Query 040835
Match_columns 206
No_of_seqs 159 out of 1757
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 19:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.3E-41 4.5E-46 249.8 17.9 160 1-160 18-177 (216)
2 3cpj_B GTP-binding protein YPT 100.0 5.6E-37 1.9E-41 226.8 17.6 168 1-168 18-185 (223)
3 2bcg_Y Protein YP2, GTP-bindin 100.0 9E-36 3.1E-40 217.7 22.2 167 1-167 13-179 (206)
4 2bov_A RAla, RAS-related prote 100.0 1.2E-34 4E-39 211.4 21.3 161 1-162 19-180 (206)
5 1vg8_A RAS-related protein RAB 100.0 4.7E-35 1.6E-39 213.8 18.3 165 1-166 13-182 (207)
6 2ew1_A RAS-related protein RAB 100.0 8.4E-34 2.9E-38 206.6 20.3 165 1-165 31-195 (201)
7 2a5j_A RAS-related protein RAB 100.0 1.7E-33 5.8E-38 203.3 20.8 163 1-163 26-188 (191)
8 1zbd_A Rabphilin-3A; G protein 100.0 2.5E-33 8.6E-38 204.1 21.7 164 1-164 13-176 (203)
9 2fu5_C RAS-related protein RAB 100.0 4.5E-34 1.5E-38 204.8 17.1 164 1-164 13-176 (183)
10 3tkl_A RAS-related protein RAB 100.0 3.5E-33 1.2E-37 202.1 21.8 163 1-163 21-183 (196)
11 2bme_A RAB4A, RAS-related prot 100.0 2.4E-33 8.1E-38 201.4 20.2 165 1-165 15-179 (186)
12 2hup_A RAS-related protein RAB 100.0 1.9E-33 6.6E-38 204.7 19.8 161 1-161 34-195 (201)
13 1z0f_A RAB14, member RAS oncog 100.0 4.1E-33 1.4E-37 198.7 20.2 159 1-159 20-178 (179)
14 2oil_A CATX-8, RAS-related pro 100.0 5.2E-33 1.8E-37 200.9 21.0 163 1-163 30-192 (193)
15 2gf9_A RAS-related protein RAB 100.0 5.3E-33 1.8E-37 200.3 20.6 161 1-161 27-187 (189)
16 2efe_B Small GTP-binding prote 100.0 6.4E-33 2.2E-37 198.2 20.4 160 1-160 17-176 (181)
17 2o52_A RAS-related protein RAB 100.0 3.4E-33 1.2E-37 203.2 19.3 165 1-165 30-194 (200)
18 3tw8_B RAS-related protein RAB 100.0 7.7E-33 2.6E-37 197.6 20.7 163 1-164 14-176 (181)
19 1r2q_A RAS-related protein RAB 100.0 8.5E-33 2.9E-37 195.4 20.0 157 1-157 11-167 (170)
20 4dsu_A GTPase KRAS, isoform 2B 100.0 1.6E-32 5.6E-37 197.3 21.6 162 1-164 9-171 (189)
21 3dz8_A RAS-related protein RAB 100.0 1E-33 3.5E-38 204.5 15.2 162 1-162 28-189 (191)
22 3cph_A RAS-related protein SEC 100.0 1.6E-32 5.5E-37 201.2 21.4 166 1-167 25-190 (213)
23 1z0j_A RAB-22, RAS-related pro 100.0 2.2E-32 7.7E-37 193.3 21.0 157 1-157 11-167 (170)
24 1ek0_A Protein (GTP-binding pr 100.0 1.3E-32 4.5E-37 194.4 19.6 157 1-157 8-167 (170)
25 1z08_A RAS-related protein RAB 100.0 3.6E-33 1.2E-37 197.5 16.6 158 1-158 11-168 (170)
26 1g16_A RAS-related protein SEC 100.0 7.2E-33 2.5E-37 195.9 17.9 159 1-160 8-166 (170)
27 2il1_A RAB12; G-protein, GDP, 100.0 6.9E-33 2.4E-37 200.3 17.9 160 1-160 31-191 (192)
28 2f7s_A C25KG, RAS-related prot 100.0 9E-33 3.1E-37 203.3 18.6 164 1-164 30-204 (217)
29 2g6b_A RAS-related protein RAB 100.0 1.8E-32 6E-37 195.8 19.4 160 1-160 15-175 (180)
30 1z2a_A RAS-related protein RAB 100.0 1.4E-32 4.7E-37 194.1 18.0 158 1-159 10-167 (168)
31 2nzj_A GTP-binding protein REM 100.0 3.9E-32 1.3E-36 193.0 20.3 162 1-163 9-173 (175)
32 2fg5_A RAB-22B, RAS-related pr 100.0 1.1E-32 3.8E-37 199.2 17.6 159 1-159 28-186 (192)
33 3bc1_A RAS-related protein RAB 100.0 4.2E-32 1.4E-36 195.9 20.6 164 1-164 16-190 (195)
34 1x3s_A RAS-related protein RAB 100.0 5.2E-32 1.8E-36 195.7 21.1 160 1-161 20-180 (195)
35 3kkq_A RAS-related protein M-R 100.0 4.6E-32 1.6E-36 194.3 20.3 158 1-159 23-182 (183)
36 2y8e_A RAB-protein 6, GH09086P 100.0 1.6E-32 5.4E-37 195.7 17.5 159 1-159 19-177 (179)
37 3t5g_A GTP-binding protein RHE 100.0 2.2E-32 7.5E-37 195.6 18.3 160 1-161 11-171 (181)
38 1z06_A RAS-related protein RAB 100.0 4.5E-32 1.5E-36 195.5 19.4 159 1-159 25-188 (189)
39 2fn4_A P23, RAS-related protei 100.0 5E-32 1.7E-36 193.4 19.4 160 1-161 14-174 (181)
40 2p5s_A RAS and EF-hand domain 100.0 1.4E-32 4.9E-37 199.7 16.7 158 1-158 33-196 (199)
41 3q85_A GTP-binding protein REM 100.0 3E-32 1E-36 192.7 17.9 160 1-160 7-168 (169)
42 2gf0_A GTP-binding protein DI- 100.0 1.1E-32 3.8E-37 199.9 15.6 156 1-158 13-170 (199)
43 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-31 4.5E-36 190.7 20.5 158 1-159 12-174 (177)
44 3cbq_A GTP-binding protein REM 100.0 3.5E-32 1.2E-36 197.2 17.5 160 1-160 28-189 (195)
45 2hxs_A RAB-26, RAS-related pro 100.0 1.1E-32 3.7E-37 196.5 14.6 160 1-160 11-174 (178)
46 3ihw_A Centg3; RAS, centaurin, 100.0 1.9E-31 6.3E-36 191.6 20.4 155 1-162 25-183 (184)
47 3c5c_A RAS-like protein 12; GD 100.0 4.4E-32 1.5E-36 195.3 17.1 156 1-158 26-185 (187)
48 3clv_A RAB5 protein, putative; 100.0 2.8E-31 9.7E-36 193.0 21.3 158 1-161 12-206 (208)
49 1u8z_A RAS-related protein RAL 100.0 1.1E-31 3.9E-36 189.2 18.5 158 1-159 9-167 (168)
50 3reg_A RHO-like small GTPase; 100.0 9.8E-32 3.4E-36 194.4 18.5 159 1-161 28-190 (194)
51 3oes_A GTPase rhebl1; small GT 100.0 3.2E-32 1.1E-36 198.2 15.7 160 1-161 29-189 (201)
52 3q72_A GTP-binding protein RAD 100.0 1.8E-31 6.1E-36 188.2 18.8 158 1-160 7-165 (166)
53 3q3j_B RHO-related GTP-binding 100.0 5.8E-32 2E-36 198.7 16.8 159 1-161 32-205 (214)
54 2yc2_C IFT27, small RAB-relate 100.0 2.3E-32 8E-37 199.4 14.6 164 1-164 25-197 (208)
55 1ky3_A GTP-binding protein YPT 100.0 7.2E-32 2.5E-36 192.7 16.8 161 1-161 13-180 (182)
56 2a9k_A RAS-related protein RAL 100.0 2.8E-31 9.6E-36 190.4 19.7 160 1-161 23-183 (187)
57 2iwr_A Centaurin gamma 1; ANK 100.0 2.5E-31 8.5E-36 189.6 19.1 158 1-165 12-175 (178)
58 2j0v_A RAC-like GTP-binding pr 100.0 1.7E-32 5.9E-37 201.0 13.4 162 1-164 14-185 (212)
59 1c1y_A RAS-related protein RAP 100.0 1.1E-31 3.8E-36 189.2 16.9 157 1-158 8-166 (167)
60 1kao_A RAP2A; GTP-binding prot 100.0 1.7E-31 6E-36 188.0 17.9 158 1-159 8-166 (167)
61 2atv_A RERG, RAS-like estrogen 100.0 3.2E-31 1.1E-35 192.1 18.9 160 1-162 33-194 (196)
62 2q3h_A RAS homolog gene family 100.0 4.2E-31 1.4E-35 192.1 19.5 160 1-162 25-198 (201)
63 2g3y_A GTP-binding protein GEM 100.0 6.3E-31 2.2E-35 192.5 19.9 159 1-160 42-204 (211)
64 2atx_A Small GTP binding prote 100.0 8.7E-31 3E-35 189.4 19.1 156 1-158 23-192 (194)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 2.5E-31 8.7E-36 190.8 16.0 157 1-159 12-183 (184)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.6E-31 1.2E-35 189.8 16.7 158 1-160 10-181 (186)
67 3con_A GTPase NRAS; structural 100.0 3E-30 1E-34 185.9 20.5 161 1-163 26-187 (190)
68 1gwn_A RHO-related GTP-binding 100.0 5.6E-31 1.9E-35 192.3 16.3 157 1-159 33-204 (205)
69 2j1l_A RHO-related GTP-binding 100.0 8.1E-31 2.8E-35 192.6 16.8 159 1-161 39-211 (214)
70 2gco_A H9, RHO-related GTP-bin 100.0 2.4E-30 8.3E-35 188.2 19.1 157 1-159 30-200 (201)
71 2erx_A GTP-binding protein DI- 100.0 1.2E-30 3.9E-35 184.7 16.6 156 1-157 8-165 (172)
72 2ce2_X GTPase HRAS; signaling 100.0 4.6E-30 1.6E-34 180.4 19.3 156 1-158 8-164 (166)
73 4djt_A GTP-binding nuclear pro 100.0 2.4E-31 8.2E-36 195.8 12.9 161 1-161 16-177 (218)
74 2fv8_A H6, RHO-related GTP-bin 100.0 5.3E-30 1.8E-34 187.3 19.0 157 1-159 30-200 (207)
75 2cjw_A GTP-binding protein GEM 100.0 8.4E-30 2.9E-34 184.2 19.3 160 1-161 11-174 (192)
76 3l0i_B RAS-related protein RAB 100.0 3.7E-33 1.3E-37 202.8 0.2 159 1-159 38-196 (199)
77 2f9l_A RAB11B, member RAS onco 100.0 5.4E-29 1.9E-33 180.8 21.4 164 1-164 10-173 (199)
78 3gj0_A GTP-binding nuclear pro 100.0 8.2E-31 2.8E-35 193.4 11.7 160 1-163 20-179 (221)
79 3t1o_A Gliding protein MGLA; G 100.0 1.3E-30 4.4E-35 188.6 12.2 159 1-163 19-196 (198)
80 3bwd_D RAC-like GTP-binding pr 100.0 5.7E-31 2E-35 188.2 10.2 156 1-158 13-180 (182)
81 4bas_A ADP-ribosylation factor 100.0 1.8E-30 6.1E-35 188.3 12.5 156 1-162 22-192 (199)
82 4gzl_A RAS-related C3 botulinu 100.0 4.6E-30 1.6E-34 187.2 14.4 155 1-157 35-203 (204)
83 1r8s_A ADP-ribosylation factor 100.0 7.6E-30 2.6E-34 179.4 10.1 152 1-159 5-162 (164)
84 1f6b_A SAR1; gtpases, N-termin 100.0 5E-29 1.7E-33 180.9 13.8 149 1-156 30-196 (198)
85 1upt_A ARL1, ADP-ribosylation 100.0 2.4E-29 8.2E-34 178.0 11.6 152 1-159 12-169 (171)
86 1zd9_A ADP-ribosylation factor 100.0 8.3E-29 2.8E-33 178.3 14.5 153 1-159 27-185 (188)
87 1oix_A RAS-related protein RAB 100.0 6.6E-28 2.3E-32 174.1 19.0 157 1-157 34-190 (191)
88 1ksh_A ARF-like protein 2; sma 100.0 2.5E-28 8.4E-33 175.3 16.5 153 1-160 23-181 (186)
89 2h57_A ADP-ribosylation factor 100.0 2.6E-28 8.8E-33 175.9 16.5 153 1-159 26-187 (190)
90 1m2o_B GTP-binding protein SAR 100.0 2.2E-28 7.6E-33 176.4 16.1 149 1-156 28-189 (190)
91 1zj6_A ADP-ribosylation factor 100.0 4.5E-28 1.5E-32 174.2 15.3 152 1-159 21-178 (187)
92 2wkq_A NPH1-1, RAS-related C3 100.0 1.3E-27 4.4E-32 186.2 18.5 157 1-159 160-330 (332)
93 1fzq_A ADP-ribosylation factor 100.0 5.3E-28 1.8E-32 173.1 14.8 152 1-159 21-178 (181)
94 2h17_A ADP-ribosylation factor 100.0 2E-28 7E-33 175.2 12.6 149 1-156 26-180 (181)
95 2b6h_A ADP-ribosylation factor 100.0 3.8E-29 1.3E-33 180.7 7.9 151 1-158 34-190 (192)
96 2zej_A Dardarin, leucine-rich 100.0 4.4E-29 1.5E-33 179.1 8.0 158 1-159 7-178 (184)
97 3th5_A RAS-related C3 botulinu 99.9 1.5E-30 5.3E-35 189.6 0.0 155 1-157 35-203 (204)
98 1moz_A ARL1, ADP-ribosylation 100.0 1.4E-27 4.8E-32 170.8 13.7 154 1-161 23-182 (183)
99 3llu_A RAS-related GTP-binding 100.0 3.8E-28 1.3E-32 175.9 10.4 154 1-157 25-195 (196)
100 2x77_A ADP-ribosylation factor 100.0 9.6E-29 3.3E-33 177.9 6.8 153 1-160 27-185 (189)
101 2wji_A Ferrous iron transport 99.9 5.7E-27 1.9E-31 165.3 12.9 148 1-157 8-163 (165)
102 2qu8_A Putative nucleolar GTP- 99.9 2.3E-26 7.9E-31 170.4 15.5 162 1-165 34-211 (228)
103 2fh5_B SR-beta, signal recogni 99.9 8.7E-27 3E-31 170.9 10.4 153 1-156 12-213 (214)
104 3r7w_B Gtpase2, GTP-binding pr 99.9 1.3E-27 4.5E-32 183.3 5.1 155 1-162 4-177 (331)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 3.4E-26 1.2E-30 176.4 12.9 154 1-158 8-180 (307)
106 2lkc_A Translation initiation 99.9 2.4E-26 8.1E-31 163.6 10.8 152 1-161 13-173 (178)
107 2cxx_A Probable GTP-binding pr 99.9 2E-26 6.8E-31 165.7 9.8 154 1-163 6-188 (190)
108 3c5h_A Glucocorticoid receptor 99.9 1.3E-27 4.4E-32 179.9 3.0 156 1-158 24-254 (255)
109 3o47_A ADP-ribosylation factor 99.9 4.7E-27 1.6E-31 182.8 6.1 152 1-159 170-327 (329)
110 3lvq_E ARF-GAP with SH3 domain 99.9 4.6E-25 1.6E-29 180.7 16.5 153 1-160 327-485 (497)
111 1svi_A GTP-binding protein YSX 99.9 1E-25 3.5E-30 162.7 11.3 150 1-157 28-193 (195)
112 2wjg_A FEOB, ferrous iron tran 99.9 1.3E-25 4.5E-30 161.2 10.8 151 1-160 12-170 (188)
113 3iev_A GTP-binding protein ERA 99.9 2.8E-25 9.6E-30 171.4 13.4 153 1-157 15-180 (308)
114 2dyk_A GTP-binding protein; GT 99.9 4.5E-25 1.5E-29 154.4 11.8 146 1-157 6-160 (161)
115 2gj8_A MNME, tRNA modification 99.9 9.7E-26 3.3E-30 160.1 7.9 147 1-157 9-164 (172)
116 3b1v_A Ferrous iron uptake tra 99.9 3E-25 1E-29 168.0 10.2 147 1-157 8-162 (272)
117 3a1s_A Iron(II) transport prot 99.9 9.9E-25 3.4E-29 164.3 12.5 149 1-158 10-166 (258)
118 3dpu_A RAB family protein; roc 99.9 9.3E-26 3.2E-30 186.1 7.0 156 1-160 46-209 (535)
119 3iby_A Ferrous iron transport 99.9 2.9E-25 9.8E-30 167.0 8.3 147 1-156 6-164 (256)
120 3pqc_A Probable GTP-binding pr 99.9 4.9E-24 1.7E-28 153.6 12.5 149 1-159 28-194 (195)
121 4dhe_A Probable GTP-binding pr 99.9 4.1E-24 1.4E-28 157.5 9.4 156 1-160 34-212 (223)
122 3k53_A Ferrous iron transport 99.9 1E-23 3.5E-28 160.0 10.6 150 1-158 8-165 (271)
123 3i8s_A Ferrous iron transport 99.9 2.6E-24 8.8E-29 163.4 6.5 148 1-157 8-167 (274)
124 1nrj_B SR-beta, signal recogni 99.9 2.8E-24 9.7E-29 157.9 4.9 136 1-145 17-170 (218)
125 1wf3_A GTP-binding protein; GT 99.9 1.3E-23 4.4E-28 161.4 8.5 148 1-157 12-171 (301)
126 2e87_A Hypothetical protein PH 99.9 1.5E-22 5.3E-27 159.1 14.8 156 1-161 172-338 (357)
127 3gee_A MNME, tRNA modification 99.9 2.4E-23 8.3E-28 168.5 9.3 151 1-158 238-397 (476)
128 2hjg_A GTP-binding protein ENG 99.9 5.1E-23 1.8E-27 165.8 11.0 154 1-160 180-350 (436)
129 4dcu_A GTP-binding protein ENG 99.9 9.1E-23 3.1E-27 165.2 11.3 155 1-161 200-371 (456)
130 1lnz_A SPO0B-associated GTP-bi 99.9 6.4E-23 2.2E-27 159.7 9.4 154 1-159 163-330 (342)
131 1mky_A Probable GTP-binding pr 99.9 3.8E-22 1.3E-26 160.9 11.0 147 1-159 6-166 (439)
132 3qq5_A Small GTP-binding prote 99.9 6.9E-23 2.4E-27 163.4 4.5 151 1-160 39-197 (423)
133 1xzp_A Probable tRNA modificat 99.9 2.5E-22 8.6E-27 162.7 7.8 148 1-159 248-405 (482)
134 2hjg_A GTP-binding protein ENG 99.9 1.5E-22 5.2E-27 163.1 5.8 148 1-158 8-164 (436)
135 1ega_A Protein (GTP-binding pr 99.9 5.5E-22 1.9E-26 152.4 7.8 151 1-157 13-173 (301)
136 2qtf_A Protein HFLX, GTP-bindi 99.9 1.3E-20 4.4E-25 148.0 15.6 157 1-160 184-355 (364)
137 3sjy_A Translation initiation 99.9 3.3E-20 1.1E-24 148.0 17.0 154 1-157 13-190 (403)
138 3lxx_A GTPase IMAP family memb 99.9 9.3E-21 3.2E-25 141.1 12.9 154 1-158 34-213 (239)
139 1s0u_A EIF-2-gamma, translatio 99.8 2.1E-20 7.3E-25 149.4 15.3 152 1-158 13-197 (408)
140 3cb4_D GTP-binding protein LEP 99.8 9.6E-21 3.3E-25 156.8 13.3 152 1-158 9-181 (599)
141 1wb1_A Translation elongation 99.8 1.2E-20 4.2E-25 153.4 13.0 149 1-158 24-188 (482)
142 2ywe_A GTP-binding protein LEP 99.8 2.4E-20 8.3E-25 154.2 14.5 152 1-158 11-183 (600)
143 2xtp_A GTPase IMAP family memb 99.8 5.2E-21 1.8E-25 144.2 9.1 156 1-160 27-209 (260)
144 3geh_A MNME, tRNA modification 99.8 2E-21 6.8E-26 156.8 6.7 147 1-159 229-384 (462)
145 3lxw_A GTPase IMAP family memb 99.8 1.4E-20 4.9E-25 140.8 10.9 160 1-160 26-209 (247)
146 3t5d_A Septin-7; GTP-binding p 99.8 2.2E-21 7.4E-26 147.4 6.5 152 1-156 13-201 (274)
147 3p26_A Elongation factor 1 alp 99.8 7.8E-21 2.7E-25 154.9 9.9 147 1-149 38-228 (483)
148 1kk1_A EIF2gamma; initiation o 99.8 2.5E-20 8.7E-25 149.0 11.9 152 1-158 15-199 (410)
149 3j2k_7 ERF3, eukaryotic polype 99.8 1.8E-20 6.1E-25 150.9 10.7 148 1-151 22-217 (439)
150 2elf_A Protein translation elo 99.8 8.9E-21 3.1E-25 149.3 8.6 144 1-160 26-181 (370)
151 2qag_A Septin-2, protein NEDD5 99.8 9.7E-22 3.3E-26 154.5 2.6 159 1-165 42-239 (361)
152 3tr5_A RF-3, peptide chain rel 99.8 1.3E-20 4.4E-25 154.4 8.6 111 1-115 18-148 (528)
153 1mky_A Probable GTP-binding pr 99.8 4.9E-20 1.7E-24 148.6 11.7 154 1-160 185-356 (439)
154 4dcu_A GTP-binding protein ENG 99.8 5E-21 1.7E-25 155.1 5.7 148 1-158 28-184 (456)
155 1g7s_A Translation initiation 99.8 1.3E-19 4.6E-24 150.1 13.4 154 1-161 10-220 (594)
156 3izy_P Translation initiation 99.8 3.6E-22 1.2E-26 163.1 -2.5 152 1-157 9-166 (537)
157 2ged_A SR-beta, signal recogni 99.8 2.8E-20 9.6E-25 133.9 7.2 108 1-117 53-172 (193)
158 2c78_A Elongation factor TU-A; 99.8 1.6E-20 5.4E-25 150.0 6.3 141 1-145 16-180 (405)
159 1d2e_A Elongation factor TU (E 99.8 4.2E-20 1.4E-24 147.1 8.7 153 1-157 8-193 (397)
160 1zun_B Sulfate adenylate trans 99.8 5.1E-20 1.7E-24 148.3 9.2 148 1-151 29-216 (434)
161 1cip_A Protein (guanine nucleo 99.8 1.1E-19 3.8E-24 141.9 10.3 133 26-162 178-347 (353)
162 1jny_A EF-1-alpha, elongation 99.8 3.2E-20 1.1E-24 149.4 6.5 150 1-151 11-205 (435)
163 3izq_1 HBS1P, elongation facto 99.8 2.3E-20 7.9E-25 155.4 4.2 146 1-149 172-362 (611)
164 3ohm_A Guanine nucleotide-bind 99.8 3.1E-19 1.1E-23 137.6 8.7 144 14-161 133-320 (327)
165 2aka_B Dynamin-1; fusion prote 99.8 1.1E-19 3.7E-24 139.5 6.1 109 45-156 125-250 (299)
166 1r5b_A Eukaryotic peptide chai 99.8 2.1E-20 7.2E-25 151.6 1.4 150 1-150 48-243 (467)
167 1pui_A ENGB, probable GTP-bind 99.8 1E-18 3.6E-23 127.3 9.1 148 1-157 31-197 (210)
168 1zcb_A G alpha I/13; GTP-bindi 99.8 8E-19 2.7E-23 137.5 9.0 146 13-162 166-356 (362)
169 1zo1_I IF2, translation initia 99.8 6.4E-21 2.2E-25 154.6 -3.3 146 1-155 9-163 (501)
170 1azs_C GS-alpha; complex (lyas 99.8 5.3E-18 1.8E-22 134.0 13.2 125 37-163 211-389 (402)
171 2xtz_A Guanine nucleotide-bind 99.8 2.1E-18 7.2E-23 134.7 10.6 121 43-163 181-349 (354)
172 3avx_A Elongation factor TS, e 99.8 4E-19 1.4E-23 154.1 7.0 152 1-156 301-483 (1289)
173 1f60_A Elongation factor EEF1A 99.8 1.1E-19 3.6E-24 147.1 3.3 146 1-149 12-202 (458)
174 2dy1_A Elongation factor G; tr 99.8 3.2E-18 1.1E-22 144.0 12.2 110 1-114 14-139 (665)
175 4fid_A G protein alpha subunit 99.8 2E-18 6.8E-23 133.6 9.9 141 15-159 128-328 (340)
176 1udx_A The GTP-binding protein 99.8 4.4E-18 1.5E-22 135.4 11.8 157 1-161 162-327 (416)
177 3t34_A Dynamin-related protein 99.8 9.6E-19 3.3E-23 137.7 6.5 110 45-156 136-258 (360)
178 1u0l_A Probable GTPase ENGC; p 99.7 4.7E-19 1.6E-23 136.1 4.1 133 11-154 32-168 (301)
179 2j69_A Bacterial dynamin-like 99.7 1.4E-17 4.9E-22 140.7 13.0 113 46-161 175-327 (695)
180 3def_A T7I23.11 protein; chlor 99.7 5.6E-18 1.9E-22 127.8 8.8 119 1-121 41-171 (262)
181 2h5e_A Peptide chain release f 99.7 2.1E-17 7.1E-22 135.6 11.9 111 1-115 18-148 (529)
182 2qnr_A Septin-2, protein NEDD5 99.7 9.5E-19 3.2E-23 134.3 3.3 157 1-162 23-217 (301)
183 1dar_A EF-G, elongation factor 99.7 1.6E-17 5.5E-22 140.3 10.4 111 1-115 17-143 (691)
184 1jwy_B Dynamin A GTPase domain 99.7 3.3E-17 1.1E-21 126.6 10.7 112 45-159 131-262 (315)
185 3mca_A HBS1, elongation factor 99.7 6.6E-20 2.2E-24 152.3 -5.1 144 1-147 182-371 (592)
186 1h65_A Chloroplast outer envel 99.7 1.7E-17 5.8E-22 125.6 8.3 116 1-118 44-171 (270)
187 2rdo_7 EF-G, elongation factor 99.7 3.9E-16 1.3E-20 132.1 15.8 110 1-114 15-147 (704)
188 2xex_A Elongation factor G; GT 99.7 1.2E-16 4.1E-21 135.1 10.6 111 1-115 15-141 (693)
189 2qag_C Septin-7; cell cycle, c 99.7 2.4E-17 8.1E-22 131.3 5.3 151 1-156 36-224 (418)
190 1wxq_A GTP-binding protein; st 99.7 2.6E-17 8.9E-22 130.6 4.5 81 1-81 5-114 (397)
191 2wsm_A Hydrogenase expression/ 99.6 2.1E-16 7.3E-21 116.0 5.7 149 1-160 35-215 (221)
192 2x2e_A Dynamin-1; nitration, h 99.6 6E-17 2.1E-21 127.1 2.4 108 45-155 130-254 (353)
193 3vqt_A RF-3, peptide chain rel 99.6 2.5E-15 8.4E-20 123.8 11.2 109 1-114 36-165 (548)
194 1jal_A YCHF protein; nucleotid 99.6 1.6E-14 5.6E-19 112.7 14.0 140 1-142 7-240 (363)
195 3p32_A Probable GTPase RV1496/ 99.6 9.3E-17 3.2E-21 126.1 1.3 104 44-159 171-284 (355)
196 2hf9_A Probable hydrogenase ni 99.6 1.9E-17 6.3E-22 122.1 -4.1 59 101-159 164-224 (226)
197 2www_A Methylmalonic aciduria 99.6 1.4E-14 4.9E-19 113.2 9.7 104 44-159 166-279 (349)
198 2qpt_A EH domain-containing pr 99.5 8.5E-15 2.9E-19 120.7 7.7 109 1-115 70-232 (550)
199 1n0u_A EF-2, elongation factor 99.5 1.7E-14 5.8E-19 124.3 9.9 110 1-114 24-163 (842)
200 2dby_A GTP-binding protein; GD 99.5 3.8E-14 1.3E-18 111.2 9.6 147 1-149 6-252 (368)
201 3j25_A Tetracycline resistance 99.5 9.8E-15 3.4E-19 122.4 4.9 110 1-114 7-132 (638)
202 1yrb_A ATP(GTP)binding protein 99.5 6.7E-14 2.3E-18 105.2 8.3 111 45-158 109-256 (262)
203 2p67_A LAO/AO transport system 99.5 1.8E-14 6.2E-19 112.4 5.2 104 44-158 148-260 (341)
204 4a9a_A Ribosome-interacting GT 99.5 3E-13 1E-17 106.1 11.9 148 1-151 77-240 (376)
205 2yv5_A YJEQ protein; hydrolase 99.4 1.6E-13 5.5E-18 105.3 7.5 108 44-154 49-164 (302)
206 4fn5_A EF-G 1, elongation fact 99.4 2.3E-12 7.8E-17 109.4 14.1 110 1-114 18-150 (709)
207 3zvr_A Dynamin-1; hydrolase, D 99.4 2.3E-13 7.8E-18 115.0 7.4 108 46-156 151-275 (772)
208 2qm8_A GTPase/ATPase; G protei 99.4 1.3E-13 4.3E-18 107.4 5.1 104 44-158 147-260 (337)
209 3l82_B F-box only protein 4; T 99.3 1.2E-12 4E-17 93.7 4.7 103 53-158 110-222 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.2 5E-12 1.7E-16 99.6 5.3 82 1-82 27-130 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.9E-10 6.4E-15 90.8 13.3 80 1-80 25-127 (392)
212 3l2o_B F-box only protein 4; s 99.2 2.6E-11 8.7E-16 90.9 6.3 105 52-158 194-307 (312)
213 3h2y_A GTPase family protein; 99.1 7.8E-10 2.7E-14 87.0 10.0 96 54-156 55-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 4.4E-11 1.5E-15 94.1 -0.9 136 1-145 167-317 (369)
215 2j37_W Signal recognition part 99.0 1.6E-10 5.4E-15 94.0 2.1 102 44-156 183-310 (504)
216 3ec1_A YQEH GTPase; atnos1, at 98.9 3.2E-09 1.1E-13 83.6 7.5 96 54-156 57-159 (369)
217 3h2y_A GTPase family protein; 98.9 5.4E-11 1.9E-15 93.6 -3.9 131 1-139 165-310 (368)
218 1puj_A YLQF, conserved hypothe 98.8 1.4E-08 4.8E-13 77.0 7.4 102 49-160 3-107 (282)
219 2qag_B Septin-6, protein NEDD5 98.8 9.3E-09 3.2E-13 81.8 5.9 55 1-55 47-105 (427)
220 1tq4_A IIGP1, interferon-induc 98.7 1.7E-07 5.9E-12 74.5 12.5 152 1-160 74-254 (413)
221 3sop_A Neuronal-specific septi 98.6 1.9E-07 6.6E-12 70.3 8.3 132 1-137 7-178 (270)
222 3dm5_A SRP54, signal recogniti 98.6 1.2E-07 4.1E-12 75.8 6.8 86 45-140 183-274 (443)
223 3kl4_A SRP54, signal recogniti 98.4 1.4E-07 4.9E-12 75.3 2.8 91 44-146 179-277 (433)
224 2v3c_C SRP54, signal recogniti 98.4 1.2E-06 4.2E-11 70.1 8.0 84 44-138 180-271 (432)
225 1puj_A YLQF, conserved hypothe 98.3 2E-07 6.9E-12 70.6 3.1 52 1-56 125-176 (282)
226 3cnl_A YLQF, putative uncharac 98.3 1.5E-07 5.1E-12 70.6 1.3 53 1-57 104-156 (262)
227 1t9h_A YLOQ, probable GTPase E 98.3 2.5E-07 8.4E-12 70.8 2.1 89 60-151 78-169 (307)
228 3cnl_A YLQF, putative uncharac 98.3 4E-07 1.4E-11 68.3 3.1 93 52-155 4-97 (262)
229 1j8m_F SRP54, signal recogniti 98.2 2.2E-06 7.6E-11 65.3 6.7 92 44-148 180-280 (297)
230 3e70_C DPA, signal recognition 98.0 6.7E-06 2.3E-10 63.5 5.9 92 45-148 212-309 (328)
231 1f5n_A Interferon-induced guan 98.0 4E-06 1.4E-10 69.5 4.3 56 1-56 43-102 (592)
232 2rcn_A Probable GTPase ENGC; Y 98.0 1.4E-05 4.8E-10 62.3 6.7 84 65-152 127-212 (358)
233 3szr_A Interferon-induced GTP- 97.9 2.2E-05 7.5E-10 65.7 7.7 20 1-20 50-69 (608)
234 2yhs_A FTSY, cell division pro 97.7 2E-05 7E-10 63.8 2.8 84 45-139 376-472 (503)
235 1bif_A 6-phosphofructo-2-kinas 97.5 3.6E-06 1.2E-10 68.3 -3.1 94 1-96 44-147 (469)
236 3q5d_A Atlastin-1; G protein, 97.5 0.00011 3.8E-09 58.9 4.6 19 1-19 72-90 (447)
237 2xxa_A Signal recognition part 97.4 0.00022 7.4E-09 57.2 5.9 83 44-137 183-272 (433)
238 1zu4_A FTSY; GTPase, signal re 97.2 0.00027 9.2E-09 54.4 4.4 86 44-139 191-288 (320)
239 2rcn_A Probable GTPase ENGC; Y 97.2 0.00018 6.2E-09 56.1 2.9 21 1-21 220-240 (358)
240 1t9h_A YLOQ, probable GTPase E 97.1 5.1E-05 1.7E-09 58.0 -0.7 21 1-21 178-198 (307)
241 2ffh_A Protein (FFH); SRP54, s 97.1 0.0018 6.1E-08 51.7 8.0 86 44-139 180-271 (425)
242 2yv5_A YJEQ protein; hydrolase 97.1 0.00075 2.6E-08 51.5 5.2 17 1-17 170-186 (302)
243 1ye8_A Protein THEP1, hypothet 97.0 0.00025 8.6E-09 49.8 1.6 20 1-20 5-24 (178)
244 1kgd_A CASK, peripheral plasma 97.0 0.00025 8.6E-09 49.7 1.6 19 1-19 10-28 (180)
245 1lvg_A Guanylate kinase, GMP k 96.9 0.00031 1.1E-08 50.1 1.6 18 1-18 9-26 (198)
246 1zp6_A Hypothetical protein AT 96.8 0.00038 1.3E-08 49.1 1.6 19 1-19 14-32 (191)
