|+|+++
T Consensus 6 iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~ 84 (175)
T cd01870 6 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 84 (175)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC
Confidence 5899999999999999999998878777664443 456677788899999999999998888888999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+++++.+. .|+..+.... .++|+++++||+|+... ..+...+...++...+. ++++|||+++.|+
T Consensus 85 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 163 (175)
T cd01870 85 PDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGV 163 (175)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCH
Confidence 99998885 5877776543 47999999999998532 23445667778877764 7999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 147 ELAFLTVLTEI 157 (206)
Q Consensus 147 ~~~~~~l~~~i 157 (206)
+++|.++.+.+
T Consensus 164 ~~lf~~l~~~~ 174 (175)
T cd01870 164 REVFEMATRAA 174 (175)
T ss_pred HHHHHHHHHHh
Confidence 99999998654
No 98
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=5.3e-28 Score=176.50 Aligned_cols=157 Identities=31% Similarity=0.426 Sum_probs=130.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|+...+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++..+|++|+|||+++
T Consensus 4 vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~ 82 (198)
T cd04147 4 FMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD 82 (198)
T ss_pred EECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC
Confidence 589999999999999999988877766654 3445566677777899999999999999888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCc-CCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLET-LRAVPTEDAKEFAE-KEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.+++.+..|+..+..... .++|+++|+||+|+.. .+.+..++..+... .++.+++++||+++.|++++|+++++.+
T Consensus 83 ~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 83 PESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999888766543 5799999999999854 34455544444443 4567899999999999999999999866
Q ss_pred H
Q 040835 158 Y 158 (206)
Q Consensus 158 ~ 158 (206)
.
T Consensus 163 ~ 163 (198)
T cd04147 163 N 163 (198)
T ss_pred h
Confidence 4
No 99
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.4e-28 Score=174.08 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=123.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||+++|.+..+.. +.+|.+..... ++...+.+.+||+||++.+...+..+++.+|++++|+|.++
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~ 78 (169)
T cd04158 4 TLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred EECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc
Confidence 58999999999999999987643 56666555432 23346889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG------LCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~~l 153 (206)
++++..+..|+..+.... ..+.|+++++||+|+.. .+..+++..++...+ +.++++||+++.||+++|++|
T Consensus 79 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l 156 (169)
T cd04158 79 RDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWL 156 (169)
T ss_pred HHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHH
Confidence 999999988888776543 24589999999999863 356666666654222 368899999999999999999
Q ss_pred HHHHHHH
Q 040835 154 LTEIYRI 160 (206)
Q Consensus 154 ~~~i~~~ 160 (206)
.+.+...
T Consensus 157 ~~~~~~~ 163 (169)
T cd04158 157 SRQLVAA 163 (169)
T ss_pred HHHHhhc
Confidence 8877654
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=7.5e-28 Score=173.62 Aligned_cols=160 Identities=18% Similarity=0.342 Sum_probs=126.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
++|.+|||||||+++|....+... .+|.+.+.....+.. ++..+.+.+|||+|++.+..++..+++.+|++|+|+|++
T Consensus 8 ~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~ 86 (183)
T cd04152 8 MLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSV 86 (183)
T ss_pred EECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECC
Confidence 589999999999999999887644 566666665555444 346789999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH--H----cCCeEEEeccCCCCCHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE--K----EGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
+..++..+..|+..+.... ..+.|+++++||+|+.. ....++...+.. . .+++++++||++++|++++|++
T Consensus 87 ~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 164 (183)
T cd04152 87 DVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEK 164 (183)
T ss_pred CHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHH
Confidence 9998888888877765432 35799999999999853 234444444432 1 1246899999999999999999
Q ss_pred HHHHHHHHhhh
Q 040835 153 VLTEIYRIVSK 163 (206)
Q Consensus 153 l~~~i~~~~~~ 163 (206)
|.+.+.+.++-
T Consensus 165 l~~~l~~~~~~ 175 (183)
T cd04152 165 LYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHhh
Confidence 99998766543
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=2.5e-28 Score=173.79 Aligned_cols=148 Identities=22% Similarity=0.393 Sum_probs=117.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|..+.+. .+.||.+.++.. +. ...+.+.+|||+|++.+...+..+++.+|++|+|||+++
T Consensus 14 i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~ 88 (168)
T cd04149 14 MLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD 88 (168)
T ss_pred EECcCCCCHHHHHHHHccCCCc-cccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc
Confidence 5899999999999999887764 356676665542 22 346889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++..+..|+..+.... ..++|+++|+||+|+.. .+..+++..+... ...+++++||++|.|++++|++|.
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 89 RDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred hhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 999988887776654322 24689999999999864 2455666655431 234689999999999999999986
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
+
T Consensus 167 ~ 167 (168)
T cd04149 167 S 167 (168)
T ss_pred c
Confidence 4
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3.7e-28 Score=174.78 Aligned_cols=152 Identities=20% Similarity=0.346 Sum_probs=118.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..|||||||+++|..+.+. .+.||.+.+... ++...+.+.+||+||++.+..++..+++++|++|+|+|+++
T Consensus 22 ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~ 96 (181)
T PLN00223 22 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96 (181)
T ss_pred EECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc
Confidence 5899999999999999987775 456776665432 23346889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-----LCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..++..+... ...+.|++|++||+|+... ...++......-.. +.++++||++|+|++++|++|.
T Consensus 97 ~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 174 (181)
T PLN00223 97 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174 (181)
T ss_pred HHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence 99998887776665432 2247899999999998642 33344333322111 2466899999999999999998
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+.+
T Consensus 175 ~~~~~ 179 (181)
T PLN00223 175 NNIAN 179 (181)
T ss_pred HHHhh
Confidence 88765
No 103
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=8.1e-28 Score=174.04 Aligned_cols=158 Identities=32% Similarity=0.527 Sum_probs=131.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++++|+++
T Consensus 6 ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~ 84 (187)
T cd04129 6 IVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT 84 (187)
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCC
Confidence 689999999999999998888766666644333 3355667777889999999999888777778899999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc----------CCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLET----------LRAVPTEDAKEFAEKEGL-CFMETSALESTNVEL 148 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 148 (206)
.+++..+. .|+..+.... ...|+++|+||+|+.. .+.+..++...+++..+. ++|++||+++.|+++
T Consensus 85 ~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 163 (187)
T cd04129 85 PDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDD 163 (187)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHH
Confidence 99999986 5888887654 4699999999999843 234556778888888885 799999999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 149 AFLTVLTEIYRI 160 (206)
Q Consensus 149 ~~~~l~~~i~~~ 160 (206)
+|.++.+.+...
T Consensus 164 ~f~~l~~~~~~~ 175 (187)
T cd04129 164 VFEAATRAALLV 175 (187)
T ss_pred HHHHHHHHHhcc
Confidence 999999877555
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.1e-27 Score=168.97 Aligned_cols=148 Identities=20% Similarity=0.367 Sum_probs=114.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||+++|..+.+. .+.||.+..... +. ...+.+.+||+||++.+...+..+++++|++|+|+|+++
T Consensus 5 ~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 5 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred EECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 5899999999999999887775 466776665432 22 246889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++..+..|+..+... .....|+++++||+|+... ...+++..... ..++.++++||++|.|++++|++|.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 80 RERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred HHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 99999888877665432 2246899999999998642 22333322221 1234578999999999999999986
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
+
T Consensus 158 ~ 158 (159)
T cd04150 158 N 158 (159)
T ss_pred c
Confidence 4
No 105
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=2.3e-27 Score=169.88 Aligned_cols=150 Identities=22% Similarity=0.371 Sum_probs=116.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||+++|..+.+. .+.||.+..+.. .. ...+.+.+||+||++.+...+..+++++|++|+|+|+++
T Consensus 18 l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~ 92 (175)
T smart00177 18 MVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VT--YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND 92 (175)
T ss_pred EEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EE--ECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC
Confidence 5899999999999999877764 456776665542 22 245889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+++++....|+..+.... ..+.|++||+||+|+... ...+++...... ..+.++++||++|+|++++|++|.
T Consensus 93 ~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 93 RDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred HHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 999998888877765432 246899999999998642 233333332211 123477899999999999999998
Q ss_pred HHH
Q 040835 155 TEI 157 (206)
Q Consensus 155 ~~i 157 (206)
+.+
T Consensus 171 ~~~ 173 (175)
T smart00177 171 NNL 173 (175)
T ss_pred HHh
Confidence 764
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.3e-27 Score=168.52 Aligned_cols=156 Identities=28% Similarity=0.346 Sum_probs=120.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|.++.+...+.++ ... ......+.+..+.+.+|||+|.+.+...+..++..+|++++|||+++
T Consensus 5 ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 82 (166)
T cd01893 5 LIGDEGVGKSSLIMSLVSEEFPENVPRV-LPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDR 82 (166)
T ss_pred EECCCCCCHHHHHHHHHhCcCCccCCCc-ccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCC
Confidence 5899999999999999999886554332 222 22334455677899999999998888778888899999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAEKEG--LCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+.+++.+. .|+..+.... .+.|+++|+||+|+.+.... ..+++..++..+. .+++++||+++.|++++|+.+..
T Consensus 83 ~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 83 PSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHH
Confidence 99999875 6888777655 47999999999999653332 1233334444432 37999999999999999999988
Q ss_pred HHHH
Q 040835 156 EIYR 159 (206)
Q Consensus 156 ~i~~ 159 (206)
.+++
T Consensus 162 ~~~~ 165 (166)
T cd01893 162 AVLH 165 (166)
T ss_pred HhcC
Confidence 7654
No 107
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=6.1e-27 Score=170.33 Aligned_cols=144 Identities=24% Similarity=0.383 Sum_probs=121.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-----CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-----HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 75 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 75 (206)
++|..|||||||+++|..+.+...+.+|++.++....+.++ +..+.+.||||+|++.|..++..+++++|++|+|
T Consensus 5 lvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlV 84 (202)
T cd04102 5 VVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILV 84 (202)
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999988888888877766666653 4578899999999999999999999999999999
Q ss_pred eeCCChhhHHHHHHHHHHHHhc-------------------CCCCCcEEEEEeCCCCCcCCCCCHHH----HHHHHHHcC
Q 040835 76 YDITKRQSFDNVARWLEELRGH-------------------ADKNIIIMLVGNKSDLETLRAVPTED----AKEFAEKEG 132 (206)
Q Consensus 76 ~d~~~~~s~~~~~~~~~~~~~~-------------------~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~~~~~ 132 (206)
||++++.+++.+..|+..+... ...++|+++|+||.|+..++.+.... ...++.+.+
T Consensus 85 yDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~ 164 (202)
T cd04102 85 HDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGN 164 (202)
T ss_pred EECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcC
Confidence 9999999999999999998653 12468999999999997655554442 446678889
Q ss_pred CeEEEeccCCCC
Q 040835 133 LCFMETSALEST 144 (206)
Q Consensus 133 ~~~~~~Sa~~~~ 144 (206)
++.++.++.+..
T Consensus 165 ~~~i~~~c~~~~ 176 (202)
T cd04102 165 AEEINLNCTNGR 176 (202)
T ss_pred CceEEEecCCcc
Confidence 998888877554
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=4.5e-27 Score=169.34 Aligned_cols=153 Identities=23% Similarity=0.379 Sum_probs=117.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||++++..+.+.. +.||.+.++.. + +...+.+.+||++|++.+...+..+++.+|++|+|+|+++
T Consensus 22 lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~ 96 (182)
T PTZ00133 22 MVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND 96 (182)
T ss_pred EEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 58999999999999998877754 56676655432 2 2346889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++.....++..+... ....+|+++++||.|+.. ....+++...... ..+.++++||+++.|++++|++|.
T Consensus 97 ~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 97 RERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred HHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 99998887776665432 224689999999999853 2233333222211 123577999999999999999999
Q ss_pred HHHHHH
Q 040835 155 TEIYRI 160 (206)
Q Consensus 155 ~~i~~~ 160 (206)
+.+.+.
T Consensus 175 ~~i~~~ 180 (182)
T PTZ00133 175 ANIKKS 180 (182)
T ss_pred HHHHHh
Confidence 877664
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.3e-26 Score=171.30 Aligned_cols=156 Identities=31% Similarity=0.552 Sum_probs=136.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++++.+.+...+.++.+.++....+..+...+.+.+||++|++.+...+..++..++++|+|+|+++
T Consensus 14 liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 93 (215)
T PTZ00132 14 LVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS 93 (215)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 58999999999999999888888888998888877777778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.... .+.|+++++||+|+.. +.... +...++...++.++++|++++.|+++.|.++.+.+..
T Consensus 94 ~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~ 169 (215)
T PTZ00132 94 RITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD-RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999887655 5689999999999864 33333 3346677778899999999999999999999988765
No 110
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2e-28 Score=173.40 Aligned_cols=159 Identities=31% Similarity=0.528 Sum_probs=143.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|||+.++|||+|+-.+..+.|+..+.||+. +-+...++++ +..+.+.+|||+|+++|+.+++..++++|++++||++.
T Consensus 9 vVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~ 87 (198)
T KOG0393|consen 9 VVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVV 87 (198)
T ss_pred EECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcC
Confidence 689999999999999999999999999976 4555678885 99999999999999999999988999999999999999
Q ss_pred ChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEeccCCCCC
Q 040835 80 KRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEG-LCFMETSALESTN 145 (206)
Q Consensus 80 ~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 145 (206)
++++++++ ..|+.++...+ +++|+++|++|.|+..+ ..+..++...+++++| ..|+||||++..|
T Consensus 88 ~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~ 166 (198)
T KOG0393|consen 88 SPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKG 166 (198)
T ss_pred ChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCC
Confidence 99999997 55999999988 78999999999999632 3567788999999999 5699999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 040835 146 VELAFLTVLTEIYRIV 161 (206)
Q Consensus 146 v~~~~~~l~~~i~~~~ 161 (206)
++++|+..+...+...
T Consensus 167 v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 167 VKEVFDEAIRAALRPP 182 (198)
T ss_pred cHHHHHHHHHHHhccc
Confidence 9999999999888763
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=6.2e-27 Score=166.90 Aligned_cols=153 Identities=31% Similarity=0.543 Sum_probs=127.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.. .........++..+.+.+||+||++.+......+++.+|++++|||+++
T Consensus 5 i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (171)
T cd00157 5 VVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS 83 (171)
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC
Confidence 589999999999999999998766666644 3344455667888999999999999888888888999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC-----------CCCHHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLR-----------AVPTEDAKEFAEKEGL-CFMETSALESTNVE 147 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 147 (206)
++++.... .|+..+.... .+.|+++|+||+|+.... .+..++...+...++. +++++||+++.|++
T Consensus 84 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (171)
T cd00157 84 PSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVK 162 (171)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHH
Confidence 99987764 5777776554 479999999999985433 2356777888888887 89999999999999
Q ss_pred HHHHHHHH
Q 040835 148 LAFLTVLT 155 (206)
Q Consensus 148 ~~~~~l~~ 155 (206)
++|.++++
T Consensus 163 ~l~~~i~~ 170 (171)
T cd00157 163 EVFEEAIR 170 (171)
T ss_pred HHHHHHhh
Confidence 99999875
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=3.3e-27 Score=166.91 Aligned_cols=149 Identities=20% Similarity=0.335 Sum_probs=115.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF-SLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
++|++|||||||+++|.+..+ ...+.++.+.+... +....+.+.+|||||++.+...+..+++.+|++|+|+|++
T Consensus 4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~ 79 (162)
T cd04157 4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSS 79 (162)
T ss_pred EECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCC
Confidence 589999999999999998753 45566776654432 2234688999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA---DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
++.++.....|+..+.... ..++|+++++||+|+.... ...++..... ....+++++||+++.|++++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 80 DRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 9999888888877765432 3579999999999986422 2233322221 1134589999999999999999
Q ss_pred HHHH
Q 040835 152 TVLT 155 (206)
Q Consensus 152 ~l~~ 155 (206)
+|.+
T Consensus 158 ~l~~ 161 (162)
T cd04157 158 WLQA 161 (162)
T ss_pred HHhc
Confidence 9864
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=4.6e-27 Score=168.08 Aligned_cols=148 Identities=23% Similarity=0.357 Sum_probs=116.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|.+..+ ....++.+... ..+.++ .+.+.+||+||++.+...+..+++.+|++++|+|+++
T Consensus 19 ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (173)
T cd04154 19 ILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD 93 (173)
T ss_pred EECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 589999999999999998755 34556655433 233333 5789999999999998899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++.....|+..+... ...+.|+++|+||+|+... ...+++..+.. ..+++++++||++|.|++++|.+++
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 94 RLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 99998888887776432 2357999999999998642 24455555543 2356899999999999999999986
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
+
T Consensus 172 ~ 172 (173)
T cd04154 172 D 172 (173)
T ss_pred c
Confidence 4
No 114
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=2.4e-26 Score=164.31 Aligned_cols=141 Identities=40% Similarity=0.705 Sum_probs=126.8
Q ss_pred CCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcC
Q 040835 19 DEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHA 98 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 98 (206)
+.|...+.+|++.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677888999988888888888889999999999999999999999999999999999999999999999999887655
Q ss_pred CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 99 DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 99 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
..++|+++|+||+|+...+.+..++...++..++..++++||++++||+++|.+|++.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999997666778888888998889999999999999999999999988755
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=1.9e-27 Score=169.07 Aligned_cols=148 Identities=21% Similarity=0.303 Sum_probs=116.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|.+. +...+.+|.+.+. ..+. ...+.+.+||+||++.+..++..+++++|++|+|+|+++
T Consensus 4 ~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 4 TVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred EECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc
Confidence 5899999999999999976 6666777776543 2333 345789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHH------HHHHHHc--CCeEEEeccCCC------CC
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDA------KEFAEKE--GLCFMETSALES------TN 145 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~--~~~~~~~Sa~~~------~~ 145 (206)
..++..+..|+..+.... ..++|+++|+||+|+...+ ...++ ..++.+. .+.+++|||++| .|
T Consensus 79 ~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 79 DDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred hhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 999999999988876543 2578999999999986533 22222 2233222 246788999998 89
Q ss_pred HHHHHHHHHH
Q 040835 146 VELAFLTVLT 155 (206)
Q Consensus 146 v~~~~~~l~~ 155 (206)
+.+.|+||..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999974
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.9e-26 Score=165.06 Aligned_cols=148 Identities=24% Similarity=0.388 Sum_probs=114.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|+|||||+++|..+.+.. ..++.+.+... ... ..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 20 ~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~ 94 (174)
T cd04153 20 IVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD 94 (174)
T ss_pred EECCCCCCHHHHHHHHccCCCCC-cCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 58999999999999999887764 45665655432 222 35889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFA-----EKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++.....++..+.... ..+.|+++++||+|+.. ....+++.... ...+++++++||++++|++++|++|.
T Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 95 RERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 998887777666654332 24689999999999864 22344433222 22345799999999999999999986
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
+
T Consensus 173 ~ 173 (174)
T cd04153 173 S 173 (174)
T ss_pred c
Confidence 4
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.8e-26 Score=162.93 Aligned_cols=149 Identities=25% Similarity=0.407 Sum_probs=114.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+.. ..++.+.+.. .+.. ...+.+.+||+||++.+...+..++..+|++|+|+|.++
T Consensus 4 i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 4 LLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred EEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 58999999999999999988754 3566554443 2323 245789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH------HHcCCeEEEeccCCCCCHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFA------EKEGLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
+.++.....|+..+.... ..+.|+++++||+|+.. ....+++.... ...+++++++||++++|++++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i 157 (160)
T cd04156 80 EARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG--ALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKL 157 (160)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc--CcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHH
Confidence 998888888777765432 25799999999999853 12233333222 1234579999999999999999998
Q ss_pred HH
Q 040835 154 LT 155 (206)
Q Consensus 154 ~~ 155 (206)
.+
T Consensus 158 ~~ 159 (160)
T cd04156 158 AS 159 (160)
T ss_pred hc
Confidence 64
No 118
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.6e-28 Score=167.13 Aligned_cols=162 Identities=31% Similarity=0.550 Sum_probs=152.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|..++||||++++++.+-|...+..+++.++....+.+.+..+.+.+||++|+++|......|+++|.+.++||+-+|
T Consensus 25 ivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD 104 (246)
T KOG4252|consen 25 IVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD 104 (246)
T ss_pred EECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc
Confidence 58999999999999999999999999999999888888888888889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+|+....|+..+.... ..+|.++|-||+|+..+..+...+++.+++.....++.+|++...||..+|..|+..+.+.
T Consensus 105 r~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 105 RYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999998777 4799999999999998899999999999999999999999999999999999999999887
Q ss_pred hhh
Q 040835 161 VSK 163 (206)
Q Consensus 161 ~~~ 163 (206)
..+
T Consensus 184 ~kq 186 (246)
T KOG4252|consen 184 KKQ 186 (246)
T ss_pred HHH
Confidence 665
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.5e-26 Score=162.50 Aligned_cols=149 Identities=25% Similarity=0.401 Sum_probs=114.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC------CCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEF------SLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAML 74 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 74 (206)
|+|++|+|||||+++|..... ...+.++.+.... .+.+ ....+.+|||||++.+...+..++..+|++++
T Consensus 4 ~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~ 79 (167)
T cd04160 4 ILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHAIIY 79 (167)
T ss_pred EEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 589999999999999986432 1223444444432 2333 35789999999999999999999999999999
Q ss_pred EeeCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-------cCCeEEEeccCCCCCH
Q 040835 75 VYDITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-------EGLCFMETSALESTNV 146 (206)
Q Consensus 75 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~v 146 (206)
|+|+++++++.....|+..+.... ..++|+++++||+|+.. .....++..+... .+++++++||++++|+
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 157 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGV 157 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCCcCH
Confidence 999999988888888877765432 35799999999999864 2334445544433 2457999999999999
Q ss_pred HHHHHHHHH
Q 040835 147 ELAFLTVLT 155 (206)
Q Consensus 147 ~~~~~~l~~ 155 (206)
++++++|.+
T Consensus 158 ~e~~~~l~~ 166 (167)
T cd04160 158 REGIEWLVE 166 (167)
T ss_pred HHHHHHHhc
Confidence 999999864
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=5.2e-26 Score=164.99 Aligned_cols=149 Identities=22% Similarity=0.319 Sum_probs=118.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|.+..+. .+.++.+.+. ..+.++ ...+.+||+||+..+...+..+++.+|++++|+|.++
T Consensus 24 ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~ 98 (190)
T cd00879 24 FLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD 98 (190)
T ss_pred EECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc
Confidence 5899999999999999987764 4555555433 233443 4778999999999998889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH----------------cCCeEEEeccCCC
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK----------------EGLCFMETSALES 143 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~ 143 (206)
.+++.....|+..+.... ..+.|+++++||+|+.. .+..+++..+... ....+++|||+++
T Consensus 99 ~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 176 (190)
T cd00879 99 PERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred HHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCC
Confidence 988888877777765533 25699999999999863 4556666666542 2246899999999
Q ss_pred CCHHHHHHHHHHH
Q 040835 144 TNVELAFLTVLTE 156 (206)
Q Consensus 144 ~~v~~~~~~l~~~ 156 (206)
+|++++|.++.+.
T Consensus 177 ~gv~e~~~~l~~~ 189 (190)
T cd00879 177 QGYGEAFRWLSQY 189 (190)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999875
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=9.3e-26 Score=159.02 Aligned_cols=148 Identities=23% Similarity=0.363 Sum_probs=111.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++++|||||+++|....+.. ..++.+.+.. .+ ++..+.+.+|||||++.+...+..++..+|++|+|+|+++
T Consensus 4 lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 78 (158)
T cd04151 4 ILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD 78 (158)
T ss_pred EECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 58999999999999998877653 4556555443 22 2346789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHH-HhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEEL-RGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++.....++..+ ......+.|+++++||+|+.... ...++..... ..+.+++++||+++.|++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 79 RDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 88877666655443 32222469999999999986422 2223222211 1234699999999999999999987
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
+
T Consensus 157 ~ 157 (158)
T cd04151 157 N 157 (158)
T ss_pred c
Confidence 5
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=5.6e-26 Score=160.07 Aligned_cols=148 Identities=23% Similarity=0.377 Sum_probs=116.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||++++++... ....++.+.+... +.+ ....+.+||+||++.+...+..++..+|++++|+|+++
T Consensus 4 iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~ 78 (158)
T cd00878 4 ILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD 78 (158)
T ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999874 4455555554433 222 35789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++.....|+..+.... ..+.|+++++||+|+.... ..++....... ..++++++||+++.|++++|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 79 RERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 999988888777765533 3578999999999986422 23333333322 245799999999999999999987
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
.
T Consensus 157 ~ 157 (158)
T cd00878 157 Q 157 (158)
T ss_pred h
Confidence 4
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=9e-26 Score=161.48 Aligned_cols=150 Identities=28% Similarity=0.467 Sum_probs=120.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.|||||||+++|..+... ...||.+.+... +.+ .+..+.+||.+|+..+...|..+++.+|++|||+|.++
T Consensus 19 ilGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd 93 (175)
T PF00025_consen 19 ILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD 93 (175)
T ss_dssp EEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG
T ss_pred EECCCccchHHHHHHhhhcccc-ccCcccccccce--eee--CcEEEEEEeccccccccccceeeccccceeEEEEeccc
Confidence 5899999999999999986653 366676666544 333 45778999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------cCCeEEEeccCCCCCHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK------EGLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
.+.+......+..+... ...++|++|++||+|+.. ....+++...... ..+.++.|||.+|+|+.+.++||
T Consensus 94 ~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 94 PERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp GGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred ceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 98888888777666543 235799999999999864 4455666554432 23458999999999999999999
Q ss_pred HHHH
Q 040835 154 LTEI 157 (206)
Q Consensus 154 ~~~i 157 (206)
.+.+
T Consensus 172 ~~~~ 175 (175)
T PF00025_consen 172 IEQI 175 (175)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9865
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=4.9e-25 Score=167.94 Aligned_cols=133 Identities=26% Similarity=0.543 Sum_probs=114.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-------------eEEEEEEEeCCCchhhhhhhHhHhc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH-------------KNVKAQIWDTAGQERYRAVTSAYYR 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~~~~~~~~~~ 67 (206)
|+|..|||||||+++|.++.+...+.+|++.++....+.++. ..+.+.||||+|++.|..++..+++
T Consensus 26 LLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr 105 (334)
T PLN00023 26 VVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYS 105 (334)
T ss_pred EECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhcc
Confidence 589999999999999999999888889988887766666542 4688999999999999999999999
Q ss_pred CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCC------------CCCcEEEEEeCCCCCcCC---C---CCHHHHHHHHH
Q 040835 68 GAVGAMLVYDITKRQSFDNVARWLEELRGHAD------------KNIIIMLVGNKSDLETLR---A---VPTEDAKEFAE 129 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~~~~~~~~ 129 (206)
++|++|+|||++++.+++.+..|+..+..... .++|++||+||+|+...+ . +..++++++++
T Consensus 106 ~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~ 185 (334)
T PLN00023 106 QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVE 185 (334)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHH
Confidence 99999999999999999999999999876531 358999999999996532 2 35788999999
Q ss_pred HcCC
Q 040835 130 KEGL 133 (206)
Q Consensus 130 ~~~~ 133 (206)
+.++
T Consensus 186 ~~g~ 189 (334)
T PLN00023 186 KQGL 189 (334)
T ss_pred HcCC
Confidence 9874
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3.5e-25 Score=159.85 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=115.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|||||||+++|.+..+.. +.|+.+.+.. .+.. .++.+.+||+||++.+...+..++..+|++|+|+|+++
T Consensus 22 ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~ 96 (184)
T smart00178 22 FLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSE--ELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD 96 (184)
T ss_pred EECCCCCCHHHHHHHHhcCCCcc-cCCccccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc
Confidence 58999999999999999876643 3455444332 2222 35789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------------cCCeEEEeccCCCCCHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK------------EGLCFMETSALESTNVE 147 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~ 147 (206)
+.++.....++..+.... ..+.|+++++||+|+.. .++.+++.+...- ....++++||++++|++
T Consensus 97 ~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~ 174 (184)
T smart00178 97 KERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYG 174 (184)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChH
Confidence 998888887777665432 25789999999999853 4455665544321 12348999999999999
Q ss_pred HHHHHHHHH
Q 040835 148 LAFLTVLTE 156 (206)
Q Consensus 148 ~~~~~l~~~ 156 (206)
++++||...
T Consensus 175 ~~~~wl~~~ 183 (184)
T smart00178 175 EGFKWLSQY 183 (184)
T ss_pred HHHHHHHhh
Confidence 999999864
No 126
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=2.9e-25 Score=156.03 Aligned_cols=149 Identities=26% Similarity=0.433 Sum_probs=117.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++|||||||+++|.+..+...+.++.+..... +.. ..+.+.+||+||++.+...+..++..+|++++|+|+++
T Consensus 4 i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 4 LVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 58999999999999999999988888887765543 222 23789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFA-----EKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
..++.....|+..+.... ..++|+++++||+|+..... ..+..... ....++++++|++++.|++++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence 988887777766654322 25789999999999864222 22222211 11245789999999999999999987
Q ss_pred H
Q 040835 155 T 155 (206)
Q Consensus 155 ~ 155 (206)
+
T Consensus 158 ~ 158 (159)
T cd04159 158 K 158 (159)
T ss_pred h
Confidence 5
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.1e-24 Score=156.57 Aligned_cols=151 Identities=23% Similarity=0.273 Sum_probs=110.0
Q ss_pred CccCCCCCHHHHHHHHhcCC-------CCCCCcc------ccceeeEEEEEEE-----CCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDE-------FSLDSKA------TIGVEFQTKTLVI-----HHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
++|.+++|||||+++|++.. +...+.+ +.+.++....... +...+.+.+|||||++.+...+
T Consensus 5 ~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 84 (179)
T cd01890 5 IIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEV 84 (179)
T ss_pred EEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHH
Confidence 58999999999999999742 1111211 1233443333222 4567889999999999999999
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe---EEEec
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC---FMETS 139 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~S 139 (206)
..+++.+|++|+|+|++++.+......|.... ..++|+++++||+|+.... .......+++..+++ ++++|
T Consensus 85 ~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~S 158 (179)
T cd01890 85 SRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVS 158 (179)
T ss_pred HHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEee
Confidence 99999999999999999876665555554322 1468999999999985421 222334556666653 89999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 040835 140 ALESTNVELAFLTVLTEI 157 (206)
Q Consensus 140 a~~~~~v~~~~~~l~~~i 157 (206)
|+++.|++++|+++.+.+
T Consensus 159 a~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 159 AKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccCCCCHHHHHHHHHhhC
Confidence 999999999999998764
No 128
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=2e-24 Score=168.02 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=114.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-------YRAVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~~i 73 (206)
|+|.||||||||+++|+.........+..+.......+.+. ....+.+||+||..+ ....+...++.++++|
T Consensus 163 lVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI 241 (335)
T PRK12299 163 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLL 241 (335)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEE
Confidence 58999999999999999865433322322222222223331 345689999999632 1222334566899999
Q ss_pred EEeeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 74 LVYDITKRQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 74 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+|+|+++.++++.+..|...+..+.. .++|+++|+||+|+.............++...+.+++++||++++|++++++
T Consensus 242 ~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 242 HLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 99999988788888889888876542 4689999999999865443333444555556678999999999999999999
Q ss_pred HHHHHHHHH
Q 040835 152 TVLTEIYRI 160 (206)
Q Consensus 152 ~l~~~i~~~ 160 (206)
++.+.+.+.
T Consensus 322 ~L~~~l~~~ 330 (335)
T PRK12299 322 ALWELLEEA 330 (335)
T ss_pred HHHHHHHhh
Confidence 999887653
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.3e-24 Score=154.50 Aligned_cols=152 Identities=20% Similarity=0.210 Sum_probs=104.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh---------hhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR---------AVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~d~ 71 (206)
++|.+|+|||||+++|++..+.....+. .+............+.+.+|||||..... .........+|+
T Consensus 5 ~~G~~~~GKssli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~ 82 (168)
T cd01897 5 IAGYPNVGKSSLVNKLTRAKPEVAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAA 82 (168)
T ss_pred EEcCCCCCHHHHHHHHhcCCCccCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCc
Confidence 5899999999999999998764332221 12222222233346789999999974210 011112234689
Q ss_pred EEEEeeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 72 AMLVYDITKRQS--FDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 72 ~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
+|+|+|+++..+ +.....|+..+.... .+.|+++++||+|+.....+. +...+....+.+++++||+++.|++++
T Consensus 83 ~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (168)
T cd01897 83 VLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGVDEV 159 (168)
T ss_pred EEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCHHHH
Confidence 999999998764 355566777775543 379999999999986533322 244555555778999999999999999
Q ss_pred HHHHHHHH
Q 040835 150 FLTVLTEI 157 (206)
Q Consensus 150 ~~~l~~~i 157 (206)
|+++.+.+
T Consensus 160 ~~~l~~~~ 167 (168)
T cd01897 160 KNKACELL 167 (168)
T ss_pred HHHHHHHh
Confidence 99998876
No 130
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=1.2e-23 Score=146.29 Aligned_cols=153 Identities=48% Similarity=0.760 Sum_probs=120.5
Q ss_pred CccCCCCCHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF-SLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|+|||||+++|.+... .....++. ................+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 689999999999999999887 44555554 5666666666667889999999999988888888999999999999999
Q ss_pred ChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH-HHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 80 KRQSFDNVARWL-EELRGHADKNIIIMLVGNKSDLETLRAVPTED-AKEFAEKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 80 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++.+...+..|. .........++|+++++||+|+.......... ..........+++++|+.++.|+.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888887762 22333344689999999999986533332222 3444555678999999999999999999875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.4e-24 Score=154.65 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=106.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch----hhhhhhHhH---hcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE----RYRAVTSAY---YRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~---~~~~d~~i 73 (206)
|+|.+|||||||+++|.+........+..+.......+...+ ...+.+|||||.. .+..+...+ +..+|+++
T Consensus 5 ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi 83 (170)
T cd01898 5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLL 83 (170)
T ss_pred EECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEE
Confidence 589999999999999997654322212111111111222222 2479999999963 222223333 45699999
Q ss_pred EEeeCCCh-hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHH
Q 040835 74 LVYDITKR-QSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-EGLCFMETSALESTNVELA 149 (206)
Q Consensus 74 ~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~ 149 (206)
+|+|++++ .++..+..|...+..... ..+|+++|+||+|+...... .+....+... .+.+++++|++++.|++++
T Consensus 84 ~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 84 HVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDEL 162 (170)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence 99999998 788888888888766532 36899999999998653332 3344455555 3678999999999999999
Q ss_pred HHHHHHH
Q 040835 150 FLTVLTE 156 (206)
Q Consensus 150 ~~~l~~~ 156 (206)
|+++.+.
T Consensus 163 ~~~i~~~ 169 (170)
T cd01898 163 LRKLAEL 169 (170)
T ss_pred HHHHHhh
Confidence 9998864
No 132
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.1e-23 Score=148.15 Aligned_cols=147 Identities=17% Similarity=0.145 Sum_probs=108.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhHhc--CCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA------VTSAYYR--GAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~d~~ 72 (206)
|+|.+|+|||||+++|.+..+.....+..+.......+.+++ ..+.+|||||+..+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 689999999999999999865554444444444444455543 5789999999876553 3455564 99999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|+++.+... .|...+.. .++|+++++||+|+.....+. .....+....+.+++++|+++++|+++++.+
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998765422 33333333 468999999999996544333 2345677777899999999999999999999
Q ss_pred HHHH
Q 040835 153 VLTE 156 (206)
Q Consensus 153 l~~~ 156 (206)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8875
No 133
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=1.1e-23 Score=142.32 Aligned_cols=153 Identities=20% Similarity=0.335 Sum_probs=121.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..||||||++++|.+... ....|+.++++.. +....+.+.+||.+|+..++..|+.||..+|++|+|+|.+|
T Consensus 21 iLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Ikt----l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD 95 (185)
T KOG0073|consen 21 ILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKT----LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD 95 (185)
T ss_pred EEecCCCCchhHHHHhcCCCc-cccCCccceeeEE----EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch
Confidence 579999999999999999874 4555666665544 33456889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCcCCCCCHHH------HHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRG-HADKNIIIMLVGNKSDLETLRAVPTED------AKEFAEKEGLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
+..++.-...+..+.. ..-.+.|++|++||.|+.. .+..++ +..+++...++++-||+.+|+++.+.+.|+
T Consensus 96 ~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 96 RMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWL 173 (185)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHH
Confidence 9888776665554432 2225689999999999863 223322 445556678899999999999999999999
Q ss_pred HHHHHHH
Q 040835 154 LTEIYRI 160 (206)
Q Consensus 154 ~~~i~~~ 160 (206)
.+.+.+.
T Consensus 174 ~~~l~~r 180 (185)
T KOG0073|consen 174 CDDLMSR 180 (185)
T ss_pred HHHHHHH
Confidence 9998873
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.92 E-value=5.4e-24 Score=156.10 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=106.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER---------YRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~ 71 (206)
|+|++|||||||+++|++..+.....+..+.......+.+++. ..+.+|||||... +...+ ..+..+|+
T Consensus 46 iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ 123 (204)
T cd01878 46 LVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADL 123 (204)
T ss_pred EECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCe
Confidence 5899999999999999998654332222222222233333332 3789999999722 22221 23678999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.++.....|...+......+.|+++|+||+|+...... .......+.+++++||+++.|++++++
T Consensus 124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 124 LLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred EEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCCHHHHHH
Confidence 999999999888877777777766655457899999999998642221 134445567899999999999999999
Q ss_pred HHHHH
Q 040835 152 TVLTE 156 (206)
Q Consensus 152 ~l~~~ 156 (206)
+|.+.
T Consensus 199 ~L~~~ 203 (204)
T cd01878 199 AIEEL 203 (204)
T ss_pred HHHhh
Confidence 98765
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=9.2e-24 Score=149.41 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=100.0
Q ss_pred CccCCCCCHHHHHHHHhcCC---CCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARDE---FSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 77 (206)
|+|.+|||||||+++|.+.. +.....++.+.........+.. ...+.+|||||++.+......++..+|++++|+|
T Consensus 5 i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d 83 (164)
T cd04171 5 TAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVA 83 (164)
T ss_pred EEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEE
Confidence 58999999999999999743 2222222223333333333332 4679999999999887777778899999999999
Q ss_pred CCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHH---cCCeEEEeccCCCCCHHHH
Q 040835 78 ITK---RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEK---EGLCFMETSALESTNVELA 149 (206)
Q Consensus 78 ~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~ 149 (206)
+++ .++...+. .+... ...|+++++||+|+..... ...++..+.... .+.+++++||++++|++++
T Consensus 84 ~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (164)
T cd04171 84 ADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL 157 (164)
T ss_pred CCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence 987 33332222 22221 1248999999999864211 112334444444 3578999999999999999
Q ss_pred HHHHHH
Q 040835 150 FLTVLT 155 (206)
Q Consensus 150 ~~~l~~ 155 (206)
|..+..
T Consensus 158 ~~~l~~ 163 (164)
T cd04171 158 KEYLDE 163 (164)
T ss_pred HHHHhh
Confidence 988753
No 136
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=3.8e-23 Score=144.89 Aligned_cols=152 Identities=34% Similarity=0.489 Sum_probs=119.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+|+|||||+++|....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++.++|...
T Consensus 6 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~ 85 (161)
T TIGR00231 6 IVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVI 85 (161)
T ss_pred EECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEee
Confidence 58999999999999999998777777777777766666777666889999999999999889999999999999999987
Q ss_pred h-hhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 040835 81 R-QSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 81 ~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
. .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.++.|+.++|++|
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 86 LVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred eehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 6 5555544 56666655543478999999999986533 23333333333345679999999999999999886
No 137
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=1.7e-23 Score=149.49 Aligned_cols=145 Identities=23% Similarity=0.365 Sum_probs=109.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+. ...++.+.+.. .+..+ ...+.+||++|+..+...+..+++.+|++++|+|+++
T Consensus 19 i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~ 93 (173)
T cd04155 19 ILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD 93 (173)
T ss_pred EEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC
Confidence 5899999999999999987663 34455554433 33333 4678999999999988888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC--------eEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL--------CFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~~v~~~~~ 151 (206)
..++.....++..+... ....+|+++++||+|+.... ..++ +....++ +++++||++++|++++|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 94 KKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEE---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHH---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 88888777766655433 23569999999999985422 2222 2233332 478999999999999999
Q ss_pred HHHH
Q 040835 152 TVLT 155 (206)
Q Consensus 152 ~l~~ 155 (206)
||.+
T Consensus 169 ~l~~ 172 (173)
T cd04155 169 WVCK 172 (173)
T ss_pred HHhc
Confidence 9874
No 138
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=1e-22 Score=150.91 Aligned_cols=164 Identities=40% Similarity=0.560 Sum_probs=132.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+.|||||||+++|....+...+.++.+..+...........+.+.+|||+|++++..++..++.+++++++++|..+
T Consensus 10 v~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~ 89 (219)
T COG1100 10 VLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL 89 (219)
T ss_pred EEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence 58999999999999999999999999887777776666666568899999999999999999999999999999999999
Q ss_pred hh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHc---CCeEEEeccC--C
Q 040835 81 RQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR------------AVPTEDAKEFAEKE---GLCFMETSAL--E 142 (206)
Q Consensus 81 ~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~Sa~--~ 142 (206)
.. ..+....|+..+........|+++++||+|+.... .............. ...++++|++ .
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 169 (219)
T COG1100 90 RESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLT 169 (219)
T ss_pred chhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCC
Confidence 55 55566789988888776679999999999996542 22222222222222 3348999999 9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhh
Q 040835 143 STNVELAFLTVLTEIYRIVSKK 164 (206)
Q Consensus 143 ~~~v~~~~~~l~~~i~~~~~~~ 164 (206)
+.+++++|..++..+.+.....
T Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 170 GPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred CcCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999997765444
No 139
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=1.1e-23 Score=150.65 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=105.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh----hhh---hHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY----RAV---TSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i 73 (206)
|+|++|||||||+++|.+........+..+.......+..+ ....+.+|||||.... ..+ ....++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 68999999999999999986522211111111222222222 1567899999996321 112 234577899999
Q ss_pred EEeeCCCh------hhHHHHHHHHHHHHhcCC-------CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEecc
Q 040835 74 LVYDITKR------QSFDNVARWLEELRGHAD-------KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 74 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
+|+|+++. .++..+..|...+..... .+.|+++++||+|+..................+.+++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777777654432 36999999999998653333322223344445678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 040835 141 LESTNVELAFLTVLTE 156 (206)
Q Consensus 141 ~~~~~v~~~~~~l~~~ 156 (206)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988764
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=8.4e-24 Score=146.42 Aligned_cols=131 Identities=24% Similarity=0.210 Sum_probs=96.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch-----hhhhhhHhHhcCCcEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE-----RYRAVTSAYYRGAVGAMLV 75 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~i~v 75 (206)
++|++|||||||+++|.+..+. +.++.+. .+. -.+|||||.. .+..+. ..++++|++|+|
T Consensus 5 liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv 69 (142)
T TIGR02528 5 FIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVIALV 69 (142)
T ss_pred EECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEEEEE
Confidence 5899999999999999987652 2222211 111 1689999972 233333 358999999999
Q ss_pred eeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHHH
Q 040835 76 YDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 76 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+|++++.++.. ..|...+ ..|+++++||+|+.+ +....++..++++..+. +++++||+++.|++++|.++.
T Consensus 70 ~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 70 QSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 99999887644 2343321 249999999999864 34456667777877776 799999999999999998874
No 141
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.6e-23 Score=145.09 Aligned_cols=152 Identities=20% Similarity=0.368 Sum_probs=126.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..++||||++.+|....+... .||+|.+.+...+. ++.+.+||.+|++.++.+|..|+++.+++|||+|.+|
T Consensus 22 mlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D 96 (181)
T KOG0070|consen 22 MVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred EEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc
Confidence 589999999999999998888665 89989888875543 7999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-----CCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-----GLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++.+..++..+..+..... .+.|+++++||.|+.. .++..++.+...-. ...+..|+|.+|+|+.+.++|+.