247 3a00_A Guanylate kinase, GMP k 96.8 0.0004 1.4E-08 48.9 1.5 19 1-19 6-24 (186)
248 3tr0_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 49.4 1.6 19 1-19 12-30 (205)
249 1znw_A Guanylate kinase, GMP k 96.8 0.00043 1.5E-08 49.6 1.6 20 1-20 25-44 (207)
250 4dzz_A Plasmid partitioning pr 96.7 0.0029 1E-07 44.9 5.9 86 44-136 75-162 (206)
251 4gp7_A Metallophosphoesterase; 96.7 0.00042 1.4E-08 48.2 1.4 17 1-17 14-30 (171)
252 1s96_A Guanylate kinase, GMP k 96.7 0.0005 1.7E-08 49.9 1.6 20 1-20 21-40 (219)
253 1z6g_A Guanylate kinase; struc 96.7 0.00055 1.9E-08 49.6 1.6 20 1-20 28-47 (218)
254 3tif_A Uncharacterized ABC tra 96.6 0.00063 2.2E-08 49.9 1.7 19 1-19 36-54 (235)
255 1htw_A HI0065; nucleotide-bind 96.6 0.00067 2.3E-08 46.6 1.6 20 1-20 38-57 (158)
256 3ney_A 55 kDa erythrocyte memb 96.6 0.00071 2.4E-08 48.2 1.6 19 1-19 24-42 (197)
257 2pcj_A ABC transporter, lipopr 96.6 0.00065 2.2E-08 49.5 1.5 19 1-19 35-53 (224)
258 3c8u_A Fructokinase; YP_612366 96.6 0.00058 2E-08 49.0 1.1 19 1-19 27-45 (208)
259 2onk_A Molybdate/tungstate ABC 96.6 0.0008 2.7E-08 49.5 1.9 19 1-19 29-47 (240)
260 3ec2_A DNA replication protein 96.6 0.00078 2.7E-08 47.1 1.7 19 1-19 43-61 (180)
261 3tau_A Guanylate kinase, GMP k 96.6 0.00075 2.6E-08 48.4 1.6 20 1-20 13-32 (208)
262 2bdt_A BH3686; alpha-beta prot 96.5 0.0008 2.7E-08 47.4 1.6 18 1-18 7-24 (189)
263 1sgw_A Putative ABC transporte 96.5 0.00086 2.9E-08 48.5 1.7 19 1-19 40-58 (214)
264 1b0u_A Histidine permease; ABC 96.5 0.00089 3E-08 50.0 1.7 19 1-19 37-55 (262)
265 1kag_A SKI, shikimate kinase I 96.5 0.00093 3.2E-08 46.2 1.6 19 1-19 9-27 (173)
266 3gfo_A Cobalt import ATP-bindi 96.5 0.00093 3.2E-08 50.2 1.7 20 1-20 39-58 (275)
267 1fnn_A CDC6P, cell division co 96.5 0.0034 1.2E-07 49.1 5.0 20 1-20 49-68 (389)
268 1g6h_A High-affinity branched- 96.5 0.00092 3.2E-08 49.7 1.7 20 1-20 38-57 (257)
269 2cbz_A Multidrug resistance-as 96.5 0.00095 3.3E-08 49.0 1.7 19 1-19 36-54 (237)
270 4g1u_C Hemin import ATP-bindin 96.4 0.00099 3.4E-08 49.8 1.7 20 1-20 42-61 (266)
271 3co5_A Putative two-component 96.4 0.0035 1.2E-07 42.1 4.3 19 1-19 32-50 (143)
272 1sxj_E Activator 1 40 kDa subu 96.4 0.0066 2.3E-07 47.0 6.4 19 1-19 41-59 (354)
273 2j41_A Guanylate kinase; GMP, 96.4 0.001 3.4E-08 47.4 1.6 20 1-20 11-30 (207)
274 2olj_A Amino acid ABC transpor 96.4 0.001 3.6E-08 49.6 1.7 19 1-19 55-73 (263)
275 2pze_A Cystic fibrosis transme 96.4 0.0011 3.6E-08 48.5 1.7 20 1-20 39-58 (229)
276 1vpl_A ABC transporter, ATP-bi 96.4 0.0011 3.6E-08 49.4 1.7 19 1-19 46-64 (256)
277 2qor_A Guanylate kinase; phosp 96.4 0.0011 3.9E-08 47.3 1.8 19 1-19 17-35 (204)
278 1ji0_A ABC transporter; ATP bi 96.4 0.0011 3.7E-08 48.9 1.7 19 1-19 37-55 (240)
279 4eun_A Thermoresistant glucoki 96.4 0.0011 3.7E-08 47.2 1.6 19 1-19 34-52 (200)
280 2qi9_C Vitamin B12 import ATP- 96.4 0.0011 3.8E-08 49.0 1.7 19 1-19 31-49 (249)
281 1mv5_A LMRA, multidrug resista 96.4 0.0011 3.8E-08 48.8 1.7 19 1-19 33-51 (243)
282 2i3b_A HCR-ntpase, human cance 96.4 0.0011 3.8E-08 46.9 1.6 19 1-19 6-24 (189)
283 2d2e_A SUFC protein; ABC-ATPas 96.4 0.0012 4.1E-08 48.9 1.8 19 1-19 34-52 (250)
284 2ff7_A Alpha-hemolysin translo 96.4 0.0011 3.9E-08 48.9 1.7 19 1-19 40-58 (247)
285 3lw7_A Adenylate kinase relate 96.4 0.0012 4E-08 45.5 1.7 16 1-16 6-21 (179)
286 1u0l_A Probable GTPase ENGC; p 96.4 0.0014 4.8E-08 49.9 2.2 21 1-21 174-194 (301)
287 2bbw_A Adenylate kinase 4, AK4 96.3 0.0013 4.4E-08 48.4 1.9 17 1-17 32-48 (246)
288 2zu0_C Probable ATP-dependent 96.3 0.0013 4.5E-08 49.2 1.9 19 1-19 51-69 (267)
289 2eyu_A Twitching motility prot 96.3 0.0012 4.1E-08 49.3 1.6 19 1-19 30-48 (261)
290 1ly1_A Polynucleotide kinase; 96.3 0.0013 4.6E-08 45.6 1.8 18 1-18 7-24 (181)
291 2ihy_A ABC transporter, ATP-bi 96.3 0.0012 4.2E-08 49.7 1.7 20 1-20 52-71 (279)
292 1ex7_A Guanylate kinase; subst 96.3 0.0014 4.8E-08 46.3 1.8 19 1-19 6-24 (186)
293 3cwq_A Para family chromosome 96.3 0.02 6.9E-07 40.9 8.0 86 44-136 67-153 (209)
294 3kb2_A SPBC2 prophage-derived 96.3 0.0014 4.7E-08 45.2 1.7 19 1-19 6-24 (173)
295 2chg_A Replication factor C sm 96.3 0.0051 1.7E-07 43.8 4.8 19 1-19 43-61 (226)
296 2ghi_A Transport protein; mult 96.3 0.0013 4.5E-08 49.0 1.7 19 1-19 51-69 (260)
297 2nq2_C Hypothetical ABC transp 96.3 0.0013 4.5E-08 48.8 1.7 20 1-20 36-55 (253)
298 3b85_A Phosphate starvation-in 96.3 0.00088 3E-08 48.2 0.6 19 1-19 27-45 (208)
299 2yz2_A Putative ABC transporte 96.3 0.0014 4.7E-08 49.0 1.7 19 1-19 38-56 (266)
300 2ixe_A Antigen peptide transpo 96.3 0.0014 4.7E-08 49.2 1.7 19 1-19 50-68 (271)
301 3asz_A Uridine kinase; cytidin 96.3 0.0012 4.2E-08 47.2 1.4 19 1-19 11-29 (211)
302 1np6_A Molybdopterin-guanine d 96.3 0.0014 4.9E-08 45.7 1.6 19 1-19 11-29 (174)
303 1knq_A Gluconate kinase; ALFA/ 96.3 0.0014 4.8E-08 45.4 1.6 18 1-18 13-30 (175)
304 2ehv_A Hypothetical protein PH 96.3 0.0015 5.2E-08 47.9 1.8 18 1-18 35-52 (251)
305 4a74_A DNA repair and recombin 96.2 0.0013 4.5E-08 47.5 1.4 21 1-21 30-50 (231)
306 2pjz_A Hypothetical protein ST 96.2 0.0018 6E-08 48.4 1.7 20 1-20 35-54 (263)
307 3t61_A Gluconokinase; PSI-biol 96.1 0.0017 5.9E-08 46.2 1.6 19 1-19 23-41 (202)
308 1qhx_A CPT, protein (chloramph 96.1 0.002 6.9E-08 44.7 1.8 19 1-19 8-26 (178)
309 2v9p_A Replication protein E1; 96.1 0.0017 5.9E-08 49.4 1.5 19 1-19 131-149 (305)
310 3aez_A Pantothenate kinase; tr 96.1 0.0019 6.4E-08 49.5 1.6 19 1-19 95-113 (312)
311 3lnc_A Guanylate kinase, GMP k 96.1 0.0012 4E-08 48.2 0.5 19 1-19 32-51 (231)
312 3ea0_A ATPase, para family; al 96.1 0.056 1.9E-06 39.3 9.5 89 45-141 119-207 (245)
313 3u61_B DNA polymerase accessor 96.1 0.088 3E-06 40.1 11.0 18 2-19 54-71 (324)
314 3uie_A Adenylyl-sulfate kinase 96.1 0.002 7E-08 45.8 1.6 19 1-19 30-48 (200)
315 2kjq_A DNAA-related protein; s 96.0 0.0012 4.1E-08 44.8 0.3 20 1-20 41-60 (149)
316 3te6_A Regulatory protein SIR3 96.0 0.015 5E-07 44.6 6.2 19 1-19 50-68 (318)
317 3vaa_A Shikimate kinase, SK; s 96.0 0.0023 8E-08 45.4 1.6 18 1-18 30-47 (199)
318 2x8a_A Nuclear valosin-contain 96.0 0.0022 7.6E-08 48.1 1.6 19 1-19 49-67 (274)
319 1nks_A Adenylate kinase; therm 96.0 0.0023 7.9E-08 44.9 1.6 18 1-18 6-23 (194)
320 3tui_C Methionine import ATP-b 96.0 0.0025 8.7E-08 49.7 1.9 20 1-20 59-78 (366)
321 1z47_A CYSA, putative ABC-tran 96.0 0.0025 8.6E-08 49.6 1.8 20 1-20 46-65 (355)
322 3fvq_A Fe(3+) IONS import ATP- 96.0 0.0023 7.9E-08 49.9 1.6 20 1-20 35-54 (359)
323 2bbs_A Cystic fibrosis transme 96.0 0.0022 7.5E-08 48.6 1.4 19 1-19 69-87 (290)
324 3jvv_A Twitching mobility prot 95.9 0.0023 7.9E-08 49.9 1.6 19 1-19 128-146 (356)
325 1kht_A Adenylate kinase; phosp 95.9 0.0027 9.3E-08 44.4 1.8 18 1-18 8-25 (192)
326 2yyz_A Sugar ABC transporter, 95.9 0.0027 9.4E-08 49.5 1.8 19 1-19 34-52 (359)
327 2it1_A 362AA long hypothetical 95.9 0.0028 9.6E-08 49.5 1.9 20 1-20 34-53 (362)
328 1ixz_A ATP-dependent metallopr 95.9 0.0026 9E-08 46.9 1.6 19 1-19 54-72 (254)
329 1jjv_A Dephospho-COA kinase; P 95.9 0.0029 9.9E-08 45.1 1.8 18 1-18 7-24 (206)
330 1xjc_A MOBB protein homolog; s 95.9 0.003 1E-07 43.8 1.8 19 1-19 9-27 (169)
331 2rhm_A Putative kinase; P-loop 95.9 0.0026 9E-08 44.6 1.5 18 1-18 10-27 (193)
332 3rlf_A Maltose/maltodextrin im 95.9 0.0029 1E-07 49.7 1.9 20 1-20 34-53 (381)
333 2jeo_A Uridine-cytidine kinase 95.9 0.0028 9.5E-08 46.6 1.6 18 1-18 30-47 (245)
334 3b9q_A Chloroplast SRP recepto 95.9 0.0028 9.5E-08 48.3 1.6 82 47-139 186-280 (302)
335 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0033 1.1E-07 42.6 1.8 17 1-17 28-44 (149)
336 3cm0_A Adenylate kinase; ATP-b 95.8 0.0031 1.1E-07 44.0 1.8 18 1-18 9-26 (186)
337 3kta_A Chromosome segregation 95.8 0.0029 9.8E-08 44.1 1.6 18 1-18 31-48 (182)
338 1g29_1 MALK, maltose transport 95.8 0.003 1E-07 49.5 1.8 20 1-20 34-53 (372)
339 1in4_A RUVB, holliday junction 95.8 0.0028 9.5E-08 48.9 1.6 19 1-19 56-74 (334)
340 1cke_A CK, MSSA, protein (cyti 95.8 0.0029 1E-07 45.7 1.6 18 1-18 10-27 (227)
341 2jaq_A Deoxyguanosine kinase; 95.8 0.003 1E-07 44.7 1.6 18 1-18 5-22 (205)
342 1v43_A Sugar-binding transport 95.8 0.0032 1.1E-07 49.4 1.9 19 1-19 42-60 (372)
343 2if2_A Dephospho-COA kinase; a 95.8 0.0028 9.6E-08 45.1 1.4 18 1-18 6-23 (204)
344 1rj9_A FTSY, signal recognitio 95.8 0.0029 1E-07 48.2 1.6 84 46-139 186-281 (304)
345 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0028 9.6E-08 48.9 1.4 20 1-20 176-195 (330)
346 1jbk_A CLPB protein; beta barr 95.8 0.0033 1.1E-07 43.7 1.6 19 1-19 48-66 (195)
347 2gza_A Type IV secretion syste 95.7 0.0031 1.1E-07 49.3 1.5 19 1-19 180-198 (361)
348 2qt1_A Nicotinamide riboside k 95.7 0.0034 1.2E-07 44.8 1.6 19 1-19 26-44 (207)
349 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.044 1.5E-06 42.0 7.9 19 1-19 50-68 (322)
350 2ewv_A Twitching motility prot 95.7 0.0033 1.1E-07 49.4 1.5 19 1-19 141-159 (372)
351 2ze6_A Isopentenyl transferase 95.7 0.0037 1.2E-07 46.3 1.6 18 1-18 6-23 (253)
352 3trf_A Shikimate kinase, SK; a 95.7 0.004 1.4E-07 43.5 1.8 18 1-18 10-27 (185)
353 3nh6_A ATP-binding cassette SU 95.7 0.0022 7.4E-08 49.0 0.4 19 1-19 85-103 (306)
354 1p9r_A General secretion pathw 95.7 0.0035 1.2E-07 50.0 1.6 19 1-19 172-190 (418)
355 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0037 1.2E-07 45.2 1.6 19 1-19 28-46 (235)
356 2f1r_A Molybdopterin-guanine d 95.7 0.0014 4.9E-08 45.6 -0.6 19 1-19 7-25 (171)
357 1via_A Shikimate kinase; struc 95.6 0.0042 1.4E-07 43.0 1.8 18 1-18 9-26 (175)
358 2oap_1 GSPE-2, type II secreti 95.6 0.0036 1.2E-07 51.2 1.6 20 1-20 265-284 (511)
359 2plr_A DTMP kinase, probable t 95.6 0.0043 1.5E-07 44.2 1.8 18 1-18 9-26 (213)
360 1lw7_A Transcriptional regulat 95.6 0.003 1E-07 49.4 1.0 19 1-19 175-193 (365)
361 3d31_A Sulfate/molybdate ABC t 95.6 0.0026 8.7E-08 49.5 0.6 20 1-20 31-50 (348)
362 1iy2_A ATP-dependent metallopr 95.6 0.004 1.4E-07 46.7 1.6 19 1-19 78-96 (278)
363 3iij_A Coilin-interacting nucl 95.6 0.0044 1.5E-07 43.1 1.8 18 1-18 16-33 (180)
364 1gvn_B Zeta; postsegregational 95.6 0.0034 1.2E-07 47.4 1.3 18 1-18 38-55 (287)
365 1tev_A UMP-CMP kinase; ploop, 95.6 0.0045 1.5E-07 43.4 1.8 18 1-18 8-25 (196)
366 3fb4_A Adenylate kinase; psych 95.6 0.0043 1.5E-07 44.5 1.8 18 1-18 5-22 (216)
367 1rz3_A Hypothetical protein rb 95.6 0.0038 1.3E-07 44.4 1.4 18 1-18 27-44 (201)
368 1sq5_A Pantothenate kinase; P- 95.6 0.0037 1.3E-07 47.7 1.4 19 1-19 85-103 (308)
369 3dl0_A Adenylate kinase; phosp 95.6 0.0045 1.5E-07 44.4 1.8 18 1-18 5-22 (216)
370 2yvu_A Probable adenylyl-sulfa 95.6 0.0044 1.5E-07 43.4 1.6 19 1-19 18-36 (186)
371 3sr0_A Adenylate kinase; phosp 95.5 0.0048 1.6E-07 44.3 1.8 18 1-18 5-22 (206)
372 3tqc_A Pantothenate kinase; bi 95.5 0.0046 1.6E-07 47.5 1.6 18 1-18 97-114 (321)
373 3pfi_A Holliday junction ATP-d 95.5 0.019 6.6E-07 44.0 5.2 19 1-19 60-78 (338)
374 1y63_A LMAJ004144AAA protein; 95.5 0.0051 1.7E-07 43.1 1.8 19 1-19 15-33 (184)
375 3gd7_A Fusion complex of cysti 95.5 0.0046 1.6E-07 48.8 1.6 19 1-19 52-70 (390)
376 2og2_A Putative signal recogni 95.5 0.0047 1.6E-07 48.2 1.6 82 47-139 243-337 (359)
377 4ido_A Atlastin-1; GTPase, GTP 95.5 0.016 5.4E-07 46.5 4.6 17 1-17 72-88 (457)
378 2w58_A DNAI, primosome compone 95.4 0.0051 1.7E-07 43.6 1.6 20 1-20 59-78 (202)
379 1n0w_A DNA repair protein RAD5 95.4 0.0052 1.8E-07 44.7 1.6 19 1-19 29-47 (243)
380 2cdn_A Adenylate kinase; phosp 95.4 0.0057 2E-07 43.4 1.8 18 1-18 25-42 (201)
381 2cvh_A DNA repair and recombin 95.4 0.0052 1.8E-07 44.0 1.6 18 1-18 25-42 (220)
382 3umf_A Adenylate kinase; rossm 95.4 0.0059 2E-07 44.1 1.8 18 1-18 34-51 (217)
383 1oxx_K GLCV, glucose, ABC tran 95.4 0.0025 8.6E-08 49.6 -0.1 20 1-20 36-55 (353)
384 1zd8_A GTP:AMP phosphotransfer 95.4 0.0053 1.8E-07 44.5 1.6 18 1-18 12-29 (227)
385 1cr0_A DNA primase/helicase; R 95.4 0.0047 1.6E-07 46.7 1.4 20 1-20 40-59 (296)
386 3end_A Light-independent proto 95.4 0.17 5.8E-06 38.2 10.1 85 44-137 156-242 (307)
387 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0059 2E-07 45.4 1.8 18 1-18 9-26 (260)
388 1lv7_A FTSH; alpha/beta domain 95.4 0.0054 1.9E-07 45.3 1.6 19 1-19 50-68 (257)
389 2c95_A Adenylate kinase 1; tra 95.4 0.0055 1.9E-07 43.1 1.6 18 1-18 14-31 (196)
390 1wcv_1 SOJ, segregation protei 95.4 0.052 1.8E-06 40.0 7.0 68 44-114 111-182 (257)
391 2v54_A DTMP kinase, thymidylat 95.4 0.0061 2.1E-07 43.2 1.8 19 1-19 9-27 (204)
392 1aky_A Adenylate kinase; ATP:A 95.3 0.0061 2.1E-07 43.9 1.8 18 1-18 9-26 (220)
393 2pbr_A DTMP kinase, thymidylat 95.3 0.0061 2.1E-07 42.7 1.7 18 1-18 5-22 (195)
394 1qhl_A Protein (cell division 95.3 0.0029 9.8E-08 46.1 0.0 21 1-21 32-52 (227)
395 2z0h_A DTMP kinase, thymidylat 95.3 0.0062 2.1E-07 42.8 1.8 19 1-19 5-23 (197)
396 1e6c_A Shikimate kinase; phosp 95.3 0.0061 2.1E-07 41.9 1.7 18 1-18 7-24 (173)
397 3bos_A Putative DNA replicatio 95.3 0.0057 1.9E-07 44.3 1.6 19 1-19 57-75 (242)
398 2bwj_A Adenylate kinase 5; pho 95.3 0.0059 2E-07 43.0 1.6 18 1-18 17-34 (199)
399 2pez_A Bifunctional 3'-phospho 95.3 0.0061 2.1E-07 42.3 1.6 18 1-18 10-27 (179)
400 1nij_A Hypothetical protein YJ 95.3 0.0037 1.3E-07 47.9 0.5 20 1-20 9-28 (318)
401 2p65_A Hypothetical protein PF 95.3 0.0041 1.4E-07 43.1 0.7 19 1-19 48-66 (187)
402 1zak_A Adenylate kinase; ATP:A 95.3 0.006 2E-07 44.0 1.5 18 1-18 10-27 (222)
403 2wwf_A Thymidilate kinase, put 95.3 0.006 2E-07 43.5 1.5 18 1-18 15-32 (212)
404 2vp4_A Deoxynucleoside kinase; 95.3 0.0047 1.6E-07 45.0 1.0 19 1-19 25-43 (230)
405 3qf7_A RAD50; ABC-ATPase, ATPa 95.3 0.0064 2.2E-07 47.6 1.8 17 1-17 28-44 (365)
406 2iyv_A Shikimate kinase, SK; t 95.3 0.0068 2.3E-07 42.3 1.8 18 1-18 7-24 (184)
407 1gtv_A TMK, thymidylate kinase 95.2 0.0022 7.4E-08 45.9 -0.9 18 1-18 5-22 (214)
408 2pt5_A Shikimate kinase, SK; a 95.2 0.0069 2.3E-07 41.5 1.7 18 1-18 5-22 (168)
409 1ukz_A Uridylate kinase; trans 95.2 0.007 2.4E-07 42.9 1.8 18 1-18 20-37 (203)
410 2xb4_A Adenylate kinase; ATP-b 95.2 0.0071 2.4E-07 43.8 1.8 18 1-18 5-22 (223)
411 4e22_A Cytidylate kinase; P-lo 95.2 0.0072 2.5E-07 44.7 1.8 17 1-17 32-48 (252)
412 1odf_A YGR205W, hypothetical 3 95.2 0.0068 2.3E-07 45.9 1.6 18 1-18 36-53 (290)
413 1qf9_A UMP/CMP kinase, protein 95.2 0.0067 2.3E-07 42.4 1.5 18 1-18 11-28 (194)
414 1e4v_A Adenylate kinase; trans 95.2 0.0067 2.3E-07 43.5 1.5 18 1-18 5-22 (214)
415 1nn5_A Similar to deoxythymidy 95.1 0.0068 2.3E-07 43.3 1.5 18 1-18 14-31 (215)
416 3tlx_A Adenylate kinase 2; str 95.1 0.0077 2.6E-07 44.2 1.8 18 1-18 34-51 (243)
417 2r62_A Cell division protease 95.1 0.0094 3.2E-07 44.2 2.3 19 1-19 49-67 (268)
418 2npi_A Protein CLP1; CLP1-PCF1 95.1 0.0063 2.2E-07 49.1 1.4 19 1-19 143-161 (460)
419 2vli_A Antibiotic resistance p 95.0 0.005 1.7E-07 42.8 0.5 18 1-18 10-27 (183)
420 3ozx_A RNAse L inhibitor; ATP 95.0 0.0078 2.7E-07 49.6 1.7 20 1-20 30-49 (538)
421 2p5t_B PEZT; postsegregational 95.0 0.0045 1.5E-07 45.8 0.2 18 1-18 37-54 (253)
422 1m7g_A Adenylylsulfate kinase; 95.0 0.0085 2.9E-07 42.9 1.6 18 1-18 30-47 (211)
423 1yqt_A RNAse L inhibitor; ATP- 95.0 0.009 3.1E-07 49.2 1.9 20 1-20 52-71 (538)
424 1njg_A DNA polymerase III subu 94.9 0.0084 2.9E-07 43.2 1.6 19 1-19 50-68 (250)
425 3qks_A DNA double-strand break 94.9 0.0096 3.3E-07 42.5 1.8 17 1-17 28-44 (203)
426 2obl_A ESCN; ATPase, hydrolase 94.9 0.0079 2.7E-07 46.7 1.4 20 1-20 76-95 (347)
427 1tue_A Replication protein E1; 94.9 0.0062 2.1E-07 43.6 0.7 18 1-18 63-80 (212)
428 1zuh_A Shikimate kinase; alpha 94.9 0.0096 3.3E-07 40.8 1.7 18 1-18 12-29 (168)
429 1svm_A Large T antigen; AAA+ f 94.9 0.0087 3E-07 47.0 1.6 18 1-18 174-191 (377)
430 4eaq_A DTMP kinase, thymidylat 94.9 0.0092 3.1E-07 43.5 1.6 19 1-19 31-49 (229)
431 3h4m_A Proteasome-activating n 94.9 0.0088 3E-07 44.8 1.5 19 1-19 56-74 (285)
432 3be4_A Adenylate kinase; malar 94.9 0.0092 3.1E-07 42.9 1.6 18 1-18 10-27 (217)
433 3euj_A Chromosome partition pr 94.9 0.009 3.1E-07 48.4 1.6 18 1-18 34-51 (483)
434 3j16_B RLI1P; ribosome recycli 94.8 0.0098 3.4E-07 49.7 1.9 20 1-20 108-127 (608)
435 3b9p_A CG5977-PA, isoform A; A 94.8 0.009 3.1E-07 45.0 1.5 19 1-19 59-77 (297)
436 1l8q_A Chromosomal replication 94.8 0.0093 3.2E-07 45.6 1.5 19 1-19 42-60 (324)
437 2qz4_A Paraplegin; AAA+, SPG7, 94.8 0.01 3.5E-07 43.7 1.7 19 1-19 44-62 (262)
438 3nwj_A ATSK2; P loop, shikimat 94.8 0.01 3.4E-07 43.9 1.6 18 1-18 53-70 (250)
439 1ltq_A Polynucleotide kinase; 94.8 0.011 3.8E-07 44.7 1.8 18 1-18 7-24 (301)
440 1ak2_A Adenylate kinase isoenz 94.8 0.011 3.9E-07 43.0 1.8 18 1-18 21-38 (233)
441 1nlf_A Regulatory protein REPA 94.8 0.0092 3.2E-07 44.7 1.4 18 1-18 35-52 (279)
442 1vht_A Dephospho-COA kinase; s 94.7 0.011 3.7E-07 42.5 1.7 18 1-18 9-26 (218)
443 2ph1_A Nucleotide-binding prot 94.7 0.11 3.9E-06 38.3 7.2 91 43-137 127-224 (262)
444 3t15_A Ribulose bisphosphate c 94.7 0.0099 3.4E-07 45.0 1.4 19 1-19 41-59 (293)
445 3cf0_A Transitional endoplasmi 94.7 0.011 3.7E-07 44.9 1.5 19 1-19 54-72 (301)
446 1uf9_A TT1252 protein; P-loop, 94.6 0.012 3.9E-07 41.6 1.6 19 1-19 13-31 (203)
447 3bk7_A ABC transporter ATP-bin 94.6 0.011 3.9E-07 49.3 1.7 20 1-20 122-141 (607)
448 3n70_A Transport activator; si 94.6 0.013 4.3E-07 39.3 1.6 20 1-20 29-48 (145)
449 1pzn_A RAD51, DNA repair and r 94.6 0.011 3.6E-07 46.0 1.4 20 1-20 136-155 (349)
450 2dr3_A UPF0273 protein PH0284; 94.6 0.012 4.1E-07 42.9 1.6 19 1-19 28-46 (247)
451 1sxj_C Activator 1 40 kDa subu 94.6 0.012 4E-07 45.5 1.5 20 1-20 51-70 (340)
452 2px0_A Flagellar biosynthesis 94.5 0.011 3.9E-07 44.8 1.4 86 44-139 182-273 (296)
453 3bk7_A ABC transporter ATP-bin 94.4 0.014 4.8E-07 48.8 1.9 21 1-21 387-407 (607)
454 2qby_A CDC6 homolog 1, cell di 94.4 0.012 4.2E-07 45.7 1.4 19 1-19 50-68 (386)
455 3ozx_A RNAse L inhibitor; ATP 94.4 0.014 4.7E-07 48.1 1.7 21 1-21 299-319 (538)
456 3b5x_A Lipid A export ATP-bind 94.4 0.014 4.9E-07 48.5 1.9 20 1-20 374-393 (582)
457 3qkt_A DNA double-strand break 94.4 0.015 5E-07 45.0 1.8 17 1-17 28-44 (339)
458 1yqt_A RNAse L inhibitor; ATP- 94.4 0.015 5.1E-07 47.9 1.9 20 1-20 317-336 (538)
459 3b60_A Lipid A export ATP-bind 94.4 0.013 4.4E-07 48.8 1.5 19 1-19 374-392 (582)
460 2dpy_A FLII, flagellum-specifi 94.3 0.013 4.5E-07 46.9 1.4 20 1-20 162-181 (438)
461 3r20_A Cytidylate kinase; stru 94.3 0.017 5.7E-07 42.3 1.8 18 1-18 14-31 (233)
462 1ofh_A ATP-dependent HSL prote 94.3 0.015 5.1E-07 43.9 1.6 19 1-19 55-73 (310)
463 3syl_A Protein CBBX; photosynt 94.3 0.014 4.8E-07 44.2 1.4 18 1-18 72-89 (309)
464 1vma_A Cell division protein F 94.3 0.016 5.4E-07 44.2 1.6 85 45-140 187-284 (306)
465 3zvl_A Bifunctional polynucleo 94.3 0.016 5.4E-07 46.2 1.7 19 1-19 263-281 (416)
466 1d2n_A N-ethylmaleimide-sensit 94.3 0.016 5.3E-07 43.2 1.6 19 1-19 69-87 (272)
467 2v1u_A Cell division control p 94.2 0.017 5.7E-07 45.0 1.8 19 1-19 49-67 (387)
468 3gmt_A Adenylate kinase; ssgci 94.2 0.018 6.2E-07 41.9 1.8 18 1-18 13-30 (230)
469 2grj_A Dephospho-COA kinase; T 94.2 0.017 5.9E-07 40.8 1.6 19 1-19 17-35 (192)
470 3j16_B RLI1P; ribosome recycli 94.1 0.019 6.4E-07 48.0 1.9 21 1-21 383-403 (608)
471 1uj2_A Uridine-cytidine kinase 94.1 0.018 6.2E-07 42.4 1.6 18 1-18 27-44 (252)
472 4fcw_A Chaperone protein CLPB; 94.1 0.018 6E-07 43.6 1.6 19 1-19 52-70 (311)
473 3ake_A Cytidylate kinase; CMP 94.0 0.019 6.4E-07 40.7 1.6 18 1-18 7-24 (208)
474 1g3q_A MIND ATPase, cell divis 94.0 0.35 1.2E-05 34.8 8.5 83 45-136 112-194 (237)
475 2qgz_A Helicase loader, putati 94.0 0.019 6.4E-07 43.8 1.6 19 1-19 157-175 (308)
476 1sxj_D Activator 1 41 kDa subu 94.0 0.019 6.3E-07 44.3 1.6 19 1-19 63-81 (353)
477 2f6r_A COA synthase, bifunctio 94.0 0.018 6.2E-07 43.3 1.4 18 1-18 80-97 (281)
478 3q9l_A Septum site-determining 93.9 0.07 2.4E-06 39.1 4.6 67 44-113 113-185 (260)
479 1w5s_A Origin recognition comp 93.9 0.026 8.8E-07 44.4 2.3 19 1-19 57-75 (412)
480 2z4s_A Chromosomal replication 93.8 0.02 6.7E-07 46.0 1.5 19 1-19 135-153 (440)
481 4b4t_K 26S protease regulatory 93.8 0.021 7.1E-07 45.6 1.7 19 1-19 211-229 (428)
482 2yl4_A ATP-binding cassette SU 93.8 0.013 4.5E-07 48.9 0.5 19 1-19 375-393 (595)
483 3eie_A Vacuolar protein sortin 93.8 0.02 6.9E-07 43.8 1.5 19 1-19 56-74 (322)
484 3k9g_A PF-32 protein; ssgcid, 93.8 0.18 6.1E-06 37.2 6.6 64 45-112 145-208 (267)
485 4a82_A Cystic fibrosis transme 93.8 0.012 4.3E-07 48.8 0.3 19 1-19 372-390 (578)
486 3qf4_B Uncharacterized ABC tra 93.7 0.015 5E-07 48.6 0.7 19 1-19 386-404 (598)
487 4b4t_M 26S protease regulatory 93.7 0.023 7.9E-07 45.4 1.7 19 1-19 220-238 (434)
488 3uk6_A RUVB-like 2; hexameric 93.7 0.021 7.1E-07 44.4 1.4 19 1-19 75-93 (368)
489 2qmh_A HPR kinase/phosphorylas 93.7 0.024 8.1E-07 40.4 1.5 20 1-20 39-58 (205)
490 1e69_A Chromosome segregation 93.7 0.015 5.3E-07 44.5 0.6 17 1-17 29-45 (322)
491 3crm_A TRNA delta(2)-isopenten 93.6 0.026 8.8E-07 43.3 1.8 18 1-18 10-27 (323)
492 3lda_A DNA repair protein RAD5 93.6 0.023 7.8E-07 45.0 1.5 18 1-18 183-200 (400)
493 2o5v_A DNA replication and rep 93.6 0.026 8.9E-07 44.0 1.8 18 1-18 31-48 (359)
494 1tf7_A KAIC; homohexamer, hexa 93.6 0.023 7.7E-07 46.7 1.5 17 1-17 44-60 (525)
495 3qf4_A ABC transporter, ATP-bi 93.6 0.017 5.9E-07 48.1 0.8 19 1-19 374-392 (587)
496 1hyq_A MIND, cell division inh 93.5 0.3 1E-05 35.8 7.5 83 45-136 111-193 (263)
497 3d3q_A TRNA delta(2)-isopenten 93.5 0.027 9.4E-07 43.5 1.8 18 1-18 12-29 (340)
498 4b4t_L 26S protease subunit RP 93.5 0.026 8.8E-07 45.2 1.7 19 1-19 220-238 (437)
499 1q3t_A Cytidylate kinase; nucl 93.5 0.026 9E-07 41.1 1.6 18 1-18 21-38 (236)
500 2dhr_A FTSH; AAA+ protein, hex 93.5 0.025 8.6E-07 46.1 1.5 19 1-19 69-87 (499)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.3e-41 Score=249.84 Aligned_cols=160 Identities=38% Similarity=0.700 Sum_probs=140.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+.+.+...+.+|++.++....+..++..+.+.||||+|+++|..++..+++.++++|+|||+++
T Consensus 18 lvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~ 97 (216)
T 4dkx_A 18 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97 (216)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC
T ss_pred EECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch
Confidence 58999999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+++|+.+..|+..+......++|++||+||+|+...+.+..+++..+++.++++|++|||++|.||+++|..|++.+...