T Consensus 97 r~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~ 174 (181)
T KOG0070|consen 97 RERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLS 174 (181)
T ss_pred HHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHH
Confidence 9999988877766655443 6899999999999864 34444444443332 34588899999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+..
T Consensus 175 ~~~~~ 179 (181)
T KOG0070|consen 175 NNLKK 179 (181)
T ss_pred HHHhc
Confidence 87754
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=3.1e-23 Score=147.40 Aligned_cols=153 Identities=15% Similarity=0.145 Sum_probs=105.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|+|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+...+...+..+|++++|+|++
T Consensus 5 iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~ 84 (168)
T cd01887 5 VMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAAD 84 (168)
T ss_pred EEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECC
Confidence 58999999999999999988766544433333333333332 13578999999999999888888999999999999998
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHH----H--cCCeEEEeccCCCCCHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP-TEDAKEFAE----K--EGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~----~--~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
+....... ..+..+.. .++|+++++||+|+....... ......+.. . ..++++++|+++++|+.+++++
T Consensus 85 ~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T cd01887 85 DGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEA 160 (168)
T ss_pred CCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHH
Confidence 74321111 11222222 468999999999986321100 111111111 1 1357999999999999999999
Q ss_pred HHHHH
Q 040835 153 VLTEI 157 (206)
Q Consensus 153 l~~~i 157 (206)
+.+..
T Consensus 161 l~~~~ 165 (168)
T cd01887 161 ILLLA 165 (168)
T ss_pred HHHhh
Confidence 98764
No 143
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-22 Score=135.66 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=135.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC--CccccceeeEEEEEEE-CCeEEEEEEEeCCCchhh-hhhhHhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD--SKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERY-RAVTSAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~i~v~ 76 (206)
|+|..++|||++++.|+.....+. ..+|+. +++...+.. .+....+.++||.|...+ ..+-+.|+.-+|++++||
T Consensus 14 VcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVY 92 (198)
T KOG3883|consen 14 VCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVY 92 (198)
T ss_pred EECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEe
Confidence 589999999999999987665544 345533 333333333 345567999999997766 667788999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 77 DITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 77 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+..|++||..+..+...+.... ...+|++|++||+|+.+.++++.+.+..|++.-.+..+++++.+...+-+.|..+..
T Consensus 93 s~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~ 172 (198)
T KOG3883|consen 93 SPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLAS 172 (198)
T ss_pred cCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHH
Confidence 9999999988766666665544 367999999999999888899999999999999999999999999999999999998
Q ss_pred HHHHHhhhhhcccC
Q 040835 156 EIYRIVSKKALTAN 169 (206)
Q Consensus 156 ~i~~~~~~~~~~~~ 169 (206)
.+...+.++.....
T Consensus 173 rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 173 RLHQPQSKSTFPLS 186 (198)
T ss_pred hccCCcccccCcch
Confidence 88877666554433
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=1.3e-22 Score=157.71 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=108.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh----hhhhH---hHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY----RAVTS---AYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~d~~i 73 (206)
|+|.||||||||+++|..........+..+.......+.++. ...+.+||+||..+. ..+.. ..+..+++++
T Consensus 162 lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll 240 (329)
T TIGR02729 162 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLL 240 (329)
T ss_pred EEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEE
Confidence 689999999999999998654332222222222222333332 367899999997421 12223 3355799999
Q ss_pred EEeeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 74 LVYDITKR---QSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 74 ~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
+|+|+++. ++++.+..|...+..+.. .+.|+++|+||+|+..... ..+....+.+..+.+++++||++++|+++
T Consensus 241 ~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 241 HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDE 319 (329)
T ss_pred EEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHH
Confidence 99999976 567777778777765432 4689999999999865322 23344555666678899999999999999
Q ss_pred HHHHHHHHH
Q 040835 149 AFLTVLTEI 157 (206)
Q Consensus 149 ~~~~l~~~i 157 (206)
++.++.+.+
T Consensus 320 L~~~I~~~l 328 (329)
T TIGR02729 320 LLYALAELL 328 (329)
T ss_pred HHHHHHHHh
Confidence 999998754
No 145
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=141.02 Aligned_cols=159 Identities=28% Similarity=0.568 Sum_probs=140.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|++..|||||+-++.++.+...+..+.|.++..+.+.+.+..+.+.|||.+|++++..+.+....++-++++++|++.
T Consensus 25 llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~ 104 (205)
T KOG1673|consen 25 LLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR 104 (205)
T ss_pred eecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc
Confidence 58999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-----CCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET-----LRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+.++..+..|+.+.+...+..+|+ +|++|.|+-- .++....+.+.+++..++++|++|+..+.||+.+|..++.
T Consensus 105 r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlA 183 (205)
T KOG1673|consen 105 RSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLA 183 (205)
T ss_pred hHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHH
Confidence 999999999999988776666776 6799999621 1112234467888888999999999999999999999998
Q ss_pred HHHHH
Q 040835 156 EIYRI 160 (206)
Q Consensus 156 ~i~~~ 160 (206)
.++..
T Consensus 184 klFnL 188 (205)
T KOG1673|consen 184 KLFNL 188 (205)
T ss_pred HHhCC
Confidence 87754
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=4.3e-23 Score=150.16 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=102.7
Q ss_pred CccCCCCCHHHHHHHHhc--CCCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFAR--DEFSLDS------------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|.+++|||||+++|+. ..+.... ..+.+.++......+.+....+.+|||||++.|...+..++
T Consensus 7 ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 86 (194)
T cd01891 7 IIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVL 86 (194)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence 589999999999999997 4443332 12234555555555666678899999999999999999999
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHHH-------HcCCeEEEe
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAKEFAE-------KEGLCFMET 138 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~~~~~ 138 (206)
+.+|++++|+|+++.. ......++..+.. .++|+++++||+|+...+. ...+++..+.. ..+++++++
T Consensus 87 ~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 162 (194)
T cd01891 87 SMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYA 162 (194)
T ss_pred HhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEe
Confidence 9999999999998742 2222333333332 4689999999999864221 11233444442 236789999
Q ss_pred ccCCCCCHHHH
Q 040835 139 SALESTNVELA 149 (206)
Q Consensus 139 Sa~~~~~v~~~ 149 (206)
||++|.|+.+.
T Consensus 163 Sa~~g~~~~~~ 173 (194)
T cd01891 163 SAKNGWASLNL 173 (194)
T ss_pred ehhcccccccc
Confidence 99999887544
No 147
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.4e-22 Score=142.32 Aligned_cols=146 Identities=17% Similarity=0.101 Sum_probs=98.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA--------VTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~ 71 (206)
++|.+|+|||||+++|++..... ...+..+.......... .+..+.+|||||...+.. .+...++.+|+
T Consensus 2 l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW--GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred ccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE--CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 68999999999999999875321 11222122222223333 346789999999876433 34456789999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAF 150 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~ 150 (206)
+++|+|..+..+.... .+...+.. .+.|+++++||+|+..... . .......+. +++++|++++.|++++|
T Consensus 80 ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 80 ILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEED----E-AAEFYSLGFGEPIPISAEHGRGIGDLL 150 (157)
T ss_pred EEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHH----H-HHHHHhcCCCCeEEEecccCCCHHHHH
Confidence 9999999875433322 12222322 3599999999999864221 1 233344565 78999999999999999
Q ss_pred HHHHHHH
Q 040835 151 LTVLTEI 157 (206)
Q Consensus 151 ~~l~~~i 157 (206)
+++.+.+
T Consensus 151 ~~l~~~~ 157 (157)
T cd01894 151 DAILELL 157 (157)
T ss_pred HHHHhhC
Confidence 9998753
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.6e-22 Score=154.18 Aligned_cols=149 Identities=18% Similarity=0.151 Sum_probs=100.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEE-EEEEECCeEEEEEEEeCCCchhh--------hhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQT-KTLVIHHKNVKAQIWDTAGQERY--------RAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~d~ 71 (206)
|+|.+|||||||+|+|++..+...+..+ +++... ..+... .+..+.+|||||.... ......++..+|+
T Consensus 5 liG~pnvGKSTLln~L~~~~~~~vs~~~-~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDv 82 (270)
T TIGR00436 5 ILGRPNVGKSTLLNQLHGQKISITSPKA-QTTRNRISGIHTT-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDL 82 (270)
T ss_pred EECCCCCCHHHHHHHHhCCcEeecCCCC-CcccCcEEEEEEc-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCE
Confidence 5899999999999999998765433222 122222 222222 2356899999996432 1123456789999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAF 150 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~ 150 (206)
+++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..... .......+....+. +++++||+++.|+++++
T Consensus 83 vl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 83 ILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred EEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999876543 334444433 4689999999999863221 12233444444444 79999999999999999
Q ss_pred HHHHHHH
Q 040835 151 LTVLTEI 157 (206)
Q Consensus 151 ~~l~~~i 157 (206)
+++.+.+
T Consensus 157 ~~l~~~l 163 (270)
T TIGR00436 157 AFIEVHL 163 (270)
T ss_pred HHHHHhC
Confidence 9987765
No 149
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=3.8e-23 Score=137.28 Aligned_cols=149 Identities=26% Similarity=0.457 Sum_probs=121.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..++|||||+|....+.+...-.|+.|++... +....+.+.+||.||+..|..+|..|++.+++++||+|+.+
T Consensus 25 lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad 100 (186)
T KOG0075|consen 25 LVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD 100 (186)
T ss_pred EEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC
Confidence 58999999999999999989988888998877765 33567899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHH-hcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--------CeEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELR-GHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG--------LCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v~~~~~ 151 (206)
++.+...+.-+..+. +..-.+.|++|++||.|+.. .++.. .+..+.| +.+|.+|+++..|++-+.+
T Consensus 101 ~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~---~li~rmgL~sitdREvcC~siScke~~Nid~~~~ 175 (186)
T KOG0075|consen 101 PDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNIDITLD 175 (186)
T ss_pred cccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHH---HHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence 988877766555443 33347899999999999863 33332 3333333 4589999999999999999
Q ss_pred HHHHHHH
Q 040835 152 TVLTEIY 158 (206)
Q Consensus 152 ~l~~~i~ 158 (206)
|++++-.
T Consensus 176 Wli~hsk 182 (186)
T KOG0075|consen 176 WLIEHSK 182 (186)
T ss_pred HHHHHhh
Confidence 9998753
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.89 E-value=4.1e-23 Score=151.12 Aligned_cols=146 Identities=23% Similarity=0.227 Sum_probs=99.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-----------chhhhhhhHhHhc--
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG-----------QERYRAVTSAYYR-- 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~-- 67 (206)
++|.+|||||||+++|.+..+.....++ .+.....+... .+.+||||| .+.+...+..++.
T Consensus 14 i~G~~~~GKSsLin~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T PRK04213 14 FVGRSNVGKSTLVRELTGKKVRVGKRPG--VTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDN 87 (201)
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCc--eeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999998765544443 34443333322 589999999 4566666666654
Q ss_pred --CCcEEEEEeeCCChhhH-H---------HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC--
Q 040835 68 --GAVGAMLVYDITKRQSF-D---------NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-- 133 (206)
Q Consensus 68 --~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 133 (206)
.++++++|+|.++...+ + ....++..+.. .++|+++|+||+|+.... .+...++....++
T Consensus 88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYP 161 (201)
T ss_pred hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCc
Confidence 45788889988653221 0 01112222222 479999999999985422 3345555665554
Q ss_pred -------eEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 134 -------CFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 134 -------~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++++||+++ |++++|++|.+.+..
T Consensus 162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred cccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 5899999999 999999999987644
No 151
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=4.2e-22 Score=156.19 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=104.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ---------ERYRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~ 71 (206)
++|.+|||||||+|+|++..+.....+..+.+.....+.+++ ...+.+|||+|. +.|... ...+.++|+
T Consensus 194 lvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~~~ADl 271 (351)
T TIGR03156 194 LVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEEVREADL 271 (351)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHHHHhCCE
Confidence 589999999999999999875433322223344444555532 357899999997 223332 235789999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.+......|...+......+.|+++|+||+|+... .+...+. ....+++++||+++.|++++++
T Consensus 272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-----~~v~~~~-~~~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 272 LLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-----PRIERLE-EGYPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-----HhHHHHH-hCCCCEEEEEccCCCCHHHHHH
Confidence 999999999887777766666665544457899999999998642 1222221 2234689999999999999999
Q ss_pred HHHHH
Q 040835 152 TVLTE 156 (206)
Q Consensus 152 ~l~~~ 156 (206)
++.+.
T Consensus 346 ~I~~~ 350 (351)
T TIGR03156 346 AIAER 350 (351)
T ss_pred HHHhh
Confidence 88764
No 152
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.89 E-value=1.3e-22 Score=140.34 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=98.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh------hhhhhHhHh--cCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER------YRAVTSAYY--RGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~~~d~~ 72 (206)
++|.||||||||+|+|++........|. .|.......+...+..+.++|+||... .......++ ...|++
T Consensus 5 lvG~PNvGKStLfN~Ltg~~~~v~n~pG--~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~i 82 (156)
T PF02421_consen 5 LVGNPNVGKSTLFNALTGAKQKVGNWPG--TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLI 82 (156)
T ss_dssp EEESTTSSHHHHHHHHHTTSEEEEESTT--SSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEE
T ss_pred EECCCCCCHHHHHHHHHCCCceecCCCC--CCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEE
Confidence 5899999999999999998865544454 444444433333347899999999422 223334444 689999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|+++.+. -..+..++.. .++|+++++||+|......+.. +...+.+..|+|++.+||++++|++++++.
T Consensus 83 i~VvDa~~l~r---~l~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 83 IVVVDATNLER---NLYLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDELKDA 155 (156)
T ss_dssp EEEEEGGGHHH---HHHHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHHHHH
T ss_pred EEECCCCCHHH---HHHHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHHHhh
Confidence 99999987432 2223333443 4699999999999865444332 467788888999999999999999999876
Q ss_pred H
Q 040835 153 V 153 (206)
Q Consensus 153 l 153 (206)
|
T Consensus 156 I 156 (156)
T PF02421_consen 156 I 156 (156)
T ss_dssp H
T ss_pred C
Confidence 5
No 153
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.5e-21 Score=154.34 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=109.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhH---hcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER----YRAVTSAY---YRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d~~i 73 (206)
|+|.||||||||+++|++........+..+.......+.++ ....+.+||+||... ...+...+ +..++++|
T Consensus 163 lVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI 241 (424)
T PRK12297 163 LVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIV 241 (424)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEE
Confidence 58999999999999999876433322222222222222222 146799999999642 22233333 55699999
Q ss_pred EEeeCCCh---hhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 74 LVYDITKR---QSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 74 ~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
+|+|+++. ++++....|...+..+.. .++|++||+||+|+.. ..+....+.+..+.+++++||++++|+++
T Consensus 242 ~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeGI~e 317 (424)
T PRK12297 242 HVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQGLDE 317 (424)
T ss_pred EEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCCHHH
Confidence 99999864 566777777777765432 4789999999999843 23445666666678899999999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 149 AFLTVLTEIYRI 160 (206)
Q Consensus 149 ~~~~l~~~i~~~ 160 (206)
+++++.+.+.+.
T Consensus 318 L~~~L~~~l~~~ 329 (424)
T PRK12297 318 LLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHhC
Confidence 999998877554
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1e-21 Score=142.08 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=108.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcccc--------------ceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATI--------------GVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
|+|.+|+|||||+++|++........... +.+..............+.+|||||...+...+..++
T Consensus 4 v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 83 (189)
T cd00881 4 IAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGL 83 (189)
T ss_pred EEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHH
Confidence 58999999999999999877655432211 1222222223333457899999999998888889999
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHH--------------
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAEK-------------- 130 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~-------------- 130 (206)
+.+|++++|+|++++.... ...++..+.. .+.|+++++||+|+...... ..+++.+..+.
T Consensus 84 ~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 84 SVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred HhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 9999999999998765432 2233333333 47999999999998642221 12333333333
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 131 EGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 131 ~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
...+++++||+++.|+++++.++.+.+
T Consensus 160 ~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 160 LLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246799999999999999999998875
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=1.4e-21 Score=157.43 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=106.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh--------hHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV--------TSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~ 71 (206)
++|++|||||||+|+|++..... ...+..+.+.....+.++ +..+.+|||||...+... ...+++.+|+
T Consensus 208 IvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~ 285 (442)
T TIGR00450 208 IVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADL 285 (442)
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCE
Confidence 58999999999999999875432 222332333333444444 456799999998554322 2457889999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.++... |+..+.. .++|+++|+||+|+... +...++...+.+++++|+++ .||+++|+
T Consensus 286 il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~ 353 (442)
T TIGR00450 286 VIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKALVD 353 (442)
T ss_pred EEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHHHH
Confidence 9999999988776654 6555432 46899999999998542 22345566778899999998 69999999
Q ss_pred HHHHHHHHHh
Q 040835 152 TVLTEIYRIV 161 (206)
Q Consensus 152 ~l~~~i~~~~ 161 (206)
.+.+.+.+..
T Consensus 354 ~L~~~i~~~~ 363 (442)
T TIGR00450 354 LLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 156
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=1.3e-21 Score=137.34 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=100.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA--------VTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d~ 71 (206)
++|++|+|||||++++++..... ...+............. ....+.+|||||...+.. .....+..+|+
T Consensus 6 l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (157)
T cd04164 6 IVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI--GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADL 83 (157)
T ss_pred EECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe--CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCE
Confidence 58999999999999999876432 12222222222223332 346789999999754422 12346779999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.+......+.. ....|+++++||+|+...... .....+.+++++||+++.|++++++
T Consensus 84 ~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 84 VLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 999999998776655544322 246999999999998653322 3444567899999999999999999
Q ss_pred HHHHHH
Q 040835 152 TVLTEI 157 (206)
Q Consensus 152 ~l~~~i 157 (206)
++.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 987654
No 157
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-21 Score=127.88 Aligned_cols=150 Identities=25% Similarity=0.439 Sum_probs=121.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..++||||++.+|..+.. ....||+|+++..++ ..++.|.+||.+|++..+..|+.|+.+..++|||+|..+
T Consensus 22 mlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 22 MLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred EEecccCCceehhhHHhcCCC-cccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc
Confidence 479999999999999988665 556678788777644 468999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-----CCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-----GLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++.++.++..+..+.... -..+|++|.+||.|+.. ....+++..+.+-. ...+..+++.++.|+.+-|.|+.
T Consensus 97 ~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswls 174 (180)
T KOG0071|consen 97 RDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLS 174 (180)
T ss_pred hhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHH
Confidence 988888877555544332 36799999999999974 44566666655432 23578899999999999999998
Q ss_pred HHH
Q 040835 155 TEI 157 (206)
Q Consensus 155 ~~i 157 (206)
+.+
T Consensus 175 nn~ 177 (180)
T KOG0071|consen 175 NNL 177 (180)
T ss_pred hhc
Confidence 754
No 158
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=2.1e-21 Score=152.02 Aligned_cols=147 Identities=24% Similarity=0.339 Sum_probs=99.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceee--EEEEEEECCeEEEEEEEeCCCchh-hhhh-------hHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEF--QTKTLVIHHKNVKAQIWDTAGQER-YRAV-------TSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~~~~~~~~d 70 (206)
++|.+|||||||+|+|++..+..... ..+++. ....+..+ +..+.+|||||... +..+ ....+..+|
T Consensus 57 ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~~~--~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aD 133 (339)
T PRK15494 57 IIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIITLK--DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSAD 133 (339)
T ss_pred EEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEEeC--CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCC
Confidence 58999999999999999987753222 212222 22233333 45789999999742 2211 223478999
Q ss_pred EEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCHH
Q 040835 71 GAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG--LCFMETSALESTNVE 147 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~ 147 (206)
++++|+|..+. +... ..|+..+.. .+.|.++|+||+|+... ...++.+++...+ ..+|++||+++.|++
T Consensus 134 vil~VvD~~~s--~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 134 LVLLIIDSLKS--FDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNID 205 (339)
T ss_pred EEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHH
Confidence 99999997653 3333 335444443 34677889999998542 2445555555543 579999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 148 LAFLTVLTEIY 158 (206)
Q Consensus 148 ~~~~~l~~~i~ 158 (206)
++|+++...+.
T Consensus 206 eL~~~L~~~l~ 216 (339)
T PRK15494 206 GLLEYITSKAK 216 (339)
T ss_pred HHHHHHHHhCC
Confidence 99999887654
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.7e-21 Score=158.96 Aligned_cols=149 Identities=23% Similarity=0.206 Sum_probs=101.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE--------RYRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++....... .+.+.+...........+..+.+|||||.+ .+...+..+++.+|++
T Consensus 43 IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~i 121 (472)
T PRK03003 43 VVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAV 121 (472)
T ss_pred EEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999987653222 222344333333333334568999999975 2344566778999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 151 (206)
|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... .+....+ ..++ .++++||++|.|++++|+
T Consensus 122 l~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 122 LFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGVGDLLD 192 (472)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHH
Confidence 99999998765432 234344433 469999999999985311 1111222 2333 357999999999999999
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
++++.+.+
T Consensus 193 ~i~~~l~~ 200 (472)
T PRK03003 193 AVLAALPE 200 (472)
T ss_pred HHHhhccc
Confidence 99988754
No 160
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=1.3e-21 Score=131.39 Aligned_cols=111 Identities=33% Similarity=0.595 Sum_probs=85.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCC--CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS--LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 78 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 78 (206)
|+|++|||||||+++|++.... ....+..+.+..............+.+||++|.+.+...+..++..+|++|+|||+
T Consensus 4 V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~ 83 (119)
T PF08477_consen 4 VLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDL 83 (119)
T ss_dssp EECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEEC
T ss_pred EECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcC
Confidence 6899999999999999998876 22233334455555566677777799999999999988888889999999999999
Q ss_pred CChhhHHHHHHH---HHHHHhcCCCCCcEEEEEeCCC
Q 040835 79 TKRQSFDNVARW---LEELRGHADKNIIIMLVGNKSD 112 (206)
Q Consensus 79 ~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 112 (206)
++++++..+..+ +..+.... .++|+++|+||.|
T Consensus 84 s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 84 SDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp CGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred CChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999887554 55555433 4699999999998
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.87 E-value=1.8e-21 Score=136.90 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=96.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch----hhhhhhHhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE----RYRAVTSAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i~v~ 76 (206)
++|.+|+|||||+|+|.+.... ...+. .+.+... .+|||||.. .+.......+..+|++++|+
T Consensus 6 ~iG~~~~GKstl~~~l~~~~~~--~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~ 72 (158)
T PRK15467 6 FVGAVGAGKTTLFNALQGNYTL--ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVH 72 (158)
T ss_pred EECCCCCCHHHHHHHHcCCCcc--Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEE
Confidence 5899999999999998865321 11111 1122222 269999962 22222233478999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC--eEEEeccCCCCCHHHHHHHHH
Q 040835 77 DITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL--CFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 77 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
|+++..++ +..|+..+ ..+.|+++++||+|+.. ...+...+++.+.+. +++++||++++|++++|..+.
T Consensus 73 d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~ 143 (158)
T PRK15467 73 GANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA 143 (158)
T ss_pred eCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence 99987654 22343332 13678999999999853 245566777777774 899999999999999999998
Q ss_pred HHHHHH
Q 040835 155 TEIYRI 160 (206)
Q Consensus 155 ~~i~~~ 160 (206)
+.+.+.
T Consensus 144 ~~~~~~ 149 (158)
T PRK15467 144 SLTKQE 149 (158)
T ss_pred Hhchhh
Confidence 776544
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=5e-21 Score=159.18 Aligned_cols=152 Identities=21% Similarity=0.249 Sum_probs=111.8
Q ss_pred CccCCCCCHHHHHHHHhcCC-------CCCCCcc------ccceeeEEEEEEE-----CCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDE-------FSLDSKA------TIGVEFQTKTLVI-----HHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
++|+.++|||||+++|+... +...+.. ..|.++....+.+ ++..+.+.+|||||+..|...+
T Consensus 8 IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v 87 (595)
T TIGR01393 8 IIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEV 87 (595)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHH
Confidence 58999999999999998742 1112211 2255555444433 3456889999999999999999
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC---eEEEec
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL---CFMETS 139 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~S 139 (206)
..++..+|++|+|+|+++..+......|...+. .++|+++++||+|+.... ......++...+++ .++++|
T Consensus 88 ~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vS 161 (595)
T TIGR01393 88 SRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILAS 161 (595)
T ss_pred HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEee
Confidence 999999999999999998766655555544332 368999999999985311 12233455555565 389999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 040835 140 ALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 140 a~~~~~v~~~~~~l~~~i~ 158 (206)
|+++.|++++|+++.+.+.
T Consensus 162 AktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 162 AKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred ccCCCCHHHHHHHHHHhCC
Confidence 9999999999999987653
No 163
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=8.2e-21 Score=152.15 Aligned_cols=154 Identities=19% Similarity=0.139 Sum_probs=105.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh--hhh------hHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY--RAV------TSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~------~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++..+.....+..+.+.....+.+.+ ...+.+|||+|.... ... +...+..+|++
T Consensus 202 lVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlI 280 (426)
T PRK11058 202 LVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLL 280 (426)
T ss_pred EECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEE
Confidence 589999999999999998766433333323333333444433 236789999997321 111 23446899999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC-FMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~ 151 (206)
|+|+|++++.+...+..|...+......++|+++|+||+|+..... .... ....+.+ ++.+||++|+|++++++
T Consensus 281 L~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 281 LHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHHHHHH
Confidence 9999999988777765555545544445799999999999853211 1111 1123555 58899999999999999
Q ss_pred HHHHHHHHH
Q 040835 152 TVLTEIYRI 160 (206)
Q Consensus 152 ~l~~~i~~~ 160 (206)
++.+.+...
T Consensus 356 ~I~~~l~~~ 364 (426)
T PRK11058 356 ALTERLSGE 364 (426)
T ss_pred HHHHHhhhc
Confidence 999888554
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=2.1e-21 Score=157.04 Aligned_cols=143 Identities=20% Similarity=0.198 Sum_probs=102.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh--------hHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV--------TSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~ 71 (206)
++|.+|+|||||+|+|++..... ...+..+.+.....+.++ +..+.+|||||.+.+... ...++..+|+
T Consensus 220 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~ 297 (449)
T PRK05291 220 IAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADL 297 (449)
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999976532 222322333333344444 467899999998654321 2346889999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.++.....|.. ..+.|+++|+||+|+....... ...+.+++++||+++.|++++++
T Consensus 298 il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 298 VLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred EEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHH
Confidence 999999998877665444432 2468999999999986422211 33456799999999999999999
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
++.+.+..
T Consensus 364 ~L~~~l~~ 371 (449)
T PRK05291 364 AIKELAFG 371 (449)
T ss_pred HHHHHHhh
Confidence 99988754
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.7e-21 Score=157.85 Aligned_cols=153 Identities=24% Similarity=0.189 Sum_probs=103.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCc----------hhhhhhh-HhHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ----------ERYRAVT-SAYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~-~~~~~~ 68 (206)
|+|.+|||||||+++|++.... ....++.+.+.....+.+++ ..+.+|||||. +.+.... ..+++.
T Consensus 216 iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ 293 (472)
T PRK03003 216 LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEA 293 (472)
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHHHHHHhc
Confidence 5899999999999999998753 22333333333334444544 45689999995 3333332 346789
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHH-HHHHcCCeEEEeccCCCCC
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKE-FAEKEGLCFMETSALESTN 145 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~Sa~~~~~ 145 (206)
+|++|+|+|++++.++.... ++..+.. .++|+++|+||+|+...... ...++.. +.....++++++||++|.|
T Consensus 294 ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~g 369 (472)
T PRK03003 294 AEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRA 369 (472)
T ss_pred CCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCC
Confidence 99999999999987766654 3333333 46899999999999642111 0111221 1222346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEIYR 159 (206)
Q Consensus 146 v~~~~~~l~~~i~~ 159 (206)
++++|..+.+.+..
T Consensus 370 v~~lf~~i~~~~~~ 383 (472)
T PRK03003 370 VDKLVPALETALES 383 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876643
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=6.8e-21 Score=153.69 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=104.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh----hhhh---hHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER----YRAV---TSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~d~~i 73 (206)
|+|.||||||||+++|++........+. +|.....-.+......+.+||+||... ...+ ....+..+|++|
T Consensus 164 LVG~PNAGKSTLln~Ls~akpkIadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv 241 (500)
T PRK12296 164 LVGFPSAGKSSLISALSAAKPKIADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLV 241 (500)
T ss_pred EEEcCCCCHHHHHHHHhcCCccccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEE
Confidence 5899999999999999986554322232 222222222333346799999999532 1111 233467899999
Q ss_pred EEeeCCCh----hhHHHHHHHHHHHHhcC-----------CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEe
Q 040835 74 LVYDITKR----QSFDNVARWLEELRGHA-----------DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMET 138 (206)
Q Consensus 74 ~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (206)
+|+|+++. +.+..+..+...+..+. ....|++||+||+|+.....+ .+.........++++|++
T Consensus 242 ~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~I 320 (500)
T PRK12296 242 HVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWPVFEV 320 (500)
T ss_pred EEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCeEEEE
Confidence 99999753 34444444444443322 136899999999998642221 222333444557899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh
Q 040835 139 SALESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 139 Sa~~~~~v~~~~~~l~~~i~~~~ 161 (206)
||++++|+++++.+|.+.+....
T Consensus 321 SA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 321 SAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999998876654
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.87 E-value=4.1e-21 Score=139.56 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=97.7
Q ss_pred CccCCCCCHHHHHHHHhcC----CCCCCC---ccccceeeEEEEEEEC------------CeEEEEEEEeCCCchhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARD----EFSLDS---KATIGVEFQTKTLVIH------------HKNVKAQIWDTAGQERYRAV 61 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~----~~~~~~---~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~ 61 (206)
++|++++|||||+++|+.. .+.... .+..+.........+. .....+.+|||||+..+...
T Consensus 5 i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~ 84 (192)
T cd01889 5 VLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRT 84 (192)
T ss_pred EEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHH
Confidence 5899999999999999973 111111 1111222222222222 23678999999999766544
Q ss_pred hHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHH-------HcC
Q 040835 62 TSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAE-------KEG 132 (206)
Q Consensus 62 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~-------~~~ 132 (206)
.......+|++++|+|+++.........+. +... .+.|+++++||+|+...... ..+++.+... ..+
T Consensus 85 ~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 85 IIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 445567789999999998754333322222 1111 25799999999998532211 1222222211 135
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 133 LCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 133 ~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++++++||++++|++++++++.+.+.
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhccc
Confidence 78999999999999999999988764
No 168
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=7.8e-21 Score=158.05 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=105.9
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh------hHhHh--cCCcEEEE
Q 040835 3 GDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV------TSAYY--RGAVGAML 74 (206)
Q Consensus 3 G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 74 (206)
|++|+|||||+|+|++........+..+.+.....+..+ +..+.+|||||+..+... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~--~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ--GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC--CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 899999999999999987655544543333333334443 456899999998766442 34443 37899999
Q ss_pred EeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 75 VYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 75 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
|+|.++.+. ...+...+.+ .++|+++++||+|+.+.+.+. .+...+.+..+++++++||++++|++++++++.
T Consensus 79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999987432 1222222322 479999999999986544443 456788888899999999999999999999998
Q ss_pred HHH
Q 040835 155 TEI 157 (206)
Q Consensus 155 ~~i 157 (206)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.86 E-value=1e-20 Score=156.74 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=105.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.++|||||+++|.+..+.....+.++.+.....+..++. ..+.+|||||++.|..++...+..+|++|+|+|+++
T Consensus 92 I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d 170 (587)
T TIGR00487 92 IMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD 170 (587)
T ss_pred EECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC
Confidence 5899999999999999998876655444444444444444322 278999999999999999889999999999999987
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC---------CeEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG---------LCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v~~~~~ 151 (206)
.........+ ... ...++|+++++||+|+.. ...++........+ .+++++||++|+|++++|+
T Consensus 171 gv~~qT~e~i-~~~---~~~~vPiIVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~ 243 (587)
T TIGR00487 171 GVMPQTIEAI-SHA---KAANVPIIVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLD 243 (587)
T ss_pred CCCHhHHHHH-HHH---HHcCCCEEEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHH
Confidence 4321111111 112 224689999999999853 13334443333322 4799999999999999999
Q ss_pred HHHH
Q 040835 152 TVLT 155 (206)
Q Consensus 152 ~l~~ 155 (206)
++..
T Consensus 244 ~I~~ 247 (587)
T TIGR00487 244 MILL 247 (587)
T ss_pred hhhh
Confidence 9863
No 170
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=2.2e-20 Score=148.07 Aligned_cols=158 Identities=18% Similarity=0.073 Sum_probs=107.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY-------RAVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d~~i 73 (206)
|+|.||||||||+|+|++........|..+.......+... ....+.++||||...- .......+..+|+++
T Consensus 164 lVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL 242 (390)
T PRK12298 164 LLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLL 242 (390)
T ss_pred EEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876533333332222222233332 2346899999996431 111223578899999
Q ss_pred EEeeCC---ChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCH
Q 040835 74 LVYDIT---KRQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG--LCFMETSALESTNV 146 (206)
Q Consensus 74 ~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 146 (206)
+|+|++ +.+.++....|+..+..... .+.|+++|+||+|+.....+ .+.+..+....+ .+++.+||+++.|+
T Consensus 243 ~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GI 321 (390)
T PRK12298 243 HLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGLGV 321 (390)
T ss_pred EEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCH
Confidence 999988 45566677777777665432 36899999999998643222 233444555444 47899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYRI 160 (206)
Q Consensus 147 ~~~~~~l~~~i~~~ 160 (206)
+++++.|.+.+.+.
T Consensus 322 deLl~~I~~~L~~~ 335 (390)
T PRK12298 322 KELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999877543
No 171
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=1e-20 Score=132.67 Aligned_cols=151 Identities=20% Similarity=0.163 Sum_probs=102.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------AVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~ 72 (206)
|+|++|+|||||+++|++.... ....+.............. ....+.+||+||...+. .....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 6899999999999999987665 2222222222222222221 15679999999976543 3445678999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH---HHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE---DAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
++|+|.++........ +..... ..+.|+++++||+|+......... .........+.+++++|+.++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876655444 333222 257999999999998653322211 112223334678999999999999999
Q ss_pred HHHHHHH
Q 040835 150 FLTVLTE 156 (206)
Q Consensus 150 ~~~l~~~ 156 (206)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998864
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.3e-20 Score=152.68 Aligned_cols=153 Identities=23% Similarity=0.178 Sum_probs=100.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh-----------hHhHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV-----------TSAYYRGA 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~ 69 (206)
++|.+|+|||||+++|++......... .+++.......+...+..+.+|||||...+... ...+++.+
T Consensus 177 ivG~~~~GKSsLin~l~~~~~~~~~~~-~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~a 255 (429)
T TIGR03594 177 IIGRPNVGKSTLVNALLGEERVIVSDI-AGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERA 255 (429)
T ss_pred EECCCCCCHHHHHHHHHCCCeeecCCC-CCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhC
Confidence 589999999999999998764322211 123333332233223357899999996433211 13468899
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-H----cCCeEEEeccCCCC
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-K----EGLCFMETSALEST 144 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~~Sa~~~~ 144 (206)
|++|+|+|++++.+..... ++..+.. .++|+++|+||+|+.. .....++...... . .+++++++||++|.
T Consensus 256 d~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~ 330 (429)
T TIGR03594 256 DVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQ 330 (429)
T ss_pred CEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCC
Confidence 9999999999876655443 3233332 4689999999999862 1111222222222 2 24789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 040835 145 NVELAFLTVLTEIYR 159 (206)
Q Consensus 145 ~v~~~~~~l~~~i~~ 159 (206)
|++++|+++.+.+..
T Consensus 331 ~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 331 GVDKLLDAIDEVYEN 345 (429)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999876654
No 173
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=1.3e-20 Score=145.38 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=100.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh--------hhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY--------RAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++..+...+..+..+......+.. .....+.+|||||.... .......+..+|++
T Consensus 10 iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~i 88 (292)
T PRK00089 10 IVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLV 88 (292)
T ss_pred EECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEE
Confidence 5899999999999999998775443322122221122222 23478999999996432 22334567899999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~ 151 (206)
++|+|+++...- .....+..+. ..+.|+++|+||+|+.............+....+ .+++++||+++.|++++++
T Consensus 89 l~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~ 164 (292)
T PRK00089 89 LFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLD 164 (292)
T ss_pred EEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHH
Confidence 999999873221 1122222232 2468999999999986322222334444544444 5799999999999999999
Q ss_pred HHHHHHH
Q 040835 152 TVLTEIY 158 (206)
Q Consensus 152 ~l~~~i~ 158 (206)
++.+.+.
T Consensus 165 ~L~~~l~ 171 (292)
T PRK00089 165 VIAKYLP 171 (292)
T ss_pred HHHHhCC
Confidence 9987763
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=1.1e-20 Score=138.40 Aligned_cols=111 Identities=20% Similarity=0.156 Sum_probs=76.3
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 122 (206)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+...... ..+
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHHHH
Confidence 67899999999998888888888999999999998732111111222222222 12578999999998642111 113
Q ss_pred HHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 123 DAKEFAEKE---GLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 123 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++..+...+ +++++++||++++|++++|+++.+.+
T Consensus 161 ~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 161 QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 334444432 56899999999999999999987644
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=2.2e-20 Score=132.06 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=99.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh--------hhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR--------AVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~d~~ 72 (206)
++|.+|+|||||+++|++..+....... ..+..............+.+|||||..... ......+..+|++
T Consensus 8 ~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 86 (168)
T cd04163 8 IVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLV 86 (168)
T ss_pred EECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999987654333222 112222222233345778999999964322 2334568899999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~ 151 (206)
++|+|++++... ....+...+.. .+.|+++++||+|+........+....+.... ..+++++|++++.|++++++
T Consensus 87 ~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 87 LFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLE 162 (168)
T ss_pred EEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHH
Confidence 999999986221 11223233332 25899999999998642222233344444444 36899999999999999999
Q ss_pred HHHHH
Q 040835 152 TVLTE 156 (206)
Q Consensus 152 ~l~~~ 156 (206)
+|.+.
T Consensus 163 ~l~~~ 167 (168)
T cd04163 163 EIVKY 167 (168)
T ss_pred HHHhh
Confidence 98765
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=8.3e-20 Score=133.02 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc----------hhhhhhhHhHhcCC-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ----------ERYRAVTSAYYRGA- 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~~~- 69 (206)
|+|.+|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+......++..+
T Consensus 29 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (196)
T PRK00454 29 FAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRE 105 (196)
T ss_pred EEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCc
Confidence 5899999999999999997654455555454444333222 367999999994 34444555555544
Q ss_pred --cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHHcCCeEEEeccCCCCC
Q 040835 70 --VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAEKEGLCFMETSALESTN 145 (206)
Q Consensus 70 --d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~ 145 (206)
+++++++|.+++...... .+...+.. .+.|+++++||+|+....+. ..+++.........+++++|++++.|
T Consensus 106 ~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~g 181 (196)
T PRK00454 106 NLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQG 181 (196)
T ss_pred cceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCC
Confidence 678888888765433221 11122222 36889999999998542221 11223344444467899999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEI 157 (206)
Q Consensus 146 v~~~~~~l~~~i 157 (206)
++++++.+.+.+
T Consensus 182 i~~l~~~i~~~~ 193 (196)
T PRK00454 182 IDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 177
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=9e-20 Score=129.89 Aligned_cols=150 Identities=23% Similarity=0.146 Sum_probs=96.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCCchhh----------hh-hhHhHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY----------RA-VTSAYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~-~~~~~~~~ 68 (206)
++|.+|+|||||+++|++....... .+.............+ ...+.+|||||.... .. .....+..
T Consensus 7 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~ 84 (174)
T cd01895 7 IIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIER 84 (174)
T ss_pred EEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhh
Confidence 5899999999999999987643222 2221222222223333 345789999996422 11 11235678
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-HHc----CCeEEEeccCCC
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFA-EKE----GLCFMETSALES 143 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~ 143 (206)
+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+........+...... +.. +.+++++|++++
T Consensus 85 ~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (174)
T cd01895 85 ADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred cCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCC
Confidence 99999999999876654332 2222222 36899999999998653322222222222 222 367999999999
Q ss_pred CCHHHHHHHHHHH
Q 040835 144 TNVELAFLTVLTE 156 (206)
Q Consensus 144 ~~v~~~~~~l~~~ 156 (206)
.|++++++.+.+.
T Consensus 161 ~~i~~~~~~l~~~ 173 (174)
T cd01895 161 QGVDKLFDAIDEV 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999988753
No 178
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=5.2e-20 Score=154.79 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=105.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEE--EEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKT--LVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDI 78 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 78 (206)
|+|..++|||||+++|....+.....+.++.+..... ...++....+.+|||||++.|..++..++..+|++|+|+|+
T Consensus 249 IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA 328 (742)
T CHL00189 249 ILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAA 328 (742)
T ss_pred EECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEEC
Confidence 5899999999999999988775544333222222222 22333468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH-------HHHcC--CeEEEeccCCCCCHHHH
Q 040835 79 TKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF-------AEKEG--LCFMETSALESTNVELA 149 (206)
Q Consensus 79 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~Sa~~~~~v~~~ 149 (206)
+++........| ..+ ...++|+++++||+|+... ..+++... ...++ ++++++||++|.|++++
T Consensus 329 ~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 329 DDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred cCCCChhhHHHH-HHH---HhcCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence 874322221211 112 2246899999999998642 22222222 22233 68999999999999999
Q ss_pred HHHHHHHH
Q 040835 150 FLTVLTEI 157 (206)
Q Consensus 150 ~~~l~~~i 157 (206)
|+++....
T Consensus 402 le~I~~l~ 409 (742)
T CHL00189 402 LETILLLA 409 (742)
T ss_pred HHhhhhhh
Confidence 99887653
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.84 E-value=7.4e-20 Score=152.10 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=107.6
Q ss_pred CccCCCCCHHHHHHHHhcCC---CCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARDE---FSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 77 (206)
++|..++|||||+++|++.. +..+..++++.+.....+..++ ..+.+||+||++.|.......+.++|++++|+|
T Consensus 5 iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVD 82 (581)
T TIGR00475 5 TAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVD 82 (581)
T ss_pred EECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEE
Confidence 58999999999999999743 3333334434444434444433 789999999999998888888999999999999
Q ss_pred CCCh---hhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC--CHHHHHHHHHHc----CCeEEEeccCCCCCHH
Q 040835 78 ITKR---QSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV--PTEDAKEFAEKE----GLCFMETSALESTNVE 147 (206)
Q Consensus 78 ~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~ 147 (206)
+++. .+.+.+ ..+.. .++| +++++||+|+.+...+ ..+++..+...+ +++++++||++++|++
T Consensus 83 a~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 83 ADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred CCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 9973 333333 22222 3577 9999999998643222 123455555554 4789999999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 148 LAFLTVLTEIYR 159 (206)
Q Consensus 148 ~~~~~l~~~i~~ 159 (206)
+++..+...+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999988766544
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=6.3e-20 Score=155.52 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=104.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|..++|||||+++|....+.....+.++.+.....+..+ +..+.||||||++.|..++...+..+|++|+|+|+++
T Consensus 295 ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 295 IMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD 372 (787)
T ss_pred EECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC
Confidence 58999999999999999877765544433333333334433 4678999999999999999989999999999999987
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH-------HHHHcC--CeEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKE-------FAEKEG--LCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa~~~~~v~~~~~ 151 (206)
...-.....| ......++|++|++||+|+... +.+.+.. +...++ ++++++||++|+|++++|+
T Consensus 373 Gv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle 445 (787)
T PRK05306 373 GVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLE 445 (787)
T ss_pred CCCHhHHHHH----HHHHhcCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHH
Confidence 4221111112 2122257999999999998531 2222221 122333 6899999999999999999
Q ss_pred HHHH
Q 040835 152 TVLT 155 (206)
Q Consensus 152 ~l~~ 155 (206)
++..
T Consensus 446 ~I~~ 449 (787)
T PRK05306 446 AILL 449 (787)
T ss_pred hhhh
Confidence 9875
No 181
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=6.1e-20 Score=136.74 Aligned_cols=154 Identities=20% Similarity=0.169 Sum_probs=105.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE--------RYRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d~~ 72 (206)
++|.||||||||+|+|++......+....++......+.. ..+..+.++||||.. .+.......+..+|++
T Consensus 11 IiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDli 89 (298)
T COG1159 11 IIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLI 89 (298)
T ss_pred EEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEE
Confidence 5899999999999999999998777655343333333333 347889999999943 2334455667899999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~ 151 (206)
+||+|+++...- .....++.+.. .+.|+++++||+|..............+..... ..++++||+++.|++.+.+
T Consensus 90 lfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~ 165 (298)
T COG1159 90 LFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLE 165 (298)
T ss_pred EEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHH
Confidence 999999874322 11222333333 468999999999986533321222233333332 3699999999999999888
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
.+...+.+
T Consensus 166 ~i~~~Lpe 173 (298)
T COG1159 166 IIKEYLPE 173 (298)
T ss_pred HHHHhCCC
Confidence 88776644
No 182
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.1e-20 Score=127.80 Aligned_cols=154 Identities=22% Similarity=0.319 Sum_probs=118.2
Q ss_pred CccCCCCCHHHHHHHHhcC-------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARD-------EFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 73 (206)
++|..++|||||+.++... --.....+|++.+...+.+. ...+.+||.+|++...++|..|+..++++|
T Consensus 22 IlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii 97 (197)
T KOG0076|consen 22 ILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWLAHGII 97 (197)
T ss_pred eeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHHhceeE
Confidence 5799999999999986542 11233456666666554432 577899999999999999999999999999
Q ss_pred EEeeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH---Hc---CCeEEEeccCCCCCH
Q 040835 74 LVYDITKRQSFDNVARWLEELRG-HADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE---KE---GLCFMETSALESTNV 146 (206)
Q Consensus 74 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~---~~~~~~~Sa~~~~~v 146 (206)
+++|+++++.++.....+..+.. ....++|+++.+||.|+.+.. ..+++..... .. ..++..+||.+|+||
T Consensus 98 ~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv 175 (197)
T KOG0076|consen 98 YVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPRRDNPFQPVSALTGEGV 175 (197)
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCCccCccccchhhhcccH
Confidence 99999999998877665555433 334789999999999997522 3334433333 22 357999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYRI 160 (206)
Q Consensus 147 ~~~~~~l~~~i~~~ 160 (206)
++...|++..+.++
T Consensus 176 ~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 176 KEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999888776
No 183
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=9.5e-20 Score=130.94 Aligned_cols=140 Identities=21% Similarity=0.267 Sum_probs=91.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc----------hhhhhhhHhHhc---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ----------ERYRAVTSAYYR--- 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~--- 67 (206)
|+|.+|+|||||+++|++..+.....++.+.+........+ ..+.+|||||. +.+......+++
T Consensus 23 ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (179)
T TIGR03598 23 FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRE 99 (179)
T ss_pred EEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhCh
Confidence 58999999999999999986444444444555444333333 26899999994 234444445555
Q ss_pred CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHcC--CeEEEeccCCC
Q 040835 68 GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEKEG--LCFMETSALES 143 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~ 143 (206)
.++++++|+|.+++.+.... .++..+.. .++|+++++||+|+..... ...+++++.....+ .++|++||+++
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g 175 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKK 175 (179)
T ss_pred hhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCC
Confidence 35799999999875443333 22233332 4689999999999853211 12344445555543 47999999999
Q ss_pred CCHH
Q 040835 144 TNVE 147 (206)
Q Consensus 144 ~~v~ 147 (206)
+|++
T Consensus 176 ~gi~ 179 (179)
T TIGR03598 176 TGID 179 (179)
T ss_pred CCCC
Confidence 9973
No 184
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.83 E-value=3.6e-19 Score=130.20 Aligned_cols=113 Identities=21% Similarity=0.328 Sum_probs=84.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCC-cEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGA-VGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~ 79 (206)
++|++|||||+|+++|....+.....++ ..+..............+.+||+||+..+...+..+++.+ +++|+|+|++
T Consensus 5 l~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~ 83 (203)
T cd04105 5 LLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSA 83 (203)
T ss_pred EEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECc
Confidence 5899999999999999998776554433 2222222221123457799999999999998888999998 9999999999
Q ss_pred Ch-hhHHHHHHHHHHHHhc---CCCCCcEEEEEeCCCCC
Q 040835 80 KR-QSFDNVARWLEELRGH---ADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 80 ~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~ 114 (206)
+. .++..+..|+..+... ...++|+++++||+|+.
T Consensus 84 ~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 84 TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 87 5677666655443221 12579999999999985
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1.1e-19 Score=147.46 Aligned_cols=149 Identities=22% Similarity=0.164 Sum_probs=102.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ--------ERYRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++........ ..+.+...........+..+.+|||||. +.+......+++.+|++
T Consensus 4 ivG~~nvGKStL~n~l~~~~~~~v~~-~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~v 82 (429)
T TIGR03594 4 IVGRPNVGKSTLFNRLTGKRDAIVSD-TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVI 82 (429)
T ss_pred EECCCCCCHHHHHHHHhCCCcceecC-CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEE
Confidence 58999999999999999876432221 1233333333333334467999999995 44555667788999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 151 (206)
++|+|..++.+... ..+...+.+ .++|+++|+||+|+..... . ... ....++ +++++||.++.|++++++
T Consensus 83 l~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~-~---~~~-~~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 83 LFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDA-V---AAE-FYSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred EEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCcccc-c---HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence 99999987543322 122222333 3689999999999864222 1 122 334566 699999999999999999
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
.+.+.+..
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 98877643
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.9e-19 Score=146.14 Aligned_cols=142 Identities=23% Similarity=0.186 Sum_probs=98.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER--------YRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~ 71 (206)
|+|.+|||||||+|+|.+..... ...+..+.+.....+..+ +..+.+|||||.+. +......++..+|+
T Consensus 6 ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~ 83 (435)
T PRK00093 6 IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL--GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADV 83 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC--CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999876432 222222333333334443 37899999999876 33334567889999
Q ss_pred EEEEeeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHH
Q 040835 72 AMLVYDITKRQSFD--NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC-FMETSALESTNVEL 148 (206)
Q Consensus 72 ~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~ 148 (206)
+|+|+|+.++.+.. .+..|+. . .+.|+++++||+|... ......++ ...++. ++++||+++.|+++
T Consensus 84 il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~----~~~~~~~~-~~lg~~~~~~iSa~~g~gv~~ 152 (435)
T PRK00093 84 ILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPD----EEADAYEF-YSLGLGEPYPISAEHGRGIGD 152 (435)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCcc----chhhHHHH-HhcCCCCCEEEEeeCCCCHHH
Confidence 99999998754332 2233332 2 3689999999999643 12222222 345654 89999999999999
Q ss_pred HHHHHHH
Q 040835 149 AFLTVLT 155 (206)
Q Consensus 149 ~~~~l~~ 155 (206)
+|+.+..
T Consensus 153 l~~~I~~ 159 (435)
T PRK00093 153 LLDAILE 159 (435)
T ss_pred HHHHHHh
Confidence 9999887
No 187
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-20 Score=130.10 Aligned_cols=155 Identities=32% Similarity=0.544 Sum_probs=135.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..|.||||++++.+.+.+...+.+|.+.........-+...+.+..|||.|++.+......++-++...|+++|++.
T Consensus 15 lvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts 94 (216)
T KOG0096|consen 15 LVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS 94 (216)
T ss_pred EecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee
Confidence 47999999999999999999999999999998887776665567999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+.++.++.+|...+.+.+ .++|+++++||.|..... .......+..+.++.+++.|++.+.|+..-|.|+.+.+.
T Consensus 95 r~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~ 169 (216)
T KOG0096|consen 95 RFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLT 169 (216)
T ss_pred hhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhhhhc
Confidence 999999999999998888 469999999999986522 233445566677889999999999999999999987764
No 188
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=5e-20 Score=133.37 Aligned_cols=154 Identities=23% Similarity=0.238 Sum_probs=102.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC----------------ccccceeeEEEEEEEC--CeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS----------------KATIGVEFQTKTLVIH--HKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~ 62 (206)
++|+.++|||||+++|+........ ....+.+......... .....+.++||||+..|....
T Consensus 8 i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~ 87 (188)
T PF00009_consen 8 IIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEM 87 (188)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHH
T ss_pred EECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeecc
Confidence 5899999999999999965432111 0001222222233333 556889999999999998888
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHH-HHHHHc------CCe
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAK-EFAEKE------GLC 134 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~------~~~ 134 (206)
...+..+|++|+|+|+.+.... .....+..+.. .++|+++++||+|+...+. ...+++. .+.+.. .++
T Consensus 88 ~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 163 (188)
T PF00009_consen 88 IRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVP 163 (188)
T ss_dssp HHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEE
T ss_pred cceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccce
Confidence 8889999999999999876432 22333333333 4688999999999862110 0111122 333333 257
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHH
Q 040835 135 FMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 135 ~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++.+||.+|.|++++++.+.+.+.
T Consensus 164 vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 164 VIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEEEecCCCCCHHHHHHHHHHhCc
Confidence 999999999999999999887653
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=4.2e-19 Score=147.90 Aligned_cols=153 Identities=21% Similarity=0.251 Sum_probs=108.9
Q ss_pred CccCCCCCHHHHHHHHhcCC--CCC-----CC------ccccceeeEEEEEEE-----CCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDE--FSL-----DS------KATIGVEFQTKTLVI-----HHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
++|+.++|||||+++|+... +.. .. ....+.++....+.+ ++..+.+.+|||||+..|...+
T Consensus 12 IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v 91 (600)
T PRK05433 12 IIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEV 91 (600)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHH
Confidence 58999999999999998631 110 00 112244444333333 3447889999999999999989
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe---EEEec
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC---FMETS 139 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~S 139 (206)
..++..+|++|+|+|++++........|..... .++|+++++||+|+.... ......++....++. ++.+|
T Consensus 92 ~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iS 165 (600)
T PRK05433 92 SRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVS 165 (600)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEe
Confidence 999999999999999998755554445543321 468999999999985311 122233444445554 89999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 040835 140 ALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 140 a~~~~~v~~~~~~l~~~i~~ 159 (206)
|+++.|++++++++.+.+..
T Consensus 166 AktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 166 AKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred cCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999887643
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=3.8e-19 Score=151.52 Aligned_cols=149 Identities=23% Similarity=0.173 Sum_probs=101.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER--------YRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++....... .+.+.+...........+..+.+|||||.+. +......++..+|++
T Consensus 280 IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~i 358 (712)
T PRK09518 280 IVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAV 358 (712)
T ss_pred EECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999987653222 2234444444443334456789999999653 344455678999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 151 (206)
|+|+|.++..... ...|...+.. .++|+++|+||+|+... ......+. ..+. ..+++||+++.|++++|+
T Consensus 359 L~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~----~~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 359 VFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQAS----EYDAAEFW-KLGLGEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred EEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccc----hhhHHHHH-HcCCCCeEEEECCCCCCchHHHH
Confidence 9999998643211 1234444443 47999999999998531 11222222 2233 367899999999999999
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
++++.+..
T Consensus 430 ~i~~~l~~ 437 (712)
T PRK09518 430 EALDSLKV 437 (712)
T ss_pred HHHHhccc
Confidence 99988754
No 191
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=8.3e-19 Score=145.21 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=99.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------------CeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH----------------HKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
++|++++|||||+++|.+..+.......++.+.....+..+ .....+.+|||||++.|..++..
T Consensus 9 IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~ 88 (590)
T TIGR00491 9 VLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKR 88 (590)
T ss_pred EECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHH
Confidence 58999999999999999987754322211111111111111 00123889999999999999999
Q ss_pred HhcCCcEEEEEeeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----CC--------HHH------
Q 040835 65 YYRGAVGAMLVYDITK---RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA----VP--------TED------ 123 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~--------~~~------ 123 (206)
+++.+|++++|+|+++ +.+++.+.. +.. .++|+++++||+|+..... .. ...
T Consensus 89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 89 GGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 9999999999999987 344433322 222 3689999999999853110 00 000
Q ss_pred ------HHHHHH------------Hc--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 124 ------AKEFAE------------KE--GLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 124 ------~~~~~~------------~~--~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
...+.. .+ .++++++||++|+|+++++.++.....+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 001111 11 3579999999999999999988755433
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.8e-19 Score=145.16 Aligned_cols=152 Identities=23% Similarity=0.221 Sum_probs=100.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh----------hhhh-hHhHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER----------YRAV-TSAYYRGA 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~~~~~~ 69 (206)
|+|.+|+|||||+|+|++......... .+++.......+...+..+.+|||||... +... ...+++.+
T Consensus 178 ivG~~n~GKStlin~ll~~~~~~~~~~-~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~a 256 (435)
T PRK00093 178 IIGRPNVGKSSLINALLGEERVIVSDI-AGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERA 256 (435)
T ss_pred EECCCCCCHHHHHHHHhCCCceeecCC-CCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHC
Confidence 589999999999999998764332221 13444443333333456689999999532 2211 23467899
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH-HHHHH----cCCeEEEeccCCCC
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAK-EFAEK----EGLCFMETSALEST 144 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~ 144 (206)
|++|+|+|++++.+..... +...+.. .++|+++++||+|+..... ..+.. .+... ..++++++||+++.
T Consensus 257 d~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA~~~~ 330 (435)
T PRK00093 257 DVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISALTGQ 330 (435)
T ss_pred CEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeCCCCC
Confidence 9999999999876654433 2233332 3689999999999863111 11221 11111 24789999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 040835 145 NVELAFLTVLTEIYR 159 (206)
Q Consensus 145 ~v~~~~~~l~~~i~~ 159 (206)
|++++++.+.+....
T Consensus 331 gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 331 GVDKLLEAIDEAYEN 345 (435)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998876543
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=7e-19 Score=149.77 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=110.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh----------hHhHh--cC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV----------TSAYY--RG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~~--~~ 68 (206)
++|++|+|||||+|+|++........ .|.+.+.+...+...+..+.+||+||...+... ...++ ..
T Consensus 8 LvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~ 85 (772)
T PRK09554 8 LIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGD 85 (772)
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccC
Confidence 58999999999999999876643333 356666666666667788999999998655321 22333 48
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
+|++++|+|.++.+.. ..+...+.+ .++|+++++||+|+.+.+.+ ..+...+.+..|++++++|+.+++|+++
T Consensus 86 aD~vI~VvDat~ler~---l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIde 158 (772)
T PRK09554 86 ADLLINVVDASNLERN---LYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEA 158 (772)
T ss_pred CCEEEEEecCCcchhh---HHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 9999999999986532 223334433 46999999999998654443 3556788888999999999999999999
Q ss_pred HHHHHHHHH
Q 040835 149 AFLTVLTEI 157 (206)
Q Consensus 149 ~~~~l~~~i 157 (206)
+++.+.+..
T Consensus 159 L~~~I~~~~ 167 (772)
T PRK09554 159 LKLAIDRHQ 167 (772)
T ss_pred HHHHHHHhh
Confidence 998887654
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.6e-19 Score=141.48 Aligned_cols=148 Identities=22% Similarity=0.163 Sum_probs=106.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER---------YRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d~ 71 (206)
++|.||||||||+|+|++.......+.+ |.|.....-...+.+..|.++||+|.+. ........+..||+
T Consensus 8 IVGRPNVGKSTLFNRL~g~r~AIV~D~p-GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADv 86 (444)
T COG1160 8 IVGRPNVGKSTLFNRLTGRRIAIVSDTP-GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADV 86 (444)
T ss_pred EECCCCCcHHHHHHHHhCCeeeEeecCC-CCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999999887666544 5666655555556667799999999653 23345567889999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAF 150 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~ 150 (206)
+|||+|....-+-.+ ......++. .++|+++|+||+|-.. ..+...++.. +|. .++.+||.+|.|+.+++
T Consensus 87 ilfvVD~~~Git~~D-~~ia~~Lr~---~~kpviLvvNK~D~~~----~e~~~~efys-lG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 87 ILFVVDGREGITPAD-EEIAKILRR---SKKPVILVVNKIDNLK----AEELAYEFYS-LGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred EEEEEeCCCCCCHHH-HHHHHHHHh---cCCCEEEEEEcccCch----hhhhHHHHHh-cCCCCceEeehhhccCHHHHH
Confidence 999999986433221 112222332 4699999999999642 2233333333 444 68999999999999999
Q ss_pred HHHHHHHH
Q 040835 151 LTVLTEIY 158 (206)
Q Consensus 151 ~~l~~~i~ 158 (206)
+.++..+.
T Consensus 158 d~v~~~l~ 165 (444)
T COG1160 158 DAVLELLP 165 (444)
T ss_pred HHHHhhcC
Confidence 99998863
No 195
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.3e-18 Score=148.35 Aligned_cols=151 Identities=19% Similarity=0.150 Sum_probs=100.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCch----------hhhhh-hHhHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE----------RYRAV-TSAYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~-~~~~~~~ 68 (206)
|+|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||.. .+..+ ....++.
T Consensus 455 ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~ 532 (712)
T PRK09518 455 LVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIER 532 (712)
T ss_pred EECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHHHHHhhc
Confidence 58999999999999999987532 2222223333333344444 456799999953 22222 2345789
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-H----cCCeEEEeccCCC
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-K----EGLCFMETSALES 143 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~~Sa~~~ 143 (206)
+|++++|+|++++.+......+ ..+.. .++|+++|+||+|+..... .+....... . ...+++.+||+++
T Consensus 533 advvilViDat~~~s~~~~~i~-~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 533 SELALFLFDASQPISEQDLKVM-SMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 9999999999988776655433 33332 4689999999999864211 122222222 1 1356899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 040835 144 TNVELAFLTVLTEIYR 159 (206)
Q Consensus 144 ~~v~~~~~~l~~~i~~ 159 (206)
.|++++|+.+.+.+.+
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887764
No 196
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.1e-20 Score=121.73 Aligned_cols=152 Identities=22% Similarity=0.322 Sum_probs=110.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.-|+||||++.++--... ....|+++++... +..++.++++||.+|+-..+..|+-|+.+.|++|||+|.+|
T Consensus 23 ilgldGaGkttIlyrlqvgev-vttkPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd 97 (182)
T KOG0072|consen 23 ILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD 97 (182)
T ss_pred EeeccCCCeeEEEEEcccCcc-cccCCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc
Confidence 357778888887776665554 3345666666554 44578999999999999999999999999999999999999
Q ss_pred hhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH-----HHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVAR-WLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKE-----FAEKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++.+..... ++..+.+..-....+++++||+|..... ...++.. -.+..-+.+|++||.+++|++.+.+|+.
T Consensus 98 ~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~ 175 (182)
T KOG0072|consen 98 RDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQ 175 (182)
T ss_pred hhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHH
Confidence 887765544 3333433333457789999999986411 2222111 1122236799999999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+..
T Consensus 176 ~~l~~ 180 (182)
T KOG0072|consen 176 RPLKS 180 (182)
T ss_pred HHHhc
Confidence 87654
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=136.21 Aligned_cols=149 Identities=20% Similarity=0.191 Sum_probs=110.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh--------hHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV--------TSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~d~~ 72 (206)
++|.||||||||+|.|++.+.....+-. |+|.......++-.++.+.++||+|.++..+. ....+..||.+
T Consensus 222 IiG~PNvGKSSLLNaL~~~d~AIVTdI~-GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlv 300 (454)
T COG0486 222 IIGRPNVGKSSLLNALLGRDRAIVTDIA-GTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLV 300 (454)
T ss_pred EECCCCCcHHHHHHHHhcCCceEecCCC-CCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999999887776655 77788787777777899999999997654332 23457899999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
++|+|.+.+.+-.+.. .+. ....++|+++|.||.|+....... ......+.+++.+|+++++|++.+.+.
T Consensus 301 L~v~D~~~~~~~~d~~-~~~----~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~Gl~~L~~~ 370 (454)
T COG0486 301 LFVLDASQPLDKEDLA-LIE----LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEGLDALREA 370 (454)
T ss_pred EEEEeCCCCCchhhHH-HHH----hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecCccCHHHHHHH
Confidence 9999999852222111 111 233679999999999997533311 112222457999999999999999988
Q ss_pred HHHHHHHH
Q 040835 153 VLTEIYRI 160 (206)
Q Consensus 153 l~~~i~~~ 160 (206)
+.+.+...
T Consensus 371 i~~~~~~~ 378 (454)
T COG0486 371 IKQLFGKG 378 (454)
T ss_pred HHHHHhhc
Confidence 88777665
No 198
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.1e-18 Score=128.32 Aligned_cols=146 Identities=26% Similarity=0.199 Sum_probs=94.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc-----------------------------cccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK-----------------------------ATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
|+|.+|+|||||+++|+...-..... ...+++.......+...+..+.+||
T Consensus 4 iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liD 83 (208)
T cd04166 4 TCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIAD 83 (208)
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEE
Confidence 58999999999999998643221100 0023444444445555667899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----CHHHHHHH
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV----PTEDAKEF 127 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~ 127 (206)
|||++.|.......+..+|++|+|+|++++..-.. ......+... ...++++++||+|+...... ...++..+
T Consensus 84 TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 84 TPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred CCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 99998887666777899999999999987532111 1111222221 12457889999998642111 12334455
Q ss_pred HHHcCC---eEEEeccCCCCCHHHH
Q 040835 128 AEKEGL---CFMETSALESTNVELA 149 (206)
Q Consensus 128 ~~~~~~---~~~~~Sa~~~~~v~~~ 149 (206)
....+. +++.+||+++.|+.+.
T Consensus 161 ~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 161 AAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHcCCCCceEEEEeCCCCCCCccC
Confidence 555653 5899999999998753
No 199
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=3.2e-18 Score=121.25 Aligned_cols=147 Identities=18% Similarity=0.217 Sum_probs=95.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch----------hhhhhhHhHhc---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE----------RYRAVTSAYYR--- 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~--- 67 (206)
++|.+|+|||||++.|.+........++.+.+........+. .+.+|||||.. .+......++.
T Consensus 4 l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 4 FAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 589999999999999996655555555555555443333332 78999999942 23444444554
Q ss_pred CCcEEEEEeeCCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHH--HcCCeEEEeccC
Q 040835 68 GAVGAMLVYDITKRQSF--DNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAE--KEGLCFMETSAL 141 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa~ 141 (206)
..+++++++|..+..+. ..+..|+.. .+.|+++++||+|+...... .........+ ....+++++|++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 45788899998765321 223334332 24899999999998532211 1122222222 234579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 040835 142 ESTNVELAFLTVLTE 156 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~ 156 (206)
++.++.++++++.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998765
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.79 E-value=1.4e-17 Score=124.07 Aligned_cols=148 Identities=24% Similarity=0.199 Sum_probs=97.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------AVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~i 73 (206)
++|++|+|||||+++|.+........+..+.+.....+.+ .+..+++||+||..... .....+++++|+++
T Consensus 5 lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il 82 (233)
T cd01896 5 LVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY--KGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLIL 82 (233)
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE--CCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEE
Confidence 5899999999999999987643322222122222333333 34678999999974322 23345789999999
Q ss_pred EEeeCCChh-hHHHHHHHHHHH-----------------------------------------Hhc--------------
Q 040835 74 LVYDITKRQ-SFDNVARWLEEL-----------------------------------------RGH-------------- 97 (206)
Q Consensus 74 ~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~-------------- 97 (206)
+|+|+++++ ....+...+..+ .++
T Consensus 83 ~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~ 162 (233)
T cd01896 83 MVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDIT 162 (233)
T ss_pred EEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCC
Confidence 999998765 333332222111 000
Q ss_pred --------C--CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 98 --------A--DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 98 --------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
. ..-+|+++|+||+|+. ..++...++.. ..++++||+++.|++++|+.+.+.+
T Consensus 163 ~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 163 VDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred HHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 0236899999999985 34455555443 4689999999999999999888754
No 201
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-20 Score=130.53 Aligned_cols=163 Identities=34% Similarity=0.576 Sum_probs=137.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH-KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|..|+|||+++.+++...++..+..+++..+..+....+. .-+.+++||..|+++|..+.+.|++.+.+.++|||++
T Consensus 30 Vig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt 109 (229)
T KOG4423|consen 30 VIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVT 109 (229)
T ss_pred eeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcc
Confidence 689999999999999999999999999988887766554433 3467899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC----CCCCcEEEEEeCCCCCcCCCCC-HHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA----DKNIIIMLVGNKSDLETLRAVP-TEDAKEFAEKEGL-CFMETSALESTNVELAFLTV 153 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l 153 (206)
+.-+|+....|.+.+.... +..+|+++.+||||........ ...+..+.+++|. ..+++|++.+.+++|+-..+
T Consensus 110 ~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~l 189 (229)
T KOG4423|consen 110 RSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQREL 189 (229)
T ss_pred ccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHH
Confidence 9999999999998876433 3567899999999987533222 4667788888886 49999999999999999999
Q ss_pred HHHHHHHhhh
Q 040835 154 LTEIYRIVSK 163 (206)
Q Consensus 154 ~~~i~~~~~~ 163 (206)
+++++..-.+
T Consensus 190 Ve~~lvnd~q 199 (229)
T KOG4423|consen 190 VEKILVNDEQ 199 (229)
T ss_pred HHHHHhhccC
Confidence 9998876433
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=3.2e-18 Score=142.27 Aligned_cols=154 Identities=16% Similarity=0.208 Sum_probs=111.2
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLDS------------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
|+|+.++|||||+++|+.. .+.... ....+.++......+.+.+..+.+|||||+..|......++
T Consensus 6 IiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l 85 (594)
T TIGR01394 6 IIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVL 85 (594)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHH
Confidence 5899999999999999863 221111 11235666666666777788999999999999998899999
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHHH-------HcCCeEEEe
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV-PTEDAKEFAE-------KEGLCFMET 138 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~~~~ 138 (206)
+.+|++++|+|+.+.. ......|+..+.. .++|+++++||+|+...+.. ...++..+.. ...++++.+
T Consensus 86 ~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~ 161 (594)
T TIGR01394 86 GMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYA 161 (594)
T ss_pred HhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEec
Confidence 9999999999998743 3344555555544 46899999999998542211 1233444442 235689999
Q ss_pred ccCCCC----------CHHHHHHHHHHHHH
Q 040835 139 SALEST----------NVELAFLTVLTEIY 158 (206)
Q Consensus 139 Sa~~~~----------~v~~~~~~l~~~i~ 158 (206)
||+++. |+..+|+.+++.+.
T Consensus 162 SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 162 SGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred hhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 999996 78888888887654
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=99.78 E-value=9.2e-18 Score=139.46 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=109.7
Q ss_pred CccCCCCCHHHHHHHHhc--CCCCCCC------------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFAR--DEFSLDS------------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
|+|+.++|||||+++|+. +.+.... ....+.++......+.+.+..+.+|||||+..|...+..++
T Consensus 10 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l 89 (607)
T PRK10218 10 IIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVM 89 (607)
T ss_pred EECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHH
Confidence 589999999999999997 3332211 23456777777777778889999999999999999999999
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHHHH-------cCCeEEEe
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAKEFAEK-------EGLCFMET 138 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~~~~~ 138 (206)
+.+|++|+|+|+++.... ..+.++..+.. .++|.++++||+|+...+. ...+++..+... ..++++.+
T Consensus 90 ~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~ 165 (607)
T PRK10218 90 SMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYA 165 (607)
T ss_pred HhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEe
Confidence 999999999999875322 22233333332 4688999999999853221 112334444322 34679999
Q ss_pred ccCCCC----------CHHHHHHHHHHHHH
Q 040835 139 SALEST----------NVELAFLTVLTEIY 158 (206)
Q Consensus 139 Sa~~~~----------~v~~~~~~l~~~i~ 158 (206)
||.+|. ++..+++.+++.+.
T Consensus 166 SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 166 SALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred EhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 999998 47777776666553
No 204
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.78 E-value=1.6e-18 Score=114.71 Aligned_cols=146 Identities=25% Similarity=0.323 Sum_probs=109.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..++|||||+..|...+.. ...||.|++.. .+..+ ..+++.+||.+|+...+..|..|+.+.|++|||+|.+|
T Consensus 22 llGldnAGKTT~LKqL~sED~~-hltpT~GFn~k--~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D 97 (185)
T KOG0074|consen 22 LLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTK--KVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD 97 (185)
T ss_pred EEecCCCcchhHHHHHccCChh-hccccCCcceE--EEeec-CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc
Confidence 3688999999999999887764 34566565544 33333 45889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--------CCeEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE--------GLCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~v~~~~~ 151 (206)
...|+.+..-+.++.... -..+|+++.+||.|+.... ..+..+.+. -..+-++|+.+++|+.+-.+
T Consensus 98 ~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa-----~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 98 EKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA-----KVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred hHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc-----chHHHHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 888888766555554333 3579999999999985311 122222222 24588999999999988877
Q ss_pred HHHH
Q 040835 152 TVLT 155 (206)
Q Consensus 152 ~l~~ 155 (206)
|+..
T Consensus 173 wv~s 176 (185)
T KOG0074|consen 173 WVQS 176 (185)
T ss_pred hhhc
Confidence 7753
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.78 E-value=1.9e-17 Score=137.67 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=96.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc----ccceeeEEEEEEE--CCeE-----E-----EEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA----TIGVEFQTKTLVI--HHKN-----V-----KAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~G~~~~~~~~~~ 64 (206)
++|++++|||||+++|.+..+...... +.+.+........ .+.. . .+.+|||||++.|..++..
T Consensus 11 i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~ 90 (586)
T PRK04004 11 VLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKR 90 (586)
T ss_pred EECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHH
Confidence 589999999999999987655333222 2222111110000 0111 1 2689999999999998888
Q ss_pred HhcCCcEEEEEeeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----CH--------H-------
Q 040835 65 YYRGAVGAMLVYDITK---RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV----PT--------E------- 122 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~--------~------- 122 (206)
.+..+|++|+|+|+++ +.++..+.. +.. .++|+++++||+|+...... .. .
T Consensus 91 ~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~ 163 (586)
T PRK04004 91 GGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELE 163 (586)
T ss_pred hHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHH
Confidence 8999999999999987 444444332 222 46899999999998421100 00 0
Q ss_pred ----HHHHHHHHc---------------CCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 123 ----DAKEFAEKE---------------GLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 123 ----~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++....... .++++++||.+++|+++++..+....
T Consensus 164 ~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 164 EKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 011111111 25789999999999999998876544
No 206
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=1.6e-17 Score=124.09 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=79.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC-------------C---ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD-------------S---KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
++|..|+|||||+++|+...-... + ....+.++......+.+.+..+.+|||||+..|...+..
T Consensus 4 i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~ 83 (237)
T cd04168 4 ILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVER 83 (237)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHH
Confidence 589999999999999986421100 0 111233444445555667788999999999999888899
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
+++.+|++++|+|.++.... ....++..+.. .++|+++++||+|+.
T Consensus 84 ~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 84 SLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 99999999999999876432 23344444433 368999999999985
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.77 E-value=2.1e-18 Score=139.46 Aligned_cols=148 Identities=20% Similarity=0.167 Sum_probs=97.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------------------------ccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------------------------KATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|++++|||||+++|+...-.... ....|++.......+......+.+||
T Consensus 11 iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liD 90 (425)
T PRK12317 11 VIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVD 90 (425)
T ss_pred EECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEE
Confidence 5899999999999999853221100 01235555555566666778899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----CCHHHHHH
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRA----VPTEDAKE 126 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~ 126 (206)
|||++.|.......+..+|++|+|+|+++...+... ..++..+.... ..|+++++||+|+..... ...+++..
T Consensus 91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~~~i~~ 168 (425)
T PRK12317 91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRYEEVKEEVSK 168 (425)
T ss_pred CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence 999988866555667899999999999873122111 22222222221 246999999999864111 11234555
Q ss_pred HHHHcC-----CeEEEeccCCCCCHHHHH
Q 040835 127 FAEKEG-----LCFMETSALESTNVELAF 150 (206)
Q Consensus 127 ~~~~~~-----~~~~~~Sa~~~~~v~~~~ 150 (206)
+....+ ++++++||++|+|+++..
T Consensus 169 ~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 169 LLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHhhCCCcCcceEEEeecccCCCccccc
Confidence 555555 469999999999998754
No 208
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=113.95 Aligned_cols=148 Identities=24% Similarity=0.419 Sum_probs=110.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC--------Cc----cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD--------SK----ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 68 (206)
|.|+.++||||+++++........ +. .|+.+++.. ..++ .+..++++|||||++|..+|..++++
T Consensus 15 v~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~-~~~~v~LfgtPGq~RF~fm~~~l~~g 91 (187)
T COG2229 15 VIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELD-EDTGVHLFGTPGQERFKFMWEILSRG 91 (187)
T ss_pred EEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEc-CcceEEEecCCCcHHHHHHHHHHhCC
Confidence 579999999999999998764111 11 122222222 2222 23678999999999999999999999
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCH
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE--GLCFMETSALESTNV 146 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v 146 (206)
++++|+++|.+.+..+ +....+..+.... .+|++|+.||.|+.. ..+.++++++.... .+++++.++.++++.
T Consensus 92 a~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~ 166 (187)
T COG2229 92 AVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDATEGEGA 166 (187)
T ss_pred cceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecccchhH
Confidence 9999999999998887 4555555554432 299999999999974 44666776666655 789999999999999
Q ss_pred HHHHHHHHHH
Q 040835 147 ELAFLTVLTE 156 (206)
Q Consensus 147 ~~~~~~l~~~ 156 (206)
.+.+..+...
T Consensus 167 ~~~L~~ll~~ 176 (187)
T COG2229 167 RDQLDVLLLK 176 (187)
T ss_pred HHHHHHHHhh
Confidence 9888777654
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.77 E-value=3.5e-18 Score=138.16 Aligned_cols=148 Identities=17% Similarity=0.139 Sum_probs=99.3
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCC---------------------------CccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLD---------------------------SKATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|+.++|||||+++|+.. .+... .....+.+.......+...+..+.+||
T Consensus 12 i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiD 91 (426)
T TIGR00483 12 FIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVD 91 (426)
T ss_pred EEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEE
Confidence 5899999999999999862 11100 001124455555555666678899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----CCHHHHH
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDN--VARWLEELRGHADKNIIIMLVGNKSDLETLRA----VPTEDAK 125 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~ 125 (206)
|||++.|.......+..+|++|+|+|++++++... ...++. +.... ...|+++++||+|+..... ....++.
T Consensus 92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~ 169 (426)
T TIGR00483 92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEEEFEAIKKEVS 169 (426)
T ss_pred CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHHHHHHHHHHHH
Confidence 99999887766667889999999999998743211 111111 22222 1357999999999853111 1134555
Q ss_pred HHHHHcC-----CeEEEeccCCCCCHHHHH
Q 040835 126 EFAEKEG-----LCFMETSALESTNVELAF 150 (206)
Q Consensus 126 ~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 150 (206)
.+++..+ ++++++||+++.|+.+.+
T Consensus 170 ~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 170 NLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHcCCCcccceEEEeeccccccccccc
Confidence 6666655 579999999999998754
No 210
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=2.1e-17 Score=137.99 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=100.4
Q ss_pred CccCCCCCHHHHHHHHhcCC---CCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDE---FSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 76 (206)
++|..++|||||+++|++.. +..+... ++++......+. ..+..+.+|||||++.|.......+..+|++++|+
T Consensus 5 ~~GhvdhGKTtLi~aLtg~~~dr~~eE~~r--GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVV 82 (614)
T PRK10512 5 TAGHVDHGKTTLLQAITGVNADRLPEEKKR--GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVV 82 (614)
T ss_pred EECCCCCCHHHHHHHHhCCCCccchhcccC--CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEE
Confidence 47999999999999999743 2222222 333333222221 12345899999999999877777889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC--HHHHHHHHHHcC---CeEEEeccCCCCCHHHHH
Q 040835 77 DITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAVP--TEDAKEFAEKEG---LCFMETSALESTNVELAF 150 (206)
Q Consensus 77 d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~v~~~~ 150 (206)
|+++... ....+.+..+.. .++| ++||+||+|+.+..... .+++..+....+ .+++++||++++|+++++
T Consensus 83 da~eg~~-~qT~ehl~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~ 158 (614)
T PRK10512 83 ACDDGVM-AQTREHLAILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALR 158 (614)
T ss_pred ECCCCCc-HHHHHHHHHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHH
Confidence 9987421 111222222222 2355 57999999986422211 234455555444 689999999999999999
Q ss_pred HHHHHHHH
Q 040835 151 LTVLTEIY 158 (206)
Q Consensus 151 ~~l~~~i~ 158 (206)
+.|.+...
T Consensus 159 ~~L~~~~~ 166 (614)
T PRK10512 159 EHLLQLPE 166 (614)
T ss_pred HHHHHhhc
Confidence 99876543
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.76 E-value=1.6e-17 Score=112.63 Aligned_cols=132 Identities=25% Similarity=0.260 Sum_probs=93.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc----hhhhhhhHhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ----ERYRAVTSAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i~v~ 76 (206)
|+|+.|+|||||+++|.+.... +..|....+ .=.++||||- ..|.........+||.++++.
T Consensus 6 liG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~ 71 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQALNGEEIR--YKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQ 71 (143)
T ss_pred EECCCCCCHHHHHHHHcCCCCC--cCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEe
Confidence 5899999999999999986652 222211111 1145899993 344555556667999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHHHH
Q 040835 77 DITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVL 154 (206)
Q Consensus 77 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~ 154 (206)
|++++.+.-. ..+... .+.|++-|+||+|+.. .....+..+++.+..|+. +|++|+.+++|++++.++|-
T Consensus 72 dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 72 DATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred cCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 9998643210 011111 3589999999999974 233566777888888874 89999999999999998763
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.76 E-value=9e-18 Score=134.75 Aligned_cols=112 Identities=22% Similarity=0.177 Sum_probs=78.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PT 121 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 121 (206)
...+.+||+||++.|...+......+|++++|+|++++.......+.+..+.... ..|+++++||+|+...... ..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~ 156 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENY 156 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHH
Confidence 3678999999999998888888889999999999996431112222222232221 2568999999998642211 12
Q ss_pred HHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 122 EDAKEFAEKE---GLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 122 ~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+++..+.... +++++++||++++|+++++++|...+
T Consensus 157 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 157 EEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3344444433 57899999999999999999988654
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=3.1e-17 Score=118.94 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=95.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCC------CC--------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFS------LD--------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|..++|||||+++|+..... .. .....+.+.......+...+..+.++||||+..|.......+
T Consensus 7 iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~ 86 (195)
T cd01884 7 TIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGA 86 (195)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHh
Confidence 5899999999999999864110 00 011234555555556666677889999999998877777888
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV---PTEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++++|+|+.....- .....+..+.. .++| +++++||+|+...... ...++..+....+ ++++.
T Consensus 87 ~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iip 162 (195)
T cd01884 87 AQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVR 162 (195)
T ss_pred hhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEE
Confidence 999999999999864321 22223333333 3466 7789999998532221 1234555555443 67999
Q ss_pred eccCCCCCHH
Q 040835 138 TSALESTNVE 147 (206)
Q Consensus 138 ~Sa~~~~~v~ 147 (206)
+||++|.|+.
T Consensus 163 iSa~~g~n~~ 172 (195)
T cd01884 163 GSALKALEGD 172 (195)
T ss_pred eeCccccCCC
Confidence 9999998853
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=129.33 Aligned_cols=155 Identities=24% Similarity=0.208 Sum_probs=110.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh----------hhhh-hHhHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER----------YRAV-TSAYYRGA 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~~~~~~~ 69 (206)
|+|.||+|||||+|+|++......+... |++.......+......+.++||+|... |... ....+..+
T Consensus 183 iiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a 261 (444)
T COG1160 183 IIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERA 261 (444)
T ss_pred EEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhc
Confidence 5899999999999999998886665444 7777777777777778899999999543 2111 23457789
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCC
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALEST 144 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~ 144 (206)
|.+++|+|++.+-+-.+. +....+.+ .+.++++++||.|+...+....++.+..... ..++++.+||+++.
T Consensus 262 ~vvllviDa~~~~~~qD~-~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 262 DVVLLVIDATEGISEQDL-RIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ 337 (444)
T ss_pred CEEEEEEECCCCchHHHH-HHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCC
Confidence 999999999987543332 23333333 4689999999999865433333333222222 24689999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 040835 145 NVELAFLTVLTEIYRI 160 (206)
Q Consensus 145 ~v~~~~~~l~~~i~~~ 160 (206)
++.++|+.+.......
T Consensus 338 ~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 338 GLDKLFEAIKEIYECA 353 (444)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 9999999887654433
No 215
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1e-17 Score=124.01 Aligned_cols=145 Identities=20% Similarity=0.176 Sum_probs=92.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC---------------------------C--CccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL---------------------------D--SKATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|+.++|||||+.+|+...-.. . .....+++.......+......+.+||
T Consensus 4 i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~liD 83 (219)
T cd01883 4 VIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFTILD 83 (219)
T ss_pred EecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEEEEE
Confidence 58999999999999997421100 0 011124444444555556678899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhh---H---HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC--CCCC---
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQS---F---DNVARWLEELRGHADKNIIIMLVGNKSDLETL--RAVP--- 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~--- 120 (206)
|||+..|...+...+..+|++|+|+|+++... + ............. ...|+++++||+|+... ....
T Consensus 84 tpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~~~~ 161 (219)
T cd01883 84 APGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEERYDE 161 (219)
T ss_pred CCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHHHHH
Confidence 99998887777777889999999999987421 0 1112221222221 23689999999998631 1111
Q ss_pred -HHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 040835 121 -TEDAKEFAEKEG-----LCFMETSALESTNVE 147 (206)
Q Consensus 121 -~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~ 147 (206)
.+++..+....+ ++++.+||++|+|++
T Consensus 162 i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 162 IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 122333344443 569999999999987
No 216
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=2.6e-17 Score=121.41 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=77.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------------ccccceeeEEEEEEE-----CCeEEEEEEEeCCCchhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------------KATIGVEFQTKTLVI-----HHKNVKAQIWDTAGQERY 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~ 58 (206)
|+|+.|+|||||+++|+........ ....+.++......+ ++..+.+.+|||||+..|
T Consensus 5 iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f 84 (213)
T cd04167 5 IAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNF 84 (213)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcch
Confidence 5899999999999999975443220 011122322222222 245688999999999999
Q ss_pred hhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 59 RAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 59 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
......++..+|++|+|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 85 ~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 85 MDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 8888889999999999999987655432 333333322 358999999999974
No 217
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.8e-17 Score=133.13 Aligned_cols=148 Identities=19% Similarity=0.175 Sum_probs=111.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh------hhhhHhHh--cCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY------RAVTSAYY--RGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------~~~~~~~~--~~~d~~ 72 (206)
++|+||||||||+|+|++........| |.|.+.++..+.....++.++|.||.... +...++++ ...|++
T Consensus 8 lvGNPNvGKTtlFN~LTG~~q~VgNwp--GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~i 85 (653)
T COG0370 8 LVGNPNVGKTTLFNALTGANQKVGNWP--GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLI 85 (653)
T ss_pred EecCCCccHHHHHHHHhccCceecCCC--CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEE
Confidence 589999999999999999887766666 46777777767666777999999994322 23344444 367999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|-|+|+++-+.- + .+..++.+ .+.|++++.|++|....+. ..-+.+++.+..|+|+++++|++++|++++...