T Consensus 98 ~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 98 VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999877778899999999999988889999999999999999999999999999999999999887654
No 2
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-37 Score=226.81 Aligned_cols=168 Identities=62% Similarity=0.975 Sum_probs=140.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 18 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~ 97 (223)
T 3cpj_B 18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK 97 (223)
T ss_dssp EESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......++|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|.+|.+.+.+.
T Consensus 98 ~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 98 SSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998876656899999999999987677888899999999999999999999999999999999999888
Q ss_pred hhhhhccc
Q 040835 161 VSKKALTA 168 (206)
Q Consensus 161 ~~~~~~~~ 168 (206)
...+....
T Consensus 178 ~~~~~~~~ 185 (223)
T 3cpj_B 178 VSKHQMDL 185 (223)
T ss_dssp C-------
T ss_pred hhhcccCc
Confidence 77766654
No 3
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9e-36 Score=217.66 Aligned_cols=167 Identities=51% Similarity=0.805 Sum_probs=152.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~ 92 (206)
T 2bcg_Y 13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92 (206)
T ss_dssp EEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|.++.+.+.+.
T Consensus 93 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 93 QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988876666899999999999987777888899999999999999999999999999999999999887
Q ss_pred hhhhhcc
Q 040835 161 VSKKALT 167 (206)
Q Consensus 161 ~~~~~~~ 167 (206)
.......
T Consensus 173 ~~~~~~~ 179 (206)
T 2bcg_Y 173 MSQQNLN 179 (206)
T ss_dssp CCHHHHH
T ss_pred Hhhcccc
Confidence 6665443
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=211.44 Aligned_cols=161 Identities=38% Similarity=0.560 Sum_probs=143.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 19 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 97 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE 97 (206)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999988877777766544 4556778888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|.++++.+.+
T Consensus 98 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 98 MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999998887655 3579999999999998777788899999999999999999999999999999999999987
Q ss_pred Hhh
Q 040835 160 IVS 162 (206)
Q Consensus 160 ~~~ 162 (206)
...
T Consensus 178 ~~~ 180 (206)
T 2bov_A 178 RKM 180 (206)
T ss_dssp HHH
T ss_pred ccc
Confidence 643
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.7e-35 Score=213.80 Aligned_cols=165 Identities=39% Similarity=0.659 Sum_probs=145.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (207)
T 1vg8_A 13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92 (207)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETLRAVPTEDAKEFAE-KEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+.++..+..|+..+..... .+.|+++|+||+|+. .+....++...++. ..+++++++||+++.|++++|++|.+
T Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 93 PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999888765432 468999999999997 35667788888887 56889999999999999999999999
Q ss_pred HHHHHhhhhhc
Q 040835 156 EIYRIVSKKAL 166 (206)
Q Consensus 156 ~i~~~~~~~~~ 166 (206)
.+.+.......
T Consensus 172 ~~~~~~~~~~~ 182 (207)
T 1vg8_A 172 NALKQETEVEL 182 (207)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhcccccc
Confidence 99887665443
No 6
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-34 Score=206.63 Aligned_cols=165 Identities=44% Similarity=0.711 Sum_probs=149.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 31 lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~ 110 (201)
T 2ew1_A 31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|.++.+.+.+.
T Consensus 111 ~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 111 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998877667899999999999987778888899999999999999999999999999999999999876
Q ss_pred hhhhh
Q 040835 161 VSKKA 165 (206)
Q Consensus 161 ~~~~~ 165 (206)
.....
T Consensus 191 ~~~~~ 195 (201)
T 2ew1_A 191 ARQNT 195 (201)
T ss_dssp HC---
T ss_pred Hhhcc
Confidence 55443
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.7e-33 Score=203.31 Aligned_cols=163 Identities=52% Similarity=0.875 Sum_probs=145.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 105 (191)
T 2a5j_A 26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 105 (191)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999988888888888887888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.+|.+.+.+.
T Consensus 106 ~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 106 RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998876667899999999999987677888899999999999999999999999999999999999876
Q ss_pred hhh
Q 040835 161 VSK 163 (206)
Q Consensus 161 ~~~ 163 (206)
..+
T Consensus 186 ~~~ 188 (191)
T 2a5j_A 186 IQQ 188 (191)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
No 8
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-33 Score=204.14 Aligned_cols=164 Identities=41% Similarity=0.732 Sum_probs=150.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 92 (203)
T 1zbd_A 13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN 92 (203)
T ss_dssp EECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|.+|.+.+.+.
T Consensus 93 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 93 EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988776656899999999999987778888999999999999999999999999999999999999887
Q ss_pred hhhh
Q 040835 161 VSKK 164 (206)
Q Consensus 161 ~~~~ 164 (206)
....
T Consensus 173 ~~~~ 176 (203)
T 1zbd_A 173 MSES 176 (203)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6554
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.5e-34 Score=204.77 Aligned_cols=164 Identities=47% Similarity=0.789 Sum_probs=120.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 13 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (183)
T 2fu5_C 13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 92 (183)
T ss_dssp EECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC
Confidence 58999999999999999988887788887877777778888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|.++.+.+.+.
T Consensus 93 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 93 EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988876656899999999999987677888999999999999999999999999999999999999877
Q ss_pred hhhh
Q 040835 161 VSKK 164 (206)
Q Consensus 161 ~~~~ 164 (206)
..+.
T Consensus 173 ~~~~ 176 (183)
T 2fu5_C 173 MDKN 176 (183)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 6554
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=202.12 Aligned_cols=163 Identities=51% Similarity=0.816 Sum_probs=150.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 21 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 100 (196)
T 3tkl_A 21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 100 (196)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++.+.+.+.
T Consensus 101 ~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 101 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998887767899999999999988788888999999999999999999999999999999999999876
Q ss_pred hhh
Q 040835 161 VSK 163 (206)
Q Consensus 161 ~~~ 163 (206)
...
T Consensus 181 ~~~ 183 (196)
T 3tkl_A 181 MGP 183 (196)
T ss_dssp C--
T ss_pred hcc
Confidence 543
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.4e-33 Score=201.40 Aligned_cols=165 Identities=48% Similarity=0.770 Sum_probs=150.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 15 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 94 (186)
T 2bme_A 15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94 (186)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC
Confidence 58999999999999999999988888888888887888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|.++.+.+.+.
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 95 RETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999888776667899999999999977677888899999999999999999999999999999999999887
Q ss_pred hhhhh
Q 040835 161 VSKKA 165 (206)
Q Consensus 161 ~~~~~ 165 (206)
.....
T Consensus 175 ~~~~~ 179 (186)
T 2bme_A 175 IESGE 179 (186)
T ss_dssp HHSCC
T ss_pred hhhcC
Confidence 65543
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=204.68 Aligned_cols=161 Identities=52% Similarity=0.809 Sum_probs=139.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 34 vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (201)
T 2hup_A 34 LVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK 113 (201)
T ss_dssp EEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB
T ss_pred EECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC
Confidence 58999999999999999999888888887777777788888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++..+++ +++++||+++.|++++|.+|.+.+.+
T Consensus 114 ~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 114 RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876667899999999999987677888999999999999 99999999999999999999999876
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 194 ~~ 195 (201)
T 2hup_A 194 RH 195 (201)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.1e-33 Score=198.74 Aligned_cols=159 Identities=51% Similarity=0.871 Sum_probs=145.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 20 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 99 (179)
T 1z0f_A 20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 99 (179)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|+++.+.+.+
T Consensus 100 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 100 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999998887766789999999999998767788899999999999999999999999999999999988754
No 14
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-33 Score=200.94 Aligned_cols=163 Identities=66% Similarity=1.027 Sum_probs=149.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|++|+|+|+++
T Consensus 30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~ 109 (193)
T 2oil_A 30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK 109 (193)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC
Confidence 58999999999999999999988888888888888888888889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|.+|.+.+.+.
T Consensus 110 ~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 110 HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988876667899999999999987677888899999999999999999999999999999999999876
Q ss_pred hhh
Q 040835 161 VSK 163 (206)
Q Consensus 161 ~~~ 163 (206)
..+
T Consensus 190 ~~~ 192 (193)
T 2oil_A 190 VSK 192 (193)
T ss_dssp HHT
T ss_pred hhc
Confidence 543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=5.3e-33 Score=200.34 Aligned_cols=161 Identities=45% Similarity=0.776 Sum_probs=147.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 106 (189)
T 2gf9_A 27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN 106 (189)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC
Confidence 58999999999999999999888888888888877778888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|+++.+.+.+.
T Consensus 107 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 107 QESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988876656899999999999987777888899999999999999999999999999999999998765
Q ss_pred h
Q 040835 161 V 161 (206)
Q Consensus 161 ~ 161 (206)
.
T Consensus 187 ~ 187 (189)
T 2gf9_A 187 M 187 (189)
T ss_dssp H
T ss_pred h
Confidence 4
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=6.4e-33 Score=198.23 Aligned_cols=160 Identities=44% Similarity=0.786 Sum_probs=145.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 17 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
T 2efe_B 17 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN 96 (181)
T ss_dssp EECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC
Confidence 58999999999999999999988888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|.+|.+.+.+.
T Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 97 QASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998877666899999999999987677888999999999999999999999999999999999877544
No 17
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=203.21 Aligned_cols=165 Identities=48% Similarity=0.784 Sum_probs=139.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 109 (200)
T 2o52_A 30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 109 (200)
T ss_dssp EEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC
Confidence 58999999999999999999888888888888877888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......++|+++|+||+|+...+.+...+...++...+++++++||+++.|++++|.++++.+.+.
T Consensus 110 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 110 RETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988776667899999999999987677888899999999999999999999999999999999999887
Q ss_pred hhhhh
Q 040835 161 VSKKA 165 (206)
Q Consensus 161 ~~~~~ 165 (206)
.....
T Consensus 190 ~~~~~ 194 (200)
T 2o52_A 190 IDSGE 194 (200)
T ss_dssp HHTTS
T ss_pred HhcCC
Confidence 65543
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.7e-33 Score=197.63 Aligned_cols=163 Identities=48% Similarity=0.747 Sum_probs=147.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+..++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 14 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS 93 (181)
T ss_dssp EECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+.... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+++.+.+.+.
T Consensus 94 ~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 94 AESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999887755 5799999999999987778888999999999999999999999999999999999999887
Q ss_pred hhhh
Q 040835 161 VSKK 164 (206)
Q Consensus 161 ~~~~ 164 (206)
..++
T Consensus 173 ~~~~ 176 (181)
T 3tw8_B 173 KKDN 176 (181)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6654
No 19
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=8.5e-33 Score=195.40 Aligned_cols=157 Identities=46% Similarity=0.772 Sum_probs=144.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 90 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC
Confidence 58999999999999999999888888888888888888888889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.++..+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|.+.+
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 91 EESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999988776667899999999999977677888899999999999999999999999999999998764
No 20
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.6e-32 Score=197.34 Aligned_cols=162 Identities=33% Similarity=0.531 Sum_probs=140.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 9 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN 87 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 589999999999999999988777777754 4445666778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.... ..+.|+++|+||+|+.. +....++...++..++++++++||+++.|++++|.++.+.+.+
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 88 TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999988887643 35799999999999974 6677888999999999999999999999999999999999987
Q ss_pred Hhhhh
Q 040835 160 IVSKK 164 (206)
Q Consensus 160 ~~~~~ 164 (206)
...+.
T Consensus 167 ~~~~~ 171 (189)
T 4dsu_A 167 HKEKM 171 (189)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 75543
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=204.46 Aligned_cols=162 Identities=46% Similarity=0.766 Sum_probs=149.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|||+++
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 107 (191)
T 3dz8_A 28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 107 (191)
T ss_dssp EEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC
T ss_pred EECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.+++.+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++++.+.+.
T Consensus 108 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 108 EESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999887667899999999999987788889999999999999999999999999999999999998876
Q ss_pred hh
Q 040835 161 VS 162 (206)
Q Consensus 161 ~~ 162 (206)
..
T Consensus 188 ~~ 189 (191)
T 3dz8_A 188 MS 189 (191)
T ss_dssp C-
T ss_pred cc
Confidence 44
No 22
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-32 Score=201.16 Aligned_cols=166 Identities=45% Similarity=0.783 Sum_probs=148.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 25 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 104 (213)
T 3cph_A 25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD 104 (213)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999888888888888887888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+. .+....++...++..++++++++||+++.|++++|.+|.+.+.+.
T Consensus 105 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 105 ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998887665679999999999994 466778888999999999999999999999999999999998877
Q ss_pred hhhhhcc
Q 040835 161 VSKKALT 167 (206)
Q Consensus 161 ~~~~~~~ 167 (206)
.......
T Consensus 184 ~~~~~~~ 190 (213)
T 3cph_A 184 IDSNKLV 190 (213)
T ss_dssp HHTTSCC
T ss_pred Hhhhhcc
Confidence 6554433
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.2e-32 Score=193.34 Aligned_cols=157 Identities=42% Similarity=0.738 Sum_probs=145.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|++..+...+.++.+.++......+.+....+.+|||||.+.+...+..+++.+|++|+|+|+++
T Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.++..+..|+..+........|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|.++.+.+
T Consensus 91 ~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 91 EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999998877667899999999999987777888899999999999999999999999999999998765
No 24
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=194.41 Aligned_cols=157 Identities=45% Similarity=0.746 Sum_probs=143.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1ek0_A 8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK 87 (170)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC---CCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETL---RAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.++..+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||+++.|++++|+++.+.+
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 88 PQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999888766678999999999999654 66788888999999999999999999999999999998654
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=3.6e-33 Score=197.52 Aligned_cols=158 Identities=41% Similarity=0.685 Sum_probs=137.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 11 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1z08_A 11 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD 90 (170)
T ss_dssp EECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC
Confidence 58999999999999999998888888888888777777888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+++.+.+.
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 91 EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999999998887665567999999999999877788888999999999999999999999999999999998875
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=7.2e-33 Score=195.89 Aligned_cols=159 Identities=48% Similarity=0.805 Sum_probs=138.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1g16_A 8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87 (170)
T ss_dssp EEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC
Confidence 58999999999999999999888888887877777777777778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+......+.|+++|+||+|+. .+....++...++..++++++++||+++.|++++|.++.+.+.++
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 88 ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999998887766789999999999994 456778889999999999999999999999999999999988764
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=200.33 Aligned_cols=160 Identities=43% Similarity=0.777 Sum_probs=139.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 31 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp EECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++... +++++++||+++.|++++|.+|.+.+.+
T Consensus 111 ~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 111 KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999998888776668999999999999877788888889998885 8899999999999999999999998865
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
+
T Consensus 191 ~ 191 (192)
T 2il1_A 191 K 191 (192)
T ss_dssp T
T ss_pred h
Confidence 3
No 28
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=9e-33 Score=203.25 Aligned_cols=164 Identities=41% Similarity=0.696 Sum_probs=144.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe----------EEEEEEEeCCCchhhhhhhHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK----------NVKAQIWDTAGQERYRAVTSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~~~~~~~d 70 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+|
T Consensus 30 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 109 (217)
T 2f7s_A 30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM 109 (217)
T ss_dssp EESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCC
T ss_pred EECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCC
Confidence 5899999999999999999887777777777766666666655 788999999999999999999999999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
++|+|||++++.++..+..|+..+..... .++|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++
T Consensus 110 ~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 110 GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189 (217)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHH
Confidence 99999999999999999999887765543 57999999999999876778889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 040835 150 FLTVLTEIYRIVSKK 164 (206)
Q Consensus 150 ~~~l~~~i~~~~~~~ 164 (206)
|.+|.+.+.+.....
T Consensus 190 ~~~l~~~i~~~~~~~ 204 (217)
T 2f7s_A 190 VETLLDLIMKRMEQC 204 (217)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999998876554
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-32 Score=195.79 Aligned_cols=160 Identities=46% Similarity=0.747 Sum_probs=136.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|++..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|++
T Consensus 15 v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 94 (180)
T 2g6b_A 15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT 94 (180)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETT
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECC
Confidence 5899999999999999998885 356677777777777778888899999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++.+.+.+
T Consensus 95 ~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 95 NKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998887666789999999999998777888889999999999999999999999999999999988765
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 175 ~ 175 (180)
T 2g6b_A 175 R 175 (180)
T ss_dssp -
T ss_pred H
Confidence 4
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.4e-32 Score=194.08 Aligned_cols=158 Identities=36% Similarity=0.624 Sum_probs=144.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 10 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (168)
T 1z2a_A 10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD 89 (168)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|+++.+.+.+
T Consensus 90 ~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 90 RESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999999999998887655 579999999999998767788889999999999999999999999999999999988753
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=193.05 Aligned_cols=162 Identities=28% Similarity=0.363 Sum_probs=131.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh--hhhhhHhHhcCCcEEEEEeeC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER--YRAVTSAYYRGAVGAMLVYDI 78 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~~i~v~d~ 78 (206)
|+|++|||||||+++|.+..+...+. +.+.+.....+.+++..+.+.+|||||++. +..+...+++.+|++++|||+
T Consensus 9 i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~ 87 (175)
T 2nzj_A 9 LLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI 87 (175)
T ss_dssp EECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEET
T ss_pred EECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEEC
Confidence 58999999999999999988765544 456677777778888889999999999987 566677889999999999999
Q ss_pred CChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 79 TKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 79 ~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+++.++..+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++.+.+
T Consensus 88 ~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 88 ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999988887653 35799999999999987777888888899999999999999999999999999999998
Q ss_pred HHHhhh
Q 040835 158 YRIVSK 163 (206)
Q Consensus 158 ~~~~~~ 163 (206)
......
T Consensus 168 ~~~~~~ 173 (175)
T 2nzj_A 168 RLRRRD 173 (175)
T ss_dssp HHHHC-
T ss_pred HHhhcc
Confidence 765443
No 32
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=199.18 Aligned_cols=159 Identities=44% Similarity=0.751 Sum_probs=145.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|++..+...+.++.+.++....+.+++....+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 28 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~ 107 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK 107 (192)
T ss_dssp EEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC
Confidence 58999999999999999999887888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|++|.+.+.+
T Consensus 108 ~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 108 QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp THHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999887766689999999999998767788899999999999999999999999999999999887643
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.2e-32 Score=195.91 Aligned_cols=164 Identities=40% Similarity=0.684 Sum_probs=145.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeE-EEEEEECCe---------EEEEEEEeCCCchhhhhhhHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQ-TKTLVIHHK---------NVKAQIWDTAGQERYRAVTSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~~~~~~~~d 70 (206)
|+|++|||||||+++|++..+...+.++.+.++. ...+..++. .+.+.+|||||++.+...+..+++.+|
T Consensus 16 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 95 (195)
T 3bc1_A 16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAM 95 (195)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCS
T ss_pred EECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCC
Confidence 5899999999999999999888888888777776 555555554 789999999999999999999999999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++
T Consensus 96 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 96 GFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 99999999999999999999988876654 67999999999999876778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 040835 150 FLTVLTEIYRIVSKK 164 (206)
Q Consensus 150 ~~~l~~~i~~~~~~~ 164 (206)
|.+|.+.+.+...+.
T Consensus 176 ~~~l~~~~~~~~~~~ 190 (195)
T 3bc1_A 176 IEMLLDLIMKRMERS 190 (195)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999998765543
No 34
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.2e-32 Score=195.69 Aligned_cols=160 Identities=45% Similarity=0.766 Sum_probs=145.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 20 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (195)
T 1x3s_A 20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99 (195)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 58999999999999999999988888888888888888888889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.... ..++|+++|+||+|+.. +.+..++...++...+++++++||+++.|++++|.+|.+.+.+
T Consensus 100 ~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 100 RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999887654 35789999999999954 5677888999999999999999999999999999999998875
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 179 ~~ 180 (195)
T 1x3s_A 179 TP 180 (195)
T ss_dssp SG
T ss_pred hh
Confidence 43
No 35
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.6e-32 Score=194.25 Aligned_cols=158 Identities=33% Similarity=0.488 Sum_probs=143.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 23 v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 101 (183)
T 3kkq_A 23 VVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD 101 (183)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC
Confidence 589999999999999999988888888877666 5677788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccC-CCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSAL-ESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~v~~~~~~l~~~i~ 158 (206)
+.++..+..|+..+... ...++|+++|+||+|+...+.+..+++..++..++++++++||+ ++.|++++|.++.+.+.
T Consensus 102 ~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 102 KASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 99999999998887653 34678999999999998778889999999999999999999999 99999999999998876
Q ss_pred H
Q 040835 159 R 159 (206)
Q Consensus 159 ~ 159 (206)
+
T Consensus 182 ~ 182 (183)
T 3kkq_A 182 Q 182 (183)
T ss_dssp H
T ss_pred h
Confidence 5
No 36
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.6e-32 Score=195.68 Aligned_cols=159 Identities=40% Similarity=0.711 Sum_probs=144.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 19 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 58999999999999999999888888888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|+++.+.+.+
T Consensus 99 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 99 TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999988877655689999999999998777888888999999999999999999999999999999876543
No 37
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.2e-32 Score=195.62 Aligned_cols=160 Identities=32% Similarity=0.447 Sum_probs=142.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+++.+...+.++.+.++ ...+..++..+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 11 ~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS 89 (181)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC
Confidence 589999999999999999888888888877766 5667788888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+++++.+..|+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|.++++.+.+
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 90 IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999998876543 3579999999999998778889999999999999999999999999999999999998876
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 170 ~~ 171 (181)
T 3t5g_A 170 MD 171 (181)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4.5e-32 Score=195.48 Aligned_cols=159 Identities=40% Similarity=0.694 Sum_probs=141.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-hhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-AVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|++|+|+|++
T Consensus 25 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~ 104 (189)
T 1z06_A 25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT 104 (189)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECc
Confidence 58999999999999999999988888888888888888888888999999999999998 88999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCC---CCHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALES---TNVELAFLTVLT 155 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~v~~~~~~l~~ 155 (206)
++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++...+++++++||+++ .|++++|.+|.+
T Consensus 105 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~ 184 (189)
T 1z06_A 105 NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184 (189)
T ss_dssp CHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHH
Confidence 9999999999998887654 467999999999999877788889999999999999999999999 999999999988
Q ss_pred HHHH
Q 040835 156 EIYR 159 (206)
Q Consensus 156 ~i~~ 159 (206)
.+.+
T Consensus 185 ~i~~ 188 (189)
T 1z06_A 185 KLKS 188 (189)
T ss_dssp ----
T ss_pred HHhh
Confidence 7643
No 39
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=5e-32 Score=193.39 Aligned_cols=160 Identities=32% Similarity=0.522 Sum_probs=142.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 14 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND 92 (181)
T ss_dssp EEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC
Confidence 5899999999999999999888888888776655 566778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHh-cCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRG-HADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.. ....+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|.+.+.+
T Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 93 RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999888743 334679999999999998777888889999999999999999999999999999999999876
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 173 ~~ 174 (181)
T 2fn4_A 173 YQ 174 (181)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 40
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=199.71 Aligned_cols=158 Identities=41% Similarity=0.703 Sum_probs=133.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 33 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp EESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 58999999999999999999887788888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC------cCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE------TLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++..+..|+..+......++|+++|+||+|+. ..+.+..++...++..++++++++||+++.|++++|.+++
T Consensus 113 ~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 113 EKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp HHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999998887665689999999999985 3467788889999999999999999999999999999999
Q ss_pred HHHH
Q 040835 155 TEIY 158 (206)
Q Consensus 155 ~~i~ 158 (206)
+.+.
T Consensus 193 ~~i~ 196 (199)
T 2p5s_A 193 REVK 196 (199)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8774
No 41
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=3e-32 Score=192.68 Aligned_cols=160 Identities=25% Similarity=0.329 Sum_probs=128.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh-hhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA-VTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++.+|++++|+|++
T Consensus 7 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT 86 (169)
T ss_dssp EECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence 589999999999999998777666666666777777788888899999999999988876 6777889999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+++++..+..|+..+..... .++|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++++.+.
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 87 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 99999999999988876553 47999999999999877888999999999999999999999999999999999999876
Q ss_pred HH
Q 040835 159 RI 160 (206)
Q Consensus 159 ~~ 160 (206)
.+
T Consensus 167 ~~ 168 (169)
T 3q85_A 167 LR 168 (169)
T ss_dssp HT
T ss_pred hc
Confidence 54
No 42
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=199.94 Aligned_cols=156 Identities=29% Similarity=0.387 Sum_probs=135.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.+.. ..+..++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 13 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (199)
T 2gf0_A 13 VFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTS 91 (199)
T ss_dssp EEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcC
Confidence 5899999999999999999888777777665443 455667888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+.++..+..|+..+..... .+.|+++|+||+|+.. +.+..++...++..++++++++||+++.|++++|+++++.+.
T Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 92 KQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 9999988888777665432 4689999999999975 566788888999999999999999999999999999987654
No 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.3e-31 Score=190.75 Aligned_cols=158 Identities=38% Similarity=0.656 Sum_probs=138.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (177)
T 1wms_A 12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD 91 (177)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC
Confidence 58999999999999999999888888888888878888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLETLRAVPTEDAKEFAE-KEGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||+++.|++++|+++++
T Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 92 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999888765543 578999999999997 46678888888888 55789999999999999999999999
Q ss_pred HHHH
Q 040835 156 EIYR 159 (206)
Q Consensus 156 ~i~~ 159 (206)
.+++
T Consensus 171 ~~~~ 174 (177)
T 1wms_A 171 RVLA 174 (177)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8864
No 44
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.5e-32 Score=197.17 Aligned_cols=160 Identities=25% Similarity=0.327 Sum_probs=136.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh-hhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA-VTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|++|+|||++
T Consensus 28 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~ 107 (195)
T 3cbq_A 28 LVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT 107 (195)
T ss_dssp EECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC
Confidence 589999999999999986544333444545566666777888899999999999987765 7788899999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++.++..+..|+..+..... .++|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++++.+.
T Consensus 108 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 108 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999988876543 57999999999999877778888999999999999999999999999999999998876
Q ss_pred HH
Q 040835 159 RI 160 (206)
Q Consensus 159 ~~ 160 (206)
+.
T Consensus 188 ~~ 189 (195)
T 3cbq_A 188 LR 189 (195)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.1e-32 Score=196.54 Aligned_cols=160 Identities=36% Similarity=0.574 Sum_probs=140.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH-KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|++|+|+|++
T Consensus 11 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 90 (178)
T 2hxs_A 11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT 90 (178)
T ss_dssp EECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETT
T ss_pred EECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECC
Confidence 589999999999999999988777778877777777777766 6789999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC--CCCc-EEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD--KNII-IMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++.++..+..|+..+..... ...| +++|+||+|+...+.+..++...++..++++++++||+++.|++++|.++.+.
T Consensus 91 ~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 91 NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp CHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999888766431 2345 89999999998767788889999999999999999999999999999999988
Q ss_pred HHHH
Q 040835 157 IYRI 160 (206)
Q Consensus 157 i~~~ 160 (206)
+.+.
T Consensus 171 ~~~~ 174 (178)
T 2hxs_A 171 ILGI 174 (178)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 7543
No 46
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.9e-31 Score=191.64 Aligned_cols=155 Identities=19% Similarity=0.338 Sum_probs=135.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++ +. .....+.+++..+.+.+|||+|++.+. +++.+|++++|||+++
T Consensus 25 ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~ 97 (184)
T 3ihw_A 25 IVGNLSSGKSALVHRYLTGTYVQEESPE-GG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED 97 (184)
T ss_dssp EECCTTSCHHHHHHHHHHSSCCCCCCTT-CE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCC-cc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcC
Confidence 5899999999999999999988777776 33 334677888889999999999998776 7788999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCC--CcCCCCCHHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDL--ETLRAVPTEDAKEFAEKEG-LCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+.++..+..|+..+..... .+.|+++|+||+|+ ...+.+..+++..++..++ ++++++||+++.|++++|.++++.
T Consensus 98 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 98 EISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 9999999999999887653 57899999999998 3557788999999999997 899999999999999999999999
Q ss_pred HHHHhh
Q 040835 157 IYRIVS 162 (206)
Q Consensus 157 i~~~~~ 162 (206)
+.+.+.
T Consensus 178 i~~~~~ 183 (184)
T 3ihw_A 178 VVALRK 183 (184)
T ss_dssp HHHHC-
T ss_pred HHHHhc
Confidence 887643
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=195.35 Aligned_cols=156 Identities=29% Similarity=0.458 Sum_probs=135.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+ .....+++..+.+.+|||+|++.+..+ ..+++.+|++|+|||+++
T Consensus 26 vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDS 103 (187)
T ss_dssp EECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTC
T ss_pred EECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCC
Confidence 589999999999999999998888888877655 345677888899999999999988774 678999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC---CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEecc-CCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA---DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSA-LESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~v~~~~~~l~~~ 156 (206)
++++..+..|+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++|| +++.|++++|..+++.
T Consensus 104 ~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 104 RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHH
Confidence 999999999998887653 257999999999999877788899999999999999999999 8999999999999988
Q ss_pred HH
Q 040835 157 IY 158 (206)
Q Consensus 157 i~ 158 (206)
+.
T Consensus 184 i~ 185 (187)
T 3c5c_A 184 AR 185 (187)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.8e-31 Score=193.03 Aligned_cols=158 Identities=38% Similarity=0.686 Sum_probs=139.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeE------------------------------------
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKN------------------------------------ 44 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 44 (206)
|+|++|||||||+++|++..+...+.++.+.++....+.+++..
T Consensus 12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3clv_A 12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC 91 (208)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTC
T ss_pred EECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccc
Confidence 58999999999999999999888888888877777766666544
Q ss_pred -EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040835 45 -VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED 123 (206)
Q Consensus 45 -~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 123 (206)
..+.+|||||++.+...+..+++.+|++|+|+|++++.++..+..|+..+.... +.|+++|+||+| ...+....++
T Consensus 92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~~~~~~~~ 168 (208)
T 3clv_A 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNKFQVDILE 168 (208)
T ss_dssp EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-CCSCHHH
T ss_pred eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-cccccCCHHH
Confidence 889999999999999999999999999999999999999999999998887765 399999999999 5456778899
Q ss_pred HHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 040835 124 AKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 124 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~ 161 (206)
+..++...+++++++||+++.|++++|.+|.+.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 169 VQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999887653
No 49
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.1e-31 Score=189.16 Aligned_cols=158 Identities=37% Similarity=0.576 Sum_probs=137.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|+|||||+++|++..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++++|+|+++
T Consensus 9 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE 87 (168)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCC
Confidence 589999999999999999988777777766544 3456678888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+..... .++|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|+++.+.+.+
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 88 MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999888876553 579999999999998767788899999999999999999999999999999999988753
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=9.8e-32 Score=194.44 Aligned_cols=159 Identities=26% Similarity=0.483 Sum_probs=141.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 28 ~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 106 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN 106 (194)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC
Confidence 5899999999999999999988888888776655 456778888999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc--CCCCCHHHHHHHHHHcCCe-EEEeccCCCCCHHHHHHHHHHH
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET--LRAVPTEDAKEFAEKEGLC-FMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+.++..+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++..++..+++. ++++||+++.|++++|.++++.
T Consensus 107 ~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 107 RTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 9999987 67888887654 5799999999999964 3667889999999999998 9999999999999999999998
Q ss_pred HHHHh
Q 040835 157 IYRIV 161 (206)
Q Consensus 157 i~~~~ 161 (206)
+.+..
T Consensus 186 i~~~~ 190 (194)
T 3reg_A 186 IFSNK 190 (194)
T ss_dssp HHCSC
T ss_pred HHhcC
Confidence 87653
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=198.15 Aligned_cols=160 Identities=31% Similarity=0.496 Sum_probs=138.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 29 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 107 (201)
T 3oes_A 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS 107 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC
T ss_pred EECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC
Confidence 589999999999999999999888888866655 4555666777899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+.... ..++|+++|+||+|+...+.+...+...++..++++++++||+++.|++++|.+|.+.+.+
T Consensus 108 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 108 LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999887653 3578999999999998778889999999999999999999999999999999999998876
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 188 ~~ 189 (201)
T 3oes_A 188 VE 189 (201)
T ss_dssp C-
T ss_pred hh
Confidence 54
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.8e-31 Score=188.15 Aligned_cols=158 Identities=27% Similarity=0.361 Sum_probs=118.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+...... .++.+.+. ...+.+++..+.+.+||++|++.+...+..+++.+|++++|+|+++
T Consensus 7 ~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (166)
T 3q72_A 7 LLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD 84 (166)
T ss_dssp EEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC
Confidence 589999999999999998766433 33444444 4566778889999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++++..+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|+++.+.+.+
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 85 KGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 999999999998887653 3679999999999998878889999999999999999999999999999999999998876
Q ss_pred H
Q 040835 160 I 160 (206)
Q Consensus 160 ~ 160 (206)
.