T Consensus 86 vnVvDAtnLeRn--L-yltlQLlE---~g~p~ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~ 158 (653)
T COG0370 86 VNVVDATNLERN--L-YLTLQLLE---LGIPMILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRA 158 (653)
T ss_pred EEEcccchHHHH--H-HHHHHHHH---cCCCeEEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHH
Confidence 999999986421 1 12222333 4789999999999876333 345678888999999999999999999999998
Q ss_pred HHHHH
Q 040835 153 VLTEI 157 (206)
Q Consensus 153 l~~~i 157 (206)
+++..
T Consensus 159 i~~~~ 163 (653)
T COG0370 159 IIELA 163 (653)
T ss_pred HHHhc
Confidence 87643
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.74 E-value=3.7e-17 Score=131.19 Aligned_cols=111 Identities=23% Similarity=0.188 Sum_probs=74.8
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 122 (206)
..+.+|||||++.|..........+|++++|+|++++.........+..+... ...|+++++||+|+...... ..+
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc--CCCcEEEEEEeeccccchhHHHHHH
Confidence 57899999999988766666667789999999999642111111111222222 12468999999998643221 123
Q ss_pred HHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 123 DAKEFAEKE---GLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 123 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++..+.... +++++++||++++|++++++.|...+
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 344444332 47899999999999999999988765
No 219
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=119.81 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=103.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc-----hhhhhh----hHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ-----ERYRAV----TSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~~----~~~~~~~~d~ 71 (206)
|.|.||||||||+++++.........|.+ |.....-.++.....++++||||. ++.+.. ...+-.-.++
T Consensus 173 VaG~PNVGKSSlv~~lT~AkpEvA~YPFT--TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~ 250 (346)
T COG1084 173 VAGYPNVGKSSLVRKLTTAKPEVAPYPFT--TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGV 250 (346)
T ss_pred EecCCCCcHHHHHHHHhcCCCccCCCCcc--ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCe
Confidence 57999999999999999987766655552 333333344556678999999993 112111 2233346788
Q ss_pred EEEEeeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHH
Q 040835 72 AMLVYDITKRQ--SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVEL 148 (206)
Q Consensus 72 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 148 (206)
++|++|++... +.+....++..+.... +.|+++|.||+|......+ +++.......+ .....+++..+.+++.
T Consensus 251 IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 326 (346)
T COG1084 251 ILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISATKGCGLDK 326 (346)
T ss_pred EEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeeeehhhHHH
Confidence 99999998654 5677777888887765 3899999999998743332 23333333333 3467778888888887
Q ss_pred HHHHHHHHHHHH
Q 040835 149 AFLTVLTEIYRI 160 (206)
Q Consensus 149 ~~~~l~~~i~~~ 160 (206)
+-..+.....+.
T Consensus 327 ~~~~v~~~a~~~ 338 (346)
T COG1084 327 LREEVRKTALEP 338 (346)
T ss_pred HHHHHHHHhhch
Confidence 777766664443
No 220
>COG2262 HflX GTPases [General function prediction only]
Probab=99.72 E-value=3.9e-16 Score=121.03 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=114.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch---------hhhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE---------RYRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~ 71 (206)
++|.+|+|||||+|+|++........-..+.+.....+.+.+ +..+.+-||.|.- .|.+ +......+|+
T Consensus 197 LvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE~~~aDl 274 (411)
T COG2262 197 LVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEEVKEADL 274 (411)
T ss_pred EEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHHhhcCCE
Confidence 589999999999999998766544433334444455555554 4678899999942 3333 2334567999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
++.|+|++++.....+......+....-...|++++.||+|+..+.. ....+..... ..+.+||++++|++.+..
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLDLLRE 349 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHHHHHH
Confidence 99999999997777777776777766556699999999999764222 1122222222 488899999999999999
Q ss_pred HHHHHHHHHhhhhhcccC
Q 040835 152 TVLTEIYRIVSKKALTAN 169 (206)
Q Consensus 152 ~l~~~i~~~~~~~~~~~~ 169 (206)
.|.+.+......-....+
T Consensus 350 ~i~~~l~~~~~~~~l~lp 367 (411)
T COG2262 350 RIIELLSGLRTEVTLELP 367 (411)
T ss_pred HHHHHhhhcccceEEEcC
Confidence 999888866655444433
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=111.03 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=101.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------chhhhhhhHhHhc---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG----------QERYRAVTSAYYR--- 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~--- 67 (206)
++|..|||||||+|+|++.....-...|.|.|.....+.+++. +.++|.|| .+.+..+...|+.
T Consensus 29 F~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~ 105 (200)
T COG0218 29 FAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA 105 (200)
T ss_pred EEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence 5899999999999999997743333344466666666655443 78999999 3456666666665
Q ss_pred CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc----CCe--EEEeccC
Q 040835 68 GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE----GLC--FMETSAL 141 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~ 141 (206)
+-.++++++|+.......+ .++++.+.. .++|++|++||+|.....+.. ..+...++.. ... ++.+|+.
T Consensus 106 ~L~~vvlliD~r~~~~~~D-~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss~ 180 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLD-REMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSSL 180 (200)
T ss_pred hheEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEecc
Confidence 3567888999876543222 233333443 479999999999986533222 1123333322 222 7788999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 040835 142 ESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~i~~ 159 (206)
++.|++++...|.+.+..
T Consensus 181 ~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 181 KKKGIDELKAKILEWLKE 198 (200)
T ss_pred cccCHHHHHHHHHHHhhc
Confidence 999999999988877643
No 222
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=2.8e-16 Score=117.74 Aligned_cols=151 Identities=18% Similarity=0.154 Sum_probs=103.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh----h---hHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA----V---TSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~d~~i 73 (206)
++|.||+|||||+++|....-.....+.++..-..-.+++++. ..+.+-|+||..+-.. + ....+..++.++
T Consensus 201 LVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~ 279 (366)
T KOG1489|consen 201 LVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLL 279 (366)
T ss_pred eecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhceEE
Confidence 5899999999999999986554333333222222233444332 3389999999533211 1 223467899999
Q ss_pred EEeeCCCh---hhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHH
Q 040835 74 LVYDITKR---QSFDNVARWLEELRGHA--DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC-FMETSALESTNVE 147 (206)
Q Consensus 74 ~v~d~~~~---~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~ 147 (206)
||+|++.. ..++.+..+..++..+. -...|.+||+||+|+.+ .....+.++++...-+ ++++||+.++++.
T Consensus 280 fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e---ae~~~l~~L~~~lq~~~V~pvsA~~~egl~ 356 (366)
T KOG1489|consen 280 FVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE---AEKNLLSSLAKRLQNPHVVPVSAKSGEGLE 356 (366)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh---HHHHHHHHHHHHcCCCcEEEeeeccccchH
Confidence 99999988 77777776666665443 26789999999999842 1222246677766544 9999999999999
Q ss_pred HHHHHHHH
Q 040835 148 LAFLTVLT 155 (206)
Q Consensus 148 ~~~~~l~~ 155 (206)
++++.+.+
T Consensus 357 ~ll~~lr~ 364 (366)
T KOG1489|consen 357 ELLNGLRE 364 (366)
T ss_pred HHHHHHhh
Confidence 98887654
No 223
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=3.7e-16 Score=115.66 Aligned_cols=150 Identities=20% Similarity=0.216 Sum_probs=92.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccc-----------------------cceeeEEEE-------------EEECCeE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKAT-----------------------IGVEFQTKT-------------LVIHHKN 44 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~~~~ 44 (206)
++|+.++|||||+++|..+.+....... .+++..... -.+....
T Consensus 4 ~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (224)
T cd04165 4 VVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSS 83 (224)
T ss_pred EECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCC
Confidence 5899999999999999976554321100 011100000 0011224
Q ss_pred EEEEEEeCCCchhhhhhhHhHhc--CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP-- 120 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 120 (206)
..+.++||||++.|.......+. .+|++++|+|+..... .....++..+.. .++|+++++||+|+.......
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~~~~ 159 (224)
T cd04165 84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANILQET 159 (224)
T ss_pred cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHHHHH
Confidence 56899999999988665554443 6899999999876543 222334444433 358999999999985322111
Q ss_pred HHHHHHHHH--------------------------HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 121 TEDAKEFAE--------------------------KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 121 ~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
..++..+.. ...+++|.+|+.+|+|+++++..|.
T Consensus 160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 112222222 0124899999999999998887664
No 224
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.71 E-value=5.7e-16 Score=117.56 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=78.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc--------------------cccceeeEEEEEEECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK--------------------ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 60 (206)
|+|++|+|||||+++|+...-..... ...+.++......+.+.+..+.+|||||+..|..
T Consensus 7 ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~ 86 (267)
T cd04169 7 IISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSE 86 (267)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHH
Confidence 58999999999999998531111100 0013444555556677789999999999998887
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
.....++.+|++|+|+|+++.... ....++..... .++|+++++||+|+..
T Consensus 87 ~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 87 DTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 777888999999999999875322 22233333322 4689999999999854
No 225
>PRK12736 elongation factor Tu; Reviewed
Probab=99.70 E-value=3.8e-16 Score=124.92 Aligned_cols=140 Identities=18% Similarity=0.151 Sum_probs=92.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC--------------CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL--------------DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|+.++|||||+++|++..... ......+.+.......+......+.+|||||+++|.......+
T Consensus 17 i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~ 96 (394)
T PRK12736 17 TIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGA 96 (394)
T ss_pred EEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHH
Confidence 58999999999999998631100 0011235555555555655667889999999998877666667
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC---HHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAVP---TEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++++|+|+++...- .....+..+.. .++| +++++||+|+....... .+++..+....+ ++++.
T Consensus 97 ~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 172 (394)
T PRK12736 97 AQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIR 172 (394)
T ss_pred hhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEE
Confidence 889999999999864221 12222233333 3577 67899999986322211 234555555554 57999
Q ss_pred eccCCCC
Q 040835 138 TSALEST 144 (206)
Q Consensus 138 ~Sa~~~~ 144 (206)
+||+++.
T Consensus 173 vSa~~g~ 179 (394)
T PRK12736 173 GSALKAL 179 (394)
T ss_pred eeccccc
Confidence 9999983
No 226
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.70 E-value=7.2e-17 Score=119.05 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=97.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCCchhhhh-----hhHhHhcCCcEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYRA-----VTSAYYRGAVGAML 74 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~~i~ 74 (206)
++|+.+|||||+.+.++.+..+.+. ...+.|.......+ ....+.+.+||+||+..+.. .....+++++++||
T Consensus 4 LmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIy 82 (232)
T PF04670_consen 4 LMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIY 82 (232)
T ss_dssp EEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEE
T ss_pred EEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEE
Confidence 5899999999999998886553333 22233332222223 23457899999999865433 45778999999999
Q ss_pred EeeCCChhhHHHHHHH---HHHHHhcCCCCCcEEEEEeCCCCCcCCC--C----CHHHHHHHHHHcC---CeEEEeccCC
Q 040835 75 VYDITKRQSFDNVARW---LEELRGHADKNIIIMLVGNKSDLETLRA--V----PTEDAKEFAEKEG---LCFMETSALE 142 (206)
Q Consensus 75 v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~----~~~~~~~~~~~~~---~~~~~~Sa~~ 142 (206)
|+|+.+.+-.+.+..+ +..+.+. +++..+.|+++|+|+..+.. . ..+.+.+.+...+ +.++.||..+
T Consensus 83 V~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 83 VFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD 161 (232)
T ss_dssp EEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS
T ss_pred EEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC
Confidence 9999954433444443 3333333 47899999999999853111 0 1122333444455 7899999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q 040835 143 STNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 143 ~~~v~~~~~~l~~~i~~~~~ 162 (206)
. .+-++|..+++.+..+.+
T Consensus 162 ~-Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 162 E-SLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp T-HHHHHHHHHHHTTSTTHC
T ss_pred c-HHHHHHHHHHHHHcccHH
Confidence 5 788999999988765543
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=4.4e-16 Score=124.30 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=112.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH-KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
+||+-.-|||||+.++....+.......++-.+..+.+..+. ....+.++||||++.|..++..-..-+|++|+|++++
T Consensus 10 imGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~d 89 (509)
T COG0532 10 IMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAAD 89 (509)
T ss_pred EeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEcc
Confidence 589999999999999999888766655555556666666542 3457899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC---------CeEEEeccCCCCCHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG---------LCFMETSALESTNVELAF 150 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v~~~~ 150 (206)
|.-- .+....+......++|++|++||+|... .+......-..++| ..++.+||++|+|+++++
T Consensus 90 DGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL 162 (509)
T COG0532 90 DGVM----PQTIEAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELL 162 (509)
T ss_pred CCcc----hhHHHHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHH
Confidence 8521 1222223333346899999999999862 23333333333333 358999999999999999
Q ss_pred HHHHHHHH
Q 040835 151 LTVLTEIY 158 (206)
Q Consensus 151 ~~l~~~i~ 158 (206)
..++-...
T Consensus 163 ~~ill~ae 170 (509)
T COG0532 163 ELILLLAE 170 (509)
T ss_pred HHHHHHHH
Confidence 88775443
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.69 E-value=6.8e-16 Score=123.57 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=92.7
Q ss_pred CccCCCCCHHHHHHHHhcC-------CCC-----C--CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARD-------EFS-----L--DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~-------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|.+++|||||+++|++. .+. + ......+.+.......+...+..+.++||||++.|.......+
T Consensus 17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~ 96 (396)
T PRK12735 17 TIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGA 96 (396)
T ss_pred EECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhh
Confidence 5899999999999999862 100 0 0011234555555555555667889999999998877677778
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCC---CHHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAV---PTEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++++|+|+.+... ....+.+..+.. .++|.+ +++||+|+...... ...++..+...++ +++++
T Consensus 97 ~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~ 172 (396)
T PRK12735 97 AQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIR 172 (396)
T ss_pred ccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEe
Confidence 89999999999987432 122233333332 357755 57999998642221 1224555665553 67999
Q ss_pred eccCCCCC
Q 040835 138 TSALESTN 145 (206)
Q Consensus 138 ~Sa~~~~~ 145 (206)
+|+.++.+
T Consensus 173 ~Sa~~g~n 180 (396)
T PRK12735 173 GSALKALE 180 (396)
T ss_pred cchhcccc
Confidence 99999853
No 229
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=4.3e-16 Score=116.18 Aligned_cols=153 Identities=20% Similarity=0.189 Sum_probs=99.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch------hh------hhhhHhHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE------RY------RAVTSAYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~~------~~~~~~~~~~ 68 (206)
|+|+||+|||||.|.+.+..+.+.+..+.+++.. ....+......+.++||||.- .+ .......+..
T Consensus 77 vIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~ 155 (379)
T KOG1423|consen 77 VIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQN 155 (379)
T ss_pred EEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhh
Confidence 5899999999999999999998888766444333 333344456789999999921 11 1123445678
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC-------------CCC--HHHHH-HHHH---
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR-------------AVP--TEDAK-EFAE--- 129 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~~~--~~~~~-~~~~--- 129 (206)
||.+++++|+++....-. .+.+..+..+ ...|-+++.||.|..... .+. ..++. ++..
T Consensus 156 AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~ 232 (379)
T KOG1423|consen 156 ADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPS 232 (379)
T ss_pred CCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCc
Confidence 999999999996332111 1223333333 368899999999974311 111 11111 1111
Q ss_pred ------HcCC----eEEEeccCCCCCHHHHHHHHHHHH
Q 040835 130 ------KEGL----CFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 130 ------~~~~----~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..|. .+|.+||+.|+||+++-++|....
T Consensus 233 ~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 233 DEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred ccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1122 389999999999999999887654
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=7.2e-16 Score=123.47 Aligned_cols=140 Identities=18% Similarity=0.139 Sum_probs=92.7
Q ss_pred CccCCCCCHHHHHHHHhcCCC------C------C--CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEF------S------L--DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|..++|||||+++|++... . . ......+.+.....+.++..+..+.+|||||++.|........
T Consensus 17 i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~ 96 (394)
T TIGR00485 17 TIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGA 96 (394)
T ss_pred EEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHH
Confidence 589999999999999984200 0 0 0011135556666666666677899999999998876666667
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCCC---HHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAVP---TEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++++|+|+.+..... ..+.+..+.. .++|.+ +++||+|+....... .+++..+...++ ++++.
T Consensus 97 ~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~ 172 (394)
T TIGR00485 97 AQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIR 172 (394)
T ss_pred hhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEE
Confidence 7889999999998742211 1222233332 256755 689999986422211 234666666664 68999
Q ss_pred eccCCCC
Q 040835 138 TSALEST 144 (206)
Q Consensus 138 ~Sa~~~~ 144 (206)
+|+.++.
T Consensus 173 vSa~~g~ 179 (394)
T TIGR00485 173 GSALKAL 179 (394)
T ss_pred Ccccccc
Confidence 9999875
No 231
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.67 E-value=1.7e-16 Score=127.13 Aligned_cols=157 Identities=25% Similarity=0.300 Sum_probs=116.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.|+|||||+-.|+...+.+..++-.. .......+....+...|+|++..+.-.......++.||+++++|+.++
T Consensus 14 liGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~ 91 (625)
T KOG1707|consen 14 LIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDD 91 (625)
T ss_pred EECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCC
Confidence 589999999999999999988766544311 111112222345668999998766666666788899999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHH-HHHHHHHcC-C-eEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNV-ARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTED-AKEFAEKEG-L-CFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+++++.+ ..|+..++...+ .++|+|+|+||.|.......+.+. +..+..++. + ..++|||++-.++.++|+...
T Consensus 92 ~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaq 171 (625)
T KOG1707|consen 92 ESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQ 171 (625)
T ss_pred hHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhh
Confidence 9999988 459999988763 679999999999986433332222 344433332 2 379999999999999999887
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.++.
T Consensus 172 KaVih 176 (625)
T KOG1707|consen 172 KAVIH 176 (625)
T ss_pred heeec
Confidence 76643
No 232
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.2e-16 Score=107.40 Aligned_cols=149 Identities=16% Similarity=0.206 Sum_probs=111.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|..|+|||||++.|.+... ....||...+.+. +...++.++.+|.+|+..-...|..++..+|++++.+|+-|
T Consensus 25 FlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~----l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d 99 (193)
T KOG0077|consen 25 FLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEE----LSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD 99 (193)
T ss_pred EEeecCCchhhHHHHHccccc-cccCCCcCCChHH----heecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh
Confidence 479999999999999887655 4455554444443 33456889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH---HcC--------------CeEEEeccCC
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE---KEG--------------LCFMETSALE 142 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~Sa~~ 142 (206)
.+.+...+.-++.+.... -.++|+++.+||+|... ..++++.+.... ..+ +.+|.||+..
T Consensus 100 ~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~ 177 (193)
T KOG0077|consen 100 QERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVR 177 (193)
T ss_pred HHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEc
Confidence 998888777666654333 25799999999999864 234444332221 111 2478899999
Q ss_pred CCCHHHHHHHHHHH
Q 040835 143 STNVELAFLTVLTE 156 (206)
Q Consensus 143 ~~~v~~~~~~l~~~ 156 (206)
+.+.-+.|.|+-+.
T Consensus 178 ~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 178 KMGYGEGFKWLSQY 191 (193)
T ss_pred cCccceeeeehhhh
Confidence 98888888887654
No 233
>CHL00071 tufA elongation factor Tu
Probab=99.66 E-value=2.3e-15 Score=121.08 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=94.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC--------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD--------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|.+++|||||+++|++..-... .....+++.......+...+..+.++||||+..|.......+
T Consensus 17 i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~ 96 (409)
T CHL00071 17 TIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGA 96 (409)
T ss_pred EECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHH
Confidence 589999999999999997421100 011134555554555555667789999999988877777778
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV---PTEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++++|+|+..... ......+..+.. .++| +++++||+|+...... ...++..+....+ ++++.
T Consensus 97 ~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~ 172 (409)
T CHL00071 97 AQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVS 172 (409)
T ss_pred HhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEE
Confidence 89999999999986432 222233333332 3578 7789999998642221 1134555555544 67999
Q ss_pred eccCCCCCH
Q 040835 138 TSALESTNV 146 (206)
Q Consensus 138 ~Sa~~~~~v 146 (206)
+|+.++.++
T Consensus 173 ~Sa~~g~n~ 181 (409)
T CHL00071 173 GSALLALEA 181 (409)
T ss_pred cchhhcccc
Confidence 999998754
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=2.9e-15 Score=114.29 Aligned_cols=144 Identities=21% Similarity=0.185 Sum_probs=90.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc-----c-----------cceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA-----T-----------IGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
++|.+|+|||||+++|+...-...... + .+.+.......+.+....+.+|||||+..|...+..
T Consensus 4 ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~ 83 (268)
T cd04170 4 LVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRA 83 (268)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHH
Confidence 589999999999999985322111000 0 012222223334445678999999999888888888
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEe--ccCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMET--SALE 142 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~ 142 (206)
++..+|++++|+|+++.........| ..+.. .++|.++++||+|+... ...+....+....+.+++.+ ...+
T Consensus 84 ~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~--~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 84 ALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA--DFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC--CHHHHHHHHHHHhCCCeEEEEecccC
Confidence 99999999999999876544333333 22222 46899999999998642 11233444444456554433 4455
Q ss_pred CCCHHHHH
Q 040835 143 STNVELAF 150 (206)
Q Consensus 143 ~~~v~~~~ 150 (206)
+.++..+.
T Consensus 158 ~~~~~~~v 165 (268)
T cd04170 158 GDDFKGVV 165 (268)
T ss_pred CCceeEEE
Confidence 55544333
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.66 E-value=1.9e-15 Score=115.26 Aligned_cols=138 Identities=15% Similarity=0.131 Sum_probs=87.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC----------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh----------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD----------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA---------- 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------- 60 (206)
|+|.+|+|||||+|+|++..+... ..++.+.......+..++..+.+.+|||||......
T Consensus 9 vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~ 88 (276)
T cd01850 9 VVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVD 88 (276)
T ss_pred EEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHH
Confidence 589999999999999999877544 233434444445555567778999999999422110
Q ss_pred ----------------hhHhHhc--CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC--CCC
Q 040835 61 ----------------VTSAYYR--GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR--AVP 120 (206)
Q Consensus 61 ----------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~ 120 (206)
.+...+. .+|+++++++.+...--..-...+..+. ..+|+++|+||+|+.... ...
T Consensus 89 yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~~e~~~~ 164 (276)
T cd01850 89 YIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS----KRVNIIPVIAKADTLTPEELKEF 164 (276)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh----ccCCEEEEEECCCcCCHHHHHHH
Confidence 0101222 4678888888765221111122233332 258999999999985422 223
Q ss_pred HHHHHHHHHHcCCeEEEeccCC
Q 040835 121 TEDAKEFAEKEGLCFMETSALE 142 (206)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~Sa~~ 142 (206)
...+.+.+..+++++|......
T Consensus 165 k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 165 KQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHcCCceECCCCCc
Confidence 4556677778899998776543
No 236
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.66 E-value=3.8e-15 Score=122.53 Aligned_cols=110 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC--------------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD--------------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 60 (206)
|+|++++|||||+++|+...-... .....+.++......+.+.+..+.+|||||+..|..
T Consensus 15 IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~ 94 (526)
T PRK00741 15 IISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSE 94 (526)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHH
Confidence 589999999999999974111000 001123344444455566678899999999999888
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
....+++.+|++|+|+|+++.... ....++..... .++|+++++||+|+.
T Consensus 95 ~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 95 DTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred HHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 778889999999999999875322 22333333322 479999999999974
No 237
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.66 E-value=1.2e-15 Score=115.91 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=78.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC----------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD----------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
++|.+|+|||||+++|+...-... .....+.++......+.+.+..+.+|||||+..+...+..
T Consensus 4 ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 83 (270)
T cd01886 4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVER 83 (270)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 589999999999999974211000 0011244555555555566788999999999988888899
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
.++.+|++|+|+|+.+...-.. ...+..+.. .++|+++++||+|+.+
T Consensus 84 ~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 84 SLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 9999999999999987542222 222233332 4689999999999863
No 238
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=4.7e-15 Score=108.09 Aligned_cols=154 Identities=13% Similarity=0.143 Sum_probs=91.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccce---eeEEEEEEECCeEEEEEEEeCCCchhhhhhh-----HhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGV---EFQTKTLVIHHKNVKAQIWDTAGQERYRAVT-----SAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~~d~~ 72 (206)
|+|.+|+|||||+|+|++.........+.+. +.....+.. .....+.+||+||........ ...+..+|++
T Consensus 6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~ 84 (197)
T cd04104 6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFF 84 (197)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEE
Confidence 5899999999999999986654332222221 111111111 112468999999975322222 2226778988
Q ss_pred EEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-----------CCHHHHHHHHH----HcC---C
Q 040835 73 MLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRA-----------VPTEDAKEFAE----KEG---L 133 (206)
Q Consensus 73 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~~---~ 133 (206)
+++.+.. +... ..|+..+... +.|+++|+||+|+..... ...+++++.+. ..+ -
T Consensus 85 l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p 157 (197)
T cd04104 85 IIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEP 157 (197)
T ss_pred EEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8875422 2222 3455555543 589999999999832111 01112222222 222 2
Q ss_pred eEEEeccC--CCCCHHHHHHHHHHHHHHHhh
Q 040835 134 CFMETSAL--ESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 134 ~~~~~Sa~--~~~~v~~~~~~l~~~i~~~~~ 162 (206)
++|.+|+. .+.|+..+.+.++..+.++..
T Consensus 158 ~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 158 PVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 58999998 568999999999888876543
No 239
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.65 E-value=3.8e-15 Score=112.93 Aligned_cols=160 Identities=16% Similarity=0.078 Sum_probs=103.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh----h---hHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA----V---TSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~d~~i 73 (206)
++|.|++|||||++++..-.......|.++..-..-.+.+ .....|.+-|+||..+-.. + -...+..+.+++
T Consensus 164 LVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~ 242 (369)
T COG0536 164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLL 242 (369)
T ss_pred cccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeE
Confidence 6899999999999999986655444444333333333333 3446689999999533211 1 223456788999
Q ss_pred EEeeCCChh---hHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEE-eccCCCCCHH
Q 040835 74 LVYDITKRQ---SFDNVARWLEELRGHA--DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFME-TSALESTNVE 147 (206)
Q Consensus 74 ~v~d~~~~~---s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~~v~ 147 (206)
+|+|++..+ ..++......++..+. -.++|.+||+||+|+....+........+....+...+. +|+.+++|++
T Consensus 243 hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~ 322 (369)
T COG0536 243 HVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLD 322 (369)
T ss_pred EEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHH
Confidence 999998543 3444444444444432 257999999999996542232223333444444443222 9999999999
Q ss_pred HHHHHHHHHHHHHh
Q 040835 148 LAFLTVLTEIYRIV 161 (206)
Q Consensus 148 ~~~~~l~~~i~~~~ 161 (206)
++...+.+.+.+..
T Consensus 323 ~L~~~~~~~l~~~~ 336 (369)
T COG0536 323 ELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988877765
No 240
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=9.1e-15 Score=113.17 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=52.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccc--eeeEEEEEE-------------------ECC-eEEEEEEEeCCCc---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIG--VEFQTKTLV-------------------IHH-KNVKAQIWDTAGQ--- 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~--~~~~~~~~~-------------------~~~-~~~~~~i~D~~G~--- 55 (206)
++|.|+||||||+++|++........|..+ .+.....+. .++ ..+.+.+||+||.
T Consensus 3 ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~g 82 (318)
T cd01899 3 LVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPG 82 (318)
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCC
Confidence 589999999999999999875432222211 111111110 112 3478999999997
Q ss_pred -hhhhhhhHh---HhcCCcEEEEEeeCC
Q 040835 56 -ERYRAVTSA---YYRGAVGAMLVYDIT 79 (206)
Q Consensus 56 -~~~~~~~~~---~~~~~d~~i~v~d~~ 79 (206)
+.+..+.+. .++.+|++++|+|+.
T Consensus 83 a~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 83 AHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 444444444 489999999999997
No 241
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.65 E-value=2.5e-15 Score=110.88 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=74.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc--------------cccceeeEEE--EEEEC--------CeEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK--------------ATIGVEFQTK--TLVIH--------HKNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~--------------~~~~~~~~~~--~~~~~--------~~~~~~~i~D~~G~~ 56 (206)
++|..++|||||+++|+...-..... ...+.++... ...+. +....+.+|||||+.
T Consensus 5 iiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~ 84 (222)
T cd01885 5 IIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHV 84 (222)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCcc
Confidence 58999999999999998642111000 0011222221 22222 336889999999999
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
.|......+++.+|++++|+|+.++........+ ..... .++|+++++||+|+.
T Consensus 85 ~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 85 DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence 9999999999999999999999987554432222 22222 358999999999974
No 242
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=3.6e-15 Score=121.64 Aligned_cols=146 Identities=24% Similarity=0.175 Sum_probs=91.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC------------c-------------------cccceeeEEEEEEECCeEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS------------K-------------------ATIGVEFQTKTLVIHHKNVKAQI 49 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~~~~i 49 (206)
++|..++|||||+++|+...-.... . ..-+.++......+......+.+
T Consensus 32 iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~~~i~~ 111 (474)
T PRK05124 32 TCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFII 111 (474)
T ss_pred EECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCCcEEEE
Confidence 5899999999999999864321111 0 00123344444445555678999
Q ss_pred EeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH----HH
Q 040835 50 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED----AK 125 (206)
Q Consensus 50 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~ 125 (206)
|||||++.|.......+..+|++++|+|+.....-.. .+....+.... ..|+++++||+|+.........+ +.
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~~i~~~l~ 188 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFERIREDYL 188 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHHHHHHHHH
Confidence 9999998886655556799999999999976432111 11111122211 24789999999986422211222 22
Q ss_pred HHHHHc----CCeEEEeccCCCCCHHHH
Q 040835 126 EFAEKE----GLCFMETSALESTNVELA 149 (206)
Q Consensus 126 ~~~~~~----~~~~~~~Sa~~~~~v~~~ 149 (206)
.+.... .++++.+||++++|++++
T Consensus 189 ~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 189 TFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 333333 367999999999999865
No 243
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=1.4e-15 Score=112.24 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=104.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-------YRAVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~~i 73 (206)
++|.+|+|||||+|+|+.+...+......+.+....... ......+.+||+||.++ +......++...|.++
T Consensus 44 i~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL 122 (296)
T COG3596 44 LMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVL 122 (296)
T ss_pred EecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEE
Confidence 589999999999999997666555533333333222111 12235689999999543 7777889999999999
Q ss_pred EEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC-------CCCHHHHH-----------HHHHHcCCeE
Q 040835 74 LVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR-------AVPTEDAK-----------EFAEKEGLCF 135 (206)
Q Consensus 74 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~-----------~~~~~~~~~~ 135 (206)
++++..|+.---+.+.|.+.+... ...++++++|.+|...+- ......++ ++++. -.|+
T Consensus 123 ~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-V~pV 199 (296)
T COG3596 123 WLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-VKPV 199 (296)
T ss_pred EeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-cCCe
Confidence 999999876433334444444332 348999999999975320 01111111 11221 2368
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 136 METSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 136 ~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+..+...++|++++...++..+...
T Consensus 200 ~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 200 VAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred EEeccccCccHHHHHHHHHHhCccc
Confidence 8888999999999999999887643
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.63 E-value=5.9e-15 Score=118.53 Aligned_cols=145 Identities=25% Similarity=0.204 Sum_probs=92.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-------------------------------ccccceeeEEEEEEECCeEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-------------------------------KATIGVEFQTKTLVIHHKNVKAQI 49 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~i 49 (206)
++|+.++|||||+++|+...-.... ...-+.+.......+...+..+.+
T Consensus 5 ~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~~~l 84 (406)
T TIGR02034 5 TCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIV 84 (406)
T ss_pred EECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeEEEE
Confidence 5899999999999999753211110 001233344444455556678999
Q ss_pred EeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH----HHHH
Q 040835 50 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT----EDAK 125 (206)
Q Consensus 50 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~ 125 (206)
|||||++.|.......+..+|++|+|+|+.....-.. .+.+..+.... ..++++++||+|+........ ++..
T Consensus 85 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 85 ADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 9999999987666677899999999999986532111 11111222221 246889999999864221111 2233
Q ss_pred HHHHHcC---CeEEEeccCCCCCHHH
Q 040835 126 EFAEKEG---LCFMETSALESTNVEL 148 (206)
Q Consensus 126 ~~~~~~~---~~~~~~Sa~~~~~v~~ 148 (206)
.+....+ ++++++||++|+|+++
T Consensus 162 ~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 162 AFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHcCCCCccEEEeecccCCCCcc
Confidence 3334444 4699999999999885
No 245
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.63 E-value=8e-15 Score=110.39 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=102.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------AVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~i 73 (206)
++|.|++|||||+++|++........+. +|.....-++...+..+++.|+||.-.-. .......++||++|
T Consensus 68 lVGfPsvGKStLL~~LTnt~seva~y~F--TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIi 145 (365)
T COG1163 68 LVGFPSVGKSTLLNKLTNTKSEVADYPF--TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLII 145 (365)
T ss_pred EEcCCCccHHHHHHHHhCCCccccccCc--eecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEE
Confidence 5899999999999999998776555554 34444444555667889999999853321 22445678999999
Q ss_pred EEeeCCChhh-HHHHHHHHHHHHhc-------------------------------------------------------
Q 040835 74 LVYDITKRQS-FDNVARWLEELRGH------------------------------------------------------- 97 (206)
Q Consensus 74 ~v~d~~~~~s-~~~~~~~~~~~~~~------------------------------------------------------- 97 (206)
+|+|+....+ .+.+.+.+....-.
T Consensus 146 iVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvT 225 (365)
T COG1163 146 IVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVT 225 (365)
T ss_pred EEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCc
Confidence 9999986543 33333222211100
Q ss_pred ---------C-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 98 ---------A-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 98 ---------~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
. -.-+|.++|+||+|+.. .++...+.+.. ..+.+||..+.|++++.+.+.+.+
T Consensus 226 lDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 226 LDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred HHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 0 01378899999999863 55556666554 688899999999998887776654
No 246
>PRK13351 elongation factor G; Reviewed
Probab=99.62 E-value=1.1e-14 Score=124.29 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=79.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCC--------C-----CCc---cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFS--------L-----DSK---ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~--------~-----~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|..++|||||+++|+...-. . ... ...+.++......+.+....+.+|||||+.+|...+..
T Consensus 13 iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~ 92 (687)
T PRK13351 13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVER 92 (687)
T ss_pred EECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 5899999999999999853210 0 000 01233343334445566788999999999999888999
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 93 ~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~ 138 (687)
T PRK13351 93 SLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRV 138 (687)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCC
Confidence 99999999999999987655444444 22322 468999999999975
No 247
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.62 E-value=1.5e-14 Score=117.18 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=98.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC--------------------------C---CccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL--------------------------D---SKATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~--------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|+.++|||||+.+|+...-.. . .....+.++......+......+.++|
T Consensus 12 i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liD 91 (447)
T PLN00043 12 VIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVID 91 (447)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEEEEEE
Confidence 58999999999999987521100 0 011124455555555666778899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhH-------HHHHHHHHHHHhcCCCCC-cEEEEEeCCCCCcCCCCC---
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSF-------DNVARWLEELRGHADKNI-IIMLVGNKSDLETLRAVP--- 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~~~--- 120 (206)
+||+++|.......+..+|++|+|+|+++.. + ...++.+..... .++ ++++++||+|+.. ...+
T Consensus 92 tPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~-~~~~~~~ 166 (447)
T PLN00043 92 APGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATT-PKYSKAR 166 (447)
T ss_pred CCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCc-hhhhHHH
Confidence 9999999988888999999999999998731 2 122332222222 356 4788999999752 1111
Q ss_pred ----HHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 040835 121 ----TEDAKEFAEKEG-----LCFMETSALESTNVEL 148 (206)
Q Consensus 121 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 148 (206)
.+++..++...| ++++++|+++|+|+.+
T Consensus 167 ~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 167 YDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 345666666665 5799999999999854
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=99.61 E-value=1.7e-14 Score=115.45 Aligned_cols=140 Identities=17% Similarity=0.149 Sum_probs=92.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCC------C--------CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFS------L--------DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|..++|||||+++|+..... . ......+.+.......+...+..+.++||||+..|.......+
T Consensus 17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~ 96 (396)
T PRK00049 17 TIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGA 96 (396)
T ss_pred EEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhh
Confidence 5899999999999999973110 0 0011235555555555555567889999999988877777778
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcCCCC---CHHHHHHHHHHc-----CCeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETLRAV---PTEDAKEFAEKE-----GLCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~~~~ 137 (206)
..+|++++|+|+.++.. .....++..+.. .++|.+ +++||+|+...... ...++..+.... +++++.
T Consensus 97 ~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~ 172 (396)
T PRK00049 97 AQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIR 172 (396)
T ss_pred ccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEE
Confidence 99999999999986432 222333333333 357875 68999998642221 112344444443 367999
Q ss_pred eccCCCC
Q 040835 138 TSALEST 144 (206)
Q Consensus 138 ~Sa~~~~ 144 (206)
+|++++.
T Consensus 173 iSa~~g~ 179 (396)
T PRK00049 173 GSALKAL 179 (396)
T ss_pred eeccccc
Confidence 9999875
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=99.61 E-value=1.1e-14 Score=118.45 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=94.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC------CC--------CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEF------SL--------DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|..++|||||+++|+.... .. ......+.+.......+...+..+.+||+||++.|.......+
T Consensus 86 iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~ 165 (478)
T PLN03126 86 TIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA 165 (478)
T ss_pred EECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999995211 00 0112234555555555555667889999999999887777778
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHc-----CCeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV---PTEDAKEFAEKE-----GLCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~~~~~ 137 (206)
..+|++++|+|+.+.... ..++++..+.. .++| +++++||+|+...... ..+++..+.... .++++.
T Consensus 166 ~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp 241 (478)
T PLN03126 166 AQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIIS 241 (478)
T ss_pred hhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEE
Confidence 899999999999865322 22333333333 3577 7889999998642211 112445555554 467999
Q ss_pred eccCCCCCH
Q 040835 138 TSALESTNV 146 (206)
Q Consensus 138 ~Sa~~~~~v 146 (206)
+|+.++.++
T Consensus 242 ~Sa~~g~n~ 250 (478)
T PLN03126 242 GSALLALEA 250 (478)
T ss_pred EEccccccc
Confidence 999988543
No 250
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=8.8e-15 Score=116.71 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHhcCCCCCCC-------------ccccceeeEEEEEEE---CCeEEEEEEEeCCCchhhhhhhHhHhcC
Q 040835 5 SAVGKSQLLARFARDEFSLDS-------------KATIGVEFQTKTLVI---HHKNVKAQIWDTAGQERYRAVTSAYYRG 68 (206)
Q Consensus 5 ~~~GKTtLl~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 68 (206)
-.=|||||..+|+...-.... ..--|+++...+..+ ++..+.++++||||+-+|.......+..
T Consensus 69 VDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaa 148 (650)
T KOG0462|consen 69 VDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAA 148 (650)
T ss_pred ecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhh
Confidence 346999999999863110000 111245555444433 3455899999999999999888888999
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAKEFAEKEGLCFMETSALESTNVE 147 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 147 (206)
+|++|+|+|++..........++..+. .+.-+|.|+||+|+...+. .-..++.+++.....+++.+||++|.|+.
T Consensus 149 c~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~ 224 (650)
T KOG0462|consen 149 CDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVE 224 (650)
T ss_pred cCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHH
Confidence 999999999998766555555555554 3677999999999953211 11233334444445579999999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 148 LAFLTVLTEIYR 159 (206)
Q Consensus 148 ~~~~~l~~~i~~ 159 (206)
++|..+++++..
T Consensus 225 ~lL~AII~rVPp 236 (650)
T KOG0462|consen 225 ELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHHhhCCC
Confidence 999999987743
No 251
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.2e-14 Score=114.51 Aligned_cols=148 Identities=20% Similarity=0.224 Sum_probs=109.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|||.-.=|||||+..|.+..+.......++-.+....+.++ ....+.+.||||+..|..++..-...+|++++|+.+.|
T Consensus 158 iMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD 236 (683)
T KOG1145|consen 158 IMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD 236 (683)
T ss_pred EeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC
Confidence 58999999999999999988765554444444555555555 34778999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC---------CeEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG---------LCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~v~~~~~ 151 (206)
.- ..+.+..+......++|++|.+||+|.+ ..+.+....-...+| ..++++||++|+|++.+-+
T Consensus 237 GV----mpQT~EaIkhAk~A~VpiVvAinKiDkp---~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~e 309 (683)
T KOG1145|consen 237 GV----MPQTLEAIKHAKSANVPIVVAINKIDKP---GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEE 309 (683)
T ss_pred Cc----cHhHHHHHHHHHhcCCCEEEEEeccCCC---CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHH
Confidence 52 1223333444445689999999999974 334444443333333 4689999999999998887
Q ss_pred HHHHH
Q 040835 152 TVLTE 156 (206)
Q Consensus 152 ~l~~~ 156 (206)
.++-.
T Consensus 310 aill~ 314 (683)
T KOG1145|consen 310 AILLL 314 (683)
T ss_pred HHHHH
Confidence 66543
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.60 E-value=9.7e-15 Score=97.47 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=64.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIWDTAGQER---------YRAVTSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d 70 (206)
|+|.+|+|||||+|+|++......+ .+..+.......+.+++ ..+.++||||... ........+..+|
T Consensus 4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 81 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQISKSD 81 (116)
T ss_dssp EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTES
T ss_pred EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCC
Confidence 5899999999999999986432222 22212222223334444 4457999999532 1112333448999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
++++|+|.+++.. +....++..+. .+.|+++|+||
T Consensus 82 ~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 82 LIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred EEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999877322 22334444442 47999999998
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.60 E-value=4.3e-14 Score=102.98 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=90.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------h-h---hHhHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------A-V---TSAYYRGA 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~---~~~~~~~~ 69 (206)
++|.+|+|||||+|+|++...........+.+...........+..+.++||||..... . + ......+.
T Consensus 5 lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~ 84 (196)
T cd01852 5 LVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGP 84 (196)
T ss_pred EECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCC
Confidence 58999999999999999976543332111222222222222244678999999954321 1 1 11224678
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCC------CHHHHHHHHHHcCCeEEEeccC
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAV------PTEDAKEFAEKEGLCFMETSAL 141 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~ 141 (206)
|++|+|+++.+ .+.. ....+..+....+ .-.++++++|+.|......+ .......+.+..+-.++..+..
T Consensus 85 ~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~ 162 (196)
T cd01852 85 HAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNK 162 (196)
T ss_pred EEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCC
Confidence 99999999876 2221 2223333333222 22578899999996532211 1244566666666666555543
Q ss_pred -----CCCCHHHHHHHHHHHHHH
Q 040835 142 -----ESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 142 -----~~~~v~~~~~~l~~~i~~ 159 (206)
.+.++.+++..+.+.+..