T Consensus 165 ~ 165 (166)
T 3q72_A 165 R 165 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 53
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=5.8e-32 Score=198.75 Aligned_cols=159 Identities=25% Similarity=0.437 Sum_probs=139.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+|++|+|||+++
T Consensus 32 vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 110 (214)
T 3q3j_B 32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 110 (214)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC
Confidence 589999999999999999999888888877665 3556677778999999999999999999999999999999999999
Q ss_pred hhhHHH-HHHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCC-
Q 040835 81 RQSFDN-VARWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTN- 145 (206)
Q Consensus 81 ~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~- 145 (206)
++++.. +..|+..+.... .+.|+++|+||+|+..+ +.+..+++..++..+++ +++++||+++.|
T Consensus 111 ~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~ 189 (214)
T 3q3j_B 111 PETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKS 189 (214)
T ss_dssp THHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCccc
Confidence 999998 688999888765 57999999999999653 67889999999999999 999999999998
Q ss_pred HHHHHHHHHHHHHHHh
Q 040835 146 VELAFLTVLTEIYRIV 161 (206)
Q Consensus 146 v~~~~~~l~~~i~~~~ 161 (206)
|+++|.++++.+....
T Consensus 190 v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 190 IHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999887553
No 54
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.3e-32 Score=199.43 Aligned_cols=164 Identities=31% Similarity=0.532 Sum_probs=108.5
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCCCccccceeeEEEEEEECCe--EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLDSKATIGVEFQTKTLVIHHK--NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 76 (206)
|+|++|||||||+++|++. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus 25 v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (208)
T 2yc2_C 25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVF 104 (208)
T ss_dssp EC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEE
Confidence 5899999999999999998 777777777776666667777766 789999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCc-CCCCCHHHHHHHHHHcCCeEEEeccCC-CCCHHHHHH
Q 040835 77 DITKRQSFDNVARWLEELRGHAD---KNIIIMLVGNKSDLET-LRAVPTEDAKEFAEKEGLCFMETSALE-STNVELAFL 151 (206)
Q Consensus 77 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~v~~~~~ 151 (206)
|++++.++..+..|+..+..... .++|+++|+||+|+.. .+.+..+++..++..++++++++||++ +.|++++|.
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 105 DVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHH
Confidence 99999999999999999887665 5899999999999976 677888999999999999999999999 999999999
Q ss_pred HHHHHHHHHhhhh
Q 040835 152 TVLTEIYRIVSKK 164 (206)
Q Consensus 152 ~l~~~i~~~~~~~ 164 (206)
++.+.+.+...++
T Consensus 185 ~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 185 SIATTFYRNYEDK 197 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999988776554
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=7.2e-32 Score=192.74 Aligned_cols=161 Identities=38% Similarity=0.650 Sum_probs=128.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+.++ +....+.+||+||++.+...+..+++.+|++|+|+|++
T Consensus 13 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (182)
T 1ky3_A 13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT 92 (182)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECC
Confidence 58999999999999999999888888887777777777666 55688999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC----CCCcEEEEEeCCCCC-cCCCCCHHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD----KNIIIMLVGNKSDLE-TLRAVPTEDAKEFAE-KEGLCFMETSALESTNVELAFLTV 153 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~l 153 (206)
++.++..+..|+..+..... .+.|+++|+||+|+. ..+.+..++...++. ..+++++++||+++.|++++|+++
T Consensus 93 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (182)
T 1ky3_A 93 NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172 (182)
T ss_dssp CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHH
Confidence 99999999999988765542 678999999999994 445567888888888 457899999999999999999999
Q ss_pred HHHHHHHh
Q 040835 154 LTEIYRIV 161 (206)
Q Consensus 154 ~~~i~~~~ 161 (206)
.+.+.+.+
T Consensus 173 ~~~~~~~~ 180 (182)
T 1ky3_A 173 ARSALQQN 180 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988764
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.8e-31 Score=190.45 Aligned_cols=160 Identities=38% Similarity=0.562 Sum_probs=141.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 23 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 101 (187)
T 2a9k_A 23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE 101 (187)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcC
Confidence 589999999999999999988777777766544 3456677888899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+..... .++|+++|+||+|+...+.+..+++..++..++++++++||+++.|++++|++|.+.+.+
T Consensus 102 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 102 MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999888876553 479999999999998767788899999999999999999999999999999999999876
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
.+
T Consensus 182 ~~ 183 (187)
T 2a9k_A 182 RK 183 (187)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 57
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.5e-31 Score=189.63 Aligned_cols=158 Identities=21% Similarity=0.352 Sum_probs=133.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+.. +.++.+.. ....+.+++..+.+.+|||+|++. ..+++.+|++|+|||+++
T Consensus 12 ~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~ 84 (178)
T 2iwr_A 12 VLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLED 84 (178)
T ss_dssp EECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcC
Confidence 58999999999999999998876 66676644 356677788889999999999876 457888999999999999
Q ss_pred hhhHHHHHHHHHHHHhc---CCCCCcEEEEEeCCCCC--cCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH---ADKNIIIMLVGNKSDLE--TLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+... ...++|+++|+||+|+. ..+.+..+++..++... +++++++||+++.|++++|.++.
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 85 ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHH
Confidence 99999999876655443 23579999999999993 45678888899998886 68999999999999999999999
Q ss_pred HHHHHHhhhhh
Q 040835 155 TEIYRIVSKKA 165 (206)
Q Consensus 155 ~~i~~~~~~~~ 165 (206)
+.+.+......
T Consensus 165 ~~~~~~~~~~~ 175 (178)
T 2iwr_A 165 QKVVTLRKQQQ 175 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99988766543
No 58
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.7e-32 Score=201.04 Aligned_cols=162 Identities=31% Similarity=0.545 Sum_probs=135.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus 14 i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 92 (212)
T 2j0v_A 14 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS 92 (212)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC
Confidence 589999999999999999988877778776554 3456677788999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--------CCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRA--------VPTEDAKEFAEKEGL-CFMETSALESTNVELAF 150 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~ 150 (206)
++++..+. .|+..+.... .+.|+++|+||+|+...+. +..+++..++..+++ +++++||+++.|++++|
T Consensus 93 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 93 KASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp HHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHH
Confidence 99999886 7988887765 4799999999999865332 367888899999986 89999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 040835 151 LTVLTEIYRIVSKK 164 (206)
Q Consensus 151 ~~l~~~i~~~~~~~ 164 (206)
+++++.+.+...++
T Consensus 172 ~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 172 DTAIKVVLQPPRRK 185 (212)
T ss_dssp HHHHHHHHCC----
T ss_pred HHHHHHHhhhhhhc
Confidence 99999987654433
No 59
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.1e-31 Score=189.24 Aligned_cols=157 Identities=30% Similarity=0.492 Sum_probs=138.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.... ..+.+++..+.+.+||+||++.+...+..+++.+|++++|+|+++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 86 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA 86 (167)
T ss_dssp EECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC
Confidence 5899999999999999999888778777665543 456667778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-GLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+.++..+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++..+ +++++++||+++.|++++|+++.+.+.
T Consensus 87 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 87 QSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 999999988988876643 357999999999999877778888999999988 789999999999999999999998763
No 60
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.7e-31 Score=188.00 Aligned_cols=158 Identities=30% Similarity=0.461 Sum_probs=139.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+++.+...+.++.+.. ....+.+++....+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 8 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (167)
T 1kao_A 8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN 86 (167)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC
Confidence 58999999999999999998887777775543 35667778888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|+++.+.+.+
T Consensus 87 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 87 QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 999999999888876654 3579999999999997777888889999999999999999999999999999999988753
No 61
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-31 Score=192.07 Aligned_cols=160 Identities=34% Similarity=0.475 Sum_probs=141.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..+++.+|++|+|||+++
T Consensus 33 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~ 110 (196)
T 2atv_A 33 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD 110 (196)
T ss_dssp EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC
Confidence 589999999999999999998888888866554 45567788889999999999987 7778889999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCC-CHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALEST-NVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~l~~~i~ 158 (206)
+++++.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||+++. |++++|+++++.+.
T Consensus 111 ~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 111 RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 999999999988877643 3579999999999998777888899999999999999999999999 99999999999987
Q ss_pred HHhh
Q 040835 159 RIVS 162 (206)
Q Consensus 159 ~~~~ 162 (206)
+...
T Consensus 191 ~~~~ 194 (196)
T 2atv_A 191 RRRM 194 (196)
T ss_dssp HHHC
T ss_pred hhcc
Confidence 7643
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.2e-31 Score=192.09 Aligned_cols=160 Identities=29% Similarity=0.498 Sum_probs=133.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+|||+++
T Consensus 25 ~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 103 (201)
T 2q3h_A 25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS 103 (201)
T ss_dssp EECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC
Confidence 589999999999999999988777777765444 4556678888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLET------------LRAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+. .|+..+.... .++|+++|+||+|+.. .+.+..++...++..+++ +++++||+++.|+
T Consensus 104 ~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 182 (201)
T 2q3h_A 104 PSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNL 182 (201)
T ss_dssp HHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCH
Confidence 99999986 6988887755 4799999999999864 356778889999999887 8999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 040835 147 ELAFLTVLTEIYRIVS 162 (206)
Q Consensus 147 ~~~~~~l~~~i~~~~~ 162 (206)
+++|.++++.+.+...
T Consensus 183 ~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 183 KEVFDAAIVAGIQYSD 198 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999887654
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=6.3e-31 Score=192.47 Aligned_cols=159 Identities=28% Similarity=0.351 Sum_probs=132.8
Q ss_pred CccCCCCCHHHHHHHHhcCCC--CCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhHhcCCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARDEF--SLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d 77 (206)
|+|.+|||||||+++|++... ...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+++.+|++|+|||
T Consensus 42 lvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVyd 120 (211)
T 2g3y_A 42 LIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYS 120 (211)
T ss_dssp EECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEE
T ss_pred EECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEE
Confidence 589999999999999997443 3333 3456666667778888889999999999876 45566778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 78 ITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 78 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+..++...++..+++++++|||+++.||+++|.++++.
T Consensus 121 vt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 121 ITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp TTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999988776543 3579999999999997767788888888888999999999999999999999999998
Q ss_pred HHHH
Q 040835 157 IYRI 160 (206)
Q Consensus 157 i~~~ 160 (206)
+...
T Consensus 201 i~~~ 204 (211)
T 2g3y_A 201 VRLR 204 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7543
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=8.7e-31 Score=189.40 Aligned_cols=156 Identities=28% Similarity=0.501 Sum_probs=137.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++|+|+|+++
T Consensus 23 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 101 (194)
T 2atx_A 23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN 101 (194)
T ss_dssp EEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC
Confidence 589999999999999999988877777766554 3456667778999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
++++..+. .|+..+.... .++|+++|+||+|+... +.+..++...++..+++ +++++||+++.|+
T Consensus 102 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 180 (194)
T 2atx_A 102 PASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL 180 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCH
Confidence 99999887 7988887754 47999999999999643 46778889999999997 8999999999999
Q ss_pred HHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIY 158 (206)
Q Consensus 147 ~~~~~~l~~~i~ 158 (206)
+++|+++.+.++
T Consensus 181 ~~l~~~l~~~i~ 192 (194)
T 2atx_A 181 KTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.98 E-value=2.5e-31 Score=190.79 Aligned_cols=157 Identities=29% Similarity=0.506 Sum_probs=136.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.|...+..+++.+|++|+|+|+++
T Consensus 12 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (184)
T 1m7b_A 12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 90 (184)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC
Confidence 589999999999999999998877778766555 3456677788999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcC-CeEEEeccC-CCCC
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEG-LCFMETSAL-ESTN 145 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~ 145 (206)
++++..+ ..|+..+.... .+.|+++|+||+|+... +.+..+++..++..++ ++++++||+ ++.|
T Consensus 91 ~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~g 169 (184)
T 1m7b_A 91 PETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 169 (184)
T ss_dssp HHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcC
Confidence 9999988 67988887654 57999999999999642 5678888999999887 789999999 6899
Q ss_pred HHHHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEIYR 159 (206)
Q Consensus 146 v~~~~~~l~~~i~~ 159 (206)
++++|..+++.+++
T Consensus 170 i~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 170 VRDIFHVATLACVN 183 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=3.6e-31 Score=189.84 Aligned_cols=158 Identities=28% Similarity=0.490 Sum_probs=137.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 10 ~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 88 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS 88 (186)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC
Confidence 589999999999999999888777777765444 4556778888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+. .|+..+.... .+.|+++|+||+|+... +.+..++...++..+++ +++++||+++.|+
T Consensus 89 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 167 (186)
T 1mh1_A 89 PASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167 (186)
T ss_dssp HHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred hhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCH
Confidence 99999887 6888887665 37999999999998642 46778888899999987 9999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYRI 160 (206)
Q Consensus 147 ~~~~~~l~~~i~~~ 160 (206)
+++|.++.+.+.+.
T Consensus 168 ~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 168 KTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887643
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=3e-30 Score=185.94 Aligned_cols=161 Identities=36% Similarity=0.544 Sum_probs=129.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+... ...+..++..+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 26 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 104 (190)
T 3con_A 26 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN 104 (190)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcC
Confidence 589999999999999999888777777655443 4566677888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
..++..+..|+..+..... .++|+++|+||+|+.. +....+++..++..++++++++||+++.|++++|.+|.+.+.+
T Consensus 105 ~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 105 SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999888776542 5799999999999876 5667888999999999999999999999999999999999877
Q ss_pred Hhhh
Q 040835 160 IVSK 163 (206)
Q Consensus 160 ~~~~ 163 (206)
.+.+
T Consensus 184 ~~~~ 187 (190)
T 3con_A 184 YRMK 187 (190)
T ss_dssp HC--
T ss_pred HHHh
Confidence 6443
No 68
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=5.6e-31 Score=192.26 Aligned_cols=157 Identities=29% Similarity=0.511 Sum_probs=137.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.|...+..+++.+|++|+|||+++
T Consensus 33 vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~ 111 (205)
T 1gwn_A 33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 111 (205)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC
Confidence 589999999999999999999877778866555 3456667778999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCc------------CCCCCHHHHHHHHHHcC-CeEEEeccC-CCCC
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLET------------LRAVPTEDAKEFAEKEG-LCFMETSAL-ESTN 145 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~ 145 (206)
+.++..+ ..|+..+.... .+.|+++|+||+|+.. .+.+..+++..++..++ ++++++||+ ++.|
T Consensus 112 ~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~g 190 (205)
T 1gwn_A 112 PETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190 (205)
T ss_dssp HHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcC
Confidence 9999988 67988887654 5799999999999964 25678888999999887 699999999 6899
Q ss_pred HHHHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEIYR 159 (206)
Q Consensus 146 v~~~~~~l~~~i~~ 159 (206)
++++|..+++.+++
T Consensus 191 v~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 191 VRDIFHVATLACVN 204 (205)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998774
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=8.1e-31 Score=192.57 Aligned_cols=159 Identities=32% Similarity=0.512 Sum_probs=118.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 39 vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 117 (214)
T 2j1l_A 39 LVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117 (214)
T ss_dssp EEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC
Confidence 589999999999999999888777777755433 4556778888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+. .|+..+.... .++|+++|+||+|+... +.+..++...++..+++ +++++||+++.|+
T Consensus 118 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 196 (214)
T 2j1l_A 118 PNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196 (214)
T ss_dssp HHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence 99999886 6888887654 57999999999999653 35677888999999997 8999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 040835 147 ELAFLTVLTEIYRIV 161 (206)
Q Consensus 147 ~~~~~~l~~~i~~~~ 161 (206)
+++|.++++.+++..
T Consensus 197 ~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 197 HAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=2.4e-30 Score=188.23 Aligned_cols=157 Identities=28% Similarity=0.486 Sum_probs=137.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 30 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (201)
T 2gco_A 30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 108 (201)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC
Confidence 5899999999999999999988877787766654 346678888999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
++++..+ ..|+..+.... .+.|+++|+||+|+... +.+..++...++...+. +++++||+++.|+
T Consensus 109 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 187 (201)
T 2gco_A 109 PDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187 (201)
T ss_dssp HHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCH
Confidence 9999988 67888777654 47999999999999653 45778888999999988 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|.++.+.+++
T Consensus 188 ~~l~~~i~~~~l~ 200 (201)
T 2gco_A 188 REVFEMATRAGLQ 200 (201)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 71
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-30 Score=184.75 Aligned_cols=156 Identities=31% Similarity=0.406 Sum_probs=135.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.+.. .....++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS 86 (172)
T ss_dssp EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcC
Confidence 5899999999999999998887777777665443 445667788899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
+.+++.+..|+..+..... .+.|+++|+||+|+...+.+...+...++..++++++++||+++.|++++|+++.+.+
T Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 87 RQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999888888877765432 4789999999999987677888888999999999999999999999999999998754
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=4.6e-30 Score=180.40 Aligned_cols=156 Identities=35% Similarity=0.570 Sum_probs=136.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|+|||||+++|++..+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++++|+|+++
T Consensus 8 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (166)
T 2ce2_X 8 VVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN 86 (166)
T ss_dssp EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCC
Confidence 589999999999999999988777777655433 4556677888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHAD-KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
..++..+..|+..+..... .+.|+++++||+|+.. +....++...++..++++++++||+++.|++++|.++.+.+.
T Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 87 TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999988776542 4799999999999876 566788899999999999999999999999999999998875
No 73
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=2.4e-31 Score=195.77 Aligned_cols=161 Identities=30% Similarity=0.501 Sum_probs=139.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECC-eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHH-KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|++..+...+.++.+.+.......... ..+.+.+|||||++.+...+..++..+|++|+|+|++
T Consensus 16 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 16 LIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVT 95 (218)
T ss_dssp EECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCC
Confidence 589999999999999999888877778877766666555443 3488999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
++.++..+..|+..+......++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|.++.+.+..
T Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 96 SRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp CHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999887766679999999999998767888888889999999999999999999999999999988865
Q ss_pred Hh
Q 040835 160 IV 161 (206)
Q Consensus 160 ~~ 161 (206)
..
T Consensus 176 ~~ 177 (218)
T 4djt_A 176 RP 177 (218)
T ss_dssp CT
T ss_pred cc
Confidence 53
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.3e-30 Score=187.26 Aligned_cols=157 Identities=29% Similarity=0.485 Sum_probs=131.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 30 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (207)
T 2fv8_A 30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS 108 (207)
T ss_dssp EEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC
Confidence 5899999999999999999988777777665554 346678888999999999999999999999999999999999999
Q ss_pred hhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+ ..|+..+.... .+.|+++|+||+|+... +.+..++...++...+. +++++||+++.|+
T Consensus 109 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 187 (207)
T 2fv8_A 109 PDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV 187 (207)
T ss_dssp HHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCH
Confidence 9999888 67888877654 57999999999999653 45677888899999887 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|.+|.+.+++
T Consensus 188 ~el~~~l~~~i~~ 200 (207)
T 2fv8_A 188 REVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=8.4e-30 Score=184.18 Aligned_cols=160 Identities=28% Similarity=0.365 Sum_probs=130.4
Q ss_pred CccCCCCCHHHHHHHHhcCC--CCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh-hhhhhHhHhcCCcEEEEEee
Q 040835 1 LIGDSAVGKSQLLARFARDE--FSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-YRAVTSAYYRGAVGAMLVYD 77 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d 77 (206)
|+|++|||||||+++|++.. +...+ ++++.+.....+.+++..+.+.+|||+|.+. +..++..+++.+|++|+|||
T Consensus 11 lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~d 89 (192)
T 2cjw_A 11 LIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYS 89 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEE
Confidence 58999999999999999633 33333 3346666667778888889999999999776 45567788899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 78 ITKRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 78 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+++++++..+..|+..+.... ..++|+++|+||+|+...+.+..++...++..++++++++||+++.||+++|.++.+.
T Consensus 90 v~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~ 169 (192)
T 2cjw_A 90 ITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQ 169 (192)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHH
Confidence 999999999999988776543 3579999999999997667788888888888889999999999999999999999998
Q ss_pred HHHHh
Q 040835 157 IYRIV 161 (206)
Q Consensus 157 i~~~~ 161 (206)
+....
T Consensus 170 ~~~~~ 174 (192)
T 2cjw_A 170 VRLRR 174 (192)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 86543
No 76
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=3.7e-33 Score=202.78 Aligned_cols=159 Identities=52% Similarity=0.838 Sum_probs=134.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 38 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 117 (199)
T 3l0i_B 38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 117 (199)
T ss_dssp EECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC
Confidence 58999999999999999998888878888888888888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.++..+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||+++.|++++|.+|.+.+.+
T Consensus 118 ~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 118 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987776789999999999998767777777888999999999999999999999999999876643
No 77
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=5.4e-29 Score=180.82 Aligned_cols=164 Identities=71% Similarity=1.111 Sum_probs=144.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.++++++|+|+++
T Consensus 10 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK 89 (199)
T ss_dssp EESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC
Confidence 58999999999999999999888888888888877888889988999999999999998889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
..++..+..|+..+......+.|+++++||+|+...+....++++.++...++.++++|++++.|++++|+++.+.+.+.
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 90 HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99998888898877665445789999999999987677788889999999999999999999999999999999999876
Q ss_pred hhhh
Q 040835 161 VSKK 164 (206)
Q Consensus 161 ~~~~ 164 (206)
...+
T Consensus 170 ~~~~ 173 (199)
T 2f9l_A 170 VSQK 173 (199)
T ss_dssp HHTS
T ss_pred Hhhc
Confidence 5443
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=8.2e-31 Score=193.38 Aligned_cols=160 Identities=31% Similarity=0.525 Sum_probs=141.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 20 v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (221)
T 3gj0_A 20 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99 (221)
T ss_dssp EEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC
Confidence 58999999999999988888777778888889988888889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+.++..+..|+..+.... .++|+++|+||+|+..... . .+...++...+++++++||+++.|++++|.++.+.+...
T Consensus 100 ~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 100 RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999988765 4799999999999965332 2 256677888899999999999999999999999988766
Q ss_pred hhh
Q 040835 161 VSK 163 (206)
Q Consensus 161 ~~~ 163 (206)
...
T Consensus 177 ~~~ 179 (221)
T 3gj0_A 177 PNL 179 (221)
T ss_dssp TTC
T ss_pred ccc
Confidence 443
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.3e-30 Score=188.64 Aligned_cols=159 Identities=22% Similarity=0.258 Sum_probs=128.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------ccccceeeEEEEE-EECCeEEEEEEEeCCCchhhhhhhHhHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------KATIGVEFQTKTL-VIHHKNVKAQIWDTAGQERYRAVTSAYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 68 (206)
|+|++|||||||++.+.+ .+...+ .++.+.++....+ .+++..+.+.+|||||++.+...+..+++.
T Consensus 19 vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 97 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRG 97 (198)
T ss_dssp EECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhc
Confidence 589999999999976665 443332 2344444433333 455678899999999999999999999999
Q ss_pred CcEEEEEeeCC------ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccC
Q 040835 69 AVGAMLVYDIT------KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSAL 141 (206)
Q Consensus 69 ~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 141 (206)
+|++|+|||++ +.+++..+..|+..+.. ...++|+++|+||+|+.. ....+++..++..+++ +++++||+
T Consensus 98 ~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (198)
T 3t1o_A 98 VDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVAT 174 (198)
T ss_dssp CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGG
T ss_pred CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecC
Confidence 99999999999 55677778888877633 236799999999999965 4778899999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhh
Q 040835 142 ESTNVELAFLTVLTEIYRIVSK 163 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~i~~~~~~ 163 (206)
++.|++++|.++.+.+.+...+
T Consensus 175 ~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 175 EGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp GTBTHHHHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999887643
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=5.7e-31 Score=188.23 Aligned_cols=156 Identities=31% Similarity=0.546 Sum_probs=120.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|+|||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 13 v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (182)
T 3bwd_D 13 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLIS 91 (182)
T ss_dssp EECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCC
Confidence 5899999999999999998887777776554432 223445567788899999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCC----------CCHHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRA----------VPTEDAKEFAEKEGL-CFMETSALESTNVEL 148 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 148 (206)
+.++..+. .|+..+.... .+.|+++|+||+|+...+. +..++...++..+++ +++++||+++.|+++
T Consensus 92 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 92 KASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKG 170 (182)
T ss_dssp HHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHH
Confidence 99999987 6988887765 4799999999999864333 467888899999986 899999999999999
Q ss_pred HHHHHHHHHH
Q 040835 149 AFLTVLTEIY 158 (206)
Q Consensus 149 ~~~~l~~~i~ 158 (206)
+|+++.+.++
T Consensus 171 l~~~l~~~i~ 180 (182)
T 3bwd_D 171 VFDAAIRVVL 180 (182)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=1.8e-30 Score=188.28 Aligned_cols=156 Identities=18% Similarity=0.300 Sum_probs=124.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|++..+.. .+.++.+..... ++...+.+.+|||||++.+...+..+++.+|++|+|||++
T Consensus 22 v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~ 97 (199)
T 4bas_A 22 MCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSS 97 (199)
T ss_dssp EECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 58999999999999999999887 677777754433 2345688999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC--------CCCcEEEEEeCCCCCcCCCCCHHHHHHH------HHHcCCeEEEeccCCCCC
Q 040835 80 KRQSFDNVARWLEELRGHAD--------KNIIIMLVGNKSDLETLRAVPTEDAKEF------AEKEGLCFMETSALESTN 145 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~ 145 (206)
+++++..+..|+..+..... .++|+++|+||+|+..... .+++... +...+++++++||+++.|
T Consensus 98 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 175 (199)
T 4bas_A 98 DHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTG 175 (199)
T ss_dssp CGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBT
T ss_pred cHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccC
Confidence 99999999888888765421 2799999999999975322 2222211 134677899999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 040835 146 VELAFLTVLTEIYRIVS 162 (206)
Q Consensus 146 v~~~~~~l~~~i~~~~~ 162 (206)
|+++|++|.+.+.+...
T Consensus 176 v~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 176 VHEGFSWLQETASRQSG 192 (199)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999887643
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=4.6e-30 Score=187.20 Aligned_cols=155 Identities=28% Similarity=0.488 Sum_probs=132.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|+.+.+...+.++.+ ......+.+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 35 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 113 (204)
T 4gzl_A 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 113 (204)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999988877777754 3444566677788889999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLR------------AVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+. .|+..+.... .+.|+++|+||+|+.... .+..++...++...+. +++++||++++|+
T Consensus 114 ~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 192 (204)
T 4gzl_A 114 PASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
T ss_dssp HHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCH
Confidence 99999987 7888887765 679999999999986432 3677888899999886 5999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 147 ELAFLTVLTEI 157 (206)
Q Consensus 147 ~~~~~~l~~~i 157 (206)
+++|+++++.+
T Consensus 193 ~~l~~~l~~~~ 203 (204)
T 4gzl_A 193 KTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=7.6e-30 Score=179.43 Aligned_cols=152 Identities=19% Similarity=0.355 Sum_probs=118.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+++.+.. +.||.+... ..+ ......+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 5 ~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp EECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEE--ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEE--EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 58999999999999999887754 456655332 223 3345889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+... ...+.|+++|+||+|+... ...++...... ..+++++++||+++.|++++|+++.
T Consensus 80 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 99999998888877553 2357999999999999652 22333322221 1345799999999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+.+
T Consensus 158 ~~i~~ 162 (164)
T 1r8s_A 158 NQLRN 162 (164)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 87654
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=5e-29 Score=180.94 Aligned_cols=149 Identities=21% Similarity=0.257 Sum_probs=116.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+. .+.+|.+.+. ..+.+++ +.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 30 lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~ 104 (198)
T 1f6b_A 30 FLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD 104 (198)
T ss_dssp EEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC
Confidence 5899999999999999988764 4556655543 3444554 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----------------cCCeEEEeccCC
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----------------EGLCFMETSALE 142 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~ 142 (206)
++++..+..|+..+.... ..++|+++|+||+|+.. .+..+++.+++.. .+++++++||++
T Consensus 105 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 182 (198)
T 1f6b_A 105 HERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 182 (198)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTT
T ss_pred HHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCC
Confidence 999999999988876542 35799999999999964 5567777776652 245799999999
Q ss_pred CCCHHHHHHHHHHH
Q 040835 143 STNVELAFLTVLTE 156 (206)
Q Consensus 143 ~~~v~~~~~~l~~~ 156 (206)
++|++++|+++.+.
T Consensus 183 g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 183 RQGYGEGFRWMAQY 196 (198)
T ss_dssp TBSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999754
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=2.4e-29 Score=177.97 Aligned_cols=152 Identities=22% Similarity=0.329 Sum_probs=120.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+. .+.++.+... ..+.++ ...+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 12 v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 86 (171)
T 1upt_A 12 ILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD 86 (171)
T ss_dssp EECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC
Confidence 5899999999999999998874 3455655433 334444 5789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFA-----EKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++..+..|+..+.... ..+.|+++|+||+|+.... ...++.... ...+++++++||+++.|++++|+++.
T Consensus 87 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 87 RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp CTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 999998888887765542 2579999999999996532 223332222 22356899999999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+.+
T Consensus 165 ~~i~~ 169 (171)
T 1upt_A 165 ETLKS 169 (171)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88754
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=8.3e-29 Score=178.26 Aligned_cols=153 Identities=22% Similarity=0.423 Sum_probs=122.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+.++.. + ....+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 27 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 102 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD 102 (188)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC
Confidence 58999999999999999998887777877766543 2 2346789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..+.|+++|+||+|+... ...++...... ..+++++++||+++.|++++|++|.
T Consensus 103 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~ 180 (188)
T 1zd9_A 103 QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180 (188)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHH
Confidence 999999988888776532 257999999999999642 22333322221 2345799999999999999999998
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+.+
T Consensus 181 ~~~~~ 185 (188)
T 1zd9_A 181 QHSKS 185 (188)
T ss_dssp HTCC-
T ss_pred HHHHh
Confidence 76643
No 87
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=6.6e-28 Score=174.06 Aligned_cols=157 Identities=71% Similarity=1.123 Sum_probs=141.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++++++|+|.++
T Consensus 34 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 113 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113 (191)
T ss_dssp EEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred EECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence 58999999999999999999988888888888888888888988999999999999988889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i 157 (206)
..+++.+..|+..+......+.|+++++||+|+...+.....+++.++...++.++++|++++.|++++|+++.+.+
T Consensus 114 ~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 114 HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 99998888888877655445789999999999977667778889999999999999999999999999999998765
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=2.5e-28 Score=175.30 Aligned_cols=153 Identities=24% Similarity=0.348 Sum_probs=123.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++.. ...+.+|.+... ..+.++ ...+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 23 v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 97 (186)
T 1ksh_A 23 MLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97 (186)
T ss_dssp EECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999888 566667766443 334443 5789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++..+..|+..+.... ..+.|+++|+||+|+... ...++..+... ..+++++++||+++.|++++|+++.
T Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (186)
T 1ksh_A 98 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL 175 (186)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence 999999988888776542 357999999999999653 23344333322 2356899999999999999999999
Q ss_pred HHHHHH
Q 040835 155 TEIYRI 160 (206)
Q Consensus 155 ~~i~~~ 160 (206)
+.+.+.
T Consensus 176 ~~i~~~ 181 (186)
T 1ksh_A 176 DDISSR 181 (186)
T ss_dssp HHHHTC
T ss_pred HHHHhc
Confidence 887654
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=175.88 Aligned_cols=153 Identities=21% Similarity=0.332 Sum_probs=123.6
Q ss_pred CccCCCCCHHHHHHHHhcCC-CCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC
Q 040835 1 LIGDSAVGKSQLLARFARDE-FSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT 79 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 79 (206)
|+|.+|||||||+++|++.. +...+.++.+. ....+.++ +..+.+|||||++.+...+..+++.+|++|+|+|++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 101 (190)
T 2h57_A 26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS 101 (190)
T ss_dssp EEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETT
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECC
Confidence 58999999999999999987 45556666553 33344443 478999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhcCC---CCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHH
Q 040835 80 KRQSFDNVARWLEELRGHAD---KNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 80 ~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
++.++..+..|+..+..... .+.|+++|+||+|+.. ....+++..... ..+++++++||+++.|++++|+
T Consensus 102 ~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 179 (190)
T 2h57_A 102 DRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVD 179 (190)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHH
Confidence 99999999888888766543 4799999999999964 334556665553 2357899999999999999999
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
+|.+.+.+
T Consensus 180 ~l~~~i~~ 187 (190)
T 2h57_A 180 WLQDQIQT 187 (190)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 99987643
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=2.2e-28 Score=176.40 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=122.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+. .+.++.+.+ ...+.+++ ..+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 28 ~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 102 (190)
T 1m2o_B 28 FLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD 102 (190)
T ss_dssp EEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 5899999999999999998874 445565553 34455554 789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH------------cCCeEEEeccCCCCCHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK------------EGLCFMETSALESTNVE 147 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~v~ 147 (206)
++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++.+.... .+++++++||+++.|++
T Consensus 103 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 180 (190)
T 1m2o_B 103 PERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 180 (190)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHH
T ss_pred hHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHH
Confidence 999999999988876542 35799999999999965 4566666665442 34679999999999999
Q ss_pred HHHHHHHHH
Q 040835 148 LAFLTVLTE 156 (206)
Q Consensus 148 ~~~~~l~~~ 156 (206)
++|+++.+.
T Consensus 181 ~l~~~l~~~ 189 (190)
T 1m2o_B 181 EAFQWLSQY 189 (190)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999998753
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.5e-28 Score=174.17 Aligned_cols=152 Identities=21% Similarity=0.377 Sum_probs=119.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|+++.+. .+.+|.+.+.. .+.++ +..+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 21 v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 95 (187)
T 1zj6_A 21 IVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95 (187)
T ss_dssp EEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCCC-cCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 5899999999999999988776 55666564433 33443 4789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++..... ..+++++++||+++.|++++|++++
T Consensus 96 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (187)
T 1zj6_A 96 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 173 (187)
T ss_dssp TTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence 999999999988876642 25799999999999964 334455544432 2356899999999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+..
T Consensus 174 ~~~~~ 178 (187)
T 1zj6_A 174 SRLKI 178 (187)
T ss_dssp HHHCC
T ss_pred HHHHH
Confidence 87643
No 92
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.3e-27 Score=186.17 Aligned_cols=157 Identities=27% Similarity=0.472 Sum_probs=137.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus 160 i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 238 (332)
T 2wkq_A 160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 238 (332)
T ss_dssp EEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred EECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC
Confidence 589999999999999999988777777765444 4556778888999999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcC------------CCCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETL------------RAVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+. .|+..+.... .++|+++|+||+|+... +.+..++...++...++ +++++||+++.|+
T Consensus 239 ~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 317 (332)
T 2wkq_A 239 PASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317 (332)
T ss_dssp HHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCH
Confidence 99999887 6888877655 37999999999998542 56788889999999997 8999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|..+.+.++.
T Consensus 318 ~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 318 KTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=5.3e-28 Score=173.10 Aligned_cols=152 Identities=24% Similarity=0.346 Sum_probs=118.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|.+..+ ..+.++.+.+. ..+.++ .+.+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 21 ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 95 (181)
T 1fzq_A 21 LLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95 (181)
T ss_dssp EEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC
Confidence 589999999999999998765 33456656432 334444 5789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+... ...+.|+++|+||+|+.... ..+++..... ..+++++++||++++|++++|+++.
T Consensus 96 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 96 RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp GGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 99999998888776543 23579999999999996532 2333332221 2245799999999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+.+
T Consensus 174 ~~~~~ 178 (181)
T 1fzq_A 174 KNVNA 178 (181)
T ss_dssp HTC--
T ss_pred HHHHh
Confidence 87754
No 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2e-28 Score=175.15 Aligned_cols=149 Identities=21% Similarity=0.394 Sum_probs=120.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+ ..+.++.+.... .+.++ +..+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 26 v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 100 (181)
T 2h17_A 26 IVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 100 (181)
T ss_dssp EEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999999887 455566665543 33343 3789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++..... ..+++++++||+++.|++++|++|.
T Consensus 101 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 101 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMM 178 (181)
T ss_dssp TTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 999999988888776542 35799999999999964 233444444432 2355899999999999999999987
Q ss_pred HH
Q 040835 155 TE 156 (206)
Q Consensus 155 ~~ 156 (206)
+.
T Consensus 179 ~~ 180 (181)
T 2h17_A 179 SR 180 (181)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=3.8e-29 Score=180.73 Aligned_cols=151 Identities=21% Similarity=0.373 Sum_probs=113.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+++.+. .+.||.+.. ...+.. ..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 34 v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 108 (192)
T 2b6h_A 34 MVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 108 (192)
T ss_dssp EEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC
Confidence 5899999999999999988775 345555532 223333 45789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..+.|+++|+||+|+... ...+++..... ..+++++++||+++.|++++|+++.
T Consensus 109 ~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 109 RERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 999999988888775532 357999999999999642 22333322211 1245799999999999999999999
Q ss_pred HHHH
Q 040835 155 TEIY 158 (206)
Q Consensus 155 ~~i~ 158 (206)
+.+.
T Consensus 187 ~~i~ 190 (192)
T 2b6h_A 187 HELS 190 (192)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8763
No 96
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=4.4e-29 Score=179.14 Aligned_cols=158 Identities=22% Similarity=0.405 Sum_probs=115.9
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCCCccccceeeEEEEEEE---CCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLDSKATIGVEFQTKTLVI---HHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLV 75 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 75 (206)
|+|++|||||||+++|.+. .+...+.+|.+.++....+.+ ++..+.+.+|||+|++.+..++..+++.++++++|
T Consensus 7 ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 86 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAV 86 (184)
T ss_dssp EESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEE
Confidence 5899999999999999985 455556677776665554433 23567899999999999999999999999999999
Q ss_pred eeCCCh-hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC---HHHHHHHHHHcCCe----EEEeccCCCC-CH
Q 040835 76 YDITKR-QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP---TEDAKEFAEKEGLC----FMETSALEST-NV 146 (206)
Q Consensus 76 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~v 146 (206)
+|++++ .++..+..|+..+.... .+.|+++|+||+|+...+.+. .+....++..++++ ++++||+++. ++
T Consensus 87 ~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 165 (184)
T 2zej_A 87 YDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDAL 165 (184)
T ss_dssp EEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHH
T ss_pred EeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhH
Confidence 999997 47888899998876654 478999999999986422221 22334555556776 9999999996 89
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
++++..+.+.+.+
T Consensus 166 ~~l~~~i~~~~~~ 178 (184)
T 2zej_A 166 AKLRKTIINESLN 178 (184)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 9999988877654
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1.5e-30 Score=189.60 Aligned_cols=155 Identities=28% Similarity=0.508 Sum_probs=129.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 35 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (204)
T 3th5_A 35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 113 (204)
Confidence 689999999999999999888777766654433 3445566677888999999999999999999999999999999999
Q ss_pred hhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCC------------CCCHHHHHHHHHHcCC-eEEEeccCCCCCH
Q 040835 81 RQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLR------------AVPTEDAKEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 81 ~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
+.++..+. .|+..+.... .++|+++|+||+|+.... .+..++...++..+++ +++++||+++.|+
T Consensus 114 ~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi 192 (204)
T 3th5_A 114 PASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192 (204)
Confidence 99998886 7877776654 379999999999996432 4555677788888887 8999999999999
Q ss_pred HHHHHHHHHHH
Q 040835 147 ELAFLTVLTEI 157 (206)
Q Consensus 147 ~~~~~~l~~~i 157 (206)
+++|+++.+.+
T Consensus 193 ~~l~~~l~~~i 203 (204)
T 3th5_A 193 KTVFDEAIRAV 203 (204)
Confidence 99999998765
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-27 Score=170.78 Aligned_cols=154 Identities=21% Similarity=0.354 Sum_probs=119.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|+++.+ ..+.++.+... ..+.++ +..+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 23 v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 97 (183)
T 1moz_A 23 ILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD 97 (183)
T ss_dssp EEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC
Confidence 589999999999999998777 45556656443 333443 4789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..+.|+++|+||+|+.. ....+++...... .+++++++||+++.|++++|+++.
T Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 98 KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 999999999888876543 36799999999999864 2334444443322 234799999999999999999999
Q ss_pred HHHHHHh
Q 040835 155 TEIYRIV 161 (206)
Q Consensus 155 ~~i~~~~ 161 (206)
+.+.+++
T Consensus 176 ~~~~~~q 182 (183)
T 1moz_A 176 DVIKEEQ 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9887653
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=3.8e-28 Score=175.94 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=116.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEE-CCeEEEEEEEeCCCchhhhhhh---HhHhcCCcEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVI-HHKNVKAQIWDTAGQERYRAVT---SAYYRGAVGAMLVY 76 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~~~~~d~~i~v~ 76 (206)
|+|++|||||||++++.+. +..........+.......+ ++..+.+.+|||+|++.|.... ..+++.+|++|+||
T Consensus 25 ~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~ 103 (196)
T 3llu_A 25 LMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI 103 (196)
T ss_dssp EEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEE
T ss_pred EECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEE
Confidence 5899999999999988774 33332222222222222233 2566889999999999987776 89999999999999
Q ss_pred eCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc-------CCCCCHHHHHHHHH----HcCCeEEEeccCCC
Q 040835 77 DITKR--QSFDNVARWLEELRGHADKNIIIMLVGNKSDLET-------LRAVPTEDAKEFAE----KEGLCFMETSALES 143 (206)
Q Consensus 77 d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~ 143 (206)
|++++ +++..+..|+..+.... .+.|+++|+||+|+.. .+.+..++...++. ..+++++++||++
T Consensus 104 d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~- 181 (196)
T 3llu_A 104 DAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD- 181 (196)
T ss_dssp ETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-
T ss_pred ECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-
Confidence 99997 67777777777764433 5799999999999743 23344455667777 6688999999999
Q ss_pred CCHHHHHHHHHHHH
Q 040835 144 TNVELAFLTVLTEI 157 (206)
Q Consensus 144 ~~v~~~~~~l~~~i 157 (206)
.||+++|..+++.+
T Consensus 182 ~~v~~~f~~l~~~l 195 (196)
T 3llu_A 182 HSIFEAFSKVVQKL 195 (196)
T ss_dssp THHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh
Confidence 99999999998865
No 100
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=9.6e-29 Score=177.94 Aligned_cols=153 Identities=19% Similarity=0.304 Sum_probs=119.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|....+.. +.+|.+... ..+..+ ...+.+|||||++.+...+..+++.+|++|+|+|+++
T Consensus 27 v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 101 (189)
T 2x77_A 27 MLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD 101 (189)
T ss_dssp EEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC
Confidence 58999999999999998877643 455655433 333333 5789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHH-----HHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFA-----EKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..+.|+++|+||+|+.... ..++..... ...+++++++||+++.|++++|+++.
T Consensus 102 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (189)
T 2x77_A 102 RDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV 179 (189)
T ss_dssp CTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence 999999888887765543 3579999999999996532 223332222 22345799999999999999999999
Q ss_pred HHHHHH
Q 040835 155 TEIYRI 160 (206)
Q Consensus 155 ~~i~~~ 160 (206)
+.+.+.
T Consensus 180 ~~i~~~ 185 (189)
T 2x77_A 180 ERLREQ 185 (189)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888654
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=5.7e-27 Score=165.28 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=109.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhHhc--CCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR------AVTSAYYR--GAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~ 72 (206)
|+|++|||||||+++|.+..+.....++.+.......+..++ ..+.+|||||++.+. .+...++. .+|++
T Consensus 8 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (165)
T 2wji_A 8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLV 85 (165)
T ss_dssp EECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEE
Confidence 589999999999999999776555545444444444444443 679999999987764 34456664 89999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
++|+|+++.+. ...|+..+.. .++|+++|+||+|+...+.+.. +...++..++++++++||++++|++++|.+
T Consensus 86 i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 86 VNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp EEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred EEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHH
Confidence 99999998643 3446666654 3689999999999864344332 367788888999999999999999999999
Q ss_pred HHHHH
Q 040835 153 VLTEI 157 (206)
Q Consensus 153 l~~~i 157 (206)
+.+.+
T Consensus 159 l~~~~ 163 (165)
T 2wji_A 159 ISIAV 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98754
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=2.3e-26 Score=170.36 Aligned_cols=162 Identities=20% Similarity=0.175 Sum_probs=113.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc------hhh---hhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ------ERY---RAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~~~~~~d~ 71 (206)
|+|.+|||||||+++|++..+.....+..+.......... ....+.+|||||. +.. ...+..++..+|+
T Consensus 34 vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 111 (228)
T 2qu8_A 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDH--KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGV 111 (228)
T ss_dssp EECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEE--TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEE
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeec--CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccE
Confidence 5899999999999999998774322222122222222222 2367999999998 331 1223456788999
Q ss_pred EEEEeeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH---HHHHHHHHcC--CeEEEeccCCCC
Q 040835 72 AMLVYDITKRQSFD--NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE---DAKEFAEKEG--LCFMETSALEST 144 (206)
Q Consensus 72 ~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~ 144 (206)
+|+|+|++++.++. ....|+..+.... .+.|+++|+||+|+...+.+... ....++...+ ++++++||+++.
T Consensus 112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 190 (228)
T 2qu8_A 112 ILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGV 190 (228)
T ss_dssp EEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCT
T ss_pred EEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCC
Confidence 99999999987754 2345666665432 37999999999999765666554 4566667776 899999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhhh
Q 040835 145 NVELAFLTVLTEIYRIVSKKA 165 (206)
Q Consensus 145 ~v~~~~~~l~~~i~~~~~~~~ 165 (206)
|++++|.+|.+.+.+.+...+
T Consensus 191 gi~~l~~~l~~~i~~~~~~~~ 211 (228)
T 2qu8_A 191 GVEQAKITACELLKNDQAESI 211 (228)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987765543
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=8.7e-27 Score=170.86 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=108.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe-EEEEEEEeCCCchhhhh-hhHhHhcCCcEEEEEeeC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK-NVKAQIWDTAGQERYRA-VTSAYYRGAVGAMLVYDI 78 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~v~d~ 78 (206)
|+|++|||||||+++|++..+...+.++ +.... .+.+++. .+.+.+|||||++.+.. ++..+++.+|++|+|+|+
T Consensus 12 vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~ 88 (214)
T 2fh5_B 12 FVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 88 (214)
T ss_dssp EECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEEC
Confidence 5899999999999999998887666543 33333 3455543 68899999999999987 788899999999999999
Q ss_pred CChh-hHHHHHH-HHHHHHh--cCCCCCcEEEEEeCCCCCcCCCCCH--HHHHHHHH-----------------------
Q 040835 79 TKRQ-SFDNVAR-WLEELRG--HADKNIIIMLVGNKSDLETLRAVPT--EDAKEFAE----------------------- 129 (206)
Q Consensus 79 ~~~~-s~~~~~~-~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~----------------------- 129 (206)
++.. ++..... |...+.. ....++|+++|+||+|+........ +.+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~ 168 (214)
T 2fh5_B 89 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 168 (214)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccc
Confidence 9854 4555544 4444433 2235799999999999965332110 11111111
Q ss_pred ----------Hc--CCeEEEeccCCC------CCHHHHHHHHHHH
Q 040835 130 ----------KE--GLCFMETSALES------TNVELAFLTVLTE 156 (206)
Q Consensus 130 ----------~~--~~~~~~~Sa~~~------~~v~~~~~~l~~~ 156 (206)
.+ +++|++|||+++ .||+++|++|.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 169 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999865
No 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.3e-27 Score=183.28 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=116.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC---CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh---hhHhHhcCCcEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL---DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA---VTSAYYRGAVGAML 74 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~i~ 74 (206)
++|..|||||||++++.++.... ...+|++..+.. ++ ..+.++||||+|+++|.. .+..++++++++|+
T Consensus 4 llGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~Il 78 (331)
T 3r7w_B 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVY 78 (331)
T ss_dssp EECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEE
T ss_pred EECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEE
Confidence 58999999999999888654322 245666666653 22 348899999999999964 46899999999999
Q ss_pred EeeCCCh--hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC-------CCCCHHHHHHHHHH----cCCeEEEeccC
Q 040835 75 VYDITKR--QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETL-------RAVPTEDAKEFAEK----EGLCFMETSAL 141 (206)
Q Consensus 75 v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~ 141 (206)
|||++++ +.+.....|+..+.... +++|+++++||+|+..+ +.+..++.+++++. +++++|+|||+
T Consensus 79 V~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 79 VIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp ECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 9999997 33444444455544433 57999999999999653 23455556667765 67899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 040835 142 ESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~i~~~~~ 162 (206)
+ .+|.++|..+++.+....+
T Consensus 158 d-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTTHH
T ss_pred C-CcHHHHHHHHHHHHHhhHH
Confidence 8 5899999999988765544
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=3.4e-26 Score=176.42 Aligned_cols=154 Identities=20% Similarity=0.305 Sum_probs=120.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC---CCccccceeeEEEEEEECCeEEEEEEEeCCCchhh-----hhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL---DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY-----RAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~ 72 (206)
|+|++|||||||+++|+++.... .+.+|.+.... .+.+++ .+.+.+|||||++.+ ...+..+++.+|++
T Consensus 8 lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~v 84 (307)
T 3r7w_A 8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVL 84 (307)
T ss_dssp EECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEE
T ss_pred EECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEE
Confidence 58999999999999999874322 23444444333 334434 688999999999988 67888999999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCc--CCC----CCHHHHHHHHHHcC---CeEEEeccC
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHA--DKNIIIMLVGNKSDLET--LRA----VPTEDAKEFAEKEG---LCFMETSAL 141 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~ 141 (206)
|+|||++++++++.+..|...+.... ..++|+++++||+|+.. .+. +..+++..++..+| ++++++||+
T Consensus 85 i~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~ 164 (307)
T 3r7w_A 85 IHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW 164 (307)
T ss_dssp EEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTT
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeec
Confidence 99999999999998877755544322 35799999999999864 233 44577888888887 789999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 040835 142 ESTNVELAFLTVLTEIY 158 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~i~ 158 (206)
+ .++.++|..+++.+.
T Consensus 165 ~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 165 D-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp S-SHHHHHHHHHHHTTC
T ss_pred C-ChHHHHHHHHHHHHc
Confidence 9 889999999887653
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=2.4e-26 Score=163.59 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=113.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++|||||||+++|++..+...+.++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|++|+|+|+++
T Consensus 13 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (178)
T 2lkc_A 13 IMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD 90 (178)
T ss_dssp EESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC
T ss_pred EECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 589999999999999999988777666655555555555655 457899999999999989899999999999999988
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-------C--CeEEEeccCCCCCHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-------G--LCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~v~~~~~ 151 (206)
+...... .++..+. ..++|+++|+||+|+... ..++........ + ++++++||+++.|++++|+
T Consensus 91 ~~~~~~~-~~l~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 91 GVMPQTV-EAINHAK---AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp CCCHHHH-HHHHHHG---GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred CCcHHHH-HHHHHHH---hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 4221111 1222222 246899999999998642 233333333322 2 4799999999999999999
Q ss_pred HHHHHHHHHh
Q 040835 152 TVLTEIYRIV 161 (206)
Q Consensus 152 ~l~~~i~~~~ 161 (206)
++.+.+...+
T Consensus 164 ~l~~~~~~~~ 173 (178)
T 2lkc_A 164 MILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHhhhhhc
Confidence 9998776543
No 107
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=2e-26 Score=165.66 Aligned_cols=154 Identities=20% Similarity=0.206 Sum_probs=112.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC-----------chhhhhhhHhHhcC-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG-----------QERYRAVTSAYYRG- 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~- 68 (206)
|+|++|||||||+++|++..+...+.++.+. ........ .+.+||||| ++.+...+..+++.
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR--KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp EEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT--SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCcCCccCCCCCccc--eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999887666665433 33333333 689999999 67777777778776
Q ss_pred CcEEEEEeeCCChhhHHHH-HHHHHH---------HHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe----
Q 040835 69 AVGAMLVYDITKRQSFDNV-ARWLEE---------LRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC---- 134 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---- 134 (206)
++++++++++.+..++..+ ..|... +......++|+++|+||+|+...+ .++...++..++++
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 156 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEI 156 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhhhhcc
Confidence 6666666666666666655 455432 122223579999999999986533 56678888888864
Q ss_pred ---EEEeccCCCCCHHHHHHHHHHHHHHHhhh
Q 040835 135 ---FMETSALESTNVELAFLTVLTEIYRIVSK 163 (206)
Q Consensus 135 ---~~~~Sa~~~~~v~~~~~~l~~~i~~~~~~ 163 (206)
++++||+++.|++++|+++.+.+.+...+
T Consensus 157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 157 DKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp HHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999988766544
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.3e-27 Score=179.93 Aligned_cols=156 Identities=30% Similarity=0.418 Sum_probs=113.0
Q ss_pred CccCC---------CCCHHHHHHHHhc---CCCCCCCcccc-ceeeEEEE--------------EEECCeEEEEEEEe--
Q 040835 1 LIGDS---------AVGKSQLLARFAR---DEFSLDSKATI-GVEFQTKT--------------LVIHHKNVKAQIWD-- 51 (206)
Q Consensus 1 v~G~~---------~~GKTtLl~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~i~D-- 51 (206)
|+|.+ |||||||+++|++ ..+...+.+++ +.++.... ..+++..+.+.|||
T Consensus 24 lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~ 103 (255)
T 3c5h_A 24 VVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQT 103 (255)
T ss_dssp EEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEEC
T ss_pred EECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcc
Confidence 57888 9999999999999 55655555543 22221111 12345678899999
Q ss_pred ---------------------CCCchhhhhhhHhHhc---------------------CCcEEEEEeeCCCh--hhHHHH
Q 040835 52 ---------------------TAGQERYRAVTSAYYR---------------------GAVGAMLVYDITKR--QSFDNV 87 (206)
Q Consensus 52 ---------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~ 87 (206)
++|++.|..++..+++ ++|++|+|||++++ .+++.+
T Consensus 104 ~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~ 183 (255)
T 3c5h_A 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ 183 (255)
T ss_dssp CCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHH
Confidence 5566666666666766 79999999999998 899999
Q ss_pred HHHHHHHHhc-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 88 ARWLEELRGH-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-EGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 88 ~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
..|+..+... ...++|+++|+||+|+...+.+ ++...++.. .+++++++||+++.|++++|.+|.+.+.
T Consensus 184 ~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 184 LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999888654 2357999999999998643333 566777766 4889999999999999999999988763
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.7e-27 Score=182.79 Aligned_cols=152 Identities=19% Similarity=0.342 Sum_probs=113.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+... .+|.+.... . +....+.+.||||||++.+..++..+++.+|++|+|||+++
T Consensus 170 ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 170 MVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp EEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--E--EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC
T ss_pred EECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--E--EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc
Confidence 589999999999999998886433 345444332 2 33345789999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH-----cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK-----EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.++..+..|+..+.... ..++|+++|+||+|+.... ..+++...... .+++++++||+++.||+++|++|+
T Consensus 245 ~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~ 322 (329)
T 3o47_A 245 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 322 (329)
T ss_dssp SSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence 999998888776664432 3579999999999996522 23333332221 245799999999999999999999
Q ss_pred HHHHH
Q 040835 155 TEIYR 159 (206)
Q Consensus 155 ~~i~~ 159 (206)
+.+.+
T Consensus 323 ~~l~~ 327 (329)
T 3o47_A 323 NQLRN 327 (329)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 87753
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=4.6e-25 Score=180.65 Aligned_cols=153 Identities=23% Similarity=0.390 Sum_probs=120.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|.+|||||||+++|++..+. ...+|.+.+... +....+.+.+|||+|++.+...+..+++.+|++|+|||+++
T Consensus 327 lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~ 401 (497)
T 3lvq_E 327 MLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 401 (497)
T ss_dssp EECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTC
T ss_pred EEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcc
Confidence 5899999999999999998864 345565554433 33456889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCCCCCHHHHHHHHH-----HcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLRAVPTEDAKEFAE-----KEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
++++..+..|+..+.... ..++|+++|+||+|+.. .....++..... ..+++++++||++++||+++|++|.
T Consensus 402 ~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 479 (497)
T 3lvq_E 402 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLT 479 (497)
T ss_dssp GGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS--CCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc--CCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHH
Confidence 999999998888775543 25799999999999964 223333333221 1234699999999999999999999
Q ss_pred HHHHHH
Q 040835 155 TEIYRI 160 (206)
Q Consensus 155 ~~i~~~ 160 (206)
+.+.+.
T Consensus 480 ~~~~~~ 485 (497)
T 3lvq_E 480 SNYKSK 485 (497)
T ss_dssp HHCC--
T ss_pred HHHHhc
Confidence 876444
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=1e-25 Score=162.67 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=102.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------chhhhhhhHhHhcCC-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG----------QERYRAVTSAYYRGA- 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~- 69 (206)
|+|.+|||||||+++|++..+.....++.+.+........+. .+.+||||| .+.+...+..+++.+
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTRE 104 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhh
Confidence 589999999999999999876555555555555544444433 589999999 777888888888777
Q ss_pred --cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--HHHHH-HHHHcCCeEEEeccCCCC
Q 040835 70 --VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT--EDAKE-FAEKEGLCFMETSALEST 144 (206)
Q Consensus 70 --d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~ 144 (206)
|++++|+|++++.++.... ++..+.. .+.|+++|+||+|+...+.+.. +++.+ +....+++++++||+++.
T Consensus 105 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (195)
T 1svi_A 105 ELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK 180 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred cCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCC
Confidence 9999999999876665432 2222222 4689999999999975433321 22222 222236789999999999
Q ss_pred CHHHHHHHHHHHH
Q 040835 145 NVELAFLTVLTEI 157 (206)
Q Consensus 145 ~v~~~~~~l~~~i 157 (206)
|++++|+++.+.+
T Consensus 181 gv~~l~~~l~~~l 193 (195)
T 1svi_A 181 GKDEAWGAIKKMI 193 (195)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=1.3e-25 Score=161.24 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=114.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhHhc--CCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR------AVTSAYYR--GAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~ 72 (206)
|+|++|||||||+++|++..+.....++.+.......+..+ +..+.+|||||++.+. .++..++. .+|++
T Consensus 12 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T 2wjg_A 12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLV 89 (188)
T ss_dssp EECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEE
Confidence 58999999999999999876554444544444444445444 4779999999987764 34556664 59999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
++|+|.++ ++....|+..+.. .+.|+++++||+|+...+.+. .+...++..++++++++||+++.|++++|++
T Consensus 90 i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (188)
T 2wjg_A 90 VNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKA 162 (188)
T ss_dssp EEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred EEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHH
Confidence 99999986 4455667666654 468999999999986544433 3567788888999999999999999999999
Q ss_pred HHHHHHHH
Q 040835 153 VLTEIYRI 160 (206)
Q Consensus 153 l~~~i~~~ 160 (206)
+.+.+...
T Consensus 163 i~~~~~~~ 170 (188)
T 2wjg_A 163 ISIAVKDK 170 (188)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 99877543
No 113
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=2.8e-25 Score=171.37 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=117.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe-EEEEEEEeCCCchh----------hhhhhHhHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK-NVKAQIWDTAGQER----------YRAVTSAYYRGA 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~----------~~~~~~~~~~~~ 69 (206)
|+|.+|||||||+|+|++..+......+ +++........... ...+.+|||||... +......+++.+
T Consensus 15 ivG~~nvGKSTLin~l~g~~~~i~s~~~-~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~a 93 (308)
T 3iev_A 15 IVGKPNVGKSTLLNNLLGTKVSIISPKA-GTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEA 93 (308)
T ss_dssp EECSTTSSHHHHHHHHHTSCCSCCCSSS-CCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCcHHHHHHHHhCCCccccCCCC-CceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcC
Confidence 5899999999999999998876443222 22222222222223 57899999999743 335667788999
Q ss_pred cEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCHH
Q 040835 70 VGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG--LCFMETSALESTNVE 147 (206)
Q Consensus 70 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~ 147 (206)
|++++|+|++++.+......|+..+.. .+.|+++|+||+|+.............+...++ .+++++||+++.|++
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~ 170 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLD 170 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHH
T ss_pred CEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHH
Confidence 999999999998877777777777665 368999999999997434555667777877775 789999999999999
Q ss_pred HHHHHHHHHH
Q 040835 148 LAFLTVLTEI 157 (206)
Q Consensus 148 ~~~~~l~~~i 157 (206)
++|+++.+.+
T Consensus 171 ~L~~~l~~~l 180 (308)
T 3iev_A 171 ELVKTILKYL 180 (308)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999998776
No 114
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=4.5e-25 Score=154.42 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=101.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchh-------hhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER-------YRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~~ 72 (206)
|+|++|+|||||+++|.+..+.. ...++.+.......+..++ ..+.+|||||... +...+..+++.+|++
T Consensus 6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVV 83 (161)
T ss_dssp EECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEE
Confidence 58999999999999999887542 2233333344444444444 4789999999876 455567788999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 151 (206)
|+|+|++++.+... ..+...+.. .+.|+++|+||+|+... .++..+++ ..++ +++++||+++.|++++|+
T Consensus 84 i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 84 LFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp EEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred EEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence 99999998543321 112222222 36899999999999653 23334455 5677 799999999999999999
Q ss_pred HHHHHH
Q 040835 152 TVLTEI 157 (206)
Q Consensus 152 ~l~~~i 157 (206)
++.+.+
T Consensus 155 ~l~~~l 160 (161)
T 2dyk_A 155 AIWERL 160 (161)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998754
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=9.7e-26 Score=160.06 Aligned_cols=147 Identities=21% Similarity=0.231 Sum_probs=106.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh------h--hHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA------V--TSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~--~~~~~~~~d~ 71 (206)
|+|++|||||||+++|.+..... ...++.+.......+.+++ ..+.+|||||++.+.. . ...+++.+|+
T Consensus 9 ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~ 86 (172)
T 2gj8_A 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIEQADR 86 (172)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSE
T ss_pred EECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCE
Confidence 58999999999999999876432 2233334444455556655 4589999999864211 1 1246789999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.++. ...|+..+......++|+++|+||+|+..... .++...+.+++++||+++.|++++|.
T Consensus 87 ~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 87 VLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp EEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHH
Confidence 99999999987765 34676666655545799999999999853211 11122467899999999999999999
Q ss_pred HHHHHH
Q 040835 152 TVLTEI 157 (206)
Q Consensus 152 ~l~~~i 157 (206)
++.+.+
T Consensus 159 ~l~~~~ 164 (172)
T 2gj8_A 159 HLKQSM 164 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998765
No 116
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3e-25 Score=168.03 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=112.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh------hhhHhHhc--CCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR------AVTSAYYR--GAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~ 72 (206)
++|++|||||||+|+|++........+ +.++......+.. ...+.+|||||+..+. .+.+.++. .+|++
T Consensus 8 lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~v 84 (272)
T 3b1v_A 8 LIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSI 84 (272)
T ss_dssp EECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEE
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEE
Confidence 589999999999999999765444434 3444445555555 6789999999987764 45566665 69999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|+++.+.. ..|...+.. .++|+++++||+|+...+.+. .+...++..++++++++||+++.|++++|.+
T Consensus 85 i~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 157 (272)
T 3b1v_A 85 LNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKK 157 (272)
T ss_dssp EEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHH
T ss_pred EEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHH
Confidence 999999986543 345555544 479999999999986434433 3567788888999999999999999999999
Q ss_pred HHHHH
Q 040835 153 VLTEI 157 (206)
Q Consensus 153 l~~~i 157 (206)
+.+.+
T Consensus 158 i~~~~ 162 (272)
T 3b1v_A 158 AAHTT 162 (272)
T ss_dssp HHHSC
T ss_pred HHHHH
Confidence 98654
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=9.9e-25 Score=164.25 Aligned_cols=149 Identities=18% Similarity=0.146 Sum_probs=112.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhHh--cCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA------VTSAYY--RGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~ 72 (206)
|+|.+|||||||+++|++..+.....+. .+.......+......+.+|||||...+.. +...++ ..+|++
T Consensus 10 lvG~~nvGKTsL~n~l~g~~~~~~~~pg--~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~i 87 (258)
T 3a1s_A 10 LAGCPNVGKTSLFNALTGTKQYVANWPG--VTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLV 87 (258)
T ss_dssp EECCTTSSHHHHHHHHHTTCEEEEECTT--SCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEE
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCC--ceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEE
Confidence 5899999999999999997765444443 344444444433457899999999876654 335555 589999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|+++.++. ..|...+.. .++|+++++||+|+...+.+. .+...++..++++++++||+++.|++++|++
T Consensus 88 i~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 88 ILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp EEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHH
T ss_pred EEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHH
Confidence 999999986543 235555544 369999999999986544443 2467888889999999999999999999999
Q ss_pred HHHHHH
Q 040835 153 VLTEIY 158 (206)
Q Consensus 153 l~~~i~ 158 (206)
+.+.+.
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987653
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=9.3e-26 Score=186.11 Aligned_cols=156 Identities=23% Similarity=0.279 Sum_probs=117.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEE------EEE--CCeEEEEEEEeCCCchhhhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKT------LVI--HHKNVKAQIWDTAGQERYRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+++|++..+.....++.+.++.... +.+ ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 46 lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~i 125 (535)
T 3dpu_A 46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY 125 (535)
T ss_dssp EESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEE
Confidence 5899999999999999999988778888777666432 111 23468899999999999999999999999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|+++. +.+..|+..+.... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|..
T Consensus 126 i~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~ 201 (535)
T 3dpu_A 126 MLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKS 201 (535)
T ss_dssp EEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHH
T ss_pred EEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHH
Confidence 999999875 44567877777665 46999999999999877778888889998889999999999999999999999
Q ss_pred HHHHHHHH
Q 040835 153 VLTEIYRI 160 (206)
Q Consensus 153 l~~~i~~~ 160 (206)
+.+.+.+.
T Consensus 202 l~~~~~~~ 209 (535)
T 3dpu_A 202 LKSAVLHP 209 (535)
T ss_dssp HHHHHTCT
T ss_pred HHHHHhcc
Confidence 99877553
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.9e-25 Score=166.96 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=109.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh----------hhHhHh--cC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA----------VTSAYY--RG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~ 68 (206)
|+|.+|||||||+|+|++........++.+.......+..++ ..+.+|||||...+.. +...++ ..
T Consensus 6 lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~ 83 (256)
T 3iby_A 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLE 83 (256)
T ss_dssp EEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCC
Confidence 589999999999999999876555555544444444555544 4789999999866543 456677 89
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
+|++|+|+|+++.+....+. ..+.. .+.|+++++||+|+...+... .....+....+++++++||+++.|+++
T Consensus 84 ~d~vi~VvDas~~~~~~~l~---~~l~~---~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 84 YDCIINVIDACHLERHLYLT---SQLFE---LGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPA 156 (256)
T ss_dssp CSEEEEEEEGGGHHHHHHHH---HHHTT---SCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHH
T ss_pred CCEEEEEeeCCCchhHHHHH---HHHHH---cCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 99999999999865544333 23333 479999999999986433322 224567778899999999999999999
Q ss_pred HHHHHHHH
Q 040835 149 AFLTVLTE 156 (206)
Q Consensus 149 ~~~~l~~~ 156 (206)
+|.++.+.
T Consensus 157 l~~~i~~~ 164 (256)
T 3iby_A 157 LQQSLLHC 164 (256)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99999764
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=4.9e-24 Score=153.62 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=106.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC----------chhhhhhhHhHhcCC-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG----------QERYRAVTSAYYRGA- 69 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~- 69 (206)
|+|.+|||||||+++|++.... ...++.+.+........+ ..+.+||||| .+.+...+..+++.+
T Consensus 28 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (195)
T 3pqc_A 28 FVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRW 103 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCc
Confidence 5899999999999999998743 333444544444333333 3578999999 667777777777766
Q ss_pred --cEEEEEeeCCChhhH--HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHc-CCeEEEeccCC
Q 040835 70 --VGAMLVYDITKRQSF--DNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEKE-GLCFMETSALE 142 (206)
Q Consensus 70 --d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~-~~~~~~~Sa~~ 142 (206)
|++++|+|+++..+. ..+..|+.. .+.|+++|+||+|+..... ...+++..++... +++++++||++
T Consensus 104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 177 (195)
T 3pqc_A 104 SLQMVFLLVDGRIPPQDSDLMMVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVT 177 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTT
T ss_pred CceEEEEEecCCCCCCHHHHHHHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 999999999875433 223334332 2689999999999864222 2234455566554 47899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 040835 143 STNVELAFLTVLTEIYR 159 (206)
Q Consensus 143 ~~~v~~~~~~l~~~i~~ 159 (206)
+.|++++|+++.+.+.+
T Consensus 178 ~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 178 GEGISELLDLISTLLKE 194 (195)
T ss_dssp CTTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 99999999999987743
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=4.1e-24 Score=157.46 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=105.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC-CeEEEEEEEeCCC----------chhhhhhhHhHhcC-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH-HKNVKAQIWDTAG----------QERYRAVTSAYYRG- 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G----------~~~~~~~~~~~~~~- 68 (206)
|+|.+|+|||||+++|++...........+.+......... .....+.+||||| .+.+......++..