T Consensus 163 ~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 163 AKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CCcchhHHHHHHHHHHHHHHHHh
Confidence 455667666666665554
No 254
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.3e-15 Score=116.32 Aligned_cols=160 Identities=26% Similarity=0.263 Sum_probs=109.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-h--------hhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-A--------VTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~--------~~~~~~~~~d~ 71 (206)
++|+||||||||+|.|...+....++.. |+|.......++..++++.+.||+|..+-. . .....+..+|+
T Consensus 273 IvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~adv 351 (531)
T KOG1191|consen 273 IVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADV 351 (531)
T ss_pred EEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCE
Confidence 5899999999999999999987776554 788888888888888999999999976511 1 12345678999
Q ss_pred EEEEeeCCC--hhhHHHHHHHHHHHHhcC------CCCCcEEEEEeCCCCCcC-CCCCHHHHHHHHHHcC---Ce-EEEe
Q 040835 72 AMLVYDITK--RQSFDNVARWLEELRGHA------DKNIIIMLVGNKSDLETL-RAVPTEDAKEFAEKEG---LC-FMET 138 (206)
Q Consensus 72 ~i~v~d~~~--~~s~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~---~~-~~~~ 138 (206)
+++|+|+.. -++-..+.+.+....... ....|++++.||.|+... ++....... +....+ .+ ..++
T Consensus 352 i~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~~~~~i~~~v 430 (531)
T KOG1191|consen 352 ILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGRSVFPIVVEV 430 (531)
T ss_pred EEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccCcccceEEEe
Confidence 999999943 222223333443333222 134789999999998643 222221111 122122 33 4459
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 139 SALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 139 Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
|+.+++|+..+...+...+.....
T Consensus 431 s~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 431 SCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred eechhhhHHHHHHHHHHHHHHhhc
Confidence 999999999999988888776643
No 255
>PLN03127 Elongation factor Tu; Provisional
Probab=99.59 E-value=4.4e-14 Score=114.36 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=93.4
Q ss_pred CccCCCCCHHHHHHHHhcC------CCCCC--------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARD------EFSLD--------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|..++|||||+++|.+. ..... .....++++......+...+..+.++||||+..|.......+
T Consensus 66 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~ 145 (447)
T PLN03127 66 TIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 145 (447)
T ss_pred EECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHH
Confidence 5899999999999999732 11000 011134556655666666667899999999988876666666
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC---HHHHHHHHHHc-----CCeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAVP---TEDAKEFAEKE-----GLCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-----~~~~~~ 137 (206)
..+|++++|+|+++... ....+.+..+.. .++| +++++||+|+....... ..++..+.... .++++.
T Consensus 146 ~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip 221 (447)
T PLN03127 146 AQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIR 221 (447)
T ss_pred hhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEE
Confidence 78999999999986532 122233333333 3578 57889999986422211 11233333332 357888
Q ss_pred eccC---CCCC-------HHHHHHHHHHH
Q 040835 138 TSAL---ESTN-------VELAFLTVLTE 156 (206)
Q Consensus 138 ~Sa~---~~~~-------v~~~~~~l~~~ 156 (206)
+|+. ++.| +.++++.+.+.
T Consensus 222 ~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 222 GSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred eccceeecCCCcccccchHHHHHHHHHHh
Confidence 8875 4444 44555554443
No 256
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.58 E-value=2.9e-14 Score=115.48 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=95.1
Q ss_pred CccCCCCCHHHHHHHHhcCC--CCC---------------------------CCccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDE--FSL---------------------------DSKATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|+.++|||||+.+|+... ... ......+.+.......+......+.|+|
T Consensus 12 i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i~lID 91 (446)
T PTZ00141 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYFTIID 91 (446)
T ss_pred EEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEEEEEE
Confidence 58999999999999998621 100 0001124555555555667778899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhh---H---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCc--CCCCC--
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQS---F---DNVARWLEELRGHADKNII-IMLVGNKSDLET--LRAVP-- 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~--~~~~~-- 120 (206)
|||+.+|.......+..+|++|+|+|++...- + ...++.+..+.. .++| +++++||+|... ..+..
T Consensus 92 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi~~iiv~vNKmD~~~~~~~~~~~~ 168 (446)
T PTZ00141 92 APGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGVKQMIVCINKMDDKTVNYSQERYD 168 (446)
T ss_pred CCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCCCeEEEEEEccccccchhhHHHHH
Confidence 99999998888888899999999999986520 1 122222222332 3566 679999999532 11111
Q ss_pred --HHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 040835 121 --TEDAKEFAEKEG-----LCFMETSALESTNVEL 148 (206)
Q Consensus 121 --~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 148 (206)
.+++..+....+ ++++.+|+.+|+|+.+
T Consensus 169 ~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 169 EIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 233444444433 5799999999999864
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.58 E-value=2.6e-14 Score=120.81 Aligned_cols=145 Identities=24% Similarity=0.190 Sum_probs=91.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc------------c-------------------ccceeeEEEEEEECCeEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK------------A-------------------TIGVEFQTKTLVIHHKNVKAQI 49 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~~~i 49 (206)
++|.+++|||||+++|+...-..... . .-+.++......+...+..+.+
T Consensus 29 iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~~~~l 108 (632)
T PRK05506 29 TCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKRKFIV 108 (632)
T ss_pred EECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCceEEE
Confidence 58999999999999999743221100 0 0123333333344455667899
Q ss_pred EeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH----HHHH
Q 040835 50 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT----EDAK 125 (206)
Q Consensus 50 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~ 125 (206)
+||||++.|.......+..+|++++|+|+.....-. ....+..+.... ..+++|++||+|+........ .++.
T Consensus 109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~i~~~i~ 185 (632)
T PRK05506 109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDEIVADYR 185 (632)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHHHHHHHHH
Confidence 999999988666666788999999999997643211 111111222221 257889999999863111111 2233
Q ss_pred HHHHHcC---CeEEEeccCCCCCHHH
Q 040835 126 EFAEKEG---LCFMETSALESTNVEL 148 (206)
Q Consensus 126 ~~~~~~~---~~~~~~Sa~~~~~v~~ 148 (206)
.+....+ ++++.+||+++.|+++
T Consensus 186 ~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 186 AFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHcCCCCccEEEEecccCCCccc
Confidence 3344544 4699999999999874
No 258
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=1.7e-14 Score=114.07 Aligned_cols=169 Identities=15% Similarity=0.141 Sum_probs=119.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh-----hhh----hhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-----YRA----VTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~----~~~~~~~~~d~ 71 (206)
|+|.|+||||||+|.+..........+. ++.....-.++.....++++||||.-. ... ......+---+
T Consensus 173 lcG~PNVGKSSf~~~vtradvevqpYaF--TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraa 250 (620)
T KOG1490|consen 173 VCGYPNVGKSSFNNKVTRADDEVQPYAF--TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSA 250 (620)
T ss_pred EecCCCCCcHhhcccccccccccCCccc--ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhh
Confidence 6899999999999999987776555444 233333334456677889999999421 111 11222333456
Q ss_pred EEEEeeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH---HHHHHHHcCCeEEEeccCCCCCH
Q 040835 72 AMLVYDITKRQ--SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED---AKEFAEKEGLCFMETSALESTNV 146 (206)
Q Consensus 72 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~v 146 (206)
|+|++|++... +......++..+..+. .+.|+|+|+||+|......++.+. +..+....+++++++|..+.+||
T Consensus 251 VLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegV 329 (620)
T KOG1490|consen 251 VLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGV 329 (620)
T ss_pred heeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhce
Confidence 88888988644 5566666777776655 689999999999997666665543 33444455689999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccCCCC
Q 040835 147 ELAFLTVLTEIYRIVSKKALTANDES 172 (206)
Q Consensus 147 ~~~~~~l~~~i~~~~~~~~~~~~~~~ 172 (206)
.++.....+.++.++-..++.++...
T Consensus 330 m~Vrt~ACe~LLa~RVE~Klks~~~~ 355 (620)
T KOG1490|consen 330 MDVRTTACEALLAARVEQKLKSESRV 355 (620)
T ss_pred eeHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999888877766654433
No 259
>PRK12740 elongation factor G; Reviewed
Probab=99.57 E-value=9.9e-14 Score=118.24 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=76.5
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCCC----------------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhH
Q 040835 2 IGDSAVGKSQLLARFARDEFSLDS----------------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAY 65 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 65 (206)
+|++++|||||+++|+...-.... ....+.++......+.+.+..+.+|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999653211000 0012334444444455567889999999999888888888
Q ss_pred hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 66 YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 66 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
+..+|++++|+|+++.........| ..+.. .++|+++++||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999886554433333 22222 468999999999974
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.56 E-value=9.9e-14 Score=118.29 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=77.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-----CC-----------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-----DS-----------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|.+++|||||+++|+...-.. .. ....+++.......+.+.+..+.+|||||+..|...+..
T Consensus 13 iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~ 92 (691)
T PRK12739 13 IMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVER 92 (691)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHH
Confidence 58999999999999997521100 00 011234444444555556788999999999888888888
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
.++.+|++|+|+|+.+....... ..+..+.. .++|+++++||+|+.
T Consensus 93 al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 93 SLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence 99999999999999876433222 22222332 468999999999985
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=9.4e-14 Score=109.38 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHhcCCC---------------CCCCccccceeeEEEEEEE-----CCeEEEEEEEeCCCchhhhhhhHh
Q 040835 5 SAVGKSQLLARFARDEF---------------SLDSKATIGVEFQTKTLVI-----HHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 5 ~~~GKTtLl~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
-.=|||||..+|+...- ..+... |.++....+.+ ++..+.++++||||+-.|.-....
T Consensus 18 IDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERER--GITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSR 95 (603)
T COG0481 18 IDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERER--GITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSR 95 (603)
T ss_pred ecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhc--CceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehh
Confidence 34699999999986311 111222 33443333322 456799999999999998877778
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH-HHHHHHcCCe---EEEecc
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA-KEFAEKEGLC---FMETSA 140 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~~---~~~~Sa 140 (206)
.+..|.++++|+|++..-....+.+.+..+.. +.-++-|+||+|+.. .+.+.. .++..-.|++ .+.+||
T Consensus 96 SLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~---Adpervk~eIe~~iGid~~dav~~SA 168 (603)
T COG0481 96 SLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPA---ADPERVKQEIEDIIGIDASDAVLVSA 168 (603)
T ss_pred hHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCC---CCHHHHHHHHHHHhCCCcchheeEec
Confidence 88899999999999987666666666666553 577899999999963 223333 3333445664 788999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 040835 141 LESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 141 ~~~~~v~~~~~~l~~~i~~ 159 (206)
++|.||+++++.+++.+..
T Consensus 169 KtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 169 KTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred ccCCCHHHHHHHHHhhCCC
Confidence 9999999999999987643
No 262
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.56 E-value=8e-15 Score=103.85 Aligned_cols=110 Identities=24% Similarity=0.375 Sum_probs=67.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHh---HhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYRAVTSA---YYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~~i~v~ 76 (206)
++|+.|+|||+|+.+|..+...+..... ..+. ...+ ......+.++|+||+.+.+..... +...+.++|||+
T Consensus 8 L~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvv 83 (181)
T PF09439_consen 8 LVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVV 83 (181)
T ss_dssp EE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEE
Confidence 5899999999999999998554333222 1111 1111 224567899999999887664444 478899999999
Q ss_pred eCCC-hhhHHHHHHHH-HHHHhc--CCCCCcEEEEEeCCCCC
Q 040835 77 DITK-RQSFDNVARWL-EELRGH--ADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 77 d~~~-~~s~~~~~~~~-~~~~~~--~~~~~p~ivv~nK~D~~ 114 (206)
|.+. ...+..+.+++ ..+... ....+|++|+.||.|+.
T Consensus 84 DSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 84 DSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp ETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred eCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 9974 33455544433 333221 24679999999999985
No 263
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.55 E-value=3.8e-13 Score=117.15 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=96.0
Q ss_pred CCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE-----------E-----EEEEEeCCCchhhhhhhHhHhcCCc
Q 040835 7 VGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN-----------V-----KAQIWDTAGQERYRAVTSAYYRGAV 70 (206)
Q Consensus 7 ~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~i~D~~G~~~~~~~~~~~~~~~d 70 (206)
++||||+.+|.+..+.......++-.+....+..+... . .+.+|||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 67999999999988865544443444444444433110 1 2799999999999888888889999
Q ss_pred EEEEEeeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC----------------HHHHH----HH
Q 040835 71 GAMLVYDITK---RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP----------------TEDAK----EF 127 (206)
Q Consensus 71 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~ 127 (206)
++++|+|+++ +.+++.+. .+.. .++|+++++||+|+....... .++.. .+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 33333332 2222 368999999999985322110 01110 01
Q ss_pred ---HHH-------------c--CCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 128 ---AEK-------------E--GLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 128 ---~~~-------------~--~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..+ + .++++++||++|+|+++++.++....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 011 1 35799999999999999998776543
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.55 E-value=1.1e-13 Score=114.02 Aligned_cols=110 Identities=17% Similarity=0.244 Sum_probs=77.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC--------------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD--------------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 60 (206)
|+|.+++|||||+++|+...-... .....+.++......+++.+..+.+|||||+..|..
T Consensus 16 iiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~ 95 (527)
T TIGR00503 16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSE 95 (527)
T ss_pred EEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHH
Confidence 589999999999999864211000 001124445555566667788999999999998887
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
.....++.+|++|+|+|+++... .....++..... .++|+++++||+|+.
T Consensus 96 ~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 96 DTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred HHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 77778899999999999987421 122333333322 468999999999985
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.54 E-value=6.9e-13 Score=108.99 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=72.5
Q ss_pred EEEEEeCCCchh-----hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC
Q 040835 46 KAQIWDTAGQER-----YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP 120 (206)
Q Consensus 46 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 120 (206)
.+.++||||... ........+..+|+++||+|.+...+..+ ...+..+.... .+.|+++|+||+|+.......
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 467899999643 23334457899999999999987433222 22333343322 236999999999985433323
Q ss_pred HHHHHHHHHH----cC---CeEEEeccCCCCCHHHHHHHHHH
Q 040835 121 TEDAKEFAEK----EG---LCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 121 ~~~~~~~~~~----~~---~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
.+.+..+... .+ ..+|.+||+.+.|++++++.+..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 4555555332 22 25999999999999999998887
No 266
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.54 E-value=1e-13 Score=112.15 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=74.8
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 122 (206)
..+.++|+||++.|.......+..+|++++|+|+.+........+.+..+.... -.++++++||+|+...... ..+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~~~~~~ 194 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQAQDQYE 194 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHHHHHHH
Confidence 368899999999988777777889999999999987421112222222222221 2468999999998632211 122
Q ss_pred HHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 123 DAKEFAEK---EGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 123 ~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++..+... .+.+++.+||+++.|++.+++.|.+.+
T Consensus 195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 33333332 257899999999999998888887644
No 267
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=1.4e-13 Score=117.49 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=79.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-----CCc-----------cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-----DSK-----------ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|.+++|||||+++|+...-.. ... ...+++.......+.+.+..+.+|||||+..+...+..
T Consensus 15 iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~ 94 (689)
T TIGR00484 15 ISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVER 94 (689)
T ss_pred EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHH
Confidence 58999999999999997421111 000 01244555555555566788999999999888878888
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
.++.+|++|+|+|+.+.........| ..+.. .++|+++++||+|+..
T Consensus 95 ~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 95 SLRVLDGAVAVLDAVGGVQPQSETVW-RQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred HHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 99999999999999876544332222 22332 4689999999999864
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=5.8e-13 Score=113.62 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=76.4
Q ss_pred CccCCCCCHHHHHHHHhcC--CC-CC--CC-----------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARD--EF-SL--DS-----------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~-~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|.+++|||||+++|+.. .. .. .. ....++++......+.+.+..+.++||||+..|......
T Consensus 15 iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~ 94 (693)
T PRK00007 15 IMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVER 94 (693)
T ss_pred EECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHH
Confidence 5899999999999999741 11 00 00 012244555555555566788999999999888777777
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
.++.+|++|+|+|+...........| ..+.. .++|.++++||+|+.
T Consensus 95 al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~---~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 95 SLRVLDGAVAVFDAVGGVEPQSETVW-RQADK---YKVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHcCEEEEEEECCCCcchhhHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 88999999999998866433332222 22333 468899999999974
No 269
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.51 E-value=9.7e-13 Score=104.88 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=51.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccc--eeeEEEEEE-------------------EC-CeEEEEEEEeCCCc---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIG--VEFQTKTLV-------------------IH-HKNVKAQIWDTAGQ--- 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~--~~~~~~~~~-------------------~~-~~~~~~~i~D~~G~--- 55 (206)
++|.||||||||+|+|++..+.....+..+ .+.....+. .+ .....+.+||+||.
T Consensus 6 ivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~g 85 (396)
T PRK09602 6 LVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPG 85 (396)
T ss_pred EECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCC
Confidence 589999999999999998876542222211 111111110 11 23467899999994
Q ss_pred -hhhhhhhHhH---hcCCcEEEEEeeCC
Q 040835 56 -ERYRAVTSAY---YRGAVGAMLVYDIT 79 (206)
Q Consensus 56 -~~~~~~~~~~---~~~~d~~i~v~d~~ 79 (206)
+....+...+ ++.+|++++|+|..
T Consensus 86 a~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 86 AHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred ccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 2233344444 88999999999996
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.46 E-value=3.3e-13 Score=87.90 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=92.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc----hhhhhhhHhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ----ERYRAVTSAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i~v~ 76 (206)
++|..|+|||||.++|.+...... .|... .+... ..+||||. ..+.........++|++++|-
T Consensus 6 ~vG~~gcGKTtL~q~L~G~~~lyk--KTQAv-------e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~ 72 (148)
T COG4917 6 FVGQVGCGKTTLFQSLYGNDTLYK--KTQAV-------EFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVH 72 (148)
T ss_pred EecccccCchhHHHHhhcchhhhc--cccee-------eccCc----cccCCchhhhhhhHHHHHHHHHhhccceeeeee
Confidence 589999999999999998766332 22111 11111 25699993 344444556678999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHHHH
Q 040835 77 DITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 77 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
.++++++.-. ..+... -..|+|-+++|.|+.. ..+.+..+.+..+.|. ++|++|+.++.|+++++..|..
T Consensus 73 ~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLae--d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 73 AANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAE--DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cccCccccCC-----cccccc--cccceEEEEecccccc--hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 9998864211 111111 2456899999999975 2344567788888886 5999999999999999988753
No 271
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=4.8e-13 Score=104.03 Aligned_cols=148 Identities=20% Similarity=0.220 Sum_probs=97.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-----------------C------------CccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-----------------D------------SKATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-----------------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
|+|+..+|||||+-+|+...-.. . ...--|.++......+....+.+.|+|
T Consensus 12 ~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~~tIiD 91 (428)
T COG5256 12 FIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYNFTIID 91 (428)
T ss_pred EEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCceEEEee
Confidence 58999999999999998631100 0 011135566666666666677899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChh---hH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH---
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQ---SF--DNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED--- 123 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--- 123 (206)
+||++.|-.....-..+||++|+|+|..+.+ .| ....+.+..+.+..+ -..++|++||+|...-++-..++
T Consensus 92 aPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde~rf~ei~~ 170 (428)
T COG5256 92 APGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDEERFEEIVS 170 (428)
T ss_pred CCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCHHHHHHHHH
Confidence 9999999888888889999999999998763 11 111122222222222 24588999999986522222222
Q ss_pred -HHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 040835 124 -AKEFAEKEG-----LCFMETSALESTNVELA 149 (206)
Q Consensus 124 -~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 149 (206)
+..+.+..| ++|+.+|+..|.|+.+.
T Consensus 171 ~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 171 EVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 233444444 46999999999997653
No 272
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=5e-13 Score=100.34 Aligned_cols=96 Identities=19% Similarity=0.192 Sum_probs=77.8
Q ss_pred hhhhhhhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040835 56 ERYRAVTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC 134 (206)
Q Consensus 56 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 134 (206)
+++..+.+.++.++|.+++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+...+....+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567777888999999999999999887 89999999876654 4799999999999965444333334433 457899
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 040835 135 FMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 135 ~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
++++||+++.|++++|..+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988753
No 273
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.41 E-value=1.1e-11 Score=93.65 Aligned_cols=156 Identities=18% Similarity=0.345 Sum_probs=110.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe--EEEEEEEeCCCchhhhhhhHhHhcCC----cEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK--NVKAQIWDTAGQERYRAVTSAYYRGA----VGAML 74 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~----d~~i~ 74 (206)
|+|..|+|||||+.+|-+..- ..+..+..+-...+.-+.+ -..+.+|-..|.-.+..+....+... -+||+
T Consensus 57 vlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvil 133 (473)
T KOG3905|consen 57 VLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVIL 133 (473)
T ss_pred EEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEE
Confidence 589999999999999988652 3333345554444433222 24577898888777666665555433 36888
Q ss_pred EeeCCChhh-HHHHHHHHHHHHhc--------------------------------------------------------
Q 040835 75 VYDITKRQS-FDNVARWLEELRGH-------------------------------------------------------- 97 (206)
Q Consensus 75 v~d~~~~~s-~~~~~~~~~~~~~~-------------------------------------------------------- 97 (206)
+.|++++.. ++.+..|...+.+.
T Consensus 134 tasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~ 213 (473)
T KOG3905|consen 134 TASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLG 213 (473)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccC
Confidence 999999854 46667777655433
Q ss_pred -----CCCCCcEEEEEeCCCCC----cCCCCC-------HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 98 -----ADKNIIIMLVGNKSDLE----TLRAVP-------TEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 98 -----~~~~~p~ivv~nK~D~~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
.+.++|++||.+|+|.. .+.+.. ...++.||-.+|..+|.+|++...|++-+..+|+++++-
T Consensus 214 ~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 214 QDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 23568999999999972 222221 133688888999999999999999999999999988753
No 274
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.41 E-value=3.7e-13 Score=100.37 Aligned_cols=111 Identities=18% Similarity=0.113 Sum_probs=58.8
Q ss_pred EEEEEeCCCchhhhhhhHhHh--------cCCcEEEEEeeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040835 46 KAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNKSDLETL 116 (206)
Q Consensus 46 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 116 (206)
.+.|+|||||.++...+.... ...-++++++|..-..+ ...+..++..+.-....+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999988766554433 34557888888763322 223333333333222357999999999998641
Q ss_pred CCCC--------------------HHHHHHHHHH---cC-C-eEEEeccCCCCCHHHHHHHHHHHH
Q 040835 117 RAVP--------------------TEDAKEFAEK---EG-L-CFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 117 ~~~~--------------------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
. .. ....++++.- .+ . .++.+|+.+++++.+++..+-+.+
T Consensus 172 ~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 Y-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp H-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred h-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 00 0001111221 22 3 699999999999999988876543
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.39 E-value=1.4e-12 Score=111.70 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=74.0
Q ss_pred CccCCCCCHHHHHHHHhcC---------------CCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARD---------------EFSLD---SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
|+|+.++|||||+++|+.. .+.+. ...|+...........++.++.+.+|||||+..|....
T Consensus 24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~ 103 (720)
T TIGR00490 24 IVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDV 103 (720)
T ss_pred EEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHH
Confidence 5899999999999999752 11111 01111111111222356778899999999999888888
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
...++.+|++|+|+|+.+.........|.. .. ..+.|.++++||+|..
T Consensus 104 ~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 104 TRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL---KENVKPVLFINKVDRL 151 (720)
T ss_pred HHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH---HcCCCEEEEEEChhcc
Confidence 889999999999999987432222222221 22 2357888999999974
No 276
>PRK13768 GTPase; Provisional
Probab=99.39 E-value=2.4e-12 Score=97.17 Aligned_cols=109 Identities=17% Similarity=0.135 Sum_probs=68.9
Q ss_pred EEEEEeCCCchhh---hhhhHhHhc---C--CcEEEEEeeCCChhhHHHH-H-HHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 46 KAQIWDTAGQERY---RAVTSAYYR---G--AVGAMLVYDITKRQSFDNV-A-RWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 46 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~-~-~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
.+.+||+||+.+. ...+..+++ . .+++++++|.......... . .|+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5899999997653 333333322 2 8999999999654432222 1 222211111 24799999999999864
Q ss_pred CCCCCHHHHH----------------------------HHHHHcC--CeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 116 LRAVPTEDAK----------------------------EFAEKEG--LCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 116 ~~~~~~~~~~----------------------------~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..+. +... +..+..+ .+++++|+++++|++++++++.+.+
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 3221 1111 1122334 5789999999999999999998765
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.38 E-value=5.1e-12 Score=96.41 Aligned_cols=144 Identities=25% Similarity=0.212 Sum_probs=99.3
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCC-------------------------------CccccceeeEEEEEEECCeEEEEEEE
Q 040835 2 IGDSAVGKSQLLARFARDEFSLD-------------------------------SKATIGVEFQTKTLVIHHKNVKAQIW 50 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 50 (206)
+|.-.=|||||+-+|+...-... ...-.|+++....-.+.....+|.|-
T Consensus 12 cGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiA 91 (431)
T COG2895 12 CGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIA 91 (431)
T ss_pred eccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEe
Confidence 68888899999999997411000 01114566666555566677889999
Q ss_pred eCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH----HHH
Q 040835 51 DTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED----AKE 126 (206)
Q Consensus 51 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~ 126 (206)
||||++.|....-.-..-||++|+++|+... +-...+.+..+..+.+ -..+++.+||+|+.+..+-..++ -..
T Consensus 92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F~~I~~dy~~ 168 (431)
T COG2895 92 DTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVFEAIVADYLA 168 (431)
T ss_pred cCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHHHHHHHHHHH
Confidence 9999999987666667789999999999532 3333334444444432 25689999999997644433333 345
Q ss_pred HHHHcCC---eEEEeccCCCCCHHH
Q 040835 127 FAEKEGL---CFMETSALESTNVEL 148 (206)
Q Consensus 127 ~~~~~~~---~~~~~Sa~~~~~v~~ 148 (206)
++.++++ .++++||+.|.||..
T Consensus 169 fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 169 FAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHcCCCcceEEechhccCCcccc
Confidence 6677765 489999999998753
No 278
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.37 E-value=1e-11 Score=93.22 Aligned_cols=113 Identities=13% Similarity=0.107 Sum_probs=64.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh--h--------hhHhHhc--C
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR--A--------VTSAYYR--G 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~--------~~~~~~~--~ 68 (206)
|+|.+|||||||+|+|++.......... +.+..............+.+|||||..... . ....++. .
T Consensus 36 lvG~tGvGKSSliNaLlg~~~~~v~~~~-~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~ 114 (249)
T cd01853 36 VLGKTGVGKSSTINSIFGERKAATSAFQ-SETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKT 114 (249)
T ss_pred EECCCCCcHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccC
Confidence 6899999999999999998764332211 112222222222334678999999965331 0 0122332 5
Q ss_pred CcEEEEEeeCCChh-hHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCc
Q 040835 69 AVGAMLVYDITKRQ-SFDNVARWLEELRGHAD--KNIIIMLVGNKSDLET 115 (206)
Q Consensus 69 ~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 115 (206)
.|++++|..++... ... ....+..+....+ .-.++++|.||+|...
T Consensus 115 idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 115 PDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 78888887665422 111 1223333333222 1256999999999853
No 279
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.36 E-value=1.5e-11 Score=89.59 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 124 (206)
..+.++++.|.......... .+|.+|.|+|+.+.+.... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 45667888884222222221 2677999999987655321 111111 122389999999974223334444
Q ss_pred HHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 125 KEFAEK--EGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 125 ~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
.+..+. .+.++|++|+++|+|++++|+++.+++
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445444 367899999999999999999998664
No 280
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.36 E-value=3.4e-11 Score=97.51 Aligned_cols=157 Identities=24% Similarity=0.387 Sum_probs=108.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC--eEEEEEEEeCCCchhhhhhhHhHhcCC----cEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH--KNVKAQIWDTAGQERYRAVTSAYYRGA----VGAML 74 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~----d~~i~ 74 (206)
|+|..++|||||+.+|.+.. ...++.+..+....+.-+. ....+.+|-..|...+..+....+... -++|+
T Consensus 30 vlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvI 106 (472)
T PF05783_consen 30 VLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVI 106 (472)
T ss_pred EEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEE
Confidence 68999999999999987643 3445556666555543322 234689999988766776665555432 36888
Q ss_pred EeeCCChhhH-HHHHHHHHHHHhc--------------------------------------------------------
Q 040835 75 VYDITKRQSF-DNVARWLEELRGH-------------------------------------------------------- 97 (206)
Q Consensus 75 v~d~~~~~s~-~~~~~~~~~~~~~-------------------------------------------------------- 97 (206)
|+|.+.+..+ +.+..|+..++.+
T Consensus 107 vlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl 186 (472)
T PF05783_consen 107 VLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPL 186 (472)
T ss_pred EecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCC
Confidence 9999997654 4455555443322
Q ss_pred ------CCCCCcEEEEEeCCCCC----cCCCC-------CHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 98 ------ADKNIIIMLVGNKSDLE----TLRAV-------PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 98 ------~~~~~p~ivv~nK~D~~----~~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.+.++|++||.+|+|.. .+... ..+-++.++-.+|+.+|.||++...+++-+...|.+.++..
T Consensus 187 ~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 187 GEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred CCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 01248999999999962 21111 12347888889999999999999999999898988877654
No 281
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=6e-12 Score=103.85 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=107.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------------CeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH----------------HKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|.-.+|||-|+..+.+..+.......++-.+....+... ..---+.++||||++.|..++..
T Consensus 480 ilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsr 559 (1064)
T KOG1144|consen 480 ILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSR 559 (1064)
T ss_pred EeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhc
Confidence 58999999999999999987765544433333322222221 01112688999999999999999
Q ss_pred HhcCCcEEEEEeeCCCh---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----CH----------------
Q 040835 65 YYRGAVGAMLVYDITKR---QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV----PT---------------- 121 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~---------------- 121 (206)
....||++|+|+|+..+ .+++.+ .-+...+.|+||.+||+|..-.+.. ..
T Consensus 560 gsslC~~aIlvvdImhGlepqtiESi-------~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~ 632 (1064)
T KOG1144|consen 560 GSSLCDLAILVVDIMHGLEPQTIESI-------NLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK 632 (1064)
T ss_pred cccccceEEEEeehhccCCcchhHHH-------HHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence 99999999999999864 233222 2222357999999999996321100 00
Q ss_pred ----HHHHHHHHH-cC-------------CeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhhc
Q 040835 122 ----EDAKEFAEK-EG-------------LCFMETSALESTNVELAFLTVLTEIYRIVSKKAL 166 (206)
Q Consensus 122 ----~~~~~~~~~-~~-------------~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~~~~~ 166 (206)
..+-+|+.+ ++ +.+++|||.+|+||.+++.+|++.....+..+..
T Consensus 633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~ 695 (1064)
T KOG1144|consen 633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA 695 (1064)
T ss_pred HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 001122221 01 2478899999999999999999998888776654
No 282
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.36 E-value=1.2e-11 Score=96.06 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=68.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PT 121 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 121 (206)
.+.+.|+||+|...-.. .....+|.++++.++...+.+..++. .+.. ..-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHH
Confidence 46789999999763322 25677999999987655544443332 1111 223899999998642211 11
Q ss_pred HHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 122 EDAKEFAEK-------EGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 122 ~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.++...... +..+++.+|++++.|++++++.+.+++...
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 222222221 235799999999999999999999876543
No 283
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.36 E-value=1.6e-11 Score=93.73 Aligned_cols=118 Identities=11% Similarity=0.074 Sum_probs=65.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh-------hHhHh--cCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK-ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV-------TSAYY--RGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~--~~~d 70 (206)
|+|.+|+|||||+|+|++........ .+.+.+........ .+..+.+|||||....... ...++ ...|
T Consensus 43 lvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~D 120 (313)
T TIGR00991 43 VMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTID 120 (313)
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCC
Confidence 58999999999999999976533221 11122222222222 3577999999996543211 11112 2689
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCC
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVP 120 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~ 120 (206)
+++||..++...........+..+....+ .-.+++|++|+.|...+...+
T Consensus 121 vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 121 VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 99999665432111111223333332221 235689999999976433333
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.36 E-value=2.2e-11 Score=96.39 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=51.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCCchh-------h
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQER-------Y 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-------~ 58 (206)
++|.||||||||+|+|.+........|..+.......+.+... ...+.++|+||... .
T Consensus 26 IVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL 105 (390)
T PTZ00258 26 IVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL 105 (390)
T ss_pred EECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence 5899999999999999887764443343232222223333221 23489999999532 1
Q ss_pred hhhhHhHhcCCcEEEEEeeCC
Q 040835 59 RAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 59 ~~~~~~~~~~~d~~i~v~d~~ 79 (206)
.......++.+|++++|+|..
T Consensus 106 g~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 106 GNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHHHHHCCEEEEEEeCC
Confidence 112234567899999999973
No 285
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.35 E-value=1e-11 Score=91.54 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=84.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEEECCeEEEEEEEeCCCchhh-------hhhh----HhHhc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA--TIGVEFQTKTLVIHHKNVKAQIWDTAGQERY-------RAVT----SAYYR 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~----~~~~~ 67 (206)
|+|.+|+||||++|.+++......... .............++ ..+.++||||.... .... ....+
T Consensus 5 llG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~ 82 (212)
T PF04548_consen 5 LLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSP 82 (212)
T ss_dssp EECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccC
Confidence 589999999999999999877544321 112233333334444 66899999993211 1111 12245
Q ss_pred CCcEEEEEeeCCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-------HHHHHHHHHHcCCeEEEe
Q 040835 68 GAVGAMLVYDITKRQSFDN--VARWLEELRGHADKNIIIMLVGNKSDLETLRAVP-------TEDAKEFAEKEGLCFMET 138 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 138 (206)
+.+++|+|+... +-+... .-.++..+.... .-..++|+.|..|...+..+. ...+..+.+..+-.++..
T Consensus 83 g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f 160 (212)
T PF04548_consen 83 GPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVF 160 (212)
T ss_dssp -ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred CCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEE
Confidence 789999999988 322211 122222222111 224588888888865433311 123556667777778877
Q ss_pred ccC------CCCCHHHHHHHHHHHHHHH
Q 040835 139 SAL------ESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 139 Sa~------~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+ +...+.+++..+-+++.+.
T Consensus 161 ~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 161 NNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 766 2234566666655555544
No 286
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.33 E-value=9.7e-12 Score=91.32 Aligned_cols=56 Identities=18% Similarity=0.044 Sum_probs=41.6
Q ss_pred CCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 101 NIIIMLVGNKSDLETLRAVPTEDAKEFAEKE--GLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 101 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
..|.++++||+|+.........+.....++. ..+++++|++++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999643222333444444444 3789999999999999999999874
No 287
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.3e-11 Score=85.91 Aligned_cols=109 Identities=19% Similarity=0.263 Sum_probs=74.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhc---CCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYR---GAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i~v~d 77 (206)
++|+.++|||+|+-.|..+.+....... .............++++|.||+.+.+.-..++++ .+-+++||+|
T Consensus 43 l~Gl~dSGKT~LF~qL~~gs~~~TvtSi-----epn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVD 117 (238)
T KOG0090|consen 43 LVGLSDSGKTSLFTQLITGSHRGTVTSI-----EPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVD 117 (238)
T ss_pred EEecCCCCceeeeeehhcCCccCeeeee-----ccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEe
Confidence 5799999999999999887554333221 1122222222334899999999998887777777 7999999999
Q ss_pred CCC-hhhHHHHHH-HHHHHHhc--CCCCCcEEEEEeCCCCC
Q 040835 78 ITK-RQSFDNVAR-WLEELRGH--ADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 78 ~~~-~~s~~~~~~-~~~~~~~~--~~~~~p~ivv~nK~D~~ 114 (206)
..- .....++.+ +++.+... +...+|++++-||.|+.
T Consensus 118 Sa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 118 SATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred ccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 753 223444444 33444333 34678999999999984
No 288
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.31 E-value=2.9e-11 Score=81.28 Aligned_cols=110 Identities=32% Similarity=0.346 Sum_probs=77.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc-cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK-ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|++.+
T Consensus 5 ~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 5 GIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred EECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEEEEcc
Confidence 58999999999999998777754443 3322 2223345667889999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVE 147 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 147 (206)
+..+++.+ |...+....+...|.++++||.|+.....+..++.. .++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 99888655 776666554566889999999998433333333333 34567889998874
No 289
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.29 E-value=1.9e-10 Score=90.17 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=50.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCCchh-------h
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQER-------Y 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-------~ 58 (206)
++|.||||||||+|+|++........|..+.......+.+... ...+.++|+||... .
T Consensus 7 IVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl 86 (364)
T PRK09601 7 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL 86 (364)
T ss_pred EECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHH
Confidence 5899999999999999998754333333222222223333221 13589999999532 1
Q ss_pred hhhhHhHhcCCcEEEEEeeCC
Q 040835 59 RAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 59 ~~~~~~~~~~~d~~i~v~d~~ 79 (206)
.......++.+|++++|+|..
T Consensus 87 g~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 87 GNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHhCCEEEEEEeCC
Confidence 112233467899999999974
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.28 E-value=7.4e-11 Score=95.30 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=108.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+.++|||.|++.|+++.+......+....+....+...+....+.+-|.+-. ....+...- ..+|+++++||.++
T Consensus 430 V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~ 507 (625)
T KOG1707|consen 430 VVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSN 507 (625)
T ss_pred EEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCC
Confidence 5899999999999999999888766555555555555555566666777777643 222222222 67999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+.++......+...... ...|+++|++|+|+....+ ...+. .+++.+++++ .+..|....-. .++|..|..+..
T Consensus 508 p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 508 PRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred chHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhh
Confidence 99998887766554433 6799999999999965443 23333 8899999885 45556664333 788888887654
Q ss_pred H
Q 040835 159 R 159 (206)
Q Consensus 159 ~ 159 (206)
-
T Consensus 584 ~ 584 (625)
T KOG1707|consen 584 Y 584 (625)
T ss_pred C
Confidence 3
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.27 E-value=5.1e-11 Score=102.43 Aligned_cols=110 Identities=16% Similarity=0.166 Sum_probs=72.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc-----------c---ccceeeEEEEE----EECCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK-----------A---TIGVEFQTKTL----VIHHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~-----------~---~~~~~~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
|+|+.++|||||+++|+...-..... + --++++....+ ..++.+..+.++||||+..|....
T Consensus 25 iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~ 104 (731)
T PRK07560 25 IIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDV 104 (731)
T ss_pred EEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHH
Confidence 58999999999999998632111100 0 00122222211 123346788999999999988888
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
...++.+|++|+|+|+...........|.. ... .+.|.++++||+|..
T Consensus 105 ~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 105 TRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH---cCCCeEEEEECchhh
Confidence 888999999999999987543322233332 222 246789999999974
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.27 E-value=2.1e-11 Score=105.90 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=72.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc--------------cccceeeEEEEEEECC----------eEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK--------------ATIGVEFQTKTLVIHH----------KNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~ 56 (206)
|+|+.++|||||+++|+...-..... .--+.++....+.+.+ ....+.++||||+.
T Consensus 24 iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~ 103 (836)
T PTZ00416 24 VIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHV 103 (836)
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHH
Confidence 58999999999999998632111000 0011222211112222 25678999999999
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
.|.......++.+|++|+|+|+.+.-......-| ..+.. .++|+++++||+|+.
T Consensus 104 ~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 104 DFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred hHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence 9888888889999999999999875433322223 22222 358999999999985
No 293
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.26 E-value=3.7e-11 Score=104.55 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=74.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------cc---ccceeeEEEEEEECC----------------eEEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------KA---TIGVEFQTKTLVIHH----------------KNVKAQIW 50 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~----------------~~~~~~i~ 50 (206)
|+|+.++|||||+++|+...-.... .+ ..+.++....+.+.+ .+..+.++
T Consensus 24 iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inli 103 (843)
T PLN00116 24 VIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLI 103 (843)
T ss_pred EEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEE
Confidence 5899999999999999864311000 00 012222222222211 25678999
Q ss_pred eCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 51 DTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 51 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
||||+.+|.......++.+|++|+|+|+.++-.......|... . ..++|+++++||+|..
T Consensus 104 DtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~-~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQA-L---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHH-H---HCCCCEEEEEECCccc
Confidence 9999999988888889999999999999876443333333332 2 2468999999999985
No 294
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.26 E-value=7e-11 Score=93.27 Aligned_cols=150 Identities=16% Similarity=0.180 Sum_probs=102.7
Q ss_pred CCCCHHHHHHHHhcCCC--CCC------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCc
Q 040835 5 SAVGKSQLLARFARDEF--SLD------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAV 70 (206)
Q Consensus 5 ~~~GKTtLl~~l~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 70 (206)
-.=|||||+..|+.+.- ... ...--|+++-.+...+.+.+..+.|+||||+..|.......+.-+|
T Consensus 14 VDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVD 93 (603)
T COG1217 14 VDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVD 93 (603)
T ss_pred ecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcc
Confidence 34699999999997421 111 1122467787788788888899999999999999998999999999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHHHHH-------cCCeEEEeccCC
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAKEFAEK-------EGLCFMETSALE 142 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~~~~~~Sa~~ 142 (206)
.+++++|+.+.. ....+..+.... ..+.+.|||+||+|....+. .-.++...+.-. ++.|++..|++.
T Consensus 94 gvlLlVDA~EGp-MPQTrFVlkKAl---~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~ 169 (603)
T COG1217 94 GVLLLVDASEGP-MPQTRFVLKKAL---ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARN 169 (603)
T ss_pred eEEEEEEcccCC-CCchhhhHHHHH---HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccC
Confidence 999999998753 122233222222 24677789999999854222 122344445444 346888888877
Q ss_pred CC----------CHHHHHHHHHHHHH
Q 040835 143 ST----------NVELAFLTVLTEIY 158 (206)
Q Consensus 143 ~~----------~v~~~~~~l~~~i~ 158 (206)
|. ++.-+|+.|++++.
T Consensus 170 G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 170 GTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred ceeccCccccccchhHHHHHHHHhCC
Confidence 64 46667776666553
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.26 E-value=1.5e-10 Score=86.07 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=77.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|+|||||++.|.+...........+ ++ .+ .......+.++||||.. . ......+.+|++++++|.+.
T Consensus 44 ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~-~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 44 VVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--N-AMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred EECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--H-HHHHHHHhcCEEEEEEecCc
Confidence 589999999999999987522111111111 11 11 11245678999999864 2 22345688999999999976
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCcCCCCC---HHHHHH-HHHH--cCCeEEEeccCCCC
Q 040835 81 RQSFDNVARWLEELRGHADKNIII-MLVGNKSDLETLRAVP---TEDAKE-FAEK--EGLCFMETSALEST 144 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~~ 144 (206)
...... ..++..+.. .+.|. ++|+||+|+....... ..++.. +..+ .+.+++.+||+++-
T Consensus 116 ~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 116 GFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred CCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 443222 223333332 35674 4599999985322111 111222 2222 24689999999873
No 296
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.25 E-value=1.3e-10 Score=82.42 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=44.3
Q ss_pred EEEEeCCCchh----hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 47 AQIWDTAGQER----YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 47 ~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
+.|+||||... ....+..+++.+|++|+|.+++...+-.....+....... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 78999999643 3466788889999999999999865545555555554443 34488888884
No 297
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.24 E-value=3.2e-11 Score=85.23 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=56.7
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHH
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRG-HADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE--GLCFMETSALESTNVE 147 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~ 147 (206)
.-|+|+|++..+... ++ ......-=++|+||.|+.+....+.+.+.+.+++. +.+++++|.++|+|++
T Consensus 120 ~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 120 LRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred eEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 678888888654211 00 00001124789999999877777788888888876 4789999999999999
Q ss_pred HHHHHHHHHH
Q 040835 148 LAFLTVLTEI 157 (206)
Q Consensus 148 ~~~~~l~~~i 157 (206)
+++.++....
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9998887543
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.24 E-value=2.4e-10 Score=89.88 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc--------------cccc---eeeEEE-------EEEE-CCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK--------------ATIG---VEFQTK-------TLVI-HHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~--------------~~~~---~~~~~~-------~~~~-~~~~~~~~i~D~~G~ 55 (206)
|+|+.++|||||+++|.+..+.|... ...| +|...+ .+.. ++...++.++||+|.