T Consensus 34 v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (223)
T 4dhe_A 34 FAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTR 113 (223)
T ss_dssp EEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcC
Confidence 58999999999999999987322222222344444444444 4457799999999 35556666667665
Q ss_pred --CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHHHHHHHHH-------cCCeEEE
Q 040835 69 --AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP--TEDAKEFAEK-------EGLCFME 137 (206)
Q Consensus 69 --~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-------~~~~~~~ 137 (206)
+|++|+|+|+++..+. ....|+..+.. .++|+++|+||+|+....... .+++...... .+.++++
T Consensus 114 ~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 189 (223)
T 4dhe_A 114 PQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQL 189 (223)
T ss_dssp TTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred cCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEE
Confidence 7889999999875432 22334444444 468999999999986422211 1222222222 4568999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHH
Q 040835 138 TSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 138 ~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+||+++.|++++|.+|.+.+...
T Consensus 190 ~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 190 FSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp EBTTTTBSHHHHHHHHHHHHC--
T ss_pred eecCCCcCHHHHHHHHHHhcCcc
Confidence 99999999999999999887544
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.90 E-value=1e-23 Score=160.00 Aligned_cols=150 Identities=19% Similarity=0.131 Sum_probs=111.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh------hhHhHh--cCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA------VTSAYY--RGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~~ 72 (206)
|+|++|||||||+++|++..+.....++.+.......+...+ ..+.+|||||...+.. ....++ ..+|++
T Consensus 8 lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 85 (271)
T 3k53_A 8 LVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVI 85 (271)
T ss_dssp EEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEE
Confidence 589999999999999999877544555544444444444443 4589999999877655 455666 789999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|+++.+ ....|...+.... ..|+++++||+|+...+.... ....+.+.++++++++||+++.|++++|..
T Consensus 86 i~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~ 159 (271)
T 3k53_A 86 VDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRM 159 (271)
T ss_dssp EEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHH
T ss_pred EEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHH
Confidence 9999999863 2233333444321 389999999999754233222 267788888999999999999999999999
Q ss_pred HHHHHH
Q 040835 153 VLTEIY 158 (206)
Q Consensus 153 l~~~i~ 158 (206)
+.+.+.
T Consensus 160 i~~~~~ 165 (271)
T 3k53_A 160 IALMAE 165 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 987753
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.90 E-value=2.6e-24 Score=163.42 Aligned_cols=148 Identities=15% Similarity=0.156 Sum_probs=106.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh----------hhHhHh--cC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA----------VTSAYY--RG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~ 68 (206)
|+|.+|+|||||+|+|++..+.....++.+.......+. ..+..+.+|||||...+.. .+..++ ..
T Consensus 8 lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~ 85 (274)
T 3i8s_A 8 LIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGD 85 (274)
T ss_dssp EEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEE--CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEE--eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcC
Confidence 589999999999999999876444444433333333333 3346789999999876552 233333 79
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
+|++|+|+|+++.+....+. ..+... ++|+++|+||+|+...+... .....+...++++++++||+++.|+++
T Consensus 86 ~d~ii~VvD~~~~~~~~~~~---~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~e 158 (274)
T 3i8s_A 86 ADLLINVVDASNLERNLYLT---LQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEA 158 (274)
T ss_dssp CSEEEEEEEGGGHHHHHHHH---HHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHH
T ss_pred CCEEEEEecCCChHHHHHHH---HHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence 99999999999865543333 333332 69999999999986433321 235677788899999999999999999
Q ss_pred HHHHHHHHH
Q 040835 149 AFLTVLTEI 157 (206)
Q Consensus 149 ~~~~l~~~i 157 (206)
+|.++.+.+
T Consensus 159 l~~~i~~~~ 167 (274)
T 3i8s_A 159 LKLAIDRYK 167 (274)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHH
Confidence 999887654
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=2.8e-24 Score=157.86 Aligned_cols=136 Identities=19% Similarity=0.278 Sum_probs=100.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcC----CcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD---SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG----AVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~~i 73 (206)
|+|++|+|||||+++|.+..+... +.++.+. ......+.+|||||++.+...+..+++. +|++|
T Consensus 17 ~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp EECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 589999999999999999876542 3333222 1245678999999999998888888877 89999
Q ss_pred EEeeCC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCcCCCCC------HHHHHHHHHHcCCeEEEeccCC
Q 040835 74 LVYDIT-KRQSFDNVARWLEELRGH----ADKNIIIMLVGNKSDLETLRAVP------TEDAKEFAEKEGLCFMETSALE 142 (206)
Q Consensus 74 ~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~ 142 (206)
+|+|++ ++.++..+..|+..+... ...++|+++|+||+|+...+.+. .+++..++...+++++++|+++
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~ 167 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKI 167 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999 888888888887776543 33579999999999997655433 4456677777778899999998
Q ss_pred CCC
Q 040835 143 STN 145 (206)
Q Consensus 143 ~~~ 145 (206)
+.+
T Consensus 168 ~~~ 170 (218)
T 1nrj_B 168 NEE 170 (218)
T ss_dssp ---
T ss_pred ccc
Confidence 865
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=1.3e-23 Score=161.36 Aligned_cols=148 Identities=18% Similarity=0.165 Sum_probs=102.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCCchh--------hhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIWDTAGQER--------YRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~d~ 71 (206)
|+|.+|||||||+|+|++..+.... .+..+... ...........+.+|||||... +......+++.+|+
T Consensus 12 ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~--i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~ 89 (301)
T 1wf3_A 12 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKR--LRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNA 89 (301)
T ss_dssp EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC--EEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSE
T ss_pred EECCCCCCHHHHHHHHhCCceeeecCCCCceeEE--EEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCE
Confidence 5899999999999999998875432 22211121 1111223357899999999765 45566778999999
Q ss_pred EEEEeeCCChhhHHHHHHHH-HHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHHH
Q 040835 72 AMLVYDITKRQSFDNVARWL-EELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE--GLCFMETSALESTNVEL 148 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~ 148 (206)
+++|+|++++.+.. ..|+ ..+.... .++|+++|+||+|+..... +.......+ ..+++++||+++.|+++
T Consensus 90 il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~ 162 (301)
T 1wf3_A 90 VVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAE 162 (301)
T ss_dssp EEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred EEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHH
Confidence 99999998764433 3343 3444432 4699999999999864221 123333333 34799999999999999
Q ss_pred HHHHHHHHH
Q 040835 149 AFLTVLTEI 157 (206)
Q Consensus 149 ~~~~l~~~i 157 (206)
+|+.+.+.+
T Consensus 163 l~~~l~~~l 171 (301)
T 1wf3_A 163 LKADLLALM 171 (301)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999987654
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.5e-22 Score=159.12 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=112.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh---------hhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR---------AVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~d~ 71 (206)
|+|.+|||||||+++|.+........+..+.......+... ...+.+|||||...+. .....+...+|+
T Consensus 172 lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ 249 (357)
T 2e87_A 172 IAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNL 249 (357)
T ss_dssp EECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSE
T ss_pred EECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCE
Confidence 58999999999999999876432222222222222222222 4678999999974321 112244567999
Q ss_pred EEEEeeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 040835 72 AMLVYDITKRQ--SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELA 149 (206)
Q Consensus 72 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 149 (206)
+++|+|+++.. ++.....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||++|+|++++
T Consensus 250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l 326 (357)
T 2e87_A 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLV 326 (357)
T ss_dssp EEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHH
T ss_pred EEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHH
Confidence 99999998876 67777788888776543 799999999999864222 24456666777899999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040835 150 FLTVLTEIYRIV 161 (206)
Q Consensus 150 ~~~l~~~i~~~~ 161 (206)
|+++.+.+....
T Consensus 327 ~~~i~~~l~~~~ 338 (357)
T 2e87_A 327 KEEIIKTLRPLA 338 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886543
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=2.4e-23 Score=168.52 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=92.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhh--------HhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVT--------SAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~d~ 71 (206)
|+|.+|||||||+|+|++.... ....++.+.+.....+.+++ ..+.+|||||.+.+...+ ..+++.+|+
T Consensus 238 ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 315 (476)
T 3gee_A 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 315 (476)
T ss_dssp EECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSCSE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCE
Confidence 5899999999999999997643 22233323333334444444 679999999987765433 346789999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+|+|+|++++.++..+..+...+.... ++|+++|+||+|+...... ....+......+++++||+++.|++++|+
T Consensus 316 vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 316 ILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp EEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHH
Confidence 999999999877653333333333332 6999999999999653332 22334443246899999999999999999
Q ss_pred HHHHHHH
Q 040835 152 TVLTEIY 158 (206)
Q Consensus 152 ~l~~~i~ 158 (206)
++.+.+.
T Consensus 391 ~i~~~~~ 397 (476)
T 3gee_A 391 HMGDLVK 397 (476)
T ss_dssp HHTHHHH
T ss_pred HHHHHHh
Confidence 9988775
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=5.1e-23 Score=165.82 Aligned_cols=154 Identities=18% Similarity=0.165 Sum_probs=108.0
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCc----------hhhhhhhH-hHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ----------ERYRAVTS-AYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~~~~~ 68 (206)
|+|.+|||||||+|+|++.... ....++.+.+.....+..++ ..+.+|||||+ +.|..... .+++.
T Consensus 180 lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 257 (436)
T 2hjg_A 180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR 257 (436)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHh
Confidence 5899999999999999998763 22223323333333444444 45899999997 55554443 47889
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH-HHHH----cCCeEEEeccCCC
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKE-FAEK----EGLCFMETSALES 143 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~ 143 (206)
+|++|+|+|++++.+.... .|+..+.. .++|+++++||+|+...+....++... +... .+++++++||++|
T Consensus 258 ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg 333 (436)
T 2hjg_A 258 SEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTK 333 (436)
T ss_dssp CSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred CCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccC
Confidence 9999999999998776654 46655554 469999999999997655544333332 2222 3679999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 040835 144 TNVELAFLTVLTEIYRI 160 (206)
Q Consensus 144 ~~v~~~~~~l~~~i~~~ 160 (206)
.|++++|..+.+.+.+.
T Consensus 334 ~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 334 KRIHTLMPAIIKASENH 350 (436)
T ss_dssp TTGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999877654
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=9.1e-23 Score=165.22 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=111.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCC----------chhhhhhhH-hHhcC
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG----------QERYRAVTS-AYYRG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~-~~~~~ 68 (206)
++|.+|+|||||+++|++.... ....++.+.+.....+..++ ..+.+||||| ++.|...+. .+++.
T Consensus 200 ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 277 (456)
T 4dcu_A 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR 277 (456)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhh
Confidence 5899999999999999976532 22233323333333444444 4789999999 566766555 47899
Q ss_pred CcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc-----CCeEEEeccCCC
Q 040835 69 AVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKE-----GLCFMETSALES 143 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~ 143 (206)
+|++|+|+|+++... +....|...+.. .++|+++|+||+|+...+....++..+.+... +++++++||+++
T Consensus 278 ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 353 (456)
T 4dcu_A 278 SEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTK 353 (456)
T ss_dssp CSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTC
T ss_pred CCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCC
Confidence 999999999987543 223345454544 46999999999999876666667777766655 579999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 040835 144 TNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 144 ~~v~~~~~~l~~~i~~~~ 161 (206)
.|++++|..+.+.+.+..
T Consensus 354 ~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 354 KRIHTLMPAIIKASENHS 371 (456)
T ss_dssp TTGGGHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 999999999998775543
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=6.4e-23 Score=159.67 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=112.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh----hhhhhHhHh---cCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER----YRAVTSAYY---RGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d~~i 73 (206)
|+|.+|||||||+++|++........+..+.......+.++. ...+.+|||||... +..+...++ ..+|++|
T Consensus 163 lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll 241 (342)
T 1lnz_A 163 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIV 241 (342)
T ss_dssp EESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEE
T ss_pred eeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEE
Confidence 589999999999999998754322222112222222333332 25789999999643 333444454 4599999
Q ss_pred EEeeCCC---hhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCH
Q 040835 74 LVYDITK---RQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG--LCFMETSALESTNV 146 (206)
Q Consensus 74 ~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v 146 (206)
+|+|+++ +.++..+..|+..+..+.. ..+|+++|+||+|+.. ..+....+...+. .+++++||++++|+
T Consensus 242 ~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~----~~e~~~~l~~~l~~~~~v~~iSA~tg~gi 317 (342)
T 1lnz_A 242 HVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE----AAENLEAFKEKLTDDYPVFPISAVTREGL 317 (342)
T ss_dssp EEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT----HHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred EEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC----CHHHHHHHHHHhhcCCCEEEEECCCCcCH
Confidence 9999998 7788888889888877642 4799999999999864 2245566777766 68999999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
++++.+|.+.+.+
T Consensus 318 ~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 318 RELLFEVANQLEN 330 (342)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987743
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=3.8e-22 Score=160.86 Aligned_cols=147 Identities=19% Similarity=0.251 Sum_probs=98.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchh---------hhhhhHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER---------YRAVTSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~d 70 (206)
|+|.+|||||||+|+|++..... ...+.++.+.....+..++ ..+.+|||||.+. +...+..+++.+|
T Consensus 6 ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad 83 (439)
T 1mky_A 6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREAD 83 (439)
T ss_dssp EECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCS
T ss_pred EECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHHHhCC
Confidence 58999999999999999887532 2333333334444444444 4689999999653 3455677899999
Q ss_pred EEEEEeeCCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH-HHHHHHcCC-eEEEeccCCCCCH
Q 040835 71 GAMLVYDITKRQSFDN--VARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA-KEFAEKEGL-CFMETSALESTNV 146 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~v 146 (206)
++|+|+|++++.+... +..|+. . .++|+++|+||+|+... . ..+. .++. ..++ +++++||++|.|+
T Consensus 84 ~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv 153 (439)
T 1mky_A 84 LVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINL 153 (439)
T ss_dssp EEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence 9999999987644322 233332 2 26899999999998531 0 1222 3333 4566 7899999999999
Q ss_pred HHHHHHHHHHHHH
Q 040835 147 ELAFLTVLTEIYR 159 (206)
Q Consensus 147 ~~~~~~l~~~i~~ 159 (206)
+++|+++.+.+.+
T Consensus 154 ~~L~~~i~~~l~~ 166 (439)
T 1mky_A 154 DTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 9999999988764
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=6.9e-23 Score=163.40 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=107.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh-------hHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV-------TSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ 72 (206)
|+|..|+|||||+++|++..+.. ...+..+.......+..... ..+.+|||||++.+... ...++..+|++
T Consensus 39 IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~v 117 (423)
T 3qq5_A 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCG 117 (423)
T ss_dssp EECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEE
T ss_pred EECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEE
Confidence 58999999999999999987642 22333333444444454433 37899999998776543 45688999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLT 152 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 152 (206)
|+|+|++.. .....|+..+... ++|+++|+||+|+...+.. +....+...++++++++||+++.|++++|++
T Consensus 118 llVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~ 189 (423)
T 3qq5_A 118 ILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKT 189 (423)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHH
T ss_pred EEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 999999433 3345566666553 6999999999999764443 5566677777899999999999999999999
Q ss_pred HHHHHHHH
Q 040835 153 VLTEIYRI 160 (206)
Q Consensus 153 l~~~i~~~ 160 (206)
+.+.+.+.
T Consensus 190 L~~~l~~~ 197 (423)
T 3qq5_A 190 ISEILPGD 197 (423)
T ss_dssp HHHHSCCC
T ss_pred HHHhhhhh
Confidence 99877433
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=2.5e-22 Score=162.72 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=107.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCch-hhhh--------hhHhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE-RYRA--------VTSAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~~~~~d 70 (206)
|+|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||.+ .+.. ....+++.+|
T Consensus 248 ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD 325 (482)
T 1xzp_A 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKAD 325 (482)
T ss_dssp EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCS
T ss_pred EECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhccc
Confidence 5899999999999999997643 22233334444444555554 568999999987 5432 2456789999
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAF 150 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 150 (206)
++|+|+|++++.++.... ++..+ .++|+++|+||+|+... ...+++..+.. .+.+++++||+++.|++++|
T Consensus 326 ~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 326 IVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp EEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHH
T ss_pred EEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHH
Confidence 999999999887665433 22322 36899999999999642 34455544432 44689999999999999999
Q ss_pred HHHHHHHHH
Q 040835 151 LTVLTEIYR 159 (206)
Q Consensus 151 ~~l~~~i~~ 159 (206)
.+|.+.+..
T Consensus 397 ~~l~~~~~~ 405 (482)
T 1xzp_A 397 ESIYRETQE 405 (482)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHhh
Confidence 999998764
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.5e-22 Score=163.08 Aligned_cols=148 Identities=18% Similarity=0.169 Sum_probs=97.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch--------hhhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE--------RYRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++..+... ..+.+.+...........+..+.+|||||++ .+...+..+++.+|++
T Consensus 8 ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~i 86 (436)
T 2hjg_A 8 IVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVI 86 (436)
T ss_dssp EECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEE
T ss_pred EECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence 589999999999999999776432 2334556555555566667789999999985 5667778889999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 151 (206)
|+|+|+.++.+... .++..+.. ..++|+++++||+|+..... +..++. ..++ +++++||++|.|++++++
T Consensus 87 l~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 87 IFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp EEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHH
T ss_pred EEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHH
Confidence 99999988765433 23333222 25789999999999864221 111222 3455 789999999999999999
Q ss_pred HHHHHHH
Q 040835 152 TVLTEIY 158 (206)
Q Consensus 152 ~l~~~i~ 158 (206)
++.+.+.
T Consensus 158 ~i~~~l~ 164 (436)
T 2hjg_A 158 AVAEHFK 164 (436)
T ss_dssp HHHHTGG
T ss_pred HHHHhcC
Confidence 9987764
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=5.5e-22 Score=152.44 Aligned_cols=151 Identities=18% Similarity=0.135 Sum_probs=99.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch-h--------hhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE-R--------YRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~~~~~~d~ 71 (206)
|+|++|||||||+|+|++..+....... +.+.......+......+.+|||||.. . +......+++.+|+
T Consensus 13 IvG~~nvGKSTLln~L~g~~~~i~s~~~-~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~ 91 (301)
T 1ega_A 13 IVGRPNVGKSTLLNKLLGQKISITSRKA-QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVEL 91 (301)
T ss_dssp EECSSSSSHHHHHHHHHTCSEEECCCCS-SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEE
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCC-CcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCE
Confidence 5899999999999999998764322111 112111111122334678999999986 2 23334566789999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAF 150 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~ 150 (206)
+++|+|+++ - .....|+..... ..+.|+++++||+|+...+....+.+..+...++. .++++||+++.|+++++
T Consensus 92 vl~Vvd~~~-~--~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 92 VIFVVEGTR-W--TPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166 (301)
T ss_dssp EEEEEETTC-C--CHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred EEEEEeCCC-C--CHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHH
Confidence 999999976 2 222233322222 24689999999999864112122334555555665 69999999999999999
Q ss_pred HHHHHHH
Q 040835 151 LTVLTEI 157 (206)
Q Consensus 151 ~~l~~~i 157 (206)
+.+...+
T Consensus 167 ~~i~~~l 173 (301)
T 1ega_A 167 AIVRKHL 173 (301)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 9988654
No 136
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.3e-20 Score=148.02 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=104.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc---------hhhhhhhHhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ---------ERYRAVTSAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~~~~~d~ 71 (206)
|+|.+|||||||+|+|++..+.....+..+.+.....+.+++ ..+.+|||+|. +.|... ...+..+|+
T Consensus 184 lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~aD~ 260 (364)
T 2qtf_A 184 IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKYSDA 260 (364)
T ss_dssp EECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGGSSE
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHhCCE
Confidence 589999999999999999876433333323334445566665 56799999996 223333 335788999
Q ss_pred EEEEeeCCChh--hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHHHHc---CCeEEEeccCCCCC
Q 040835 72 AMLVYDITKRQ--SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV-PTEDAKEFAEKE---GLCFMETSALESTN 145 (206)
Q Consensus 72 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~ 145 (206)
+++|+|++++. ....+..|...+......+.|+++|+||+|+...... ....+..++..+ +.+++++||+++.|
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~g 340 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTN 340 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBS
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcC
Confidence 99999999876 4555555655555544357899999999998642210 011233334544 23689999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 040835 146 VELAFLTVLTEIYRI 160 (206)
Q Consensus 146 v~~~~~~l~~~i~~~ 160 (206)
++++++++.+.+...
T Consensus 341 i~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 341 LELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998876554
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.85 E-value=3.3e-20 Score=148.04 Aligned_cols=154 Identities=17% Similarity=0.111 Sum_probs=106.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEE-------EEE------------ECCeEEEEEEEeCCCchhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTK-------TLV------------IHHKNVKAQIWDTAGQERYRAV 61 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~~~~i~D~~G~~~~~~~ 61 (206)
++|.+|+|||||+++|++.......... ..+.... ... .......+.+|||||++.|...
T Consensus 13 vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~ 91 (403)
T 3sjy_A 13 VVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMAT 91 (403)
T ss_dssp EECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHH
T ss_pred EECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHH
Confidence 5899999999999999985443211100 0000000 000 0112378999999999999999
Q ss_pred hHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHHc---CCeEE
Q 040835 62 TSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAEKE---GLCFM 136 (206)
Q Consensus 62 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~---~~~~~ 136 (206)
....+..+|++|+|+|+++..++.....|+..+.... ..|+++++||+|+...... ..+++.++.... +++++
T Consensus 92 ~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii 169 (403)
T 3sjy_A 92 MLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPII 169 (403)
T ss_dssp HHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEE
T ss_pred HHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEE
Confidence 9999999999999999998766666677766665543 2589999999998642211 112222333222 56899
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 040835 137 ETSALESTNVELAFLTVLTEI 157 (206)
Q Consensus 137 ~~Sa~~~~~v~~~~~~l~~~i 157 (206)
++||+++.|+++++++|.+.+
T Consensus 170 ~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 170 PVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp ECBTTTTBSHHHHHHHHHHHS
T ss_pred EEECCCCcChHHHHHHHHHhC
Confidence 999999999999999988755
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=141.13 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=98.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccc--cceeeEEEEEEECCeEEEEEEEeCCCc-----------hhhhhhhHhHhc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKAT--IGVEFQTKTLVIHHKNVKAQIWDTAGQ-----------ERYRAVTSAYYR 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~~~~~~~~ 67 (206)
|+|.+|||||||+|+|++..+.....++ .+..........+ ...+.+|||||. +.+...+..+++
T Consensus 34 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 111 (239)
T 3lxx_A 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSP 111 (239)
T ss_dssp EECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999998886655542 2333333334443 357899999993 344555556677
Q ss_pred CCcEEEEEeeCCChhh--HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC------HHHHHHHHHHcCCeEEEec
Q 040835 68 GAVGAMLVYDITKRQS--FDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP------TEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~~S 139 (206)
.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.+..+...++..++.++
T Consensus 112 ~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~ 189 (239)
T 3lxx_A 112 GPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALN 189 (239)
T ss_dssp CCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECC
T ss_pred CCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEE
Confidence 8999999999875332 22222232222221 246999999999986533332 2457788888888888887
Q ss_pred cCCC-----CCHHHHHHHHHHHHH
Q 040835 140 ALES-----TNVELAFLTVLTEIY 158 (206)
Q Consensus 140 a~~~-----~~v~~~~~~l~~~i~ 158 (206)
...+ .++.++|..+.+.+.
T Consensus 190 ~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 190 NKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHHH
Confidence 6644 567777776666553
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=2.1e-20 Score=149.36 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=96.8
Q ss_pred CccCCCCCHHHHHHHHhcCC---CCCCCcc--ccceeeEEEEEEE-------------C--C----eEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDE---FSLDSKA--TIGVEFQTKTLVI-------------H--H----KNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i~D~~G~~ 56 (206)
++|+.++|||||+++|++.. +..+..+ |+...+....+.. + + ....+.+|||||++
T Consensus 13 iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~ 92 (408)
T 1s0u_A 13 MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE 92 (408)
T ss_dssp EESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH
T ss_pred EEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH
Confidence 58999999999999999643 2233333 3222222222211 1 1 13789999999999
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCCh----hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHH
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKR----QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEK 130 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~ 130 (206)
.|.......+..+|++|+|+|++++ .+.+.+.. +.... ..|+++++||+|+..... ...+++.+++..
T Consensus 93 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~ 166 (408)
T 1s0u_A 93 TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG 166 (408)
T ss_dssp HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 9988777778889999999999954 34433332 22221 257999999999965433 234556666665
Q ss_pred c---CCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 131 E---GLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 131 ~---~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
+ +++++++||+++.|+++++++|.+.+.
T Consensus 167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 167 TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3 578999999999999999999886543
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.85 E-value=9.6e-21 Score=156.81 Aligned_cols=152 Identities=20% Similarity=0.255 Sum_probs=105.0
Q ss_pred CccCCCCCHHHHHHHHhcCC--CCC-----CC------ccccceeeEEEEEEE-----CCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDE--FSL-----DS------KATIGVEFQTKTLVI-----HHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
|+|+.++|||||+++|+... +.. .. ....+.++......+ ++..+.+.||||||+..|...+
T Consensus 9 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev 88 (599)
T 3cb4_D 9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEV 88 (599)
T ss_dssp EECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHH
Confidence 58999999999999998632 110 00 111233443333333 3446889999999999999999
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCe---EEEec
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLC---FMETS 139 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~S 139 (206)
..+++.+|++|+|+|++++........|..... .++|+++++||+|+...+ ..+...++...+++. ++++|
T Consensus 89 ~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vS 162 (599)
T 3cb4_D 89 SRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCS 162 (599)
T ss_dssp HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEEC
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEee
Confidence 999999999999999998776666666665543 368999999999996422 233345666666764 89999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 040835 140 ALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 140 a~~~~~v~~~~~~l~~~i~ 158 (206)
|+++.|++++|+++.+.+.
T Consensus 163 Aktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 163 AKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTTCTTHHHHHHHHHHHSC
T ss_pred cccCCCchhHHHHHhhcCC
Confidence 9999999999999987654
No 141
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=1.2e-20 Score=153.36 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=103.1
Q ss_pred CccCCCCCHHHHHHHHhcCC-------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDE-------FSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 73 (206)
++|..++|||||+++|++.. ...+..+.++.......+..+ ...+.+|||||++.|.......+..+|++|
T Consensus 24 iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~~~~~aD~~i 101 (482)
T 1wb1_A 24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVSAADIIDLAL 101 (482)
T ss_dssp EEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHHHTTSCCEEE
T ss_pred EECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHHHHhhCCEEE
Confidence 58999999999999999876 222222222222222223333 367999999999999888889999999999
Q ss_pred EEeeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHc----CCeEEEeccCCCC
Q 040835 74 LVYDITK---RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEKE----GLCFMETSALEST 144 (206)
Q Consensus 74 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~Sa~~~~ 144 (206)
+|+|+++ +.+.+.+. .+.. .++|+++++||+|+..... ...+++..++... +++++++||++++
T Consensus 102 lVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~ 174 (482)
T 1wb1_A 102 IVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGF 174 (482)
T ss_dssp EEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCT
T ss_pred EEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCC
Confidence 9999987 33333322 2222 3588899999999864211 1123455555555 5789999999999
Q ss_pred CHHHHHHHHHHHHH
Q 040835 145 NVELAFLTVLTEIY 158 (206)
Q Consensus 145 ~v~~~~~~l~~~i~ 158 (206)
|+++++++|.+.+.
T Consensus 175 gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 175 GVDELKNLIITTLN 188 (482)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhc
Confidence 99999999988775
No 142
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.84 E-value=2.4e-20 Score=154.19 Aligned_cols=152 Identities=22% Similarity=0.277 Sum_probs=106.5
Q ss_pred CccCCCCCHHHHHHHHhcCC--CCC-----CCc------cccceeeEEE--EEEE---CCeEEEEEEEeCCCchhhhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDE--FSL-----DSK------ATIGVEFQTK--TLVI---HHKNVKAQIWDTAGQERYRAVT 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~~~-----~~~------~~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~~~~~~~ 62 (206)
|+|+.++|||||+++|+... +.. ... ...+.++... .+.+ ++..+.+.+|||||+..|...+
T Consensus 11 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev 90 (600)
T 2ywe_A 11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEV 90 (600)
T ss_dssp EECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHH
T ss_pred EECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHH
Confidence 58999999999999998631 110 000 0112222211 1111 3446889999999999999888
Q ss_pred HhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC---eEEEec
Q 040835 63 SAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL---CFMETS 139 (206)
Q Consensus 63 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~S 139 (206)
...++.+|++|+|+|++++........|..... .++|+++++||+|+.... ......++...+++ .++++|
T Consensus 91 ~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vS 164 (600)
T 2ywe_A 91 SRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILAS 164 (600)
T ss_dssp HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECB
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEE
Confidence 999999999999999999877776666765443 468999999999986422 22334555666676 489999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 040835 140 ALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 140 a~~~~~v~~~~~~l~~~i~ 158 (206)
|+++.|++++|+++++.+.
T Consensus 165 Aktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 165 AKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp TTTTBSHHHHHHHHHHHSC
T ss_pred eecCCCchHHHHHHHHhcc
Confidence 9999999999999987664
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=5.2e-21 Score=144.23 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=99.8
Q ss_pred CccCCCCCHHHHHHHHhcCCC-CCCCccc-cceeeEEEEEEECCeEEEEEEEeCCCchhhh-----------hhhHhHhc
Q 040835 1 LIGDSAVGKSQLLARFARDEF-SLDSKAT-IGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-----------AVTSAYYR 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~~~~~~~~ 67 (206)
|+|.+|||||||+++|++... .....++ .+..........+ +..+.||||||...+. .....+++
T Consensus 27 lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 104 (260)
T 2xtp_A 27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAP 104 (260)
T ss_dssp EEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 589999999999999998773 3333332 2333333333333 4678999999976542 22234678
Q ss_pred CCcEEEEEeeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEe-CCCCCcCCCCCH-------HHHHHHHHHcCCe---E
Q 040835 68 GAVGAMLVYDITKRQSF-DNVARWLEELRGHADKNIIIMLVGN-KSDLETLRAVPT-------EDAKEFAEKEGLC---F 135 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~~~~---~ 135 (206)
.+|++|+|+|+++.... ..+..++..+.... ...|.++++| |+|+.. ..+.. .++..+...++.. +
T Consensus 105 ~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 182 (260)
T 2xtp_A 105 GPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNG-GSLMDYMHDSDNKALSKLVAACGGRICAF 182 (260)
T ss_dssp CCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTT-CCHHHHHHHCCCHHHHHHHHHTTTCEEEC
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCC-ccHHHHHHhcchHHHHHHHHHhCCeEEEe
Confidence 99999999999862221 22233333332211 2456666666 999964 22211 2244466666543 2
Q ss_pred --EEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 136 --METSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 136 --~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
+++||+++.|++++|.++.+.+...
T Consensus 183 ~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 183 NNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCcccccccHHHHHHHHHHHHHHHHhC
Confidence 7899999999999999999887653
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=2e-21 Score=156.80 Aligned_cols=147 Identities=18% Similarity=0.211 Sum_probs=94.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhh--------HhHhcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVT--------SAYYRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~d~ 71 (206)
|+|.+|||||||+|+|++..+.. ...++.+.+.....+.+++ ..+.+|||||...+.... ..++..+|+
T Consensus 229 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 306 (462)
T 3geh_A 229 IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADL 306 (462)
T ss_dssp EEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCCCSCSE
T ss_pred EEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCE
Confidence 58999999999999999875532 2223333333333445554 568999999986654332 335788999
Q ss_pred EEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 72 AMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|+|++++.+... ..|+..+. ..|+++|+||+|+....... ....+. .+.+++++||+++.|+++++.
T Consensus 307 vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 307 VLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp EEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHH
T ss_pred EEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHH
Confidence 999999998765443 34444442 37999999999986533322 111111 356899999999999999999
Q ss_pred HHHHHHHH
Q 040835 152 TVLTEIYR 159 (206)
Q Consensus 152 ~l~~~i~~ 159 (206)
++.+.+..
T Consensus 377 ~i~~~~~~ 384 (462)
T 3geh_A 377 AILEIVQT 384 (462)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99887643
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=1.4e-20 Score=140.75 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=98.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCc--------hhhhhhhHhHh----cC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQ--------ERYRAVTSAYY----RG 68 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~----~~ 68 (206)
|+|.+|||||||+|+|++........++.+.+..............+.+|||||. +.+......++ +.
T Consensus 26 lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (247)
T 3lxw_A 26 LVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPG 105 (247)
T ss_dssp EESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTC
T ss_pred EECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 5899999999999999998876554443333333322223233567899999996 33333333333 89
Q ss_pred CcEEEEEeeCCChhhH-HHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC------CHHHHHHHHHHcCCeEEEeccC
Q 040835 69 AVGAMLVYDITKRQSF-DNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV------PTEDAKEFAEKEGLCFMETSAL 141 (206)
Q Consensus 69 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~ 141 (206)
+|++|+|+|+++.... ..+..++..+......+.|+++++||+|+...... ....+..+...++..++.++..
T Consensus 106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~ 185 (247)
T 3lxw_A 106 PHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNR 185 (247)
T ss_dssp CSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCC
Confidence 9999999999853211 12223333332211136899999999998642110 1134677778888877777655
Q ss_pred C-----CCCHHHHHHHHHHHHHHH
Q 040835 142 E-----STNVELAFLTVLTEIYRI 160 (206)
Q Consensus 142 ~-----~~~v~~~~~~l~~~i~~~ 160 (206)
. +.++++++..+.+.+.+.
T Consensus 186 ~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 186 ATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccccHHHHHHHHHHHHHHHHHc
Confidence 4 478888888887776653
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.84 E-value=2.2e-21 Score=147.41 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=85.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC--------ccccceeeEEEEEEECCeEEEEEEEeCCCch-------hhhhhh---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS--------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQE-------RYRAVT--- 62 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~--- 62 (206)
|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||.. .+..+.