T Consensus 22 vvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~ 101 (492)
T TIGR02836 22 VVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGY 101 (492)
T ss_pred EEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCc
Confidence 68999999999999999982222111 1112 222222 2222 345578899999983
Q ss_pred hh--------hhh---------------------hhHhHhc-CCcEEEEEe-eCC----ChhhH-HHHHHHHHHHHhcCC
Q 040835 56 ER--------YRA---------------------VTSAYYR-GAVGAMLVY-DIT----KRQSF-DNVARWLEELRGHAD 99 (206)
Q Consensus 56 ~~--------~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~~~~~~~~ 99 (206)
.. ... -++..+. .+|+.|+|. |.+ .++.+ +.-.+++..+..
T Consensus 102 ~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~--- 178 (492)
T TIGR02836 102 TVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE--- 178 (492)
T ss_pred ccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh---
Confidence 21 010 0344555 899988888 653 11223 333556666665
Q ss_pred CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 040835 100 KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALE 142 (206)
Q Consensus 100 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 142 (206)
.++|+++++|+.|-.... ..+....+..+++++++.+|+..
T Consensus 179 ~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 179 LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence 579999999999942211 33344566677888877776543
No 299
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.24 E-value=1.1e-10 Score=86.40 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=70.5
Q ss_pred EEEEEEeCCCchhh------hhhhHhHh--cCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 45 VKAQIWDTAGQERY------RAVTSAYY--RGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 45 ~~~~i~D~~G~~~~------~~~~~~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
..+.++||||+.+. ...+...+ ...-+++|++|..... ....+..++-....+....+|++++.||+|+..
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 45789999997542 11222222 2345677788764322 223344554444444557899999999999853
Q ss_pred CCCC-----CHHHHHHHHH-------------------H--cCCeEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 116 LRAV-----PTEDAKEFAE-------------------K--EGLCFMETSALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 116 ~~~~-----~~~~~~~~~~-------------------~--~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
..-. +.+...+... + .++..+-+|+.+|.|.+++|..+.+.+.+...
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 1100 0111111111 0 14578889999999999999999888766533
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.22 E-value=2.6e-10 Score=86.57 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=50.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCCchhh----hhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQERY----RAV 61 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~----~~~ 61 (206)
++|.|+||||||+|+|++........|..+.......+.+... ...+.++|+||...- ..+
T Consensus 3 ivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~gl 82 (274)
T cd01900 3 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL 82 (274)
T ss_pred EeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHH
Confidence 6899999999999999998774433333232333333333322 235899999994321 112
Q ss_pred ---hHhHhcCCcEEEEEeeCC
Q 040835 62 ---TSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 62 ---~~~~~~~~d~~i~v~d~~ 79 (206)
....++.+|++++|+|..
T Consensus 83 g~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 83 GNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHhCCEEEEEEeCc
Confidence 223467899999999863
No 301
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=5.3e-11 Score=85.92 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=89.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh-----hhHhHhcCCcEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA-----VTSAYYRGAVGAML 74 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~~i~ 74 (206)
++|..|+|||++-..++.+... +...++.++++....+.+- .++.+.+||++|++.+-. .....+++++++|+
T Consensus 9 LMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~ 87 (295)
T KOG3886|consen 9 LMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIY 87 (295)
T ss_pred EeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeheeeee
Confidence 5899999999987776654432 2223332334444444333 347899999999985422 34567899999999
Q ss_pred EeeCCChhhHHHHHHHH---HHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHH----HHHHHHHcCCeEEEeccCCCC
Q 040835 75 VYDITKRQSFDNVARWL---EELRGHADKNIIIMLVGNKSDLETLRA--VPTED----AKEFAEKEGLCFMETSALEST 144 (206)
Q Consensus 75 v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~----~~~~~~~~~~~~~~~Sa~~~~ 144 (206)
|+|+...+-..++..+- ..+.+.. +...+.+.++|+|+..... ...++ .+.+....++.+|.+|..+..
T Consensus 88 vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwDet 165 (295)
T KOG3886|consen 88 VFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIWDET 165 (295)
T ss_pred eeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchhhHH
Confidence 99998876444444333 3333333 5677889999999954222 12222 233333345678888877654
No 302
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.17 E-value=1.9e-10 Score=89.06 Aligned_cols=104 Identities=18% Similarity=0.062 Sum_probs=64.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT-- 121 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 121 (206)
.+.+.|+||+|..... ...+..+|.++++...... +.+......+ ..+|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 4678999999854222 2356778888887554433 3333332222 2477899999999864221110
Q ss_pred H----HHHHHHH---HcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 122 E----DAKEFAE---KEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 122 ~----~~~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
. ....+.. .+..+++.+|++++.|++++++++.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 0011111 12346999999999999999999988744
No 303
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.14 E-value=1.9e-09 Score=84.14 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=86.3
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCCh----------hhHHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 040835 42 HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKR----------QSFDNVARWLEELRGHA-DKNIIIMLVGNK 110 (206)
Q Consensus 42 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK 110 (206)
..+..+.+||++|+...+..|..++.+++++|+|+|+++. ..+......+..+.... -.++|+++++||
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK 237 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNK 237 (317)
T ss_pred ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccC
Confidence 3468899999999999999999999999999999999874 23333333333333322 257999999999
Q ss_pred CCCCc----------------CCCCCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 040835 111 SDLET----------------LRAVPTEDAKEFAEK----------EGLCFMETSALESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 111 ~D~~~----------------~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~ 161 (206)
.|+.. ...-+.+.+..+... ..+..+.++|.+..++..+|..+.+.|+...
T Consensus 238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 99621 001234444444332 1244678899999999999999999988764
No 304
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.2e-10 Score=87.84 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=85.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC--------------------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS--------------------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 60 (206)
|+-.|.+|||||-++|+--.-.... ...-|+.+....+.++..+..+.+.||||++.|..
T Consensus 17 IISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSE 96 (528)
T COG4108 17 IISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSE 96 (528)
T ss_pred EEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccch
Confidence 4568999999999998742110000 01134555555666677788899999999999999
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL 133 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 133 (206)
-+...+..+|.++.|+|+... ++.. ..++.. .++ .+.|++-++||+|.... -+.+.+.++.+.+++
T Consensus 97 DTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeV-crl--R~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i 163 (528)
T COG4108 97 DTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEV-CRL--RDIPIFTFINKLDREGR--DPLELLDEIEEELGI 163 (528)
T ss_pred hHHHHHHhhheeeEEEecccC--ccHHHHHHHHH-Hhh--cCCceEEEeeccccccC--ChHHHHHHHHHHhCc
Confidence 999999999999999999754 2222 223332 333 47999999999997542 234445555555444
No 305
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.9e-10 Score=96.04 Aligned_cols=110 Identities=17% Similarity=0.221 Sum_probs=83.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC----------------ccccceeeEEEEEEECCe-EEEEEEEeCCCchhhhhhhH
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS----------------KATIGVEFQTKTLVIHHK-NVKAQIWDTAGQERYRAVTS 63 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~ 63 (206)
++|+-.+|||||..+|+...-.... ...-|+++.....++.+. +..++++||||+-+|.....
T Consensus 15 I~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~ 94 (697)
T COG0480 15 IVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVE 94 (697)
T ss_pred EEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHH
Confidence 4788899999999999853111110 011356666666677777 49999999999999999999
Q ss_pred hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 64 AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 64 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
..++..|++++|+|+...-.......|.+... .++|.++++||+|..
T Consensus 95 rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~ 141 (697)
T COG0480 95 RSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL 141 (697)
T ss_pred HHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence 99999999999999987654444455644433 479999999999974
No 306
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.13 E-value=4.1e-10 Score=86.09 Aligned_cols=135 Identities=16% Similarity=0.212 Sum_probs=69.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC----------ccccceeeEEEEEEECCeEEEEEEEeCCCchh-------------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS----------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQER------------- 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------- 57 (206)
|+|..|+|||||+|.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 9 VvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~ 88 (281)
T PF00735_consen 9 VVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVD 88 (281)
T ss_dssp EEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHHH
Confidence 6899999999999999997654442 12222333333444467788999999999211
Q ss_pred -----hhhhhHh---------HhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--C
Q 040835 58 -----YRAVTSA---------YYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--P 120 (206)
Q Consensus 58 -----~~~~~~~---------~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 120 (206)
|...... .=..+|+++|+++++.+. .-.++ ..+..+. ..+++|-|+.|.|.....++ -
T Consensus 89 yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls----~~vNvIPvIaKaD~lt~~el~~~ 163 (281)
T PF00735_consen 89 YIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS----KRVNVIPVIAKADTLTPEELQAF 163 (281)
T ss_dssp HHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT----TTSEEEEEESTGGGS-HHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc----ccccEEeEEecccccCHHHHHHH
Confidence 1110000 012568999999987532 11112 2333333 35788999999997531211 1
Q ss_pred HHHHHHHHHHcCCeEEEecc
Q 040835 121 TEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~Sa 140 (206)
.+.+.......++.+|....
T Consensus 164 k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 164 KQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHcCceeecccc
Confidence 23344455567777665443
No 307
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.12 E-value=3.2e-10 Score=88.94 Aligned_cols=154 Identities=13% Similarity=0.127 Sum_probs=76.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccc--cceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh-----HhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKAT--IGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA-----YYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~~d~~ 72 (206)
|+|.+|+|||||+|+|.+-.-.. ...++ +.++.......... .-.+.+||.||..-....... -+...|.+
T Consensus 40 V~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~f 118 (376)
T PF05049_consen 40 VTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFF 118 (376)
T ss_dssp EEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEE
T ss_pred EECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccccccCEE
Confidence 58999999999999998743322 22221 12233333333322 234899999995322222222 35678988
Q ss_pred EEEeeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCC-------cCCCCCHH----HHHHHHHH----cCC---
Q 040835 73 MLVYDITKRQSFDNVAR-WLEELRGHADKNIIIMLVGNKSDLE-------TLRAVPTE----DAKEFAEK----EGL--- 133 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~----~~~~~~~~----~~~--- 133 (206)
|++.+-. |....- +...+.. .++|+++|-+|+|.. .++...++ ++++.+.+ .|+
T Consensus 119 iii~s~r----f~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P 191 (376)
T PF05049_consen 119 IIISSER----FTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEP 191 (376)
T ss_dssp EEEESSS------HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS-
T ss_pred EEEeCCC----CchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 8776543 332222 2233444 368999999999961 12233332 33333332 243
Q ss_pred eEEEeccCCC--CCHHHHHHHHHHHHHHHhh
Q 040835 134 CFMETSALES--TNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 134 ~~~~~Sa~~~--~~v~~~~~~l~~~i~~~~~ 162 (206)
++|-+|..+- .++..+.+.+.+.+..++.
T Consensus 192 ~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 192 QVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp -EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred ceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 5899998874 4577777777766655544
No 308
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2.2e-10 Score=92.65 Aligned_cols=147 Identities=23% Similarity=0.258 Sum_probs=95.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC-----------------------------CccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD-----------------------------SKATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
|+|...+|||||+.+|+..--.+. ...--|.+.......++.....+.|+|
T Consensus 182 v~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~~tliD 261 (603)
T KOG0458|consen 182 VLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKIVTLID 261 (603)
T ss_pred EEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCceeEEEec
Confidence 579999999999999886211000 011134555555666667778899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChh---hHH---HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH-
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQ---SFD---NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA- 124 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~- 124 (206)
+||+..|-.....-...+|++|+|+|++-.+ .|+ ..++....++.+. -..++|++||+|+..=.+-..+++
T Consensus 262 aPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk 339 (603)
T KOG0458|consen 262 APGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIK 339 (603)
T ss_pred CCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHHHHHHHH
Confidence 9999888877777788999999999997532 121 1222222223322 356899999999864222233332
Q ss_pred ---HHHH-HHcC-----CeEEEeccCCCCCHHHH
Q 040835 125 ---KEFA-EKEG-----LCFMETSALESTNVELA 149 (206)
Q Consensus 125 ---~~~~-~~~~-----~~~~~~Sa~~~~~v~~~ 149 (206)
..+. +..| +.|+.+|+..|+|+-..
T Consensus 340 ~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 340 NKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2333 3333 46999999999986544
No 309
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.9e-10 Score=87.02 Aligned_cols=113 Identities=21% Similarity=0.145 Sum_probs=81.5
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~ 122 (206)
..+.++|.||++-.......-..-.|++++|++++.+......++.+..+.-.. -..++++=||+|+..... -+.+
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHH
Confidence 457899999998765544444556799999999998766555555555554432 356899999999964222 1344
Q ss_pred HHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 123 DAKEFAEKE---GLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 123 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++.+|.+.. +.|++.+||..+.|++.+++.+.+.+..
T Consensus 164 qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 555665543 5799999999999999999888877643
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=5.5e-10 Score=83.55 Aligned_cols=182 Identities=17% Similarity=0.183 Sum_probs=118.7
Q ss_pred ccCCCCCHHHHHHHHhcCC----------C-----CCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 2 IGDSAVGKSQLLARFARDE----------F-----SLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
+|.-.=|||||..+++.-- + .++ ....|+++....+.++..+..+..+|+||+..|-.....-.
T Consensus 18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPe-Ek~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgA 96 (394)
T COG0050 18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPE-EKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGA 96 (394)
T ss_pred eccccCchhhHHHHHHHHHHhhccccccchhhhccCch-HhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhH
Confidence 6888999999998877521 1 111 12246777777787777788899999999999877666666
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcCC-----eEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV---PTEDAKEFAEKEGL-----CFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~-----~~~~ 137 (206)
.++|+.|+|++++|..-- ..++.+...+ +.++| +++++||+|+..++++ -..+++++...++. |++.
T Consensus 97 aqmDgAILVVsA~dGpmP-qTrEHiLlar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~ 172 (394)
T COG0050 97 AQMDGAILVVAATDGPMP-QTREHILLAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIR 172 (394)
T ss_pred HhcCccEEEEEcCCCCCC-cchhhhhhhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceee
Confidence 789999999999985421 1111111112 23564 7889999999764443 23567888888875 5777
Q ss_pred eccCCC-CCHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCccccccccccCCC
Q 040835 138 TSALES-TNVELAFLTVLTEIYRIVSKKALTANDESESGGSSSLLKATNIVVPGQ 191 (206)
Q Consensus 138 ~Sa~~~-~~v~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (206)
-|+... +|-.. +..-+..++... -.....+++....++.+|-...+.++++
T Consensus 173 gSal~ale~~~~-~~~~i~eLm~av--d~yip~Per~~dkPflmpvEdvfsIsgr 224 (394)
T COG0050 173 GSALKALEGDAK-WEAKIEELMDAV--DSYIPTPERDIDKPFLMPVEDVFSISGR 224 (394)
T ss_pred chhhhhhcCCcc-hHHHHHHHHHHH--HhcCCCCCCcccccccccceeeEEEcCc
Confidence 776653 33222 222222222222 3456678888888888887777766554
No 311
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.11 E-value=1.3e-09 Score=81.93 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=66.7
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 124 (206)
+.+.|++|.|--.-. -....-+|.++++.-+.-.+.+..++.-+.++.. ++++||.|... .+....+.
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~-A~~a~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKG-AEKAAREL 211 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhh-HHHHHHHH
Confidence 558889997732222 2345668999998877766666666654444433 78999999643 11111111
Q ss_pred HH---HHH------HcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 125 KE---FAE------KEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 125 ~~---~~~------~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.. +.. .|..+++.|||..++|++++++.+.++....
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 11 111 1234799999999999999999988776544
No 312
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.10 E-value=6.3e-09 Score=81.86 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=85.7
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCCh----------hhHHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 040835 42 HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKR----------QSFDNVARWLEELRGHA-DKNIIIMLVGNK 110 (206)
Q Consensus 42 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK 110 (206)
..+..+.+||.+|+...+..|..++.+++++|||+|+++. ..+......+..+.... -.++|+++++||
T Consensus 181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK 260 (342)
T smart00275 181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK 260 (342)
T ss_pred ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence 3457789999999999999999999999999999999973 23444444444443322 257999999999
Q ss_pred CCCCc--------------CC-CCCHHHHHHHHHH-----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 111 SDLET--------------LR-AVPTEDAKEFAEK-----------EGLCFMETSALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 111 ~D~~~--------------~~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
.|+.. .. ..+.+.+..+... ..+..+.|+|.+..++..+|..+.+.|++...
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 99731 00 0133344433322 12346788999999999999999998887653
No 313
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.10 E-value=2e-10 Score=86.88 Aligned_cols=175 Identities=18% Similarity=0.136 Sum_probs=112.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch---------hhhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE---------RYRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~~~~d~ 71 (206)
|+|.+|+|||||+++|++....+...-.-+.+.......+.. ...+.+.||-|.- .|.. +......+|+
T Consensus 183 vVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~A-TLeeVaeadl 260 (410)
T KOG0410|consen 183 VVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQA-TLEEVAEADL 260 (410)
T ss_pred EEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHH-HHHHHhhcce
Confidence 589999999999999997655444332222232233333333 3557888999832 2333 3334567999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc----EEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNII----IMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVE 147 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 147 (206)
++.|.|++++..-......+..+....-...| ++=|-||+|.... ... .+.++ .+.+|+++|.|++
T Consensus 261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~-~~e-------~E~n~--~v~isaltgdgl~ 330 (410)
T KOG0410|consen 261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED-EVE-------EEKNL--DVGISALTGDGLE 330 (410)
T ss_pred EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc-cCc-------cccCC--ccccccccCccHH
Confidence 99999999987655545555555554322233 3456777876531 111 11222 4667999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcccCCCCCCCCCCccccccccc
Q 040835 148 LAFLTVLTEIYRIVSKKALTANDESESGGSSSLLKATNIV 187 (206)
Q Consensus 148 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (206)
++++.+-..+..............-...-.+|.+...-++
T Consensus 331 el~~a~~~kv~~~t~~~e~~Lr~d~gd~~~~wly~e~~vv 370 (410)
T KOG0410|consen 331 ELLKAEETKVASETTVDEDQLRNDDGDDADGWLYSEDEVV 370 (410)
T ss_pred HHHHHHHHHhhhhheeeeEEeecCCCccchhheeecceEE
Confidence 9999998888887777777776666666667776664333
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.07 E-value=3.2e-10 Score=86.10 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=40.2
Q ss_pred CcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 102 IIIMLVGNKSDLETLRAVPTEDAKEFAEKE--GLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 102 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
..-++|+||+|+........+......+.. +++++.+|+++++|+++++.||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 556899999999642222344444444443 5789999999999999999999763
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.05 E-value=3.4e-09 Score=79.00 Aligned_cols=68 Identities=12% Similarity=0.097 Sum_probs=43.0
Q ss_pred EEEEEEeCCCchh-------------hhhhhHhHhc-CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 45 VKAQIWDTAGQER-------------YRAVTSAYYR-GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 45 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
..+.++|+||... ...+...|++ ..+++++|+|+...-.-.....+...+.. .+.++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 4578999999631 2334556777 45688889987653222222223233332 46899999999
Q ss_pred CCCCc
Q 040835 111 SDLET 115 (206)
Q Consensus 111 ~D~~~ 115 (206)
.|...
T Consensus 202 ~D~~~ 206 (240)
T smart00053 202 LDLMD 206 (240)
T ss_pred CCCCC
Confidence 99864
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.04 E-value=3.6e-10 Score=83.69 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=63.6
Q ss_pred EEEEEEeCCC--chhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040835 45 VKAQIWDTAG--QERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE 122 (206)
Q Consensus 45 ~~~~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 122 (206)
+.+.|++|.| +.+. ....-+|.+++|+.+.-.+.+..++.-+.++. =++|+||.|...... ...
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNKaD~~gA~~-~~~ 187 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNKADRPGADR-TVR 187 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE--SHHHHHH-HHH
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeCCChHHHHH-HHH
Confidence 5678899876 4433 35677999999999987666555554433332 378999999643111 122
Q ss_pred HHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 123 DAKEFAEK-------EGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 123 ~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+..... |..+++.|||.++.|++++++.+.++-...
T Consensus 188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 22222221 235899999999999999999988765433
No 317
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=2.3e-09 Score=77.75 Aligned_cols=94 Identities=22% Similarity=0.108 Sum_probs=66.0
Q ss_pred hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcC
Q 040835 58 YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFA-----EKEG 132 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 132 (206)
+..++..+++.+|++++|+|+++... .|...+.... .+.|+++|+||+|+... .........+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcC
Confidence 57788889999999999999987542 1222221111 46899999999998642 22333333333 2333
Q ss_pred C---eEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 133 L---CFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 133 ~---~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+ .++.+||++++|+++++..+.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 5899999999999999999987764
No 318
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=7.9e-09 Score=79.12 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=85.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC----CCCCc---cccceeeEEEEEEE-------CCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEF----SLDSK---ATIGVEFQTKTLVI-------HHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~----~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|.-.+|||||.++|..-.. ..... ..++.+..-..+.+ .+....+.++|+||+...-.....-.
T Consensus 12 iLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiigga 91 (522)
T KOG0461|consen 12 ILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGA 91 (522)
T ss_pred eEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhh
Confidence 578999999999999986322 11111 11111111111111 23456789999999865444344444
Q ss_pred cCCcEEEEEeeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHH-HHHH---HHc----CCeE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVAR-WLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDA-KEFA---EKE----GLCF 135 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~-~~~~---~~~----~~~~ 135 (206)
.-.|..++|+|+...-.-..++- .+..+ . -...+||+||+|..++.+ -..+++ .+.. +.. +.|+
T Consensus 92 qiiDlm~lviDv~kG~QtQtAEcLiig~~--~---c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 92 QIIDLMILVIDVQKGKQTQTAECLIIGEL--L---CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPI 166 (522)
T ss_pred heeeeeeEEEehhcccccccchhhhhhhh--h---ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCce
Confidence 55688999999975432222111 11111 1 134688899998754211 111111 1111 222 2689
Q ss_pred EEeccCCC----CCHHHHHHHHHHHHHH
Q 040835 136 METSALES----TNVELAFLTVLTEIYR 159 (206)
Q Consensus 136 ~~~Sa~~~----~~v~~~~~~l~~~i~~ 159 (206)
+++|+.+| +++.++...+-..+++
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 99999999 6666666665555543
No 319
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.01 E-value=5.6e-09 Score=86.69 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=65.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceee-EEEEEEECCeEEEEEEEeCCCchhhh-------hh---hHhHhc--
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEF-QTKTLVIHHKNVKAQIWDTAGQERYR-------AV---TSAYYR-- 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~~~-- 67 (206)
|+|.+|+|||||+|+|++...........+++. .......+ ...+.++||||..... .. ...++.
T Consensus 123 LVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~ 200 (763)
T TIGR00993 123 VLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKN 200 (763)
T ss_pred EECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcC
Confidence 589999999999999999864333321112222 11122222 4678999999964321 11 122333
Q ss_pred CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCc
Q 040835 68 GAVGAMLVYDITKRQSFDNVARWLEELRGHADK--NIIIMLVGNKSDLET 115 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 115 (206)
..|++|+|..++..........++..+....+. -..+||+.|+.|..+
T Consensus 201 gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 201 PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 589999998775332211222344444443332 245899999999764
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.01 E-value=1.1e-09 Score=76.93 Aligned_cols=96 Identities=17% Similarity=0.109 Sum_probs=65.2
Q ss_pred hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEE
Q 040835 58 YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFME 137 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (206)
|..+.+.+++++|++|+|+|++++..... ..+...+.. .+.|+++++||+|+..... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 45567788889999999999987543221 122222221 3689999999999853111 11122333445678999
Q ss_pred eccCCCCCHHHHHHHHHHHHHH
Q 040835 138 TSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 138 ~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+||+++.|++++++.+.+.+..
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999877653
No 321
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.00 E-value=7.5e-09 Score=79.92 Aligned_cols=157 Identities=13% Similarity=0.183 Sum_probs=93.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC----------CccccceeeEEEEEEECCeEEEEEEEeCCCchhh------------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD----------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY------------ 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------------ 58 (206)
++|+.|+|||||+|.|++...... ..+++........+.-++..+.+.++||||.-.+
T Consensus 28 ~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~ 107 (373)
T COG5019 28 VVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVD 107 (373)
T ss_pred EecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHH
Confidence 589999999999999998743322 2344445555555555777888999999992211
Q ss_pred --hhhhHhHh--------------cCCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--
Q 040835 59 --RAVTSAYY--------------RGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRAV-- 119 (206)
Q Consensus 59 --~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 119 (206)
......|+ ..+++++|.+.++.+. +..+ -..+..+.. .+-+|-|+.|.|.....++
T Consensus 108 yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~~El~~ 182 (373)
T COG5019 108 YIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK----RVNLIPVIAKADTLTDDELAE 182 (373)
T ss_pred HHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc----ccCeeeeeeccccCCHHHHHH
Confidence 11111121 2478999999987643 2222 223333333 4567788899997532222
Q ss_pred CHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhh
Q 040835 120 PTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164 (206)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~~~ 164 (206)
-.+.+++....+++++|. -.+.+.-.+......+.+....+.-
T Consensus 183 ~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~PFA 225 (373)
T COG5019 183 FKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIPFA 225 (373)
T ss_pred HHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCCeE
Confidence 234466677778999885 2555543333344444455544443
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.4e-08 Score=77.59 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=50.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------------CeEEEEEEEeCCCch-------h
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH----------------HKNVKAQIWDTAGQE-------R 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~-------~ 57 (206)
++|.||||||||.|+++.........|..+++-....+.+. .....+.++|.+|.- .
T Consensus 7 IVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG 86 (372)
T COG0012 7 IVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG 86 (372)
T ss_pred EecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence 68999999999999999988654444442322222222221 123568899998832 1
Q ss_pred hhhhhHhHhcCCcEEEEEeeCC
Q 040835 58 YRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
....-..-++.+|+++.|++..
T Consensus 87 LGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 87 LGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cchHHHHhhhhcCeEEEEEEec
Confidence 2222334468899999999975
No 323
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.1e-08 Score=80.73 Aligned_cols=153 Identities=15% Similarity=0.034 Sum_probs=101.4
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 2 IGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
+|.---|||||+.++.+..-..-. ...-|+++..........+..+.++|.||++++-.....-+...|.+++|++.++
T Consensus 6 ~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~de 85 (447)
T COG3276 6 AGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADE 85 (447)
T ss_pred eeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCcc
Confidence 466778999999999986443221 1122455555555555556689999999999988777777889999999999975
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE---GLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
.-.... .+.+..+... .....++++||+|..++. ...+...++.... ..++|.+|+.+++||+++.+.|.+..
T Consensus 86 Gl~~qt-gEhL~iLdll--gi~~giivltk~D~~d~~-r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 86 GLMAQT-GEHLLILDLL--GIKNGIIVLTKADRVDEA-RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred Ccchhh-HHHHHHHHhc--CCCceEEEEeccccccHH-HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 432111 1111112221 124468999999986522 1222233333332 45789999999999999999999877
Q ss_pred H
Q 040835 158 Y 158 (206)
Q Consensus 158 ~ 158 (206)
-
T Consensus 162 ~ 162 (447)
T COG3276 162 E 162 (447)
T ss_pred h
Confidence 3
No 324
>PRK12289 GTPase RsgA; Reviewed
Probab=98.96 E-value=3.5e-09 Score=83.26 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=67.1
Q ss_pred hhhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEe
Q 040835 60 AVTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMET 138 (206)
Q Consensus 60 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (206)
.+.+..+.++|.+++|+|+.++. ....+.+|+..+.. .++|+++|+||+|+..... .+........+|++++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34455688999999999998765 44456777765533 4689999999999863211 122233345678899999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 040835 139 SALESTNVELAFLTVLT 155 (206)
Q Consensus 139 Sa~~~~~v~~~~~~l~~ 155 (206)
||+++.|+++++..+..
T Consensus 156 SA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 156 SVETGIGLEALLEQLRN 172 (352)
T ss_pred EcCCCCCHHHHhhhhcc
Confidence 99999999999988864
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=4.9e-09 Score=86.24 Aligned_cols=109 Identities=27% Similarity=0.317 Sum_probs=76.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccc---------------cceeeEEE--EEE---ECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKAT---------------IGVEFQTK--TLV---IHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~---------------~~~~~~~~--~~~---~~~~~~~~~i~D~~G~~~~~~ 60 (206)
++|+-+.|||+|+..|.....+.-...+ -+..+... ++. ..++.+-++++||||+-.|.+
T Consensus 133 l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~D 212 (971)
T KOG0468|consen 133 LVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSD 212 (971)
T ss_pred EeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchH
Confidence 5799999999999999886553322111 11111111 111 135567789999999999999
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
.....++.+|++++++|+.+.-.+...+-....+ ..+.|+++|+||+|.
T Consensus 213 E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 213 ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence 8999999999999999998876554333322222 357999999999996
No 326
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.3e-08 Score=79.09 Aligned_cols=156 Identities=14% Similarity=0.182 Sum_probs=92.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC---------CccccceeeEEEEEEECCeEEEEEEEeCCCchh-------h------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD---------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-------Y------ 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~------ 58 (206)
++|..|.|||||+|.|+...+... ...+.........+.-++..+.+.++||||.-. |
T Consensus 26 vvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~y 105 (366)
T KOG2655|consen 26 VVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVNY 105 (366)
T ss_pred EecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhHH
Confidence 589999999999999998755432 122333444444444467788899999999211 1
Q ss_pred -hhhhHh-----------Hhc--CCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CH
Q 040835 59 -RAVTSA-----------YYR--GAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PT 121 (206)
Q Consensus 59 -~~~~~~-----------~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 121 (206)
...... -+. .+++++|.+.++.+. +..+ ...+..+. ..+.+|-|+.|.|.....++ -.
T Consensus 106 i~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~El~~~K 180 (366)
T KOG2655|consen 106 IDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDELNQFK 180 (366)
T ss_pred HHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh----ccccccceeeccccCCHHHHHHHH
Confidence 111111 122 678999999987542 1111 12222232 35667888889997532222 23
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhh
Q 040835 122 EDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKK 164 (206)
Q Consensus 122 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~~~ 164 (206)
..+.+.+..+++++|....-.. ++.+....+.+....+.-
T Consensus 181 ~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~PFA 220 (366)
T KOG2655|consen 181 KRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIPFA 220 (366)
T ss_pred HHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCCeE
Confidence 4456666677888877665544 555555555555554443
No 327
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=8.6e-09 Score=75.24 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=99.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh---hhHhHhcCCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA---VTSAYYRGAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i~v~d 77 (206)
++|...+|||++....+....+-+.. ....+.....-.+.+.-+.+.+||.||+-.+.. -....++++.+.|+|+|
T Consensus 32 LMG~rRsGKsSI~KVVFhkMsPneTl-flESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvID 110 (347)
T KOG3887|consen 32 LMGLRRSGKSSIQKVVFHKMSPNETL-FLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVID 110 (347)
T ss_pred EEeecccCcchhhheeeeccCCCcee-EeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEe
Confidence 57999999999887666544322211 111111111112233457899999999865432 24567899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCC-CCCH------HHHHHHHHH----cCCeEEEeccCCCC
Q 040835 78 ITKRQSFDNVARWLEELRGHA--DKNIIIMLVGNKSDLETLR-AVPT------EDAKEFAEK----EGLCFMETSALEST 144 (206)
Q Consensus 78 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~-~~~~------~~~~~~~~~----~~~~~~~~Sa~~~~ 144 (206)
+.+. -.+.+.++...+.+.. +++..+-|++.|.|...+. .+.. .....++.. ..+.++-||..+.
T Consensus 111 aQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyDH- 188 (347)
T KOG3887|consen 111 AQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYDH- 188 (347)
T ss_pred chHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecch-
Confidence 9764 2455555655555443 4778899999999964311 1111 111122221 1245788888876
Q ss_pred CHHHHHHHHHHHHHHHhhh
Q 040835 145 NVELAFLTVLTEIYRIVSK 163 (206)
Q Consensus 145 ~v~~~~~~l~~~i~~~~~~ 163 (206)
.+-+.|..+++.+..+.+.
T Consensus 189 SIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 189 SIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred HHHHHHHHHHHHHhhhchh
Confidence 4889999999988877663
No 328
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=5.4e-09 Score=80.45 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=67.4
Q ss_pred HhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccC
Q 040835 63 SAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSAL 141 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 141 (206)
..++.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.... .......+....+++++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 34578999999999999887 77888888876654 368999999999996421 1112233344568899999999
Q ss_pred CCCCHHHHHHHHHH
Q 040835 142 ESTNVELAFLTVLT 155 (206)
Q Consensus 142 ~~~~v~~~~~~l~~ 155 (206)
++.|+++++..+..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999998887653
No 329
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.91 E-value=1.1e-08 Score=82.51 Aligned_cols=173 Identities=21% Similarity=0.363 Sum_probs=125.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|..++|||+|+.+++.+.+.....+- + ..+...+..++....+.+.|.+|.. ...|...+|++||||.+-+
T Consensus 35 ivg~~~sgktalvhr~ltgty~~~e~~e-~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d 107 (749)
T KOG0705|consen 35 IVGTSQSGKTALVHRYLTGTYTQDESPE-G-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVED 107 (749)
T ss_pred eeecccCCceeeeeeeccceeccccCCc-C-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEecc
Confidence 6899999999999999998886665443 3 3445666677888889999998833 2456678999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCC--cCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLE--TLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
..++..+..+...+..+.. ..+|+++++++.-.. ..+.....+.+.++.++ -..+|++.+..|.++...|+.+...
T Consensus 108 ~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 108 EQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred ccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHH
Confidence 9999988887777665442 457788877764432 23444555566666555 4679999999999999999999999
Q ss_pred HHHHhhhhhcccC-CCCCCCCCCcc
Q 040835 157 IYRIVSKKALTAN-DESESGGSSSL 180 (206)
Q Consensus 157 i~~~~~~~~~~~~-~~~~~~~~~~~ 180 (206)
+...+.+...... ....+..+++.
T Consensus 188 ~i~~~~~qq~~~~~~~s~~~s~~~s 212 (749)
T KOG0705|consen 188 IVQLRKYQQLPASSSKSLPESPSHS 212 (749)
T ss_pred HHHHHhhhhcccccccccccCCccc
Confidence 8777665544333 33444444444
No 330
>PRK12288 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.6e-08 Score=79.57 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=66.5
Q ss_pred hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHHHHcCCeEEEeccCCCC
Q 040835 66 YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV-PTEDAKEFAEKEGLCFMETSALEST 144 (206)
Q Consensus 66 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 144 (206)
..++|.+++|++.+...++..+.+|+..+.. .++|.++|+||+|+...... ...+........+++++++||++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 3569999999999887889999999875543 46899999999999642211 1122333445678899999999999
Q ss_pred CHHHHHHHHHH
Q 040835 145 NVELAFLTVLT 155 (206)
Q Consensus 145 ~v~~~~~~l~~ 155 (206)
|+++++..+..
T Consensus 195 GideL~~~L~~ 205 (347)
T PRK12288 195 GLEELEAALTG 205 (347)
T ss_pred CHHHHHHHHhh
Confidence 99999988864
No 331
>PRK00098 GTPase RsgA; Reviewed
Probab=98.86 E-value=9.7e-09 Score=79.48 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=63.7
Q ss_pred HhcCCcEEEEEeeCCChhhHH-HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFD-NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALES 143 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 143 (206)
+..++|.+++|+|+.++.... .+.+|+..+.. .++|+++|+||+|+..... ...+........+++++.+||+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 358999999999998876443 44677766554 4689999999999953211 122344555667889999999999
Q ss_pred CCHHHHHHHH
Q 040835 144 TNVELAFLTV 153 (206)
Q Consensus 144 ~~v~~~~~~l 153 (206)
.|+++++..+
T Consensus 153 ~gi~~L~~~l 162 (298)
T PRK00098 153 EGLDELKPLL 162 (298)
T ss_pred ccHHHHHhhc
Confidence 9999998876
No 332
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.83 E-value=2.4e-08 Score=79.29 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=69.3
Q ss_pred chhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH----HHHH
Q 040835 55 QERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKE----FAEK 130 (206)
Q Consensus 55 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~ 130 (206)
.+.|..+...+.+.++++++|+|+.+... .|...+.+.. .+.|+++|+||+|+.+ +....+++.. ++.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~-~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFV-GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHh-CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence 56788888888899999999999976541 2333333332 2579999999999865 3333444443 4556
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 040835 131 EGL---CFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 131 ~~~---~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
.++ .++.+||+++.|+++++..+.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999988654
No 333
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=6.6e-08 Score=74.79 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=72.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe-------E-----------------------------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK-------N----------------------------- 44 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------------------------- 44 (206)
++|.-.+|||||++.|++..++........++..-..++.... .
T Consensus 63 l~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp 142 (532)
T KOG1954|consen 63 LVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLP 142 (532)
T ss_pred EEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCC
Confidence 5799999999999999999886443322222222232322111 0
Q ss_pred ----EEEEEEeCCCch-----------hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEe
Q 040835 45 ----VKAQIWDTAGQE-----------RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGN 109 (206)
Q Consensus 45 ----~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n 109 (206)
..+.|+||||.- .|.....=+...+|.+|++||+..-+--++..+.+..+.. ..-.+-||+|
T Consensus 143 ~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~EdkiRVVLN 219 (532)
T KOG1954|consen 143 NQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HEDKIRVVLN 219 (532)
T ss_pred hhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---CcceeEEEec
Confidence 237899999931 2444556678899999999998654433445555555544 3455889999
Q ss_pred CCCCCc
Q 040835 110 KSDLET 115 (206)
Q Consensus 110 K~D~~~ 115 (206)
|.|...
T Consensus 220 KADqVd 225 (532)
T KOG1954|consen 220 KADQVD 225 (532)
T ss_pred cccccC
Confidence 999764
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.75 E-value=1.6e-08 Score=69.75 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=36.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 55 (206)
|+|.+|+|||||+|+|++........ ..+.+.....+.++. .+.+|||||.
T Consensus 88 ~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 88 LVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 58999999999999999887653332 224455555555543 5799999995
No 335
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=2.5e-07 Score=67.68 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=75.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC---------CccccceeeEEEEEEECCeEEEEEEEeCCCchh--------------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD---------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-------------- 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------- 57 (206)
|+|..|.|||||+|+|+....... ...|..+......+.-++-...+.++||||.-+
T Consensus 51 VVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~ky 130 (336)
T KOG1547|consen 51 VVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKY 130 (336)
T ss_pred EEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHHH
Confidence 689999999999999987544331 112222222222334456678899999999211
Q ss_pred ----hhhh--------hHhHhc--CCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc--CCCCC
Q 040835 58 ----YRAV--------TSAYYR--GAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET--LRAVP 120 (206)
Q Consensus 58 ----~~~~--------~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~ 120 (206)
|... +...+. .++.++|.+.++.+. +..+ ..++..+.+. +.++-|+-|.|-.. ++..-
T Consensus 131 IneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~v----vNvvPVIakaDtlTleEr~~F 205 (336)
T KOG1547|consen 131 INEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTEV----VNVVPVIAKADTLTLEERSAF 205 (336)
T ss_pred HHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhhh----heeeeeEeecccccHHHHHHH
Confidence 1111 111122 357788888887543 2222 1233333332 34666777999531 12222
Q ss_pred HHHHHHHHHHcCCeEEEeccCCCC
Q 040835 121 TEDAKEFAEKEGLCFMETSALEST 144 (206)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~Sa~~~~ 144 (206)
.+.+++-...+++.++.-.+.+..
T Consensus 206 kqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 206 KQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHhcCcccccccccccc
Confidence 333444555677777766555543
No 336
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7.5e-07 Score=68.37 Aligned_cols=184 Identities=19% Similarity=0.176 Sum_probs=114.8
Q ss_pred ccCCCCCHHHHHHHHhcC----------CCCCC----CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhc
Q 040835 2 IGDSAVGKSQLLARFARD----------EFSLD----SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYR 67 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 67 (206)
+|.-.=|||||-.++..- .+... ....-|+++....+.+......+--.||||+.+|-.....-..
T Consensus 60 IGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaa 139 (449)
T KOG0460|consen 60 IGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAA 139 (449)
T ss_pred cccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCcc
Confidence 577788999999887751 11100 0122467777777777777788888999999988766655667
Q ss_pred CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC---CCHHHHHHHHHHcCC-----eEEEec
Q 040835 68 GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA---VPTEDAKEFAEKEGL-----CFMETS 139 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~-----~~~~~S 139 (206)
+.|+.|+|+.++|..- ...++.+...++.. -..++|++||.|+.++.+ +-+.+++++...+|+ |++.-|
T Consensus 140 qMDGaILVVaatDG~M-PQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GS 216 (449)
T KOG0460|consen 140 QMDGAILVVAATDGPM-PQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGS 216 (449)
T ss_pred ccCceEEEEEcCCCCC-cchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecc
Confidence 8899999999998642 22222222222221 144889999999975333 234567888888864 677766
Q ss_pred cC---CCCCHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCccccccccccCCC
Q 040835 140 AL---ESTNVELAFLTVLTEIYRIVSKKALTANDESESGGSSSLLKATNIVVPGQ 191 (206)
Q Consensus 140 a~---~~~~v~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (206)
|+ .+.+-+ +=...+..+++.. -...+.+.+.-..++.+|-....+++++
T Consensus 217 AL~ALeg~~pe-ig~~aI~kLldav--Dsyip~P~R~~~~pFl~pie~vfsI~GR 268 (449)
T KOG0460|consen 217 ALCALEGRQPE-IGLEAIEKLLDAV--DSYIPTPERDLDKPFLLPIEDVFSIPGR 268 (449)
T ss_pred hhhhhcCCCcc-ccHHHHHHHHHHH--hccCCCcccccCCCceeehhheeeecCC
Confidence 54 443211 1111222222221 2335667788888888887777777665
No 337
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.64 E-value=9.8e-07 Score=68.77 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=87.5
Q ss_pred EECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhh-------HHHHHHHHHHHHhcC----CCCCcEEEE
Q 040835 39 VIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQS-------FDNVARWLEELRGHA----DKNIIIMLV 107 (206)
Q Consensus 39 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~----~~~~p~ivv 107 (206)
.+......+.++|.+|+...+.-|...+.+++++|+|+++++.+. ...+.+-+..+...+ -.+.+++++
T Consensus 189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF 268 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF 268 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence 344456889999999999999999999999999999999987432 122222222222222 257899999
Q ss_pred EeCCCCCc--------------CC-CCCHHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 108 GNKSDLET--------------LR-AVPTEDAKEFAEK----------EGLCFMETSALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 108 ~nK~D~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
+||.|+-. -. .-..+++..+... ..+.++.+.|.+..+|+.+|..+.+.+.....
T Consensus 269 LNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 269 LNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred eecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 99999821 01 1233344333321 12446778999999999999999999988765
Q ss_pred hh
Q 040835 163 KK 164 (206)
Q Consensus 163 ~~ 164 (206)
+.
T Consensus 349 k~ 350 (354)
T KOG0082|consen 349 KD 350 (354)
T ss_pred HH
Confidence 54
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.58 E-value=2.2e-07 Score=65.26 Aligned_cols=89 Identities=12% Similarity=0.035 Sum_probs=56.5
Q ss_pred hHhcCCcEEEEEeeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccC
Q 040835 64 AYYRGAVGAMLVYDITKRQS--FDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSAL 141 (206)
Q Consensus 64 ~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 141 (206)
..+..+|++++|+|+.++.. ...+..+ +... ..++|+++|+||+|+..... .......+.+.+...++.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~~-~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEY---LKKE-KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHH---HHhc-cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEeecc
Confidence 34678999999999988632 2223333 2222 24589999999999853211 1111222222222235779999
Q ss_pred CCCCHHHHHHHHHHHH
Q 040835 142 ESTNVELAFLTVLTEI 157 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~i 157 (206)
.+.|++++++.+.+.+
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999887654
No 339
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.58 E-value=1.9e-06 Score=63.59 Aligned_cols=103 Identities=22% Similarity=0.167 Sum_probs=65.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA-------VTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~i 73 (206)
++|.|.+|||||+..++............+.+.....+.+++ ..+++.|.||.-+-.+ ......+.+|+++
T Consensus 67 lIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArtaDlil 144 (364)
T KOG1486|consen 67 LIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLIL 144 (364)
T ss_pred EecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecccEEE
Confidence 579999999999999988665444333334444444555544 4578999999543322 2234567899999
Q ss_pred EEeeCCChhhHH-HHHHHHHHHHhcCCCCCcEE
Q 040835 74 LVYDITKRQSFD-NVARWLEELRGHADKNIIIM 105 (206)
Q Consensus 74 ~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~i 105 (206)
.|.|++..+... .+..-+..+....+...|-+
T Consensus 145 MvLDatk~e~qr~~le~ELe~vGiRLNk~~Pni 177 (364)
T KOG1486|consen 145 MVLDATKSEDQREILEKELEAVGIRLNKRKPNI 177 (364)
T ss_pred EEecCCcchhHHHHHHHHHHHhceeccCCCCCe
Confidence 999999876544 33445555443333444533
No 340
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.3e-07 Score=75.06 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=73.5
Q ss_pred CCCCHHHHHHHHhcCCCCCC----------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcC
Q 040835 5 SAVGKSQLLARFARDEFSLD----------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68 (206)
Q Consensus 5 ~~~GKTtLl~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 68 (206)
-.+|||||-++.+...-... ....-|+++........|.+..+.|+||||+-.|.......++.
T Consensus 48 idsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrV 127 (721)
T KOG0465|consen 48 IDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRV 127 (721)
T ss_pred EecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhh
Confidence 35899999998775211000 01112445555555566778999999999999988878888899
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
-|++|++++...+-.-.....|.+.- ..++|.+.++||+|.
T Consensus 128 lDGaVlvl~aV~GVqsQt~tV~rQ~~----ry~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 128 LDGAVLVLDAVAGVESQTETVWRQMK----RYNVPRICFINKMDR 168 (721)
T ss_pred ccCeEEEEEcccceehhhHHHHHHHH----hcCCCeEEEEehhhh
Confidence 99999999887654334444554432 247999999999996
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.57 E-value=3.2e-07 Score=71.46 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=57.7
Q ss_pred EEEEEEEeCCCchhhhhh----hHhH--------hcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 44 NVKAQIWDTAGQERYRAV----TSAY--------YRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
.+.+.|+||||....... ...+ -...+..++|+|++... .+..+.. +.... -+.-+|+||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~----f~~~~---~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA----FHEAV---GLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH----HHhhC---CCCEEEEEC
Confidence 467899999995432111 1111 12467789999998543 2222222 22211 245688999
Q ss_pred CCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 111 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
.|... ..-.+.......++|+..++ +|++++++-.
T Consensus 269 lD~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 99643 23345666777799998888 7788876644
No 342
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.55 E-value=1.1e-06 Score=79.67 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=67.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC------ccccceeeEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQE--------RYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 66 (206)
|+|++|+|||||++.- +-.++... ....+.+.... .. -.-+..++||+|.. .....|..++
T Consensus 116 viG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-ww---f~~~avliDtaG~y~~~~~~~~~~~~~W~~fL 190 (1169)
T TIGR03348 116 VIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WW---FTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFL 190 (1169)
T ss_pred EECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eE---ecCCEEEEcCCCccccCCCcccccHHHHHHHH
Confidence 6899999999999874 44443221 01111111110 11 12345799999921 1222344333
Q ss_pred ---------cCCcEEEEEeeCCCh-----h----hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 67 ---------RGAVGAMLVYDITKR-----Q----SFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 67 ---------~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
+..+++|+++|+.+- + ....++..+.++....+...|+.|++||+|+.
T Consensus 191 ~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 191 GLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 458999999998642 1 12345666677777777899999999999975
No 343
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.9e-06 Score=71.57 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=54.4
Q ss_pred EEEEeCCCch---hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040835 47 AQIWDTAGQE---RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED 123 (206)
Q Consensus 47 ~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 123 (206)
+.++|.||.+ +...-...+...+|++|+|.++.+..+... +.++..... .+..+.|+.||.|.......-.++
T Consensus 208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448|consen 208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCCcEEEEechhhhhcccHHHHHH
Confidence 5688999943 444445667789999999999987655433 333333332 234577778888986532222333
Q ss_pred HHHHHHHcCC--------eEEEeccC
Q 040835 124 AKEFAEKEGL--------CFMETSAL 141 (206)
Q Consensus 124 ~~~~~~~~~~--------~~~~~Sa~ 141 (206)
+......+.. .+|++|++
T Consensus 284 V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 284 VLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred HHHHHHhcCcccHhhhcCeeEEEecc
Confidence 3333333321 37888865
No 344
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=6.2e-06 Score=56.95 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=75.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCC-Cc---------------------h--
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTA-GQ---------------------E-- 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~---------------------~-- 56 (206)
+.|+||||||||+.++.+.--...+.. ..+....+.-++...=|.|+|+. |. +
T Consensus 10 ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 10 ITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence 469999999999999886433222221 13344455556666777787776 31 0
Q ss_pred --hhhhhhHhHhcCCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC
Q 040835 57 --RYRAVTSAYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL 133 (206)
Q Consensus 57 --~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 133 (206)
......+..+..||++ ++|---+ .+.. +.+...+........|++..+.+.+..+ -+..+....++
T Consensus 87 e~i~~~al~rA~~~aDvI--IIDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P-------~v~~ik~~~~v 155 (179)
T COG1618 87 EEIAIPALRRALEEADVI--IIDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP-------LVQRIKKLGGV 155 (179)
T ss_pred HHHhHHHHHHHhhcCCEE--EEecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh-------HHHHhhhcCCE
Confidence 1112233445667844 4443222 1111 2344444444446788888887765321 12222232233
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHH
Q 040835 134 CFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 134 ~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
.+| .+.+|-+.++..++..+
T Consensus 156 ~v~----lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 156 YVF----LTPENRNRILNEILSVL 175 (179)
T ss_pred EEE----EccchhhHHHHHHHHHh
Confidence 343 55666667777776554
No 345
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=5.1e-07 Score=63.24 Aligned_cols=85 Identities=15% Similarity=0.009 Sum_probs=54.6
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.....+ .+.+..+....+..++.+||+++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754332 22221 1111246899999999998531110 01112233333567899999999999999
Q ss_pred HHHHHHHHH
Q 040835 150 FLTVLTEIY 158 (206)
Q Consensus 150 ~~~l~~~i~ 158 (206)
++.+.+...
T Consensus 77 ~~~i~~~~~ 85 (155)
T cd01849 77 ESAFTKQTN 85 (155)
T ss_pred HHHHHHHhH
Confidence 998877643
No 346
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.4e-07 Score=74.20 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=90.4
Q ss_pred cCCCCCHHHHHHHHhcC--------CCCCCCc--------cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 3 GDSAVGKSQLLARFARD--------EFSLDSK--------ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 3 G~~~~GKTtLl~~l~~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
..-.+||||.-.+++.- .+..... ..-|+++....+.++|+...+.++||||+-.|.-.....+
T Consensus 44 ahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~levercl 123 (753)
T KOG0464|consen 44 AHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCL 123 (753)
T ss_pred EEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHH
Confidence 34579999999998752 2221111 1146777778889999999999999999999988888999
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC 134 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 134 (206)
+--|+++.|||.+-.-....+..|.+ ....++|-..++||+|..... -...+...-++.++.
T Consensus 124 rvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an--fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 124 RVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN--FENAVDSIEEKLGAK 185 (753)
T ss_pred HHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh--hhhHHHHHHHHhCCc
Confidence 99999999999986654445555643 334678999999999974211 123345555566654
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.52 E-value=4.3e-07 Score=69.36 Aligned_cols=96 Identities=15% Similarity=0.048 Sum_probs=58.5
Q ss_pred EEEEEEEeCCCchhhhhhh----Hh---Hh-----cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 44 NVKAQIWDTAGQERYRAVT----SA---YY-----RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~----~~---~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
++.+.|+||||........ .. .. ...|.+++|+|++... +.+. ....+.+.. -+.-+|+||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC---CCCEEEEEcc
Confidence 4678999999965332211 11 11 2378899999997542 2222 122222211 2457889999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 112 DLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
|... ..-.+..+....++|+..++ +|++++++-.
T Consensus 228 De~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9754 33345666667789988887 7777776644
No 348
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.50 E-value=9.2e-08 Score=66.71 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=30.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
|+|+.|||||||+|.|++...... ......++.....+.++.. ..|+||||...+.
T Consensus 40 l~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 40 LLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp EECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred EECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 589999999999999998633221 1111122333333444332 3789999976654
No 349
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.48 E-value=1.8e-06 Score=67.37 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred EEEEEEeCCCchhhhhhhH--hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--
Q 040835 45 VKAQIWDTAGQERYRAVTS--AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP-- 120 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-- 120 (206)
.-+.++|+.|++.|...+. .+-...|..++++.+++..+- -.++.+-.+.. ...|++++++|+|+.++..+.
T Consensus 201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v 276 (527)
T COG5258 201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGV 276 (527)
T ss_pred cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHH
Confidence 3467999999999865433 345689999999999886542 11222221111 469999999999996422111
Q ss_pred HHHHHHHHH----------------------HcC---CeEEEeccCCCCCHHH
Q 040835 121 TEDAKEFAE----------------------KEG---LCFMETSALESTNVEL 148 (206)
Q Consensus 121 ~~~~~~~~~----------------------~~~---~~~~~~Sa~~~~~v~~ 148 (206)
.+++..+.+ +.+ +|+|.+|+.+++|++-
T Consensus 277 ~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl 329 (527)
T COG5258 277 VEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL 329 (527)
T ss_pred HHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH
Confidence 122222211 122 4899999999999873
No 350
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.48 E-value=6.5e-07 Score=63.77 Aligned_cols=94 Identities=17% Similarity=0.036 Sum_probs=62.0
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEE
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFM 136 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 136 (206)
+........+.++|++++|+|+.++..... ..+...+ .++|+++|+||+|+..... .....++.+..+..++
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi 79 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence 344455677899999999999987543211 1121111 2478999999999853211 1112223333456789
Q ss_pred EeccCCCCCHHHHHHHHHHHHH
Q 040835 137 ETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 137 ~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
.+|++++.|++++...+...+.
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 351
>PRK14974 cell division protein FtsY; Provisional
Probab=98.45 E-value=1e-06 Score=69.05 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=57.7
Q ss_pred EEEEEEeCCCchhhh----hhhHhHh--cCCcEEEEEeeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 45 VKAQIWDTAGQERYR----AVTSAYY--RGAVGAMLVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
..+.++||+|..... .....+. -..|.+++|+|++.... ...+.. +.... .+--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~---~~~giIlTKlD~~~-- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV---GIDGVILTKVDADA-- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC---CCCEEEEeeecCCC--
Confidence 568999999964321 1112222 25788899999876432 222222 22211 23568899999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 118 AVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
..-.+..++...++|+..++ +|++++++...
T Consensus 294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred --CccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 23344556666789988887 78888776543
No 352
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.45 E-value=2.1e-06 Score=69.15 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCchhhhhh----hHhH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRAV----TSAY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
.+.+.|+||+|....... ...+ ....+.+++|+|++-...... ....+... --+.-+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~---~~~~g~IlTKlD~~a-- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS---VDVGSVIITKLDGHA-- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc---cCCcEEEEECccCCC--
Confidence 467899999995432211 1111 224678999999875432221 22223221 135678899999753
Q ss_pred CCCHHHHHHHHHHcCCeEEEe
Q 040835 118 AVPTEDAKEFAEKEGLCFMET 138 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~ 138 (206)
..-.+.......+.|+..+
T Consensus 254 --rgG~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 254 --KGGGALSAVAATKSPIIFI 272 (429)
T ss_pred --CccHHhhhHHHHCCCeEEE
Confidence 2222344555556665444
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.44 E-value=4e-07 Score=69.81 Aligned_cols=51 Identities=25% Similarity=0.368 Sum_probs=36.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 55 (206)
|+|.||||||||+|+|.+......... .+.|.....+.+.. .+.++||||.
T Consensus 123 ~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 123 IVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC---CEEEEECCCc
Confidence 589999999999999998765444322 24555554444432 4789999996
No 354
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.43 E-value=8.7e-07 Score=69.84 Aligned_cols=79 Identities=18% Similarity=0.032 Sum_probs=51.5
Q ss_pred CccCCCCCHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCCchh-------
Q 040835 1 LIGDSAVGKSQLLARFARDEF-SLDSKATIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQER------- 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------- 57 (206)
++|.|++|||||++.|++... .....|..+.......+.+.+. ...+.+.|.||...
T Consensus 7 ivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~G 86 (368)
T TIGR00092 7 IVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEG 86 (368)
T ss_pred EECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccC
Confidence 589999999999999999876 4333333222222233333221 24578999999532
Q ss_pred hhhhhHhHhcCCcEEEEEeeCC
Q 040835 58 YRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
........++.+|++++|++..
T Consensus 87 lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 87 LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cchHHHHHHHhCCEEEEEEeCC
Confidence 2223345678999999999974
No 355
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.43 E-value=1e-06 Score=60.73 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=52.7
Q ss_pred hHhHhcCCcEEEEEeeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 62 TSAYYRGAVGAMLVYDITKRQSFD--NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 62 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
....+..+|++++|+|+.++.+.. .+..|+... . .++|+++++||+|+..+.. ..+..+..+..+..++.+|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345678899999999998875432 333443322 1 4689999999999853221 2233455556678899999
Q ss_pred cCCCCC
Q 040835 140 ALESTN 145 (206)
Q Consensus 140 a~~~~~ 145 (206)
|+++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 998764
No 356
>PRK13796 GTPase YqeH; Provisional
Probab=98.43 E-value=2.3e-06 Score=68.16 Aligned_cols=93 Identities=22% Similarity=0.299 Sum_probs=61.2
Q ss_pred hhhhhhhHhHhcCCc-EEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH----HHH
Q 040835 56 ERYRAVTSAYYRGAV-GAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF----AEK 130 (206)
Q Consensus 56 ~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~ 130 (206)
+.|....... ...+ .+++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+.. .....+++..+ ++.
T Consensus 57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHh
Confidence 3455544443 4445 899999998743 12333333332 2678999999999964 33333444333 455
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 040835 131 EGL---CFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 131 ~~~---~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
.++ .++.+||+++.|++++++.+.+.
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 565 58999999999999999998654
No 357
>PRK12288 GTPase RsgA; Reviewed
Probab=98.42 E-value=3.1e-07 Score=72.37 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=35.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc------ccceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA------TIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
|+|.+|||||||+|+|++......... .-.+|.....+.++.. ..++||||...+.
T Consensus 210 ~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 210 FVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 589999999999999998644322211 1122333333444332 2589999987755
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.41 E-value=6.7e-07 Score=68.97 Aligned_cols=51 Identities=27% Similarity=0.385 Sum_probs=36.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 55 (206)
|+|.||||||||+|+|.+........ ..+.|.....+..+ ..+.++||||.
T Consensus 126 ~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~---~~~~l~DtPGi 176 (287)
T PRK09563 126 IIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLG---KGLELLDTPGI 176 (287)
T ss_pred EECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeC---CcEEEEECCCc
Confidence 58999999999999999976643332 23555555444443 24789999996
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.41 E-value=3.6e-07 Score=71.46 Aligned_cols=51 Identities=24% Similarity=0.351 Sum_probs=40.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 55 (206)
|+|.||||||||||+|.+......+..+ |.|.....+.++.. +.++||||.
T Consensus 137 vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 137 VVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred EEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCc
Confidence 5899999999999999998875444333 77777777776544 799999995
No 360
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.39 E-value=3e-06 Score=65.06 Aligned_cols=101 Identities=18% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCch-hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc
Q 040835 53 AGQE-RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE 131 (206)
Q Consensus 53 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 131 (206)
||+- .........+..+|++++|+|+.++.+.... .+...+ .++|+++|+||+|+.+... .....+.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 5542 2334456778899999999999876432211 111111 2579999999999853111 11112223334
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 040835 132 GLCFMETSALESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 132 ~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~ 161 (206)
+.+++.+|++++.|++++.+.+.+.+....
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 667899999999999999998887765543
No 361
>PRK01889 GTPase RsgA; Reviewed
Probab=98.39 E-value=1.4e-06 Score=69.12 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=58.8
Q ss_pred hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEeccCCCC
Q 040835 66 YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-KEGLCFMETSALEST 144 (206)
Q Consensus 66 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 144 (206)
..++|.+++|+++........+.+++..+.. .+++.++|+||+|+.++. .+....+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 5789999999999754455566666666555 357788999999996521 111122221 347899999999999
Q ss_pred CHHHHHHHHH
Q 040835 145 NVELAFLTVL 154 (206)
Q Consensus 145 ~v~~~~~~l~ 154 (206)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888763
No 362
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.38 E-value=2.4e-07 Score=69.12 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=83.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc-ccceeeEEEEEEECCeEEEEEEEeCCC----------chhhhhhhHhHhcC-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA-TIGVEFQTKTLVIHHKNVKAQIWDTAG----------QERYRAVTSAYYRG- 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~- 68 (206)
++|..|+|||+|+|.++.......... ..+.+...... ..+..+.++|.|| ...+..+...|+.+
T Consensus 141 ~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f---~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR 217 (320)
T KOG2486|consen 141 FYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF---HVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLER 217 (320)
T ss_pred eecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee---eccceEEEEecCCcccccCCccCcchHhHhHHHHHHhh
Confidence 478999999999999988655433322 33333333222 2345688999999 22344445555432
Q ss_pred --CcEEEEEeeCCChhh-HH-HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-------CC----HHHHHHHHHHcCC
Q 040835 69 --AVGAMLVYDITKRQS-FD-NVARWLEELRGHADKNIIIMLVGNKSDLETLRA-------VP----TEDAKEFAEKEGL 133 (206)
Q Consensus 69 --~d~~i~v~d~~~~~s-~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------~~----~~~~~~~~~~~~~ 133 (206)
---+++++|++-+-. .+ ....|+ . ..++|+.+|.||||...... .. ......-......
T Consensus 218 ~nLv~~FLLvd~sv~i~~~D~~~i~~~---g---e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~ 291 (320)
T KOG2486|consen 218 ENLVRVFLLVDASVPIQPTDNPEIAWL---G---ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDL 291 (320)
T ss_pred hhhheeeeeeeccCCCCCCChHHHHHH---h---hcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccC
Confidence 223556667654321 11 112232 2 25799999999999742110 00 1111111112234
Q ss_pred eEEEeccCCCCCHHHHHHHHHH
Q 040835 134 CFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 134 ~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
|++.+|+.++.|++.++..+.+
T Consensus 292 Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 292 PWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred CceeeecccccCceeeeeehhh
Confidence 6778999999999987765543
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.38 E-value=6e-06 Score=61.37 Aligned_cols=81 Identities=15% Similarity=0.051 Sum_probs=48.0
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCCCccccceeeEEEEEEEC---CeEEEEEEEeCCCchhh------hhhhHhHhcC-
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLDSKATIGVEFQTKTLVIH---HKNVKAQIWDTAGQERY------RAVTSAYYRG- 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~G~~~~------~~~~~~~~~~- 68 (206)
|+|++++|||+|+|.|++. .+....... ..|...-..... +....+.++||+|.... .......+..
T Consensus 12 v~G~~~sGKS~llN~l~~~~~~f~~~~~~~-~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~l 90 (224)
T cd01851 12 VFGPQSSGKSFLLNHLFGTLSGFDVMDTSQ-QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATL 90 (224)
T ss_pred EECCCCCCHHHHHHHHhCCCCCeEecCCCC-CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHH
Confidence 6899999999999999998 554332211 112211111111 23577999999995432 2222223333
Q ss_pred -CcEEEEEeeCCChh
Q 040835 69 -AVGAMLVYDITKRQ 82 (206)
Q Consensus 69 -~d~~i~v~d~~~~~ 82 (206)
++.+||..+....+
T Consensus 91 lss~~i~n~~~~~~~ 105 (224)
T cd01851 91 LSSVLIYNSWETILG 105 (224)
T ss_pred HhCEEEEeccCcccH
Confidence 78888887766433
No 364
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.35 E-value=5.3e-07 Score=68.64 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=36.7
Q ss_pred CccCCCCCHHHHHHHHhcC------CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARD------EFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
++|..|||||||+|+|... .++......-.+|.....+.+++.. .|+||||...+.
T Consensus 169 l~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 169 LLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred EECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 5899999999999999974 2222222223344444455554333 689999987654
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=98.34 E-value=6e-07 Score=70.80 Aligned_cols=56 Identities=23% Similarity=0.228 Sum_probs=35.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccc------cceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKAT------IGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
|+|++|||||||+|+|++.......... -.+|.....+.++... .++||||...+.
T Consensus 177 ~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 177 VAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred EEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 6899999999999999976443222111 1133443444443322 699999986543
No 366
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.30 E-value=8.9e-07 Score=66.68 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=34.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
|+|++|||||||+|+|.+....... ....++|.....+.+.+ ..++||||...+.
T Consensus 125 ~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 125 FAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 5899999999999999986432211 11112333333344432 2799999986544
No 367
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.28 E-value=2.8e-06 Score=65.25 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=53.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC---------------CeEEEEEEEeCCCchh----hhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH---------------HKNVKAQIWDTAGQER----YRAV 61 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~G~~~----~~~~ 61 (206)
+||.|+||||||+|.|+.....+...|..+++-....+.+. .....+.++|++|.-. -..+
T Consensus 25 IVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL 104 (391)
T KOG1491|consen 25 IVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL 104 (391)
T ss_pred EeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence 68999999999999999988876666654444333333332 1235688999988322 1112
Q ss_pred ---hHhHhcCCcEEEEEeeCC
Q 040835 62 ---TSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 62 ---~~~~~~~~d~~i~v~d~~ 79 (206)
-...++.+|+++-|++..
T Consensus 105 GN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 105 GNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred hHHHHHhhhhccceeEEEEec
Confidence 233467899999888764
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=5e-06 Score=65.90 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=50.9
Q ss_pred EEEEEEEeCCCchhhhhhhH---hHhc---CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCC-----CCcEEEEEeCCC
Q 040835 44 NVKAQIWDTAGQERYRAVTS---AYYR---GAVGAMLVYDITKRQSFDNVARWLEELRGHADK-----NIIIMLVGNKSD 112 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~---~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~D 112 (206)
+..+.++||+|......... ..+. ..+-.++|++++... +.+...+..+...... .-+--+|+||.|
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlD 292 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLD 292 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccc
Confidence 45789999999654332211 1122 234568899987643 2222222223222100 013457889999
Q ss_pred CCcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 113 LETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
... ..-.+..+....++|+..++
T Consensus 293 Et~----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 293 EAS----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred cCC----CccHHHHHHHHHCcCeEEEe
Confidence 654 45567778888888876665
No 369
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=3.8e-07 Score=68.99 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=73.1
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP--TE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~ 122 (206)
.++.++|+||++-.......-..-.|++++++..+.........+.+..+..+. =+.++++-||+|+..+.+.. .+
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e 202 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHE 202 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHH
Confidence 457789999998655443333445688888887765332222222222222211 25688999999996533322 23
Q ss_pred HHHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 123 DAKEFAEKE---GLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 123 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
++..|.+.. +.|++.+||.-+.|++-+.+.++..+.-.
T Consensus 203 ~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 203 QIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred HHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 345555543 57999999999999999999999887543
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.27 E-value=5.8e-06 Score=58.06 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=35.9
Q ss_pred EEEEEEeCCCchhhhhhhHh--------HhcCCcEEEEEeeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 45 VKAQIWDTAGQERYRAVTSA--------YYRGAVGAMLVYDITKRQSF-DNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
....++|++|...-...... ..-..|.++.++|+.+-... .....+..++... -++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 45678999996432222221 22357889999998653321 1222333444332 2678999995
No 371
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.26 E-value=1.8e-05 Score=62.92 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=76.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC--------------ccccc----------eeeEEEEEEE-CCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS--------------KATIG----------VEFQTKTLVI-HHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~--------------~~~~~----------~~~~~~~~~~-~~~~~~~~i~D~~G~ 55 (206)
|+|+-.+|||||+.+|....+.|.- ....| ..-....+.+ ++..+.+.++||.|.
T Consensus 22 VVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDCVGy 101 (492)
T PF09547_consen 22 VVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDCVGY 101 (492)
T ss_pred eecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEeecce
Confidence 6899999999999999874222111 00011 1122233444 456788999999871
Q ss_pred h-------------hh-hhhh---------------HhHhc--CCcEEEEEeeCC--C--hhhHHHH-HHHHHHHHhcCC
Q 040835 56 E-------------RY-RAVT---------------SAYYR--GAVGAMLVYDIT--K--RQSFDNV-ARWLEELRGHAD 99 (206)
Q Consensus 56 ~-------------~~-~~~~---------------~~~~~--~~d~~i~v~d~~--~--~~s~~~~-~~~~~~~~~~~~ 99 (206)
- ++ .+-| +..+. ..-++++.-|-+ + ++.+..+ .+....+..
T Consensus 102 ~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~--- 178 (492)
T PF09547_consen 102 MVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKE--- 178 (492)
T ss_pred eecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHH---
Confidence 0 00 0001 11111 112333333332 1 4445444 334445544
Q ss_pred CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 040835 100 KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALE 142 (206)
Q Consensus 100 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 142 (206)
.++|+++++|-.+-.. .-..+...++..+++++++.+++..
T Consensus 179 igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 179 IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence 5799999999887432 2234556777888898888777543
No 372
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.7e-06 Score=71.40 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHhcCCCCCC--------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCc
Q 040835 5 SAVGKSQLLARFARDEFSLD--------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAV 70 (206)
Q Consensus 5 ~~~GKTtLl~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 70 (206)
-.=|||||...|....-... ...+-|++.....+..-..++.+.++|+||+-+|........+-+|
T Consensus 18 vdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d 97 (887)
T KOG0467|consen 18 VDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSD 97 (887)
T ss_pred ecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcC
Confidence 34699999999986432111 1122345555555555556788999999999999999999999999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
++++++|+..+-.........+.+. .+...++|+||+|.
T Consensus 98 ~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 98 GALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred CcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 9999999986532222222222222 24557889999994
No 373
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=8.8e-06 Score=62.11 Aligned_cols=92 Identities=16% Similarity=0.077 Sum_probs=67.2
Q ss_pred hhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
+.+.-..+.|-+++|+.+.+++ +...+.+++-.... .++..+|++||+|+..+......+.......+|++++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 3344455677788888888876 56666776665554 3566778899999976444333456777788899999999
Q ss_pred cCCCCCHHHHHHHHHH
Q 040835 140 ALESTNVELAFLTVLT 155 (206)
Q Consensus 140 a~~~~~v~~~~~~l~~ 155 (206)
++++.++.++...+..
T Consensus 149 ~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 149 AKNGDGLEELAELLAG 164 (301)
T ss_pred CcCcccHHHHHHHhcC
Confidence 9999999987776643
No 374
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.25 E-value=1e-05 Score=65.12 Aligned_cols=115 Identities=20% Similarity=0.207 Sum_probs=78.2
Q ss_pred eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh----------hHHHHHHHHHHHHhc-CCCCCcEEEEEeCC
Q 040835 43 KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ----------SFDNVARWLEELRGH-ADKNIIIMLVGNKS 111 (206)
Q Consensus 43 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~ 111 (206)
....+.++|.+|+...+..|..++.+++++|||+++++.. .+.+...++..+... .-.+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 4578899999999999999999999999999999986522 122222333333222 22579999999999
Q ss_pred CCC------cC------C------CCCHHHHHHHHHH------------cCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 112 DLE------TL------R------AVPTEDAKEFAEK------------EGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 112 D~~------~~------~------~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
|+- .. . .-+.+.+..+... ..+.++.|+|.+..++..+|..+.+.|
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 962 10 0 1234455555442 112467899999999999999887754
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.23 E-value=1.2e-05 Score=57.31 Aligned_cols=84 Identities=18% Similarity=0.069 Sum_probs=48.2
Q ss_pred EEEEEEEeCCCchhh----hhhhHhHh--cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERY----RAVTSAYY--RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
...+.++|++|...+ ......+. ...+.+++|+|...... ...+...+.... + ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~-- 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDA-- 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCC--
Confidence 345788999996422 11112222 24899999999875432 222333333222 2 3567789999753
Q ss_pred CCCHHHHHHHHHHcCCeEEE
Q 040835 118 AVPTEDAKEFAEKEGLCFME 137 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~ 137 (206)
....+...+...++|+..
T Consensus 154 --~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 --RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred --CcchhhhhHHHHCcCeEe
Confidence 333344577777777643
No 376
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.4e-05 Score=65.44 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=74.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|+||+|||||++.|.............| . .+ .+.+....+.+.++|.. ... .....+-+|++++++|.+-
T Consensus 74 vvGPpGtGKsTLirSlVrr~tk~ti~~i~G-P---iT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlLlIdgnf 145 (1077)
T COG5192 74 VVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-P---IT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLLLIDGNF 145 (1077)
T ss_pred eecCCCCChhHHHHHHHHHHHHhhhhccCC-c---eE-EeecceeEEEEEeChHH--HHH-HHhHHHhhheeEEEecccc
Confidence 689999999999999876432211111111 1 11 13467788999999932 221 2344567999999999875
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCCHHHHH----HHHHH-c-CCeEEEeccCC
Q 040835 81 RQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAVPTEDAK----EFAEK-E-GLCFMETSALE 142 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~----~~~~~-~-~~~~~~~Sa~~ 142 (206)
.--.+.+. ++..+.. .+.| ++-|++..|+-.........-. .+..+ + |+.+|.+|...
T Consensus 146 GfEMETmE-FLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 146 GFEMETME-FLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred CceehHHH-HHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 43222222 3333333 3455 6678999998542221111111 22222 2 67888887543
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.22 E-value=1.4e-05 Score=61.65 Aligned_cols=101 Identities=19% Similarity=0.151 Sum_probs=65.6
Q ss_pred CCCch-hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040835 52 TAGQE-RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK 130 (206)
Q Consensus 52 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 130 (206)
.||+- .-.......+..+|++++|+|+.++.+... .++..+. .++|+++|+||+|+.+... .+....+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 46653 223345667889999999999977643221 1111111 1589999999999853111 1122222334
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 131 EGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 131 ~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
.+.+++.+|++++.|++++...+...+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999999888776544
No 378
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=1e-05 Score=58.87 Aligned_cols=84 Identities=19% Similarity=0.108 Sum_probs=49.8
Q ss_pred EEEEEEeCCCchhhhhh----hHhHh--cCCcEEEEEeeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 45 VKAQIWDTAGQERYRAV----TSAYY--RGAVGAMLVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
..+.++||+|....... ...++ ...+-+++|++++.... +..+..++..+ -+--+|+||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------GIDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------STCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------cCceEEEEeecCCC--
Confidence 56899999995433221 11111 15677899999886542 22222222211 12357799999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 040835 118 AVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~S 139 (206)
..-.+..+....+.|+-.++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE
T ss_pred --CcccceeHHHHhCCCeEEEE
Confidence 45567788888899876665
No 379
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=1.7e-05 Score=70.70 Aligned_cols=114 Identities=25% Similarity=0.232 Sum_probs=66.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCc--------hhhhhhhHhH------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQ--------ERYRAVTSAY------ 65 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~--------~~~~~~~~~~------ 65 (206)
|+|++|+||||++.. .+..|+....-.-.......+-+++ +-.-+..++||.|. +.-...|..+
T Consensus 130 viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk 208 (1188)
T COG3523 130 VIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK 208 (1188)
T ss_pred EecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence 689999999998864 4444432211000000000011122 23345789999982 1222334332
Q ss_pred ---hcCCcEEEEEeeCCCh------hh---HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 66 ---YRGAVGAMLVYDITKR------QS---FDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 66 ---~~~~d~~i~v~d~~~~------~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
.+..|++|+.+|+.+- +. ...++.-+.++........|+++++||.|+..
T Consensus 209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3568999999998652 11 22344456666666667899999999999853
No 380
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.1e-05 Score=58.13 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=93.0
Q ss_pred CccCCCC--CHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEE----EEEEEeCCCchhhhhhhHhHhcCCcEEEE
Q 040835 1 LIGDSAV--GKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNV----KAQIWDTAGQERYRAVTSAYYRGAVGAML 74 (206)
Q Consensus 1 v~G~~~~--GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 74 (206)
|+|..|+ ||-+|+.+|....+.........+.++. .+++.+.+ .+.|.-.. .+.+. ..........++++
T Consensus 9 v~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcishic-de~~l-pn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 9 VTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISHIC-DEKFL-PNAEIAEPLQAFVM 84 (418)
T ss_pred EecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeeccc-chhcc-CCcccccceeeEEE
Confidence 5688888 9999999999888866654443333222 22333222 22222111 11111 11222344678999
Q ss_pred EeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc---------------------------CC----------
Q 040835 75 VYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET---------------------------LR---------- 117 (206)
Q Consensus 75 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---------------------------~~---------- 117 (206)
+||.+....+..+..|+....... --.++.|+||.|..+ +.
T Consensus 85 vfdlse~s~l~alqdwl~htdins--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEeccchhhhHHHHhhcccccccc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 999999999999999976432211 123567899999632 00
Q ss_pred -------CCCHHHHHHHHHHcCCeEEEeccCC------------CCCHHHHHHHHHHHHHHHhh
Q 040835 118 -------AVPTEDAKEFAEKEGLCFMETSALE------------STNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 118 -------~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~v~~~~~~l~~~i~~~~~ 162 (206)
-.......+|+.++|+.+++.++.+ ..||..+|..+-.++..-.-
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmi 226 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMI 226 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccce
Confidence 0112234567778889999887732 35788888888777655433
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=2.3e-06 Score=68.12 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=35.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC----CCccccceeeEEEEEEECCeEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL----DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 56 (206)
|+|.+|||||||+|+|+...... ...+..|+|.....+.++.. ..++||||..
T Consensus 165 vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 165 VVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred EEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 58999999999999999643111 11222355665555555432 3799999963
No 382
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=7.7e-06 Score=63.78 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=61.3
Q ss_pred EEEEEeCCCchhhhhhhHhHhc--CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----
Q 040835 46 KAQIWDTAGQERYRAVTSAYYR--GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV---- 119 (206)
Q Consensus 46 ~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---- 119 (206)
-+.++|.+|+..|......-+. -.|..++|++++..-... .++.+..+.. .++|++++++|+|+.....+
T Consensus 250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAA---LNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHH---hCCCeEEEEEeeccccchhHHHHH
Confidence 4789999999988765544333 357788888887653321 1222222222 47999999999998642211
Q ss_pred --------------------CHHHHHHHHHHc----CCeEEEeccCCCCCHH
Q 040835 120 --------------------PTEDAKEFAEKE----GLCFMETSALESTNVE 147 (206)
Q Consensus 120 --------------------~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~ 147 (206)
..+++...+++. -.|+|.+|+.+|+|++
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ 377 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR 377 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence 122222222222 2479999999999987
No 383
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.11 E-value=1.7e-05 Score=58.89 Aligned_cols=79 Identities=25% Similarity=0.232 Sum_probs=48.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------AVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d~~i 73 (206)
++|-|.+|||||+..+.+......+... .+.....-.+....-++++.|.||.-+-. .......+.++.++
T Consensus 64 ~vgFPSvGksTl~~~l~g~~s~vasyef--ttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~ 141 (358)
T KOG1487|consen 64 FVGFPSVGKSTLLSKLTGTFSEVAAYEF--TTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIF 141 (358)
T ss_pred EEecCccchhhhhhhhcCCCCccccccc--eeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEE
Confidence 5799999999999999886553332222 22222222222334568999999954321 12234456788888
Q ss_pred EEeeCCCh
Q 040835 74 LVYDITKR 81 (206)
Q Consensus 74 ~v~d~~~~ 81 (206)
+|.|+..+
T Consensus 142 ~vld~~kp 149 (358)
T KOG1487|consen 142 IVLDVLKP 149 (358)
T ss_pred EEeeccCc
Confidence 88887653
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=1.9e-05 Score=63.65 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=54.4
Q ss_pred EEEEEEeCCCchhhh----hhhHhHhc--CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYR----AVTSAYYR--GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~----~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
..+.++||+|..... .....+.. ...-.++|+|++-.. ..+..+...+... -+--+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~----~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH----GIHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence 457899999954322 22222221 234578888988432 2333333333221 23457899999654
Q ss_pred CCHHHHHHHHHHcCCeEEEeccCCCCCH-HHHH
Q 040835 119 VPTEDAKEFAEKEGLCFMETSALESTNV-ELAF 150 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~~ 150 (206)
..-.+..+....++|+..++ +|.+| +++.
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~ 370 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT--NGQKVPEDLH 370 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE--CCCCchhhhh
Confidence 45567788888888877665 45666 3443
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.10 E-value=4.9e-06 Score=66.20 Aligned_cols=53 Identities=19% Similarity=0.393 Sum_probs=34.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCC----CCCccccceeeEEEEEEECCeEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFS----LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 56 (206)
|+|.+|||||||+|+|+..... .......++|.....+.++. .+.++||||..
T Consensus 159 ~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred EECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 5899999999999999985321 11122234555544444422 25799999964
No 386
>PRK00098 GTPase RsgA; Reviewed
Probab=98.09 E-value=4.9e-06 Score=64.53 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=33.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccc------cceeeEEEEEEECCeEEEEEEEeCCCchhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKAT------IGVEFQTKTLVIHHKNVKAQIWDTAGQERY 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 58 (206)
|+|++|||||||+|.|++.......... ..++.....+.++.. ..++||||...+
T Consensus 169 ~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 169 LAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred EECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 5899999999999999986543222111 112333333333322 378999997643
No 387
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.07 E-value=2e-05 Score=54.69 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=37.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSD 112 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 112 (206)
.+.+.|+||+|..... ..++..+|.+|++..+.-.+.+..++- ..+. .--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~------~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIKA--GIME------IADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhhh--hHhh------hcCEEEEeCCC
Confidence 4678999999865322 348889999999988874444433332 1122 12378899987
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=5.8e-05 Score=62.25 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=52.2
Q ss_pred EEEEEEEeCCCchhhhhhhH----hH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRAVTS----AY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~----~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
...+.|+||+|......... .+ .. ....++|++.+.. ...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~-- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG-- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc--
Confidence 46789999999543222111 11 11 2235667776632 3333344333333 135678999999743
Q ss_pred CCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 040835 118 AVPTEDAKEFAEKEGLCFMETSALESTNV 146 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 146 (206)
..-.+..+....++++..++ +|..|
T Consensus 499 --~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 --RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred --chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 45667777788888877665 44555
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.03 E-value=6.5e-06 Score=63.49 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=34.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc------ccceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA------TIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
++|++|+|||||+|.|++......... ..+++.....+.+... ..++||||...+.
T Consensus 166 ~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 166 LVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred EECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 589999999999999998654322211 1112333333333322 2689999987653
No 390
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.03 E-value=6.6e-05 Score=61.01 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=53.6
Q ss_pred EEEEEEEeCCCchhhh----hhhHhHhc---CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040835 44 NVKAQIWDTAGQERYR----AVTSAYYR---GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETL 116 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 116 (206)
...+.|+||+|..... .....++. .-.-+++|++.+-. ...+......+... + +--+|+||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence 3578999999964332 12233333 23356777888643 23333333333321 1 2368899999643
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 040835 117 RAVPTEDAKEFAEKEGLCFMETSALESTNV 146 (206)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 146 (206)
..-.+..+....++|+..++ +|.+|
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 44467888888899977665 45554
No 391
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=1.7e-05 Score=59.51 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=37.6
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCCCccc----cceeeEEEEEEECCeEEEEEEEeCCC
Q 040835 2 IGDSAVGKSQLLARFARDEFSLDSKAT----IGVEFQTKTLVIHHKNVKAQIWDTAG 54 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G 54 (206)
+|.+|.|||||++.|++..+.....+. +......+...-.+..+.+.|+||.|
T Consensus 48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 799999999999999998886554332 33333333333346678899999998
No 392
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.96 E-value=4.5e-05 Score=61.94 Aligned_cols=85 Identities=18% Similarity=0.034 Sum_probs=49.1
Q ss_pred EEEEEEeCCCchhhhhh----hHh--HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYRAV----TSA--YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
..+.|+||+|....... ... ....+|.+++|+|++... ........+.... ...-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC---
Confidence 37899999996543221 111 133578899999987643 1112222233211 12467889999643
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 040835 119 VPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~S 139 (206)
..-.+..+....+.|+.+++
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEe
Confidence 23345666677777766554
No 393
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.96 E-value=2.9e-05 Score=53.32 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=60.4
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh
Q 040835 3 GDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ 82 (206)
Q Consensus 3 G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 82 (206)
|..|+|||++.-.+...-.. ......-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+- .
T Consensus 7 ~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~ 79 (139)
T cd02038 7 GKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-T 79 (139)
T ss_pred CCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-h
Confidence 67899999997776543211 110000000000 000112678999999753 3334577899999999998863 3
Q ss_pred hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 83 SFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 83 s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
++......+..+.... ...++.+++|+.+..
T Consensus 80 s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 80 SITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 4444444444444332 345678999999743
No 394
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.96 E-value=0.00012 Score=57.21 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=47.7
Q ss_pred EEEEEEeCCCchhhhhhhHhHhc--------CCcEEEEEeeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYR--------GAVGAMLVYDITKRQSF-DNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
....++++.|...-..+...++. ..+.+|.|+|+.+-... ........++... =+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678888886544443333321 24779999998753321 1111122233322 378899999875
Q ss_pred CCCCCHHHHHHHHHHc--CCeEEEec
Q 040835 116 LRAVPTEDAKEFAEKE--GLCFMETS 139 (206)
Q Consensus 116 ~~~~~~~~~~~~~~~~--~~~~~~~S 139 (206)
. .+.++...+.+ .++++.++
T Consensus 165 ~----~~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 E----AEKLRERLARINARAPVYTVV 186 (318)
T ss_pred H----HHHHHHHHHHhCCCCEEEEec
Confidence 2 24556666555 35676654
No 395
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.95 E-value=0.00054 Score=56.32 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=54.5
Q ss_pred EEEEEeCCCc-------------hhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCC
Q 040835 46 KAQIWDTAGQ-------------ERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWL-EELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 46 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~ 111 (206)
...++|.||. +....+...++.+.+++|+|+--.. .+..+... +.+......+...|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 3678999992 2334566788999999999985332 12222222 22333334677899999999
Q ss_pred CCCcCCCCCHHHHHHHHHH
Q 040835 112 DLETLRAVPTEDAKEFAEK 130 (206)
Q Consensus 112 D~~~~~~~~~~~~~~~~~~ 130 (206)
|+......+...+..+...
T Consensus 490 DlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhccCCHHHHHHHHhc
Confidence 9987656677777777664
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=97.94 E-value=6.5e-05 Score=60.95 Aligned_cols=87 Identities=16% Similarity=0.064 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCchhhhh----hhHhH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
.+.+.|+||+|...... ....+ .-..+.+++|+|..... .+......+.... + ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~-- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDA-- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc--
Confidence 35689999999432211 11111 12467789999987543 2222223333211 1 2457789999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEecc
Q 040835 118 AVPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
..-.+.......++|+.++..