T Consensus 13 vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i 92 (274)
T 3t5d_A 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI 92 (274)
T ss_dssp EEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHH
Confidence 5899999999999998887654433 3444444444444434455789999999962 233222
Q ss_pred ----HhHhc-------------CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC--HHH
Q 040835 63 ----SAYYR-------------GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP--TED 123 (206)
Q Consensus 63 ----~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~ 123 (206)
..++. .+|+++++++.+..........++..+.. ++|+++|+||+|+....+.. .+.
T Consensus 93 ~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~ 168 (274)
T 3t5d_A 93 DSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQ 168 (274)
T ss_dssp HHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHH
Confidence 33333 37899999987753222222334444433 69999999999985322211 123
Q ss_pred HHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 124 AKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 124 ~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+.+.....+++++.+|+.+++|+++++.++.+.
T Consensus 169 i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 169 IMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 445556678999999999999999988877654
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.84 E-value=7.8e-21 Score=154.86 Aligned_cols=147 Identities=16% Similarity=0.116 Sum_probs=95.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------------------------ccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------------------------KATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|.+++|||||+++|+........ ....+.++......+......+.|||
T Consensus 38 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiD 117 (483)
T 3p26_A 38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVD 117 (483)
T ss_dssp EESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEE
Confidence 5899999999999999865111000 01113344334444555667899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHH------HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH--
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFD------NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED-- 123 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-- 123 (206)
|||++.|......++..+|++|+|+|++++.... .....+..+... ...|+++++||+|+...+....++
T Consensus 118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~ 195 (483)
T 3p26_A 118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIK 195 (483)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHHH
Confidence 9999999999999999999999999999864321 122222222222 125699999999986533333333
Q ss_pred --HHHHHHHc-----CCeEEEeccCCCCCHHHH
Q 040835 124 --AKEFAEKE-----GLCFMETSALESTNVELA 149 (206)
Q Consensus 124 --~~~~~~~~-----~~~~~~~Sa~~~~~v~~~ 149 (206)
+..+.... +++++++||++++|++++
T Consensus 196 ~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 196 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 33333333 357999999999999863
No 148
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=2.5e-20 Score=149.03 Aligned_cols=152 Identities=21% Similarity=0.196 Sum_probs=101.5
Q ss_pred CccCCCCCHHHHHHHHhcCC---CCCCCcc--ccceeeEEEEEEE-------------C--C----eEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDE---FSLDSKA--TIGVEFQTKTLVI-------------H--H----KNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i~D~~G~~ 56 (206)
++|+.++|||||+++|++.. +..+..+ |+...+....... + + ....+.+|||||++
T Consensus 15 iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~ 94 (410)
T 1kk1_A 15 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE 94 (410)
T ss_dssp EECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH
T ss_pred EECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH
Confidence 58999999999999999643 2222223 2222222222211 0 1 13789999999999
Q ss_pred hhhhhhHhHhcCCcEEEEEeeCCCh----hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHH
Q 040835 57 RYRAVTSAYYRGAVGAMLVYDITKR----QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEK 130 (206)
Q Consensus 57 ~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~ 130 (206)
.|.......+..+|++|+|+|+++. .+.+.+.. +.... ..|+++++||+|+..... ...+++..++..
T Consensus 95 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 95 ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEFIEG 168 (410)
T ss_dssp HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 9887777778889999999999864 33333332 22221 257999999999864221 122334455443
Q ss_pred ---cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 131 ---EGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 131 ---~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
.+++++++||+++.|+++++++|.+.+.
T Consensus 169 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 169 TVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999999886543
No 149
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=1.8e-20 Score=150.90 Aligned_cols=148 Identities=20% Similarity=0.180 Sum_probs=99.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------------------------ccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------------------------KATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|.+++|||||+++|+...-.... ....+.++......+......+.|||
T Consensus 22 iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiD 101 (439)
T 3j2k_7 22 FIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILD 101 (439)
T ss_pred EEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEE
Confidence 5899999999999999654211110 01123444444444555567899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhh---HH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCC------
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQS---FD---NVARWLEELRGHADKNII-IMLVGNKSDLETLRA------ 118 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~------ 118 (206)
|||++.|.......+..+|++|+|+|+++... +. ...+.+..+.. .++| +++++||+|+.....
T Consensus 102 TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~~~~~~~~~ 178 (439)
T 3j2k_7 102 APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTVNWSNERYE 178 (439)
T ss_pred CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcccchHHHHHH
Confidence 99999999999999999999999999988532 11 12222222222 3566 999999999853111
Q ss_pred CCHHHHHHHHHHcC------CeEEEeccCCCCCHHHHHH
Q 040835 119 VPTEDAKEFAEKEG------LCFMETSALESTNVELAFL 151 (206)
Q Consensus 119 ~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~ 151 (206)
...+++..++...+ ++++++||++|.|+++++.
T Consensus 179 ~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 179 ECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11233445555554 4699999999999999765
No 150
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=8.9e-21 Score=149.31 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=104.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|.+++|||||+++|+. . +.+.......+......+.+|||||+++|.......++.+|++|+|+| ++
T Consensus 26 iiG~~d~GKSTL~~~L~~------~----giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~ 94 (370)
T 2elf_A 26 IIGTEKSGRTSLAANLGK------K----GTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ 94 (370)
T ss_dssp EEESTTSSHHHHHHTTSE------E----EEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT
T ss_pred EECCCCCCHHHHHHHHHh------C----CEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC
Confidence 589999999999999981 1 222222233344556679999999999998888888899999999999 54
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcE-EEEEe-CCCCCcCCCCCH--HHHHHHHHHcC---CeEEE--eccCC---CCCHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIII-MLVGN-KSDLETLRAVPT--EDAKEFAEKEG---LCFME--TSALE---STNVEL 148 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~v~~ 148 (206)
.......+++..+.. .++|. ++++| |+|+ ....... +++..++..++ +++++ +||++ +.|+++
T Consensus 95 -g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~ 169 (370)
T 2elf_A 95 -GLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDE 169 (370)
T ss_dssp -CCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHH
T ss_pred -CCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHH
Confidence 334445555555544 35676 88999 9998 4222111 34555554443 68999 99999 999999
Q ss_pred HHHHHHHHHHHH
Q 040835 149 AFLTVLTEIYRI 160 (206)
Q Consensus 149 ~~~~l~~~i~~~ 160 (206)
+++.|.+.+...
T Consensus 170 L~~~l~~~~~~~ 181 (370)
T 2elf_A 170 LKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhcccc
Confidence 999999887654
No 151
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.83 E-value=9.7e-22 Score=154.52 Aligned_cols=159 Identities=15% Similarity=0.215 Sum_probs=86.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-CCc--------cccceeeEEEEEEECCeEEEEEEEeCCCc-------hhhhhhhH-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-DSK--------ATIGVEFQTKTLVIHHKNVKAQIWDTAGQ-------ERYRAVTS- 63 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~- 63 (206)
|+|++|+|||||+++|++..... .+. ++.+.......+..++..+.+.+|||||. +.+..++.
T Consensus 42 vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~ 121 (361)
T 2qag_A 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY 121 (361)
T ss_dssp ECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHH
T ss_pred EEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHH
Confidence 58999999999999987754322 221 33333333333333455678999999998 55655554
Q ss_pred ------hHhcCC-------------cEEEEEeeCCChhhHHHHH-HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--
Q 040835 64 ------AYYRGA-------------VGAMLVYDITKRQSFDNVA-RWLEELRGHADKNIIIMLVGNKSDLETLRAVPT-- 121 (206)
Q Consensus 64 ------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 121 (206)
.+++.+ ++++|+++.+ ..++..+. .|+..+ ..++|+++|+||+|+...+.+..
T Consensus 122 i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k 196 (361)
T 2qag_A 122 IDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLK 196 (361)
T ss_dssp HHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHH
Confidence 555433 3455555542 23343333 343333 25799999999999865333332
Q ss_pred HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHhhhhh
Q 040835 122 EDAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVSKKA 165 (206)
Q Consensus 122 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~~~~ 165 (206)
+++..++..++++++++||+++.+ ++.|.++.+.+.+..+...
T Consensus 197 ~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v 239 (361)
T 2qag_A 197 KRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV 239 (361)
T ss_dssp HHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred HHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence 456666667789999999999999 8999999998887665543
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=1.3e-20 Score=154.38 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=77.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC---------------CCc-----cccceeeEEEEEEECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL---------------DSK-----ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 60 (206)
|+|.+|+|||||+++|+...-.. ..+ ...+.++......+.+....+.||||||+..|..
T Consensus 18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~ 97 (528)
T 3tr5_A 18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTE 97 (528)
T ss_dssp EEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCH
T ss_pred EECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHH
Confidence 58999999999999997211100 000 0012222222333334467899999999999999
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
.+..+++.+|++|+|+|+++.........|. .+.. .++|+++++||+|+..
T Consensus 98 ~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 98 DTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence 9999999999999999999876655555443 2332 4689999999999853
No 153
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=4.9e-20 Score=148.56 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=99.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhh------------hHhHhc
Q 040835 1 LIGDSAVGKSQLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAV------------TSAYYR 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------~~~~~~ 67 (206)
|+|++|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||+|...+... ...++.
T Consensus 185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~ 262 (439)
T 1mky_A 185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE 262 (439)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHh
Confidence 5899999999999999987652 112222222222334555554 5789999997433221 134678
Q ss_pred CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHH-HHHH----cCCeEEEeccCC
Q 040835 68 GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKE-FAEK----EGLCFMETSALE 142 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~~Sa~~ 142 (206)
.+|++++++|+++..+.... .+...+.. .++|+++++||+|+...+....++... +... .+++++++||++
T Consensus 263 ~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 338 (439)
T 1mky_A 263 KADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADK 338 (439)
T ss_dssp HCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTT
T ss_pred hCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCC
Confidence 89999999999876554432 22232332 468999999999986544333433332 2222 357899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040835 143 STNVELAFLTVLTEIYRI 160 (206)
Q Consensus 143 ~~~v~~~~~~l~~~i~~~ 160 (206)
|.|++++|..+.+.+...
T Consensus 339 g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 339 GWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999998766543
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=5e-21 Score=155.07 Aligned_cols=148 Identities=18% Similarity=0.151 Sum_probs=98.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCC--------chhhhhhhHhHhcCCcEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAG--------QERYRAVTSAYYRGAVGA 72 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~~~d~~ 72 (206)
|+|.+|||||||+|+|++..+.... .+.+.+.........+....+.+||||| ++.+...+..+++.+|++
T Consensus 28 lvG~~nvGKSTL~n~l~~~~~~~v~-~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~i 106 (456)
T 4dcu_A 28 IVGRPNVGKSTIFNRIAGERISIVE-DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVI 106 (456)
T ss_dssp EECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEE
T ss_pred EECCCCCcHHHHHHHHhCCCCcccC-CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEE
Confidence 5899999999999999998765332 3346666666666677778899999999 677888888999999999
Q ss_pred EEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCC-eEEEeccCCCCCHHHHHH
Q 040835 73 MLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGL-CFMETSALESTNVELAFL 151 (206)
Q Consensus 73 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 151 (206)
|+|+|..+..+. ...|+..+.. ..++|+++|+||+|+.... ....++. ..+. .++++||.++.|+.++++
T Consensus 107 l~VvD~~~~~~~--~d~~l~~~l~--~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 107 IFMVNGREGVTA--ADEEVAKILY--RTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp EEEEESSSCSCH--HHHHHHHHHT--TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHH
T ss_pred EEEEeCCCCCCh--HHHHHHHHHH--HcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHH
Confidence 999998764332 2233333222 2579999999999985321 1111111 2233 478999999999999999
Q ss_pred HHHHHHH
Q 040835 152 TVLTEIY 158 (206)
Q Consensus 152 ~l~~~i~ 158 (206)
.+.+.+.
T Consensus 178 ~i~~~l~ 184 (456)
T 4dcu_A 178 AVAEHFK 184 (456)
T ss_dssp HHHTTGG
T ss_pred HHHhhcc
Confidence 9987653
No 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=1.3e-19 Score=150.08 Aligned_cols=154 Identities=17% Similarity=0.170 Sum_probs=101.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEEC----------------CeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIH----------------HKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|++++|||||+++|++..+.......+..+......... .....+.+|||||++.|..++..
T Consensus 10 IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r 89 (594)
T 1g7s_A 10 VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR 89 (594)
T ss_dssp EECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred EECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHH
Confidence 58999999999999999865533221111111111111110 11125899999999999998888
Q ss_pred HhcCCcEEEEEeeCCC---hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCC-------------H---H---
Q 040835 65 YYRGAVGAMLVYDITK---RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVP-------------T---E--- 122 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~---~--- 122 (206)
.++.+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+....... . +
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHH
Confidence 8999999999999998 555544432 222 468999999999986421100 0 0
Q ss_pred ----HHHHHHHHcC---------------CeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 040835 123 ----DAKEFAEKEG---------------LCFMETSALESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 123 ----~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~ 161 (206)
+........+ ++++.+||+++.|++++++++...+....
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 1111112222 37999999999999999999998776443
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.81 E-value=3.6e-22 Score=163.15 Aligned_cols=152 Identities=16% Similarity=0.176 Sum_probs=106.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
|+|++++|||||+++|.+..+.....++++.++....+..+ ....+.+|||||++.|..++..++..+|++|+|+|+++
T Consensus 9 IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 9 IMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD 87 (537)
T ss_dssp EEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS
T ss_pred EECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC
Confidence 58999999999999999876655544444443333333221 23468999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC-CCHHHHHHH---HHHc--CCeEEEeccCCCCCHHHHHHHHH
Q 040835 81 RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA-VPTEDAKEF---AEKE--GLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 81 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
.........| ..+. ..++|+++++||+|+..... ....+...+ +..+ .++++++||+++.|++++|+++.
T Consensus 88 g~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~ 163 (537)
T 3izy_P 88 GVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATI 163 (537)
T ss_dssp CCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred CccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence 6543333222 2222 34689999999999853221 111222211 1122 24799999999999999999998
Q ss_pred HHH
Q 040835 155 TEI 157 (206)
Q Consensus 155 ~~i 157 (206)
..+
T Consensus 164 ~l~ 166 (537)
T 3izy_P 164 ALA 166 (537)
T ss_dssp HHH
T ss_pred Hhh
Confidence 665
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.8e-20 Score=133.88 Aligned_cols=108 Identities=22% Similarity=0.327 Sum_probs=81.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC---CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcC----CcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD---SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRG----AVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~d~~i 73 (206)
|+|++|||||||+++|.+..+... ..++.+ .+.....+.+|||||++.+...+..++.. +|++|
T Consensus 53 vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp EECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred EECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 589999999999999999876441 122211 12245678999999999887777777765 89999
Q ss_pred EEeeCC-ChhhHHHHHHHHHHHHhc----CCCCCcEEEEEeCCCCCcCC
Q 040835 74 LVYDIT-KRQSFDNVARWLEELRGH----ADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 74 ~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~ 117 (206)
+|+|++ +.+++..+..|+..+... ...+.|+++|+||+|+...+
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 999999 888998888887776543 23579999999999997533
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.81 E-value=1.6e-20 Score=150.01 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=99.6
Q ss_pred CccCCCCCHHHHHHHHhcC--------CCCCCC-------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhH
Q 040835 1 LIGDSAVGKSQLLARFARD--------EFSLDS-------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAY 65 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 65 (206)
++|.+++|||||+++|++. .+.... ....+.++......+......+.+|||||++.|......+
T Consensus 16 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~ 95 (405)
T 2c78_A 16 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG 95 (405)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHH
Confidence 5899999999999999973 111100 0122344444445555556789999999999998888899
Q ss_pred hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcC-----CeEE
Q 040835 66 YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV---PTEDAKEFAEKEG-----LCFM 136 (206)
Q Consensus 66 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~ 136 (206)
+..+|++|+|+|+++... .....|+..+.. .++| +++++||+|+...... ..+++..++..++ ++++
T Consensus 96 ~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 171 (405)
T 2c78_A 96 AAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVI 171 (405)
T ss_dssp HTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred HHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEE
Confidence 999999999999988643 333455554444 3578 8899999998641111 1234556666665 6899
Q ss_pred EeccCCCCC
Q 040835 137 ETSALESTN 145 (206)
Q Consensus 137 ~~Sa~~~~~ 145 (206)
++||+++.|
T Consensus 172 ~~SA~~g~~ 180 (405)
T 2c78_A 172 RGSALLALE 180 (405)
T ss_dssp ECCHHHHHH
T ss_pred EccHHHhhh
Confidence 999999987
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.81 E-value=4.2e-20 Score=147.14 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=104.0
Q ss_pred CccCCCCCHHHHHHHHhcCC-------CCCC-------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDE-------FSLD-------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|+.++|||||+++|++.. +... .....+.++......+......+.||||||++.|......++
T Consensus 8 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~ 87 (397)
T 1d2e_A 8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGT 87 (397)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTS
T ss_pred EEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhH
Confidence 58999999999999999741 1100 001223444444444555567899999999999988888889
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCC---CCHHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRA---VPTEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++|+|+|+++...... .+++..+.. .++| +++++||+|+..... ...+++.+++..++ +++++
T Consensus 88 ~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~ 163 (397)
T 1d2e_A 88 APLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIV 163 (397)
T ss_dssp SCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEE
T ss_pred hhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEE
Confidence 99999999999998543222 222233333 3678 689999999864111 11235566777665 58999
Q ss_pred eccCCCCC----------HHHHHHHHHHHH
Q 040835 138 TSALESTN----------VELAFLTVLTEI 157 (206)
Q Consensus 138 ~Sa~~~~~----------v~~~~~~l~~~i 157 (206)
+||+++.| +.++++.+.+.+
T Consensus 164 ~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 164 GSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp CCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred eehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 99999764 666766665543
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.81 E-value=5.1e-20 Score=148.25 Aligned_cols=148 Identities=23% Similarity=0.178 Sum_probs=99.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC------------Cccc-------------------cceeeEEEEEEECCeEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD------------SKAT-------------------IGVEFQTKTLVIHHKNVKAQI 49 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~------------~~~~-------------------~~~~~~~~~~~~~~~~~~~~i 49 (206)
++|..++|||||+++|++...... ...+ .+.++......+......+.+
T Consensus 29 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~i 108 (434)
T 1zun_B 29 TCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFII 108 (434)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEE
T ss_pred EEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEE
Confidence 589999999999999986531100 0011 122222222233445578999
Q ss_pred EeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC----CHHHHH
Q 040835 50 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV----PTEDAK 125 (206)
Q Consensus 50 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~ 125 (206)
|||||++.|......++..+|++|+|+|++++.. ....+++..+.... ..|+++++||+|+...... ..++..
T Consensus 109 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~i~~~~~ 185 (434)
T 1zun_B 109 ADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVFESIKADYL 185 (434)
T ss_dssp EECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence 9999999998888889999999999999998642 22334444333321 2369999999998642111 124456
Q ss_pred HHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 040835 126 EFAEKEG-----LCFMETSALESTNVELAFL 151 (206)
Q Consensus 126 ~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 151 (206)
.++..++ ++++++||+++.|+++++.
T Consensus 186 ~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 186 KFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 6666777 6799999999999998544
No 161
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.81 E-value=1.1e-19 Score=141.92 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=105.2
Q ss_pred ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC----------hhhHHHHHHHHHHHH
Q 040835 26 KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK----------RQSFDNVARWLEELR 95 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~ 95 (206)
.+|+|... ..+.++ .+.+.+||++|++.+...|..++++++++|+|+|+++ ..++.....|+..+.
T Consensus 178 ~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 178 VKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp CCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred CceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34555433 333333 5889999999999999999999999999999999999 456888888888776
Q ss_pred hcC-CCCCcEEEEEeCCCCCcCC---------------CCCHHHHHHHHH-----------HcCCeEEEeccCCCCCHHH
Q 040835 96 GHA-DKNIIIMLVGNKSDLETLR---------------AVPTEDAKEFAE-----------KEGLCFMETSALESTNVEL 148 (206)
Q Consensus 96 ~~~-~~~~p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~ 148 (206)
... ..++|+++++||+|+...+ .+..+++..++. ..++.+++|||+++.||++
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 542 2579999999999984211 356778888876 3567899999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 040835 149 AFLTVLTEIYRIVS 162 (206)
Q Consensus 149 ~~~~l~~~i~~~~~ 162 (206)
+|.++.+.+.+...
T Consensus 334 vF~~v~~~i~~~~l 347 (353)
T 1cip_A 334 VFDAVTDVIIKNNL 347 (353)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876543
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.80 E-value=3.2e-20 Score=149.38 Aligned_cols=150 Identities=20% Similarity=0.218 Sum_probs=98.5
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCCC----------------------c-----cccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLDS----------------------K-----ATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~~----------------------~-----~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|..++|||||+++|+.. .+.... + ...+.++......+......+.|||
T Consensus 11 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiD 90 (435)
T 1jny_A 11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIID 90 (435)
T ss_dssp EEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEE
Confidence 5899999999999999874 221110 0 0112333333334445567899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhc----CCCCC-cEEEEEeCCCCCcCC------CCC
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGH----ADKNI-IIMLVGNKSDLETLR------AVP 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~-p~ivv~nK~D~~~~~------~~~ 120 (206)
|||++.|......++..+|++|+|+|+++ .+++....|....... ...++ |+++++||+|+.... ...
T Consensus 91 tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~ 169 (435)
T 1jny_A 91 APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI 169 (435)
T ss_dssp CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHH
Confidence 99999999989999999999999999998 5565433222111111 11234 689999999986521 111
Q ss_pred HHHHHHHHHHcC-----CeEEEeccCCCCCHHHHHH
Q 040835 121 TEDAKEFAEKEG-----LCFMETSALESTNVELAFL 151 (206)
Q Consensus 121 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 151 (206)
.+++..++..++ ++++++||+++.|+.+++.
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 170 VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 345666777665 6799999999999986654
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.3e-20 Score=155.41 Aligned_cols=146 Identities=16% Similarity=0.155 Sum_probs=97.3
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc-----------------------------ccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA-----------------------------TIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|.+|+|||||+++|++......... ..|.++......+......+.|||
T Consensus 172 ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiD 251 (611)
T 3izq_1 172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVD 251 (611)
T ss_dssp EECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEE
Confidence 589999999999999997643222110 013333333333444567899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhh---H---HHHHHHHHHHHhcCCCC-CcEEEEEeCCCCCcCCCCC----
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQS---F---DNVARWLEELRGHADKN-IIIMLVGNKSDLETLRAVP---- 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~~~---- 120 (206)
|||++.|......++..+|++|+|+|++++.. + ......+..+.. .+ .|+++++||+|+...+...
T Consensus 252 TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~~~~~~~ei 328 (611)
T 3izq_1 252 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDWSQQRFEEI 328 (611)
T ss_dssp CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTTCHHHHHHH
T ss_pred CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccchhHHHHHHH
Confidence 99999999888999999999999999987521 1 111222222222 23 4599999999986422222
Q ss_pred HHHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 040835 121 TEDAKEFAEKEG-----LCFMETSALESTNVELA 149 (206)
Q Consensus 121 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 149 (206)
..++..++...+ ++++++||++|.|+.++
T Consensus 329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 329 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 223344444444 58999999999999876
No 164
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.78 E-value=3.1e-19 Score=137.56 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=110.6
Q ss_pred HHHhcCCCCCC-------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC-------
Q 040835 14 ARFARDEFSLD-------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT------- 79 (206)
Q Consensus 14 ~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~------- 79 (206)
.++....+.|. ..+|+|... ..+.+ ..+.+++||++|++.++..|..++++++++|+|+|++
T Consensus 133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi~~--~~~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~ 208 (327)
T 3ohm_A 133 DRVADPSYLPTQQDVLRVRVPTTGIIE--YPFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV 208 (327)
T ss_dssp HHHHSTTCCCCHHHHTTCCCCCCSEEE--EEEEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred HHHhccCCCccccchhcccCceeeEEE--EEEEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence 34555666665 556666433 23333 3588999999999999999999999999999999665
Q ss_pred ---ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCC----------------CCCHHHHHHHHH----------
Q 040835 80 ---KRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLR----------------AVPTEDAKEFAE---------- 129 (206)
Q Consensus 80 ---~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~---------- 129 (206)
+..++.....|+..+.... ..++|+++++||+|+...+ ..+.+++..++.
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 5667777777777765443 2579999999999985322 457777877743
Q ss_pred HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHh
Q 040835 130 KEGLCFMETSALESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 130 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~ 161 (206)
..++.+++|||+++.||+.+|..+.+.+++..
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999998764
No 165
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.78 E-value=1.1e-19 Score=139.54 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=74.0
Q ss_pred EEEEEEeCCCch-------------hhhhhhHhHhcCCcEEE-EEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 45 VKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAM-LVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 45 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
..+.+|||||.. .+......+++.++.+| +|+|+++..+......++..+. ..+.|+++|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence 578999999953 45566778888888776 6899987544333333444443 247899999999
Q ss_pred CCCCcCCCCCHHHHHHHHHH--cC-CeEEEeccCCCCCHHHHHHHHHHH
Q 040835 111 SDLETLRAVPTEDAKEFAEK--EG-LCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 111 ~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
+|+........+.+...... .+ .+++++||+++.|++++|.++.+.
T Consensus 202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 99965433222222211001 12 367899999999999999998874
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=2.1e-20 Score=151.56 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=84.3
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCC----------------------CCc-----cccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSL----------------------DSK-----ATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~----------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|+.++|||||+++|+.. .+.. ..+ ...+.++......+......+.|||
T Consensus 48 iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiD 127 (467)
T 1r5b_A 48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLD 127 (467)
T ss_dssp EEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEE
Confidence 5899999999999999752 1110 000 0012222222222333357899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChh---hHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCC------CCH
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQ---SFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRA------VPT 121 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~------~~~ 121 (206)
|||++.|.......+..+|++|+|+|+++.. +|+....|...+......++| +++++||+|+..... ...
T Consensus 128 tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~ 207 (467)
T 1r5b_A 128 APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECV 207 (467)
T ss_dssp CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHH
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHH
Confidence 9999999888888899999999999999863 222111222222211124677 999999999853111 112
Q ss_pred HHHHHHHHHc-------CCeEEEeccCCCCCHHHHH
Q 040835 122 EDAKEFAEKE-------GLCFMETSALESTNVELAF 150 (206)
Q Consensus 122 ~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~ 150 (206)
.++..++... +++++++||+++.|+.+++
T Consensus 208 ~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 208 DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 3456666665 3569999999999998866
No 167
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=1e-18 Score=127.28 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=92.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch----------hhhhhhHhHh---c
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE----------RYRAVTSAYY---R 67 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~---~ 67 (206)
|+|++|||||||+++|++..+.....++.+.+.....+.+++ .+.+|||||.. .+......++ .
T Consensus 31 lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (210)
T 1pui_A 31 FAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQ 107 (210)
T ss_dssp EEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhh
Confidence 589999999999999998774444445555554433333332 47899999973 2333333444 5
Q ss_pred CCcEEEEEeeCCChhhHHH--HHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC--CCHHHHHHHHHHcC--CeEEEeccC
Q 040835 68 GAVGAMLVYDITKRQSFDN--VARWLEELRGHADKNIIIMLVGNKSDLETLRA--VPTEDAKEFAEKEG--LCFMETSAL 141 (206)
Q Consensus 68 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~ 141 (206)
.++++++++|++++.+... +..|+ .. .+.|+++++||+|+....+ .....+..++...+ +.++++|++
T Consensus 108 ~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal 181 (210)
T 1pui_A 108 SLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL 181 (210)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred cccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec
Confidence 7899999999987654322 22332 22 4688999999999753111 11234445555443 568899999
Q ss_pred CCCCHHHHHHHHHHHH
Q 040835 142 ESTNVELAFLTVLTEI 157 (206)
Q Consensus 142 ~~~~v~~~~~~l~~~i 157 (206)
++.|++++++++.+.+
T Consensus 182 ~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 182 KKQGVDKLRQKLDTWF 197 (210)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988765
No 168
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=8e-19 Score=137.54 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=104.3
Q ss_pred HHHHhcCCCCCC-------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC-----
Q 040835 13 LARFARDEFSLD-------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK----- 80 (206)
Q Consensus 13 l~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----- 80 (206)
+.++....+.|. ..+|+|... ..+.++ .+.+.+|||+|++.+...|..++++++++|+|+|+++
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l 241 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVL 241 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEE
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccc
Confidence 455555555554 234555443 333443 5889999999999999999999999999999999999
Q ss_pred -----hhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcCC----------------CCCHHHHHHHHH---------
Q 040835 81 -----RQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETLR----------------AVPTEDAKEFAE--------- 129 (206)
Q Consensus 81 -----~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~--------- 129 (206)
..++.....|+..+.... ..++|+++++||+|+...+ ..+.+++..++.
T Consensus 242 ~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~ 321 (362)
T 1zcb_A 242 MEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRD 321 (362)
T ss_dssp TTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSS
T ss_pred cccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcc
Confidence 678888888888876542 3579999999999985311 256777777662
Q ss_pred --HcCCeEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 130 --KEGLCFMETSALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 130 --~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
..++.+++|||+++.||+++|.++.+.+++...
T Consensus 322 ~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 322 QQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp CC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999876654
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.77 E-value=6.4e-21 Score=154.60 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=99.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
++|+.++|||||+++|....+.....+.++.+..... +...+..+.+|||||++.|..++...+..+|++|+|+|+++
T Consensus 9 IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~--v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 9 IMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYH--VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD 86 (501)
T ss_dssp EEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCC--CCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT
T ss_pred EECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEE--EEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc
Confidence 5899999999999999986554433332222222222 22234578999999999999988889999999999999987
Q ss_pred h---hhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC--CCCCHH--HHHHHHHHcC--CeEEEeccCCCCCHHHHHH
Q 040835 81 R---QSFDNVARWLEELRGHADKNIIIMLVGNKSDLETL--RAVPTE--DAKEFAEKEG--LCFMETSALESTNVELAFL 151 (206)
Q Consensus 81 ~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~ 151 (206)
. .+.+.+ ..+.. .++|+++++||+|+... ..+..+ +...++..++ ++++++||+++.|++++|+
T Consensus 87 g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle 159 (501)
T 1zo1_I 87 GVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLD 159 (501)
T ss_dssp BSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHH
T ss_pred CccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhh
Confidence 4 333322 22222 46899999999998531 111100 0001112233 6899999999999999999
Q ss_pred HHHH
Q 040835 152 TVLT 155 (206)
Q Consensus 152 ~l~~ 155 (206)
++..
T Consensus 160 ~I~~ 163 (501)
T 1zo1_I 160 AILL 163 (501)
T ss_dssp HTTT
T ss_pred hhhh
Confidence 8864
No 170
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.77 E-value=5.3e-18 Score=133.97 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=99.5
Q ss_pred EEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCC----------hhhHHHHHHHHHHHHhcC-CCCCcEE
Q 040835 37 TLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK----------RQSFDNVARWLEELRGHA-DKNIIIM 105 (206)
Q Consensus 37 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~i 105 (206)
.+.++ .+.+.||||+|++.+...|..++++++++|+|||+++ ..++.....|+..+.... ..++|++
T Consensus 211 ~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 211 KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE
T ss_pred EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE
Confidence 34444 4889999999999999999999999999999999999 789999999998887653 3679999
Q ss_pred EEEeCCCCCcCCC---C---------------------------CHHHHHHHH-----HH--------cCCeEEEeccCC
Q 040835 106 LVGNKSDLETLRA---V---------------------------PTEDAKEFA-----EK--------EGLCFMETSALE 142 (206)
Q Consensus 106 vv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~ 142 (206)
||+||+|+...+. . ..+++..++ .. .++.+++|||++
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d 368 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVD 368 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTC
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeec
Confidence 9999999843211 1 134555553 21 245688999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhh
Q 040835 143 STNVELAFLTVLTEIYRIVSK 163 (206)
Q Consensus 143 ~~~v~~~~~~l~~~i~~~~~~ 163 (206)
+.||+++|.++.+.+++...+
T Consensus 369 ~~nV~~vF~~v~~~I~~~~l~ 389 (402)
T 1azs_C 369 TENIRRVFNDCRDIIQRMHLR 389 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776544
No 171
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.77 E-value=2.1e-18 Score=134.69 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=95.0
Q ss_pred eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC----------ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCC
Q 040835 43 KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT----------KRQSFDNVARWLEELRGHA-DKNIIIMLVGNKS 111 (206)
Q Consensus 43 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 111 (206)
..+.+.+|||+|++.+...|..++++++++|+|+|++ +..++.....|+..+.... ..++|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5789999999999999999999999999999999998 7788998888888876543 2579999999999
Q ss_pred CCCcCCC--C-------------------CHHHHHHHHHH----------------cCCeEEEeccCCCCCHHHHHHHHH
Q 040835 112 DLETLRA--V-------------------PTEDAKEFAEK----------------EGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 112 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
|+..++. + ..+++..++.. ..+.+++|||+++.||+++|.++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 13556666432 124578999999999999999999
Q ss_pred HHHHHHhhh
Q 040835 155 TEIYRIVSK 163 (206)
Q Consensus 155 ~~i~~~~~~ 163 (206)
+.+.+...+
T Consensus 341 ~~I~~~~l~ 349 (354)
T 2xtz_A 341 ETLRRRNLL 349 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998765443
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.77 E-value=4e-19 Score=154.14 Aligned_cols=152 Identities=16% Similarity=0.093 Sum_probs=100.7
Q ss_pred CccCCCCCHHHHHHHHhcCC-------CCC-------CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHh
Q 040835 1 LIGDSAVGKSQLLARFARDE-------FSL-------DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYY 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 66 (206)
++|++++|||||+++|++.. +.. ....+.|.++....+.++.....+.||||||++.|.......+
T Consensus 301 IIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~ga 380 (1289)
T 3avx_A 301 TIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGA 380 (1289)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTS
T ss_pred EEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHH
Confidence 58999999999999998741 000 0112234444333344555567899999999999988888899
Q ss_pred cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCC---CHHHHHHHHHHcC-----CeEEE
Q 040835 67 RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETLRAV---PTEDAKEFAEKEG-----LCFME 137 (206)
Q Consensus 67 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~~~~~ 137 (206)
..+|++|+|+|++++... ...+++..+.. .++| +++++||+|+...... ..+++..++..++ +++++
T Consensus 381 s~AD~aILVVDAtdGv~~-QTrEhL~ll~~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~Ip 456 (1289)
T 3avx_A 381 AQMDGAILVVAATDGPMP-QTREHILLGRQ---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVR 456 (1289)
T ss_dssp CCCSEEEEEEETTTCSCT-THHHHHHHHHH---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEE
T ss_pred hhCCEEEEEEcCCccCcH-HHHHHHHHHHH---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEE
Confidence 999999999999885422 23334444433 2578 7899999998642111 1245566777665 58999
Q ss_pred eccCCC--------CCHHHHHHHHHHH
Q 040835 138 TSALES--------TNVELAFLTVLTE 156 (206)
Q Consensus 138 ~Sa~~~--------~~v~~~~~~l~~~ 156 (206)
+||+++ .|+.++++.+.+.