T Consensus 255 --rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 222366777777888766543
No 397
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.93 E-value=3e-05 Score=56.74 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=80.1
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh----------hHHHHHHHHHHHHhcC-CCCCcEEEEEeC
Q 040835 42 HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ----------SFDNVARWLEELRGHA-DKNIIIMLVGNK 110 (206)
Q Consensus 42 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~p~ivv~nK 110 (206)
-..+.+.+.|.+|+..-...|...+.++-.+++++.++..+ ..+.-+.++..+..+. -.+.++++++||
T Consensus 196 l~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 196 LQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEech
Confidence 34456789999999888888888888888777776665422 2233333333333332 267899999999
Q ss_pred CCCCcC----------------CCCCHHHHHHHHHHc----C------CeEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 111 SDLETL----------------RAVPTEDAKEFAEKE----G------LCFMETSALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 111 ~D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
-|+..+ ...+.+.++++.-+. + +.-+.+.|.+.+||.-+|..+-+.+++...
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 998421 222334455554432 2 123567888999999999999999887644
No 398
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.93 E-value=5.6e-06 Score=59.60 Aligned_cols=71 Identities=20% Similarity=0.141 Sum_probs=38.3
Q ss_pred EEEEEEeCCCchhhhh---hhHhH---hcC---CcEEEEEeeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 45 VKAQIWDTAGQERYRA---VTSAY---YRG---AVGAMLVYDITK-RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~---~~~~~---~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
-.+.++|+||+.+... ..+.+ +.+ --.+++++|..= -++...+.-.+..+.......+|-|-|++|+|+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 3478999999754322 11222 121 123455655431 1122333333444444444679999999999985
Q ss_pred c
Q 040835 115 T 115 (206)
Q Consensus 115 ~ 115 (206)
.
T Consensus 178 k 178 (273)
T KOG1534|consen 178 K 178 (273)
T ss_pred h
Confidence 3
No 399
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00015 Score=62.49 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=59.0
Q ss_pred EEEEEEeCCCchhhh----hhhHhHh--cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYR----AVTSAYY--RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
..+.|+||+|..... .....+. ...+-+++|+|.+.. .+.+.+....+...... -+-=+|+||.|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~-~i~glIlTKLDEt~--- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE-DVDGCIITKLDEAT--- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC-CCCEEEEeccCCCC---
Confidence 468999999943221 1111211 234567889998743 23333333333322111 13457899999654
Q ss_pred CCHHHHHHHHHHcCCeEEEeccCCCCCH-HHHHH----HHHHHHHH
Q 040835 119 VPTEDAKEFAEKEGLCFMETSALESTNV-ELAFL----TVLTEIYR 159 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~~~----~l~~~i~~ 159 (206)
..-.+..+....++|+..++ +|++| +++.. .+++.++.
T Consensus 338 -~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 338 -HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred -CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 44456777888888877665 45666 44433 34444443
No 400
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.91 E-value=0.00012 Score=58.23 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=73.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccc---eeeEEE---------------EEE--E----------CCeEEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIG---VEFQTK---------------TLV--I----------HHKNVKAQIW 50 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~---~~~~~~---------------~~~--~----------~~~~~~~~i~ 50 (206)
+||++||||||.+-+|............++ ++.+.. .+. . .-.+..+.++
T Consensus 208 LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILV 287 (407)
T COG1419 208 LVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDVILV 287 (407)
T ss_pred EECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCEEEE
Confidence 589999999999999887544111111111 111110 000 0 0223568999
Q ss_pred eCCCchhhhhh----hHhHhcCC--cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040835 51 DTAGQERYRAV----TSAYYRGA--VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124 (206)
Q Consensus 51 D~~G~~~~~~~----~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 124 (206)
||.|...++.. ...++..+ .-+.+|++++-. ..++...+..+.... .--+|+||.|... ..-.+
T Consensus 288 DTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET~----s~G~~ 357 (407)
T COG1419 288 DTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDETT----SLGNL 357 (407)
T ss_pred eCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEcccccC----chhHH
Confidence 99996654332 33343322 335567777643 355565555554321 1246789999643 56667
Q ss_pred HHHHHHcCCeEEEec
Q 040835 125 KEFAEKEGLCFMETS 139 (206)
Q Consensus 125 ~~~~~~~~~~~~~~S 139 (206)
..+..+.+.|+-.++
T Consensus 358 ~s~~~e~~~PV~YvT 372 (407)
T COG1419 358 FSLMYETRLPVSYVT 372 (407)
T ss_pred HHHHHHhCCCeEEEe
Confidence 778888887765554
No 401
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.91 E-value=9.2e-05 Score=55.23 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=77.3
Q ss_pred eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh-------hHHHHHH---HHHHHHhcC-CCCCcEEEEEeCC
Q 040835 43 KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ-------SFDNVAR---WLEELRGHA-DKNIIIMLVGNKS 111 (206)
Q Consensus 43 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~---~~~~~~~~~-~~~~p~ivv~nK~ 111 (206)
..+.|+.+|.+|+......|...+.++.++|+|+..+... +...+.+ ++..+.... -....+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3567999999999999999999999999999998876521 1222222 222222222 1356789999999
Q ss_pred CCCcC----------------------------CCCCHH--HHHHHHHH-------------cCCeEEEeccCCCCCHHH
Q 040835 112 DLETL----------------------------RAVPTE--DAKEFAEK-------------EGLCFMETSALESTNVEL 148 (206)
Q Consensus 112 D~~~~----------------------------~~~~~~--~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~ 148 (206)
|+..+ ...+.. .+..+.+. +-+.+++|.|.+.++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 97310 000110 01111111 113467788999999999
Q ss_pred HHHHHHHHHHHHhh
Q 040835 149 AFLTVLTEIYRIVS 162 (206)
Q Consensus 149 ~~~~l~~~i~~~~~ 162 (206)
+|+...+.|.+..-
T Consensus 360 VFnDcrdiIqr~hl 373 (379)
T KOG0099|consen 360 VFNDCRDIIQRMHL 373 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876644
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.89 E-value=2.5e-05 Score=63.95 Aligned_cols=94 Identities=19% Similarity=0.159 Sum_probs=52.9
Q ss_pred EEEEEEeCCCchhhhh---hhHhHhcC---CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYRA---VTSAYYRG---AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
..+.++||+|...... .....+.. ..-.++|+|.+-.. ..+.+....+.. ....-+|+||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~--- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA--- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc---
Confidence 4578999999433221 11112222 22367888887432 223332222222 123457789999643
Q ss_pred CCHHHHHHHHHHcCCeEEEeccCCCCCH-HHHH
Q 040835 119 VPTEDAKEFAEKEGLCFMETSALESTNV-ELAF 150 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~~ 150 (206)
..-.+..+...+++|+..++ +|++| +++.
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence 45567788888898877665 56666 4443
No 403
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.88 E-value=0.00032 Score=54.87 Aligned_cols=88 Identities=19% Similarity=0.096 Sum_probs=51.1
Q ss_pred EEEEEEeCCCchhhhhhhHhHh--------cCCcEEEEEeeCCChhhHHH-H-HHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 45 VKAQIWDTAGQERYRAVTSAYY--------RGAVGAMLVYDITKRQSFDN-V-ARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
....++++.|...-......++ -..|++|-|+|+.+-..... + .....++... =+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 4467788888543322222221 23577899999876443222 2 2233333332 37899999997
Q ss_pred cCCCCCHHHHHHHHHHcC--CeEEEecc
Q 040835 115 TLRAVPTEDAKEFAEKEG--LCFMETSA 140 (206)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa 140 (206)
.... .+..+...++.+ ++++.++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 6332 455566666664 67888876
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=5.4e-05 Score=60.30 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=50.6
Q ss_pred EEEEEEeCCCchhhhh----hhHhHh--cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
..+.|+||+|...... ....++ ...+.+++|+|++-.. ..+......+... -.--+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence 5789999999643211 122222 2356788889876332 2333343444331 23457899999754
Q ss_pred CCHHHHHHHHHHcCCeEEEec
Q 040835 119 VPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~S 139 (206)
..-.+..++...++|+..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 44456777888888876655
No 405
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.85 E-value=5e-05 Score=59.43 Aligned_cols=104 Identities=17% Similarity=0.118 Sum_probs=59.0
Q ss_pred EEEEEEeCCCchhhhhhhH--hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040835 45 VKAQIWDTAGQERYRAVTS--AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 122 (206)
..+.++|.+|++.|...+- ..-+..|...+++-++-.- +.-.++.+.... ...+|+++|++|+|+-+ ..+..+
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL---aL~VPVfvVVTKIDMCP-ANiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL---ALHVPVFVVVTKIDMCP-ANILQE 293 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh---hhcCcEEEEEEeeccCc-HHHHHH
Confidence 3478999999999865432 2234467677777665321 011112111111 24799999999999853 122222
Q ss_pred HHHHHHH-----------------------------HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 123 DAKEFAE-----------------------------KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 123 ~~~~~~~-----------------------------~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
.+..+.+ +.-+|+|.+|-.+|+|+. ++...+
T Consensus 294 tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFL 353 (641)
T KOG0463|consen 294 TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFL 353 (641)
T ss_pred HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHH
Confidence 2222211 122478999999999986 333333
No 406
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.83 E-value=0.00013 Score=41.32 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=30.9
Q ss_pred HhcCCcEEEEEeeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040835 65 YYRGAVGAMLVYDITKRQ--SFDNVARWLEELRGHADKNIIIMLVGNKSD 112 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 112 (206)
.-.-.++++|++|++... +++....++..++..- .++|+++|.||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 345678999999998754 5666667777777665 4799999999998
No 407
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.82 E-value=0.00015 Score=58.85 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCchhhhh----hhHhH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRA----VTSAY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
.+.+.|+||+|...... ....+ .-..+.+++|+|++... ....+...+.... ...-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~-- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDA-- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcc--
Confidence 35689999999532211 11111 23467889999987543 2223333333222 12467799999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEecc
Q 040835 118 AVPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
..-.+..+....++|+.++..
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 223367777778888766543
No 408
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.79 E-value=2e-05 Score=63.76 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 56 (206)
+||-|||||||+||+|.+.+....+. |.|-|.+..++.+. -.+.+.||||.-
T Consensus 319 ~VGYPNVGKSSTINaLvG~KkVsVS~-TPGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 319 FVGYPNVGKSSTINALVGRKKVSVSS-TPGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred eecCCCCchhHHHHHHhcCceeeeec-CCCCcceeEEEEcC---CCceecCCCCcc
Confidence 58999999999999999987755543 33566655555543 346899999953
No 409
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=6.4e-05 Score=59.58 Aligned_cols=92 Identities=18% Similarity=0.141 Sum_probs=52.7
Q ss_pred EEEEEEEeCCCchhhhh----hhHhHhc--CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRA----VTSAYYR--GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
...+.|+||+|...... ....+.. ..+.+++|++++.. ..++...+..+.. --+--+|+||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~----l~i~glI~TKLDET~-- 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAE----IPIDGFIITKMDETT-- 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCc----CCCCEEEEEcccCCC--
Confidence 36789999999643222 1222222 34666777776422 2333333332221 123467799999753
Q ss_pred CCCHHHHHHHHHHcCCeEEEeccCCCCCHH
Q 040835 118 AVPTEDAKEFAEKEGLCFMETSALESTNVE 147 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 147 (206)
..-.+..++...++|+..++ +|++|.
T Consensus 357 --~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 --RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred --CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 45567788888898877665 344444
No 410
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.75 E-value=0.00018 Score=46.91 Aligned_cols=99 Identities=23% Similarity=0.144 Sum_probs=57.7
Q ss_pred cCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh
Q 040835 3 GDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ 82 (206)
Q Consensus 3 G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 82 (206)
+..|+||||+.-.|...-.......+.-.+. .... .-.+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~-----d~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDL-----DLQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC-----CCCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 4679999998776654322110111100000 0001 117899999986433 2445778899999888765 34
Q ss_pred hHHHHHHHHHHHHhcCCC-CCcEEEEEeC
Q 040835 83 SFDNVARWLEELRGHADK-NIIIMLVGNK 110 (206)
Q Consensus 83 s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 110 (206)
++..+..++..+...... ...+.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 566667777666665433 4567777775
No 411
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=7.4e-05 Score=60.02 Aligned_cols=86 Identities=19% Similarity=0.132 Sum_probs=49.8
Q ss_pred EEEEEEEeCCCchhh----hhhhHhHhc-----CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 44 NVKAQIWDTAGQERY----RAVTSAYYR-----GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~----~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
...+.++||+|.... ...+..++. ...-.++|+|++-.. ..+......+... -+--+|+||.|-.
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt 372 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEA 372 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCC
Confidence 457899999995421 111222222 233578899987653 2333333333221 2345789999965
Q ss_pred cCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 115 TLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
. ..-.+..+....++|+..++
T Consensus 373 ~----~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 373 D----FLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred C----CccHHHHHHHHHCCCEEEEe
Confidence 3 34456777778888876665
No 412
>PRK13695 putative NTPase; Provisional
Probab=97.73 E-value=0.00055 Score=48.81 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=42.9
Q ss_pred hHhcCCcEEEEEeeC---CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEecc
Q 040835 64 AYYRGAVGAMLVYDI---TKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 64 ~~~~~~d~~i~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
..+..+++ +++|- .+..+ ..+...+......+.|++++.+|... ......+....+..++++
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~-- 156 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL-- 156 (174)
T ss_pred hccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE--
Confidence 34456675 57773 22222 22233333333356899999987532 223344555556677777
Q ss_pred CCCCCHHHHHHHHHHHH
Q 040835 141 LESTNVELAFLTVLTEI 157 (206)
Q Consensus 141 ~~~~~v~~~~~~l~~~i 157 (206)
+.+|-+++.+.+++.+
T Consensus 157 -~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 -TPENRDSLPFEILNRL 172 (174)
T ss_pred -cchhhhhHHHHHHHHH
Confidence 4556667777777644
No 413
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00069 Score=54.34 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCchhhhh----hhHhHhcCC--c-EEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040835 44 NVKAQIWDTAGQERYRA----VTSAYYRGA--V-GAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETL 116 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 116 (206)
...+.++||+|...... ....++... + -.++|+|++.. ...+...+..+... -+--+|+||.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC-
Confidence 46789999999543221 122233322 2 57899999865 23344443333221 23467899999653
Q ss_pred CCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 040835 117 RAVPTEDAKEFAEKEGLCFMETSALESTNV 146 (206)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 146 (206)
..-.+..+....++|+..++ +|++|
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 44556777778888876554 45556
No 414
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.69 E-value=0.00011 Score=52.74 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=41.7
Q ss_pred EEEEEEeCCCchhhhhh---hH--hHhcCCcEEEEEeeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYRAV---TS--AYYRGAVGAMLVYDITKRQSFDNVAR-WLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
....++++.|...-..+ .. ...-..+.+|.|+|+.+-........ +..++... =++++||+|+....
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A------DvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA------DVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc------CEEEEeccccCChh-
Confidence 45678888884433322 01 11234678999999976432333322 33333322 37889999986522
Q ss_pred CCHHHHHHHHHHc
Q 040835 119 VPTEDAKEFAEKE 131 (206)
Q Consensus 119 ~~~~~~~~~~~~~ 131 (206)
...+..++..++.
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 1224555555554
No 415
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.63 E-value=0.00023 Score=50.48 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=61.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeC-CCc----------------------hh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDT-AGQ----------------------ER 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~----------------------~~ 57 (206)
+.|++|+|||||+++++..-.... .+..| +....+.-++...-|.+.|. .|. +.
T Consensus 4 iTG~pG~GKTTll~k~i~~l~~~~-~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIEELKKKG-LPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EES-TTSSHHHHHHHHHHHHHHTC-GGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred EECcCCCCHHHHHHHHHHHhhccC-Cccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 469999999999999886432111 11112 22223333444455556555 221 11
Q ss_pred hhh----hhHhHhcCCcEEEEEeeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCCcCCCCCHHHHHHHHHHc
Q 040835 58 YRA----VTSAYYRGAVGAMLVYDITKR-QSFDNVARWLEELRGHADKNIIIMLVGNKS-DLETLRAVPTEDAKEFAEKE 131 (206)
Q Consensus 58 ~~~----~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~~~ 131 (206)
|.. .....+..+| ++++|---+ |- ....|...+......++|++.++-+. +. .-+..+....
T Consensus 81 fe~~~~~~L~~~~~~~~--liviDEIG~mEl--~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~~~ 148 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSD--LIVIDEIGKMEL--KSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKRRP 148 (168)
T ss_dssp HHCCCCCCCHHHHHCCH--EEEE---STTCC--C-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHTTT
T ss_pred HHHHHHHHHHhhcCCCC--EEEEeccchhhh--cCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHhCC
Confidence 111 1222235666 666664211 10 01123333333333578888888666 32 1245666666
Q ss_pred CCeEEEeccCCCCCH
Q 040835 132 GLCFMETSALESTNV 146 (206)
Q Consensus 132 ~~~~~~~Sa~~~~~v 146 (206)
++.+++++..+.+.+
T Consensus 149 ~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 149 DVKIFEVTEENRDAL 163 (168)
T ss_dssp TSEEEE--TTTCCCH
T ss_pred CcEEEEeChhHHhhH
Confidence 788998877665543
No 416
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.60 E-value=0.0025 Score=45.38 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=51.5
Q ss_pred EEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH
Q 040835 46 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAK 125 (206)
Q Consensus 46 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 125 (206)
.+.|+|+|+.... .....+..+|.+|++++++. .++..+..++..+.... .....+++|+.+... ....+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~--~~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM--VEGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc--cchhhHHH
Confidence 6899999975433 24455788999999988764 34455555555555421 234678999998642 11222234
Q ss_pred HHHHHcCCeEE
Q 040835 126 EFAEKEGLCFM 136 (206)
Q Consensus 126 ~~~~~~~~~~~ 136 (206)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555676654
No 417
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.57 E-value=0.0012 Score=47.25 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=59.9
Q ss_pred eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040835 43 KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE 122 (206)
Q Consensus 43 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 122 (206)
..+.+.++|||+... ......+..+|.+++++.++. .+...+..++..+... +.|+.+|+||+|... ...+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~---~~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND---EIAE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc---chHH
Confidence 457899999996532 234456788999999998874 3555666666655543 467889999999643 1345
Q ss_pred HHHHHHHHcCCeEE
Q 040835 123 DAKEFAEKEGLCFM 136 (206)
Q Consensus 123 ~~~~~~~~~~~~~~ 136 (206)
+..++.++.+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 67778888888765
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.56 E-value=0.00055 Score=44.32 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhh
Q 040835 4 DSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQS 83 (206)
Q Consensus 4 ~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 83 (206)
..|+||||+...+...-.. ...+. ..+..+.. +.+.++|+|+..... ....+..+|.+|++++.+ ..+
T Consensus 8 kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s 75 (104)
T cd02042 8 KGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLD 75 (104)
T ss_pred CCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHH
Confidence 5699999998876653321 11111 11122222 678999999864332 336778899999998775 445
Q ss_pred HHHHHHHHH
Q 040835 84 FDNVARWLE 92 (206)
Q Consensus 84 ~~~~~~~~~ 92 (206)
+..+.+++.
T Consensus 76 ~~~~~~~~~ 84 (104)
T cd02042 76 LDGLEKLLE 84 (104)
T ss_pred HHHHHHHHH
Confidence 555555554
No 419
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.54 E-value=0.00058 Score=43.18 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=43.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh-hHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV-TSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 79 (206)
+.|..|+||||+...+...-..... . ...++ .+.++|+++....... .......+|.++++++..
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~------~----v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGK------R----VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPE 69 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC------e----EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCc
Confidence 3588899999999987764332111 1 11122 7899999986432221 245667889999998876
Q ss_pred Ch
Q 040835 80 KR 81 (206)
Q Consensus 80 ~~ 81 (206)
..
T Consensus 70 ~~ 71 (99)
T cd01983 70 AL 71 (99)
T ss_pred hh
Confidence 43
No 420
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00032 Score=55.18 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=29.2
Q ss_pred eEEEEEEEeCCCchhhhh-hhHh-----HhcCCcEEEEEeeCCChhhHHHHHH
Q 040835 43 KNVKAQIWDTAGQERYRA-VTSA-----YYRGAVGAMLVYDITKRQSFDNVAR 89 (206)
Q Consensus 43 ~~~~~~i~D~~G~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~ 89 (206)
.++.+.|+||.|...... +..+ -.-..|-+|+|.|++-....+....
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 357799999999432211 1111 1224788999999987765544433
No 421
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.47 E-value=9.6e-05 Score=54.26 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=37.0
Q ss_pred EEEEEEeCCCchhhhh----h--hHhHhcCCcEEEEEeeC------CChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040835 45 VKAQIWDTAGQERYRA----V--TSAYYRGAVGAMLVYDI------TKRQSFDNVARWLEELRGHADKNIIIMLVGNKSD 112 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~----~--~~~~~~~~d~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 112 (206)
..+.++|+||+-++.. + .-..++.-|.-+.++.. +++..| +..++..+..+.--..|-+-|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhH
Confidence 4578999999754321 1 11233345555544444 334333 33333333333334678888999999
Q ss_pred C
Q 040835 113 L 113 (206)
Q Consensus 113 ~ 113 (206)
+
T Consensus 175 l 175 (290)
T KOG1533|consen 175 L 175 (290)
T ss_pred H
Confidence 7
No 422
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.001 Score=50.79 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=51.2
Q ss_pred EEEEEEEeCCCchhhhh----hhHhHh--cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRA----VTSAYY--RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
...+.|+||+|...... .+..++ ...+.+++|+|++-.. ..+..++..+.. -.+--+|+||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~-- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA-- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCC--
Confidence 46789999999653211 122222 2356688999986331 233333333332 133467899999754
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 040835 118 AVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~S 139 (206)
..-.+..++...++|+..++
T Consensus 226 --~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 --SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred --CccHHHHHHHHHCcCEEEEe
Confidence 34456777778888876665
No 423
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.00096 Score=45.39 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.3
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
+.|++|+|||+|++.+.....
T Consensus 24 i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 24 LYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 579999999999999887654
No 424
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.40 E-value=0.00022 Score=52.58 Aligned_cols=102 Identities=11% Similarity=0.080 Sum_probs=61.9
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQS--FDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE 122 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 122 (206)
..+.|+|+.|..... ....+..+|.+|+=.-.+..+. ....-.|+..+........|..|+.|+++-.. ......
T Consensus 84 ~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQR 160 (231)
T ss_pred CCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHH
Confidence 568999998854322 3445667998888766664332 22223355544444457799999999987321 111122
Q ss_pred HHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 123 DAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 123 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
.+.++.. ++|+|.+......-..++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2233333 58999988887766666655
No 425
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.00025 Score=56.05 Aligned_cols=117 Identities=22% Similarity=0.194 Sum_probs=70.9
Q ss_pred eeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh---hHHHH--HHHHHHHHhcCCCCCcEEE
Q 040835 32 EFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ---SFDNV--ARWLEELRGHADKNIIIML 106 (206)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p~iv 106 (206)
+.......+......+.|.|.||+..|-.....-..+||+.++|+++.-.+ .|+.- .+-+..+.... .-...|+
T Consensus 144 tvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv 222 (501)
T KOG0459|consen 144 TVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIV 222 (501)
T ss_pred eeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEE
Confidence 333334444455677999999999988766666677899999999884322 12211 11122222222 2356889
Q ss_pred EEeCCCCCcCCCCCH-------HHHHHHHHHcC------CeEEEeccCCCCCHHHHH
Q 040835 107 VGNKSDLETLRAVPT-------EDAKEFAEKEG------LCFMETSALESTNVELAF 150 (206)
Q Consensus 107 v~nK~D~~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 150 (206)
++||+|..... .+. +.+..+....| ..++.+|..+|.++.+..
T Consensus 223 ~vNKMddPtvn-Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 223 LINKMDDPTVN-WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred EEEeccCCccC-cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 99999975311 121 22334444333 358999999999988755
No 426
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.25 E-value=0.0046 Score=48.97 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|.-|||||||+++++..
T Consensus 9 ltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 9 VTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEECCCCCHHHHHHHHHhc
Confidence 4689999999999999864
No 427
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.25 E-value=0.00015 Score=48.92 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|++|+|||++++.+....
T Consensus 9 i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999998853
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.25 E-value=0.00019 Score=41.70 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.8
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|+.|+|||||++++.-
T Consensus 28 i~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 28 ITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998764
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0018 Score=51.96 Aligned_cols=63 Identities=25% Similarity=0.170 Sum_probs=36.5
Q ss_pred EEEEEEeCCCchhhhhhh----H--hHhcCCcEEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 45 VKAQIWDTAGQERYRAVT----S--AYYRGAVGAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
+.+.|+||+|........ . .-.-+.|-+++|+|+.-....... +.+...+ . + .=||++|.|-.
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l-~-----i-tGvIlTKlDGd 252 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL-G-----I-TGVILTKLDGD 252 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc-C-----C-ceEEEEcccCC
Confidence 568999999954332211 1 113357789999999876544333 3332222 1 1 24678898864
No 430
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.17 E-value=0.0017 Score=43.67 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
+.|++|+|||+|++.+...-
T Consensus 3 l~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT
T ss_pred EECcCCCCeeHHHHHHHhhc
Confidence 47999999999999988753
No 431
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.15 E-value=0.00028 Score=55.61 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=39.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 55 (206)
|+|-|++||||+||.|........... .|.+.....+.++ -.+.|.|.||.
T Consensus 257 ViG~PNVGKSSvINsL~~~k~C~vg~~-pGvT~smqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 257 IIGYPNVGKSSVINSLKRRKACNVGNV-PGVTRSMQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred eecCCCCChhHHHHHHHHhccccCCCC-ccchhhhhheecc---CCceeccCCce
Confidence 689999999999999998877544432 2677777677664 34789999994
No 432
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.14 E-value=0.0028 Score=48.76 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=58.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc---h---------------------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ---E--------------------- 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---~--------------------- 56 (206)
++|++|-|||+++++|....- +..... ...+.+..+.+|.. .
T Consensus 66 ivG~snnGKT~Ii~rF~~~hp-~~~d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~ 131 (302)
T PF05621_consen 66 IVGDSNNGKTMIIERFRRLHP-PQSDED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVA 131 (302)
T ss_pred EecCCCCcHHHHHHHHHHHCC-CCCCCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHH
Confidence 589999999999999998543 222211 11234555555431 1
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCCh---hhHHHHHHHHHHHHhcCC-CCCcEEEEEeC
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKR---QSFDNVARWLEELRGHAD-KNIIIMLVGNK 110 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK 110 (206)
........+++....=++++|--+. .+....+..++.+....+ ..+|+|.+|++
T Consensus 132 ~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 132 KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1122233566777888899997542 234445556666665553 67999999875
No 433
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.14 E-value=0.00027 Score=54.01 Aligned_cols=54 Identities=26% Similarity=0.355 Sum_probs=31.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc----cccceeeEEEE-EEECCeEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK----ATIGVEFQTKT-LVIHHKNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 55 (206)
|+|.||+|||+|+|++.......... .-.|.+..... +.+.. .-.+.++||||.
T Consensus 148 VvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-rp~vy~iDTPGi 206 (335)
T KOG2485|consen 148 VVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-RPPVYLIDTPGI 206 (335)
T ss_pred EEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-CCceEEecCCCc
Confidence 68999999999999887643221111 11133333333 22222 234789999993
No 434
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.06 E-value=0.002 Score=43.69 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
+.|+.|+|||||++.+...-
T Consensus 27 l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 27 LKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEcCCCCCHHHHHHHHHHHc
Confidence 47999999999999998753
No 435
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.01 E-value=0.0027 Score=43.61 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=36.2
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE--CCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEE
Q 040835 2 IGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI--HHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 75 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 75 (206)
-|+-|+|||||.+.+...--......+ .++....... ...-+++.++=....++...+-..-+-..|++++|
T Consensus 31 ~GdLGAGKTtf~rgi~~~Lg~~~~V~S--PTFtlv~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~~gv~lI 104 (149)
T COG0802 31 SGDLGAGKTTLVRGIAKGLGVDGNVKS--PTFTLVEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDGDGICLI 104 (149)
T ss_pred EcCCcCChHHHHHHHHHHcCCCCcccC--CCeeeehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCCCcEEEE
Confidence 489999999999998865442222222 2222222221 22345555655554444333322222223555554
No 436
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.01 E-value=0.00031 Score=46.74 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++||||||+++.|...
T Consensus 4 I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998874
No 437
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.98 E-value=0.0069 Score=49.36 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=35.2
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSD 112 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 112 (206)
..-.....++++++++|+= .++.--+..++++++..+..+...++.+++|-.|.+
T Consensus 147 QRVEIlKaLyr~a~iLILD-EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 147 QRVEILKALYRGARLLILD-EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHHHHHhcCCCEEEEc-CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 3344566778888844431 233333456677777777777667888888887765
No 438
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.97 E-value=0.0055 Score=43.85 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 30 IVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCChHHHHHHHHHcCC
Confidence 58999999999999988754
No 439
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.0021 Score=49.94 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCchhh-----hhh--hHhHhcCC-----cEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 44 NVKAQIWDTAGQERY-----RAV--TSAYYRGA-----VGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~-----~~~--~~~~~~~~-----d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
++.+.|+||+|.-.. ..+ ....+... +-+++++|++-.. ++..++.+...+ .. --+|+||
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-~l------~GiIlTK 293 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-GL------DGIILTK 293 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-CC------ceEEEEe
Confidence 577999999993211 111 11222323 3378888998765 344444443322 21 3478899
Q ss_pred CCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 040835 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAF 150 (206)
Q Consensus 111 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 150 (206)
.|-...- -.+..++...++|+.++-. |++++++-
T Consensus 294 lDgtAKG----G~il~I~~~l~~PI~fiGv--GE~~~DL~ 327 (340)
T COG0552 294 LDGTAKG----GIILSIAYELGIPIKFIGV--GEGYDDLR 327 (340)
T ss_pred cccCCCc----ceeeeHHHHhCCCEEEEeC--CCChhhcc
Confidence 9964311 2245677778888877653 44455543
No 440
>PRK04195 replication factor C large subunit; Provisional
Probab=96.96 E-value=0.016 Score=48.22 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|++|+||||+++.|....
T Consensus 44 L~GppG~GKTtla~ala~el 63 (482)
T PRK04195 44 LYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 57999999999999997743
No 441
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0027 Score=51.92 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=56.4
Q ss_pred CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-cCCCCC
Q 040835 42 HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE-TLRAVP 120 (206)
Q Consensus 42 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~ 120 (206)
+...-+.++|.||+-.|.+.....++-.|+.++|+|--+.--......+.+.+.+. +.-++++||+|.. =+-+++
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhHHHHhhcCC
Confidence 33566889999999999999999999999999999987654322222333444332 3335779999952 113455
Q ss_pred HHHHHHHHHH
Q 040835 121 TEDAKEFAEK 130 (206)
Q Consensus 121 ~~~~~~~~~~ 130 (206)
.+++.+..++
T Consensus 171 ~EeLyqtf~R 180 (842)
T KOG0469|consen 171 QEELYQTFQR 180 (842)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.95 E-value=0.0004 Score=47.63 Aligned_cols=18 Identities=44% Similarity=0.647 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+||||||||++.|..
T Consensus 4 ~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999999874
No 443
>PRK10646 ADP-binding protein; Provisional
Probab=96.90 E-value=0.0055 Score=42.56 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+-|+-|+|||||++.+...
T Consensus 33 L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 33 LYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3599999999999999764
No 444
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.86 E-value=0.00063 Score=40.62 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
+.|++|+||||+.+.|...-
T Consensus 4 i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 4 ITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999988753
No 445
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.80 E-value=0.0065 Score=49.08 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||++++.+...
T Consensus 60 I~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 60 IYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999999864
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.73 E-value=0.00072 Score=46.02 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 16 i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEESTTSSHHHHHHHHTTSS
T ss_pred EEccCCCccccceeeecccc
Confidence 58999999999999888743
No 447
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.022 Score=42.19 Aligned_cols=77 Identities=31% Similarity=0.284 Sum_probs=47.9
Q ss_pred EEEEEEeC-CCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040835 45 VKAQIWDT-AGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED 123 (206)
Q Consensus 45 ~~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 123 (206)
.++.++|| +|.+.|. +...+++|.+|.|+|++- .++...++......... -.++.+|+||.|.. ...
T Consensus 134 ~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~e~------e~~ 201 (255)
T COG3640 134 YEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVDEE------EEL 201 (255)
T ss_pred CcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeeccch------hHH
Confidence 44677777 5666554 566789999999999974 34444444322222221 37899999999953 333
Q ss_pred HHHHHHHcCC
Q 040835 124 AKEFAEKEGL 133 (206)
Q Consensus 124 ~~~~~~~~~~ 133 (206)
....+...+.
T Consensus 202 ~~~~~~~~~~ 211 (255)
T COG3640 202 LRELAEELGL 211 (255)
T ss_pred HHhhhhccCC
Confidence 4444554454
No 448
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.73 E-value=0.0056 Score=53.38 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.6
Q ss_pred ccCCCCCHHHHHHHHhcCCCCCC
Q 040835 2 IGDSAVGKSQLLARFARDEFSLD 24 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~~~~~~ 24 (206)
+|+.++|||||+|.|++..|..-
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m 23 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVM 23 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccc
Confidence 69999999999999999988653
No 449
>PRK08118 topology modulation protein; Reviewed
Probab=96.70 E-value=0.00086 Score=47.54 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||...|...
T Consensus 6 I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 6 LIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999998864
No 450
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.00057 Score=48.60 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=18.3
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|+.|||||||+++|+...
T Consensus 9 lsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 47999999999999999876
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.69 E-value=0.00089 Score=48.83 Aligned_cols=21 Identities=43% Similarity=0.445 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
++|+.|||||||++++-.-..
T Consensus 33 iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 33 IIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EECCCCCCHHHHHHHHHCCcC
Confidence 589999999999998766433
No 452
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.69 E-value=0.0039 Score=44.41 Aligned_cols=44 Identities=25% Similarity=0.130 Sum_probs=27.6
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
|++++|+|+.++.+-.. ..+...+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987532211 12222211 1224689999999999964
No 453
>PRK01889 GTPase RsgA; Reviewed
Probab=96.68 E-value=0.0013 Score=52.36 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.3
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|.+|+|||||+|.|.+...
T Consensus 200 lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 200 LLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EECCCCccHHHHHHHHHHhcc
Confidence 589999999999999997543
No 454
>PRK07261 topology modulation protein; Provisional
Probab=96.64 E-value=0.001 Score=47.28 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||.+.|...
T Consensus 5 i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5899999999999998653
No 455
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0011 Score=44.66 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL 23 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~ 23 (206)
|+|++|+||||++..+...-...
T Consensus 7 l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EECCCCCcHHHHHHHHHhccCCC
Confidence 57999999999999998865544
No 456
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.00099 Score=47.68 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+|||||||+..+|...
T Consensus 5 ilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 5 ILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999999986
No 457
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.001 Score=49.11 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|||||||++-+-+-..
T Consensus 36 I~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 36 IVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EECCCCCCHHHHHHHHhcccC
Confidence 589999999999998766443
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.61 E-value=0.0088 Score=43.62 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+||||+++.++...
T Consensus 6 I~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 6 VTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999987754
No 459
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.61 E-value=0.0038 Score=41.72 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.9
Q ss_pred ccCCCCCHHHHHHHHhcC
Q 040835 2 IGDSAVGKSQLLARFARD 19 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~ 19 (206)
-|+-|+|||||++.|...
T Consensus 21 ~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 21 SGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 589999999999998864
No 460
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.60 E-value=0.021 Score=44.13 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.4
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|.|++|+||||+++.|-
T Consensus 11 i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 11 VTGLSGAGKSVALRALE 27 (288)
T ss_pred EECCCCCcHHHHHHHHH
Confidence 57999999999999984
No 461
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.60 E-value=0.00044 Score=54.65 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG 54 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 54 (206)
|+|.|++||||+||+|....+....+.. |.+..-..+++ ...+.++||||
T Consensus 312 fiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKVWQYItL---mkrIfLIDcPG 361 (572)
T KOG2423|consen 312 FIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKVWQYITL---MKRIFLIDCPG 361 (572)
T ss_pred eecCCCCchHHHHHHHhhcccccccCCC-CcchHHHHHHH---HhceeEecCCC
No 462
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0084 Score=41.86 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 30 i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 30 LVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988754
No 463
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.59 E-value=0.044 Score=37.76 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 31 i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 58999999999999988854
No 464
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.59 E-value=0.0012 Score=49.81 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
++|+.|+|||||++.+.+
T Consensus 33 iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 33 ILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 589999999999999987
No 465
>PLN03025 replication factor C subunit; Provisional
Probab=96.58 E-value=0.016 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|.|++|+||||++..+...-+
T Consensus 39 l~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 39 LSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 469999999999999876543
No 466
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.57 E-value=0.041 Score=38.84 Aligned_cols=92 Identities=9% Similarity=0.034 Sum_probs=67.9
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNV 146 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 146 (206)
...|.++|++|.....++..++.-+..+....-.++ +.++++-........+...++.+++..+..|++.+.-...++.
T Consensus 63 prIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~ 141 (176)
T PF11111_consen 63 PRIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGR 141 (176)
T ss_pred ceeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHH
Confidence 558999999999999999888776665533221233 3444555555554677899999999999999999998888877
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
..+-+.+++.+.-
T Consensus 142 ~~lAqRLL~~lqi 154 (176)
T PF11111_consen 142 TSLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665543
No 467
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.56 E-value=0.0013 Score=47.52 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.9
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|||||||+++|+...
T Consensus 9 l~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 9 ISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 58999999999999998753
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.52 E-value=0.0018 Score=44.25 Aligned_cols=19 Identities=53% Similarity=0.744 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|...
T Consensus 4 i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 5899999999999999874
No 469
>PHA02518 ParA-like protein; Provisional
Probab=96.48 E-value=0.028 Score=41.11 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=41.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh--hHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCC
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ--SFDNVARWLEELRGHADKNII-IMLVGNKSDL 113 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 113 (206)
.+.+.|+|+||.. .......+..+|.+|+++.++... ....+..++..+.... ...| ..++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEEEeccCC
Confidence 4678999999873 344677888999999998886422 2333334444333222 2344 4566677653
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.48 E-value=0.016 Score=44.25 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|++|+||||+++.++..-
T Consensus 85 isG~tGSGKTT~l~all~~i 104 (264)
T cd01129 85 VTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EECCCCCcHHHHHHHHHhhh
Confidence 57999999999999988754
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.47 E-value=0.0016 Score=47.00 Aligned_cols=20 Identities=45% Similarity=0.677 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||++.|....
T Consensus 7 l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 7 LMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 58999999999999997643
No 472
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.46 E-value=0.009 Score=46.98 Aligned_cols=94 Identities=18% Similarity=0.101 Sum_probs=60.7
Q ss_pred eCCCc-hhhhhhhHhHhcCCcEEEEEeeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH
Q 040835 51 DTAGQ-ERYRAVTSAYYRGAVGAMLVYDITKRQSFD--NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF 127 (206)
Q Consensus 51 D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 127 (206)
+.+|+ ..+.......+..+|+++.|+|+.++.+-. .+.++ . .+.|.++|+||.|+.+... ...=...+
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~-------v-~~k~~i~vlNK~DL~~~~~-~~~W~~~~ 86 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERI-------V-KEKPKLLVLNKADLAPKEV-TKKWKKYF 86 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHH-------H-ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence 44664 456667788899999999999999876432 22222 1 2455699999999975222 22223333
Q ss_pred HHHcCCeEEEeccCCCCCHHHHHHHH
Q 040835 128 AEKEGLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 128 ~~~~~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
..+.+...+.++++.+.+...+...+
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~~~ 112 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRKAL 112 (322)
T ss_pred HhcCCCccEEEEeecccCccchHHHH
Confidence 34446667888888888777666433
No 473
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.45 E-value=0.0017 Score=48.05 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999998853
No 474
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.0017 Score=48.37 Aligned_cols=21 Identities=43% Similarity=0.479 Sum_probs=18.0
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
++|++|+|||||++.+.+-..
T Consensus 34 ilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 34 ILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999887433
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.44 E-value=0.0016 Score=46.52 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|...
T Consensus 6 i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 6 VVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999998775
No 476
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.44 E-value=0.0015 Score=47.92 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||++.|....
T Consensus 18 i~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 18 ISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred EECcCCCCHHHHHHHHHhcC
Confidence 57999999999999997643
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.43 E-value=0.0092 Score=43.01 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||++.|++..
T Consensus 30 I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 30 ISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 58999999999999988743
No 478
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0018 Score=48.73 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+.|+|||||+..+++
T Consensus 35 iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 35 LIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 589999999999999998
No 479
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.42 E-value=0.0016 Score=43.54 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|.+||||||+++.|....
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999988753
No 480
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.42 E-value=0.0018 Score=46.51 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+++.|..
T Consensus 8 i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 8 IVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999999984
No 481
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.41 E-value=0.0018 Score=47.58 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 32 l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 32 IVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 58999999999999998753
No 482
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.39 E-value=0.019 Score=45.53 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|||||||+++|+..-
T Consensus 167 I~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 167 LCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred EECCCCccHHHHHHHHHccc
Confidence 57999999999999998753
No 483
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.38 E-value=0.0019 Score=46.64 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 23 i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 23 LLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988753
No 484
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.37 E-value=0.0019 Score=47.26 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 31 LTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 58999999999999998853
No 485
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.35 E-value=0.002 Score=41.88 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.4
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
++|++|+|||||++.+.
T Consensus 20 I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 20 ITGDSGIGKTELALELI 36 (107)
T ss_pred EEcCCCCCHHHHHHHhh
Confidence 58999999999999875
No 486
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.34 E-value=0.0021 Score=47.48 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999998853
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0021 Score=48.11 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999998753
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.33 E-value=0.002 Score=46.88 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|||||||++.|.+.
T Consensus 4 i~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 4 IAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998774
No 489
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.32 E-value=0.0023 Score=47.52 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|||||||++.|.+.
T Consensus 4 I~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 4 IAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred eeCCCCCCHHHHHHHHHHH
Confidence 5799999999999998864
No 490
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.31 E-value=0.0022 Score=45.80 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=15.5
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.|+|||||++.++
T Consensus 26 l~G~nG~GKSTLl~~il 42 (176)
T cd03238 26 VTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EECCCCCCHHHHHHHHh
Confidence 58999999999999886
No 491
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0022 Score=47.45 Aligned_cols=20 Identities=50% Similarity=0.579 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999998753
No 492
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0023 Score=45.76 Aligned_cols=19 Identities=47% Similarity=0.527 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+.
T Consensus 31 i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5899999999999999875
No 493
>PRK08727 hypothetical protein; Validated
Probab=96.30 E-value=0.026 Score=42.23 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||.|+..+...
T Consensus 46 l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 46 LSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998764
No 494
>PRK08233 hypothetical protein; Provisional
Probab=96.30 E-value=0.0023 Score=45.78 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|.+|||||||.+.|...
T Consensus 8 I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 8 IAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 4699999999999998864
No 495
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.30 E-value=0.0019 Score=44.32 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|+|||||++.|++.-.
T Consensus 5 VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 5 VVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp EEESTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999988543
No 496
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.29 E-value=0.0021 Score=44.68 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+|||||||++.+|...
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 5899999999999998874
No 497
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.0029 Score=46.19 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.6
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|+|||||+..|++.-.
T Consensus 32 ilGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 32 ILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EECCCCccHHHHHHHhhCccC
Confidence 589999999999999998644
No 498
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.29 E-value=0.0022 Score=47.11 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|.+.
T Consensus 11 I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 11 IGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999999863
No 499
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.29 E-value=0.0023 Score=47.12 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988753
No 500
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0023 Score=46.73 Aligned_cols=17 Identities=53% Similarity=0.696 Sum_probs=15.1
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
++|+.|+|||||++.|-
T Consensus 38 lIGPSGcGKST~LR~lN 54 (253)
T COG1117 38 LIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EECCCCcCHHHHHHHHH
Confidence 58999999999998754
Done!