T Consensus 457 vSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 457 GSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp CCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEeccCCCCCccccccchhhHhHHhhh
Confidence 999999 3466666666543
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.77 E-value=1.1e-19 Score=147.11 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=97.0
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCC------------------C----c-----cccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLD------------------S----K-----ATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
++|.+++|||||+++|++. .+... + + ...+.++......+......+.|||
T Consensus 12 iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiD 91 (458)
T 1f60_A 12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVID 91 (458)
T ss_dssp EEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEE
Confidence 5899999999999999864 11110 0 0 0012222222223444567899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChh---hHH---HHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCC----CC
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQ---SFD---NVARWLEELRGHADKNII-IMLVGNKSDLETLRA----VP 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~ 120 (206)
|||++.|......++..+|++|+|+|+++.. +|+ ...+++..+.. .++| +++++||+|+..... ..
T Consensus 92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~~~~~~~~i 168 (458)
T 1f60_A 92 APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWDESRFQEI 168 (458)
T ss_dssp CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTCHHHHHHH
T ss_pred CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccCCHHHHHHH
Confidence 9999999988889999999999999999763 121 22222222222 3465 899999999863111 11
Q ss_pred HHHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 040835 121 TEDAKEFAEKEG-----LCFMETSALESTNVELA 149 (206)
Q Consensus 121 ~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 149 (206)
.+++..++..++ ++++++||+++.|+.++
T Consensus 169 ~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 169 VKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 234556666665 68999999999999754
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.76 E-value=3.2e-18 Score=144.05 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=76.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc----------------ccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA----------------TIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|+.|+|||||+++|++......... ..+.++......+.+..+.+.+|||||+..|......
T Consensus 14 IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~ 93 (665)
T 2dy1_A 14 LVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRG 93 (665)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHH
T ss_pred EECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHH
Confidence 589999999999999995322111000 0122333333334444678999999999999988999
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
+++.+|++++|+|+++...... ..++..+.. .++|+++++||+|+.
T Consensus 94 ~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 94 ALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred HHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 9999999999999987543322 233333333 368999999999985
No 175
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.76 E-value=2e-18 Score=133.56 Aligned_cols=141 Identities=15% Similarity=0.218 Sum_probs=106.9
Q ss_pred HHhcCCCCCC-------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCC--------
Q 040835 15 RFARDEFSLD-------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT-------- 79 (206)
Q Consensus 15 ~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~-------- 79 (206)
++....+.+. ..+|+|..... +....+.+++||++|++.+...|..++++++++|+|+|++
T Consensus 128 Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~----~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e 203 (340)
T 4fid_A 128 RIAMEDYVPTEEDLIHNRTKTTGIHEYD----FVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYE 203 (340)
T ss_dssp HHSSTTCCCCHHHHHHSCCCCCSCEEEE----EESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC-
T ss_pred HHhcccCCccccceeecccceeeeEEEE----EEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccc
Confidence 3444555555 55666644332 3345688999999999999999999999999999999998
Q ss_pred --ChhhHHHHHHHHHHHHhcC-CCCCcEEEEEeCCCCCcC---------------CCCCHHHHHHHHHH-c---------
Q 040835 80 --KRQSFDNVARWLEELRGHA-DKNIIIMLVGNKSDLETL---------------RAVPTEDAKEFAEK-E--------- 131 (206)
Q Consensus 80 --~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~~~~~-~--------- 131 (206)
+..++.....|+..+.... ..++|+++++||+|+... .....+++..++.. .
T Consensus 204 ~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~ 283 (340)
T 4fid_A 204 DGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEM 283 (340)
T ss_dssp -CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEES
T ss_pred ccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhh
Confidence 6778888888877765543 367999999999998421 01245555554432 2
Q ss_pred -----------------CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 132 -----------------GLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 132 -----------------~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
.+.+++|||++..||+.+|..+.+.|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 284 NISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp CC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.76 E-value=4.4e-18 Score=135.39 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=105.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh----hhhhhH---hHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER----YRAVTS---AYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~~d~~i 73 (206)
|+|++|||||||+++|++........+..+.......+..+. ...+.+||+||... +..+.. ..+..++.++
T Consensus 162 LVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL 240 (416)
T 1udx_A 162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLL 240 (416)
T ss_dssp EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEE
T ss_pred EECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 589999999999999998643211111111222222333332 35689999999632 111222 2346799999
Q ss_pred EEeeCCChhhHHHHHHHHHHHHhcCC--CCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 040835 74 LVYDITKRQSFDNVARWLEELRGHAD--KNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFL 151 (206)
Q Consensus 74 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 151 (206)
+++|++ ...+..+..|...+..+.. ...|.++++||+|+... ...+++.......+++++.+||++++|++++++
T Consensus 241 ~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 241 YVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp EEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred EEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 999998 5556666666655544321 35889999999998642 223344455555678999999999999999999
Q ss_pred HHHHHHHHHh
Q 040835 152 TVLTEIYRIV 161 (206)
Q Consensus 152 ~l~~~i~~~~ 161 (206)
++.+.+.+..
T Consensus 318 ~i~~~l~~~~ 327 (416)
T 1udx_A 318 ALHALVRSTP 327 (416)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHhcc
Confidence 9998886543
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=9.6e-19 Score=137.69 Aligned_cols=110 Identities=11% Similarity=0.020 Sum_probs=77.8
Q ss_pred EEEEEEeCCCchhh-------------hhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 45 VKAQIWDTAGQERY-------------RAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 45 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
..+.+|||||...+ ......++..+|++|+++|..+..... ..|+..+......+.|+++|+||+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI 213 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence 35899999997665 566778899999999999876543221 234444455555678999999999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 112 DLETLRAVPTEDAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
|+........+....+....+.+++.+++.++.++++.+..+...
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 997544444444444444567889999999988888766554433
No 178
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=4.7e-19 Score=136.11 Aligned_cols=133 Identities=17% Similarity=0.124 Sum_probs=106.8
Q ss_pred HHHHHHhcCCCC-CCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChh-hHHHHH
Q 040835 11 QLLARFARDEFS-LDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQ-SFDNVA 88 (206)
Q Consensus 11 tLl~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 88 (206)
+|+.+++.+.|. ..+.||++..+. .. +.... .+.+||+ ++++..+++.+++++|++|+|+|++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 566777778887 788899885443 22 22222 6899999 8899999999999999999999999987 688889
Q ss_pred HHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHH
Q 040835 89 RWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEG--LCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 89 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
.|+..+.. .++|+++|+||+|+...+.+ ++...++..++ ++++++||+++.|++++|..+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99987765 47999999999999642222 44667777777 8999999999999999998765
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.74 E-value=1.4e-17 Score=140.69 Aligned_cols=113 Identities=13% Similarity=0.165 Sum_probs=79.8
Q ss_pred EEEEEeCCCchh---hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040835 46 KAQIWDTAGQER---YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE 122 (206)
Q Consensus 46 ~~~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 122 (206)
.+.||||||... ....+..+++.+|++|+|+|++++.+......|...+.. .+.|+++|+||+|+.....++.+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e 251 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD 251 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence 589999999765 344566788999999999999988776666656544432 36789999999998643211111
Q ss_pred ----------HHHH-----HHHH--------cCCeEEEeccC--------------CCCCHHHHHHHHHHHHHHHh
Q 040835 123 ----------DAKE-----FAEK--------EGLCFMETSAL--------------ESTNVELAFLTVLTEIYRIV 161 (206)
Q Consensus 123 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~v~~~~~~l~~~i~~~~ 161 (206)
.+.. +... ...++|++||+ ++.|+++++..+.+.+....
T Consensus 252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 1111 1111 12369999999 99999999999988776543
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.74 E-value=5.6e-18 Score=127.76 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=76.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-ccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHhHhc---------CCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSAYYR---------GAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---------~~d 70 (206)
|+|.+|+|||||+++|++....... .+..+.......+.. .+..+.+|||||+..+......+++ .+|
T Consensus 41 lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~ 118 (262)
T 3def_A 41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTID 118 (262)
T ss_dssp EEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEE--TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEE--CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCC
Confidence 5899999999999999998753222 222122223333333 3458999999998776554444332 789
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHhcCCC--CCcEEEEEeCCCCCcCCCCCH
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRGHADK--NIIIMLVGNKSDLETLRAVPT 121 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~ 121 (206)
++++|++++..........|+..+....+. ..|+++|+||+|+...+....
T Consensus 119 ~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 119 VLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp EEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 999999887644212224566666554332 248999999999864444443
No 181
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=2.1e-17 Score=135.59 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=73.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC--------------------CccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD--------------------SKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 60 (206)
|+|++|+|||||+++|+...-... .....+.++......+.+....+.||||||+..|..
T Consensus 18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~ 97 (529)
T 2h5e_A 18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSE 97 (529)
T ss_dssp EEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCH
T ss_pred EECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHH
Confidence 589999999999999996321110 001112222222233334457899999999999988
Q ss_pred hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 61 VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 61 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
....++..+|++|+|+|+++..... ...++..+. ..++|+++++||+|+..
T Consensus 98 ~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 98 DTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp HHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred HHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence 8888999999999999998764321 222222222 24789999999999853
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=9.5e-19 Score=134.35 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=82.3
Q ss_pred CccCCCCCHHHHHHHHhcC-CCCCCC--------ccccceeeEEEEEEECCeEEEEEEEeCCCc-------hhhhhhhH-
Q 040835 1 LIGDSAVGKSQLLARFARD-EFSLDS--------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQ-------ERYRAVTS- 63 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~- 63 (206)
|+|++|+|||||+++|++. .+.... .++.............+....+.+||++|. +.+.....
T Consensus 23 lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~ 102 (301)
T 2qnr_A 23 VVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY 102 (301)
T ss_dssp EEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH
Confidence 5899999999999998875 333222 112111111111122334567899999997 44444433
Q ss_pred ------hHhc-------------CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHH
Q 040835 64 ------AYYR-------------GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTE 122 (206)
Q Consensus 64 ------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 122 (206)
.++. .+++++++.+++.. +++.... ..+.... ..+++++|+||.|+...+++ ..+
T Consensus 103 l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~ 178 (301)
T 2qnr_A 103 IDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH-NKVNIVPVIAKADTLTLKERERLKK 178 (301)
T ss_dssp HHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT-TTSCEEEEECCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCCHHHHHHHHH
Confidence 3332 23456666665432 1222211 2222222 36799999999998643332 235
Q ss_pred HHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHHhh
Q 040835 123 DAKEFAEKEGLCFMETSALESTNVELAFLTVLTEIYRIVS 162 (206)
Q Consensus 123 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~~~ 162 (206)
++.+++..+++++|++||+++ |++++|..+.+.+.+..+
T Consensus 179 ~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 179 RILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 677888889999999999999 999999999988865443
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.72 E-value=1.6e-17 Score=140.28 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=76.3
Q ss_pred CccCCCCCHHHHHHHHhcCC--C------CCCC---c-----cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDE--F------SLDS---K-----ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~------~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|.+|+|||||+++|+... + .... + ...+.++......+.+....+.+|||||+..|...+..
T Consensus 17 IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 96 (691)
T 1dar_A 17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER 96 (691)
T ss_dssp EEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHH
Confidence 58999999999999998421 1 0000 0 00112222222223334578999999999999988999
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
+++.+|++|+|+|+++.........|.. +.. .++|+++++||+|+..
T Consensus 97 ~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 97 SMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred HHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999998777666555543 222 3799999999999853
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=3.3e-17 Score=126.59 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=69.1
Q ss_pred EEEEEEeCCCchh-------------hhhhhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 45 VKAQIWDTAGQER-------------YRAVTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 45 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
..+.+|||||... +......++..+|++|+|+|.++.. .......+...+. ..+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~---~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD---PEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC---SSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC---CCCCcEEEEEcC
Confidence 4689999999643 5566778899999999999974332 1111112222232 247899999999
Q ss_pred CCCCcCCCCCHHHHHHHHHHcCCeEEEeccC---C---CCCHHHHHHHHHHHHHH
Q 040835 111 SDLETLRAVPTEDAKEFAEKEGLCFMETSAL---E---STNVELAFLTVLTEIYR 159 (206)
Q Consensus 111 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~v~~~~~~l~~~i~~ 159 (206)
+|+........+.+.......+..++++++. + +.|+.+++..+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 9986533322222221111122556666544 4 67888888887766643
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.72 E-value=6.6e-20 Score=152.27 Aligned_cols=144 Identities=24% Similarity=0.260 Sum_probs=75.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-----------------------------ccccceeeEEEEEEECCeEEEEEEEe
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-----------------------------KATIGVEFQTKTLVIHHKNVKAQIWD 51 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~D 51 (206)
|+|.+++|||||+++|+........ ....++++......+......+.|||
T Consensus 182 iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiD 261 (592)
T 3mca_A 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGD 261 (592)
T ss_dssp EECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEE
Confidence 5899999999999999742110000 00113344443444444567899999
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChh---hH---HHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcCCCCC----
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQ---SF---DNVARWLEELRGHADKNII-IMLVGNKSDLETLRAVP---- 120 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---- 120 (206)
|||++.|.......+..+|++|+|+|++++. .+ ......+..+.. .++| +++++||+|+.......
T Consensus 262 TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~~~~~~~~i 338 (592)
T 3mca_A 262 APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSWSEDRFQEI 338 (592)
T ss_dssp EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccccccHHHHHHH
Confidence 9999999888888899999999999998632 11 111122222222 3465 89999999986411111
Q ss_pred HHHHHHHH-HHcCC-----eEEEeccCCCCCHH
Q 040835 121 TEDAKEFA-EKEGL-----CFMETSALESTNVE 147 (206)
Q Consensus 121 ~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~ 147 (206)
..++..+. ...++ +++++||++|.|+.
T Consensus 339 ~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 339 KNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 12334444 33454 69999999999998
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.71 E-value=1.7e-17 Score=125.64 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=74.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhH-------hH--hcCCcE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTS-------AY--YRGAVG 71 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--~~~~d~ 71 (206)
|+|.+|+|||||+|+|++..+..... ..+.+.......+......+.+|||||...+..... .+ .+.+|+
T Consensus 44 vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (270)
T 1h65_A 44 VMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV 122 (270)
T ss_dssp EEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred EECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCE
Confidence 58999999999999999987643221 112233333333334457799999999865532211 22 247999
Q ss_pred EEEEeeCCChhhHHH-HHHHHHHHHhcCCCC--CcEEEEEeCCCCCcCCC
Q 040835 72 AMLVYDITKRQSFDN-VARWLEELRGHADKN--IIIMLVGNKSDLETLRA 118 (206)
Q Consensus 72 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~ 118 (206)
+|+|+|++.. ++.. ...|+..+....+.+ .|+++|+||+|+...+.
T Consensus 123 il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 123 LLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp EEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred EEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 9999988653 2322 235666665543322 79999999999865443
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=3.9e-16 Score=132.06 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=76.0
Q ss_pred CccCCCCCHHHHHHHHhcCC--CCC------C-----Cc---cccceeeEEEEEEECCe-------EEEEEEEeCCCchh
Q 040835 1 LIGDSAVGKSQLLARFARDE--FSL------D-----SK---ATIGVEFQTKTLVIHHK-------NVKAQIWDTAGQER 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--~~~------~-----~~---~~~~~~~~~~~~~~~~~-------~~~~~i~D~~G~~~ 57 (206)
|+|..|+|||||+++|+... +.. . +. ...+.++......+.+. .+.+.||||||+..
T Consensus 15 IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~d 94 (704)
T 2rdo_7 15 ISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD 94 (704)
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccc
Confidence 58999999999999997531 110 0 00 01122332222223222 38899999999999
Q ss_pred hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 58 YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
|...+..+++.+|++|+|+|+++.........|.. ... .++|+++++||+|+.
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRM 147 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCcc
Confidence 98889999999999999999998765444444432 222 468999999999985
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.68 E-value=1.2e-16 Score=135.07 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=75.8
Q ss_pred CccCCCCCHHHHHHHHhcC--CCCCC---Cc---c--------ccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARD--EFSLD---SK---A--------TIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--~~~~~---~~---~--------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|.+|+|||||+++|+.. .+... .. . ..+.++......+......+.+|||||+..|...+..
T Consensus 15 IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~ 94 (693)
T 2xex_A 15 IMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVER 94 (693)
T ss_dssp EECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHH
Confidence 5899999999999999952 21100 00 0 0011111112222233578999999999999888899
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
+++.+|++|+|+|+++..+......|.. +.. .++|+++++||+|+..
T Consensus 95 ~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 95 SLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred HHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999999999999998766655555543 333 3689999999999853
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=131.28 Aligned_cols=151 Identities=14% Similarity=0.148 Sum_probs=74.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC--------ccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------hh----
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS--------KATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------AV---- 61 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---- 61 (206)
|+|++|+|||||++.|++..+.... .++.+...........+....+.+||++|...+. .+
T Consensus 36 lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i 115 (418)
T 2qag_C 36 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI 115 (418)
T ss_dssp EECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHH
Confidence 5899999999999999987663221 1111111111111112333578999999975431 11
Q ss_pred --------------hHhHhcCCc--EEEEEeeCCChhhHHHH-HHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--H
Q 040835 62 --------------TSAYYRGAV--GAMLVYDITKRQSFDNV-ARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT--E 122 (206)
Q Consensus 62 --------------~~~~~~~~d--~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~ 122 (206)
.+.++.+++ +++|+++++. .++... ..|+..+. .++|+++|+||+|+...+++.. .
T Consensus 116 ~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~ 190 (418)
T 2qag_C 116 DSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKK 190 (418)
T ss_dssp HHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHH
Confidence 122334444 4555555541 122222 24555553 3689999999999865344333 5
Q ss_pred HHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 040835 123 DAKEFAEKEGLCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 123 ~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
++...+...+++++++|+.++.++.++|..+...
T Consensus 191 ~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 191 QIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 6677778889999999999999999877666543
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=2.6e-17 Score=130.61 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=43.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEE-------------------ECC-eEEEEEEEeCCCchh-
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA--TIGVEFQTKTLV-------------------IHH-KNVKAQIWDTAGQER- 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~-~~~~~~i~D~~G~~~- 57 (206)
|+|.+|||||||+|+|++........| |...+.....+. +++ ....+.+|||||...
T Consensus 5 ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~ 84 (397)
T 1wxq_A 5 VVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG 84 (397)
T ss_dssp EEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence 589999999999999999873222222 111122211111 122 257899999999753
Q ss_pred ---hhhhhH---hHhcCCcEEEEEeeCCCh
Q 040835 58 ---YRAVTS---AYYRGAVGAMLVYDITKR 81 (206)
Q Consensus 58 ---~~~~~~---~~~~~~d~~i~v~d~~~~ 81 (206)
...+.. .+++.+|++++|+|+++.
T Consensus 85 a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 85 AHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------CCCSSTTCSEEEEEEETTCC
T ss_pred hhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 222233 346899999999999875
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.63 E-value=2.1e-16 Score=115.96 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=90.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcccccee--------------eEEEEEEE----------------CCeEEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVE--------------FQTKTLVI----------------HHKNVKAQIW 50 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~~~~~i~ 50 (206)
|+|.+|||||||+++|+...........+..+ .....+.. ......+.+|
T Consensus 35 i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii 114 (221)
T 2wsm_A 35 IMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDCDLLLI 114 (221)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTCSEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCCCEEEE
Confidence 58999999999999998753211110000000 00011111 1123568899
Q ss_pred eCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040835 51 DTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK 130 (206)
Q Consensus 51 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 130 (206)
||+|..... ..+....+.+++|+|+++.... ...+... .+.|+++++||+|+........+++...+..
T Consensus 115 dt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 183 (221)
T 2wsm_A 115 ENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKMKADAKL 183 (221)
T ss_dssp EEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHH
T ss_pred eCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHHHHHHHH
Confidence 999951110 0111256889999998765321 1111111 1478899999999864333456666666665
Q ss_pred c--CCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 131 E--GLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 131 ~--~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
. +++++++||+++.|++++|+++.+.+...
T Consensus 184 ~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 184 INPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4 47899999999999999999999877543
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.63 E-value=6e-17 Score=127.09 Aligned_cols=108 Identities=9% Similarity=0.043 Sum_probs=65.5
Q ss_pred EEEEEEeCCCch-------------hhhhhhHhHhcCCcEEE-EEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeC
Q 040835 45 VKAQIWDTAGQE-------------RYRAVTSAYYRGAVGAM-LVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNK 110 (206)
Q Consensus 45 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 110 (206)
..+.+|||||.. .+..+...|+..++.+| ++++.+....-.....++ ......+.|+++|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~---~~~~~~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA---KEVDPQGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH---HHHCTTCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH---HHhCcCCCceEEEecc
Confidence 568999999952 34556667776665554 455655422211222233 3333357899999999
Q ss_pred CCCCcCCCCCHHHHHH--HHHHcC-CeEEEeccCCCCCHHHHHHHHHH
Q 040835 111 SDLETLRAVPTEDAKE--FAEKEG-LCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 111 ~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
+|+..........+.. +....+ .+++.+||+++.|+++++..+.+
T Consensus 207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 9986533312221110 000122 25788999999999999998876
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=2.5e-15 Score=123.80 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=78.0
Q ss_pred CccCCCCCHHHHHHHHhcCC---------------------CCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDE---------------------FSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 59 (206)
|+|..++|||||..+|+... +.+. ..--|+++....+.+.+.+..++|+||||+.+|.
T Consensus 36 IiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~-EreRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~ 114 (548)
T 3vqt_A 36 IISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAM-ERERGISVTTSVMQFPYRDRVVNLLDTPGHQDFS 114 (548)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC---------------------CTTTEEEEEETTEEEEEECCCCGGGCS
T ss_pred EEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHH-HHHCCCcEeeceEEEEECCEEEEEEeCCCcHHHH
Confidence 58999999999999997311 1000 1112334444445556677889999999999999
Q ss_pred hhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 60 AVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 60 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
......++.+|++|+|+|+.+.-.......|.... . .++|.++++||+|..
T Consensus 115 ~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~---~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 115 EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-M---RATPVMTFVNKMDRE 165 (548)
T ss_dssp HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCCEEEEEECTTSC
T ss_pred HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-H---hCCceEEEEecccch
Confidence 99999999999999999999875545545554333 2 479999999999974
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=1.6e-14 Score=112.67 Aligned_cols=140 Identities=18% Similarity=0.130 Sum_probs=85.2
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEEECCe---------------EEEEEEEeCCCchhhh----
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA--TIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQERYR---- 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~---- 59 (206)
|+|.+|||||||+|+|++..+.....| |...+.. .+.+++. ...+.+|||||...+.
T Consensus 7 IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~ 84 (363)
T 1jal_A 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGE 84 (363)
T ss_dssp EECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHG
T ss_pred EECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccc
Confidence 589999999999999999764332222 2222222 2233331 2579999999986543
Q ss_pred hh---hHhHhcCCcEEEEEeeCCCh----------hhHHHHHHHHHH---------------------------------
Q 040835 60 AV---TSAYYRGAVGAMLVYDITKR----------QSFDNVARWLEE--------------------------------- 93 (206)
Q Consensus 60 ~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~--------------------------------- 93 (206)
.+ ...+++.+|++++|+|+++. +++.++..+..+
T Consensus 85 gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~~~ 164 (363)
T 1jal_A 85 GLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSV 164 (363)
T ss_dssp GGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHHHH
Confidence 22 23457899999999999862 122222111111
Q ss_pred -------HHh-------------------c-CCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCC
Q 040835 94 -------LRG-------------------H-ADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALE 142 (206)
Q Consensus 94 -------~~~-------------------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 142 (206)
+.. + ....+|+++++|+.|..-........+..++...+.+++.+||+.
T Consensus 165 l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 165 MEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 110 1 113599999999998642112234667778888899999999653
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.60 E-value=9.3e-17 Score=126.05 Aligned_cols=104 Identities=15% Similarity=0.081 Sum_probs=70.2
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED 123 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 123 (206)
...+.||||||... .....+..+|++|+|+|+...+....+.. .-...|+++|+||+|+...... ...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~-~~~ 238 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEA-RLA 238 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHH-HHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHH-HHH
Confidence 46789999999533 23345689999999999876543322211 0124689999999998531111 111
Q ss_pred HHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 124 AKEFAEK----------EGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 124 ~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
...+... ++.+++.+||++++|++++++++.+.+..
T Consensus 239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1222221 25789999999999999999999988765
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.59 E-value=1.9e-17 Score=122.06 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCCCCcCCCCCHHHHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 101 NIIIMLVGNKSDLETLRAVPTEDAKEFAEKE--GLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 101 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
+.|.++++||+|+...+....++...++... +++++++||+++.|++++|.++.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3678999999998653334667777777654 5789999999999999999999887653
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=113.25 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED 123 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 123 (206)
+..+.++||+|.... ...+...+|++++|+|++++.....+.. .+ ...|.++++||+|+...... ...
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~ 233 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRI 233 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHH
Confidence 356899999996321 2345678999999999986543221211 11 24678999999998531110 011
Q ss_pred HHHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q 040835 124 AKEFAE----------KEGLCFMETSALESTNVELAFLTVLTEIYR 159 (206)
Q Consensus 124 ~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~ 159 (206)
...+.. .++.+++.+||+++.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 222221 124578999999999999999999887643
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.54 E-value=8.5e-15 Score=120.73 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=74.6
Q ss_pred CccCCCCCHHHHHHHHhcCCCC---CCCccccceeeEEEEEEECCe-----------------------E----------
Q 040835 1 LIGDSAVGKSQLLARFARDEFS---LDSKATIGVEFQTKTLVIHHK-----------------------N---------- 44 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------------~---------- 44 (206)
|+|.+|+|||||+|+|++..+. ....++. +... .+..... .
T Consensus 70 vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~ 146 (550)
T 2qpt_A 70 VAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCA 146 (550)
T ss_dssp EEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEE-EEECCSSSEEECCC------------------CCCTTEEEE
T ss_pred EECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEE-EEEECCcccccCCceeeecCcccHHHHhhhcccccccceEE
Confidence 5899999999999999998764 2223321 1111 0000000 0
Q ss_pred -------EEEEEEeCCCchh-----------hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEE
Q 040835 45 -------VKAQIWDTAGQER-----------YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIML 106 (206)
Q Consensus 45 -------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iv 106 (206)
..+.+|||||... |...+..++..+|++|+|+|+++.........|+..+.. .+.|+++
T Consensus 147 ~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvil 223 (550)
T 2qpt_A 147 QLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRV 223 (550)
T ss_dssp ECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEE
T ss_pred eccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEE
Confidence 2588999999764 556677788999999999999875444445556555443 4589999
Q ss_pred EEeCCCCCc
Q 040835 107 VGNKSDLET 115 (206)
Q Consensus 107 v~nK~D~~~ 115 (206)
|+||+|+..
T Consensus 224 VlNK~Dl~~ 232 (550)
T 2qpt_A 224 VLNKADMVE 232 (550)
T ss_dssp EEECGGGSC
T ss_pred EEECCCccC
Confidence 999999864
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.54 E-value=1.7e-14 Score=124.27 Aligned_cols=110 Identities=19% Similarity=0.176 Sum_probs=78.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCC----------------Ccc--ccceeeEEEEEE------------ECCeEEEEEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLD----------------SKA--TIGVEFQTKTLV------------IHHKNVKAQIW 50 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~----------------~~~--~~~~~~~~~~~~------------~~~~~~~~~i~ 50 (206)
|+|+.++|||||+++|+...-... ..+ |+.......... .++..+.+.||
T Consensus 24 IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~li 103 (842)
T 1n0u_A 24 VIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLI 103 (842)
T ss_dssp EECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEE
Confidence 589999999999999987421100 011 111111111111 12347889999
Q ss_pred eCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 51 DTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 51 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
||||+.+|...+..+++.+|++|+|+|++++.++.....|..... .++|+++++||+|+.
T Consensus 104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 999999999999999999999999999999877766665654332 468999999999985
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=3.8e-14 Score=111.20 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=88.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEEECC-------------------eEEEEEEEeCCCchhhh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA--TIGVEFQTKTLVIHH-------------------KNVKAQIWDTAGQERYR 59 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~~~ 59 (206)
++|.+|||||||+|+|++........+ |...+.... .+.. ....+.+|||||.....
T Consensus 6 IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a 83 (368)
T 2dby_A 6 IVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGA 83 (368)
T ss_dssp EECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCC
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCccccc
Confidence 589999999999999998653222111 222222222 2221 24579999999976542
Q ss_pred -------hhhHhHhcCCcEEEEEeeCCCh----------hhHHHHHHHHH------------------------------
Q 040835 60 -------AVTSAYYRGAVGAMLVYDITKR----------QSFDNVARWLE------------------------------ 92 (206)
Q Consensus 60 -------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~------------------------------ 92 (206)
......++.+|++++|+|+++. +.+.++..+..
T Consensus 84 ~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~~~ 163 (368)
T 2dby_A 84 HKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPL 163 (368)
T ss_dssp CSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred cccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHHHH
Confidence 1223457899999999999852 11211111000
Q ss_pred ---------HHHh-------------------cC-CCCCcEEEEEeCCCCC--cC-CCCCHHHHHHHHHHcCCeEEEecc
Q 040835 93 ---------ELRG-------------------HA-DKNIIIMLVGNKSDLE--TL-RAVPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 93 ---------~~~~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
.+.. +. -..+|+++++||.|.. .. .......++.++...+++++++||
T Consensus 164 ~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSA 243 (368)
T 2dby_A 164 LEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSA 243 (368)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECH
T ss_pred HHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeec
Confidence 0000 00 1237999999999853 21 123356677888888999999999
Q ss_pred CCCCCHHHH
Q 040835 141 LESTNVELA 149 (206)
Q Consensus 141 ~~~~~v~~~ 149 (206)
+...++.++
T Consensus 244 k~E~el~eL 252 (368)
T 2dby_A 244 RLEAELAEL 252 (368)
T ss_dssp HHHHHHHTS
T ss_pred hhHHHHHHh
Confidence 876555543
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=9.8e-15 Score=122.42 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=79.9
Q ss_pred CccCCCCCHHHHHHHHhcCC--------CCCCCc--------cccceeeEEEEEEECCeEEEEEEEeCCCchhhhhhhHh
Q 040835 1 LIGDSAVGKSQLLARFARDE--------FSLDSK--------ATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRAVTSA 64 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 64 (206)
|+|+.++|||||..+|+... ...... .--|+++....+.+.+.+..++|+||||+.+|......
T Consensus 7 IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~r 86 (638)
T 3j25_A 7 VLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYR 86 (638)
T ss_dssp EECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 58999999999999997421 100000 00144555555566777888999999999999999999
Q ss_pred HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 65 YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
.++.+|++|+|+|+.+.-.......|..... .++|.++++||+|..
T Consensus 87 aL~~~DgavlVVDa~~GV~~qT~~v~~~a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 87 SLSVLDGAILLISAKDGVQAQTRILFHALRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp HHTTCSEEECCEESSCTTCSHHHHHHHHHHH----HTCSCEECCEECCSS
T ss_pred HHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH----cCCCeEEEEeccccc
Confidence 9999999999999987654333344443332 368899999999974
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.49 E-value=6.7e-14 Score=105.22 Aligned_cols=111 Identities=13% Similarity=-0.059 Sum_probs=67.4
Q ss_pred EEEEEEeCCCchhhhhhhH------hHhcCCcEEEEEeeCCChhhHHHHHH-HHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 45 VKAQIWDTAGQERYRAVTS------AYYRGAVGAMLVYDITKRQSFDNVAR-WLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
+.+.||||||......... ..+.. +++|+++|............ +..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5799999999876543221 24455 88888888754322222111 1111111112368999999999986422
Q ss_pred CCCHHHHHH----------------------------HHHHcC--CeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 118 AVPTEDAKE----------------------------FAEKEG--LCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 118 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
.. ++... ++..++ .+++++||++++|++++++++.+.+.
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11 11111 123333 47999999999999999999987654
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.49 E-value=1.8e-14 Score=112.44 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=65.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCH--
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPT-- 121 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 121 (206)
++.+.||||||...... .....+|++++|+|++....+..+.. .. .+.|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence 46799999999754432 35689999999999976533211111 00 1367899999999853111110
Q ss_pred HHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 122 EDAKEFAEK-------EGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 122 ~~~~~~~~~-------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
++....... +..+++.+||+++.|++++++++.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 112221112 1457899999999999999999988764
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3e-13 Score=106.13 Aligned_cols=148 Identities=15% Similarity=0.087 Sum_probs=90.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhh-------hhhhHhHhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERY-------RAVTSAYYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d~~i 73 (206)
++|.||||||||+|+|++........|..+.+.....+.+. +..+.++||||...- .......++.+|+++
T Consensus 77 ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il 154 (376)
T 4a9a_A 77 FVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLF 154 (376)
T ss_dssp EECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEE
T ss_pred EECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccc
Confidence 58999999999999999977554444443334433444444 467899999995321 112334568899999
Q ss_pred EEeeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC--------cCCCCCHHHHHHHHHHcCCeEEEeccCCCC
Q 040835 74 LVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNKSDLE--------TLRAVPTEDAKEFAEKEGLCFMETSALEST 144 (206)
Q Consensus 74 ~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 144 (206)
+|+|.+++.. ++.+...+..+... -...|.++++||.|.. ....+..++...+...+.+.--.+-...+.
T Consensus 155 ~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv 233 (376)
T 4a9a_A 155 IILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDA 233 (376)
T ss_dssp EEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred cccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccC
Confidence 9999998642 22222222222111 1457888999999963 223456777777777665532223333444
Q ss_pred CHHHHHH
Q 040835 145 NVELAFL 151 (206)
Q Consensus 145 ~v~~~~~ 151 (206)
+.+++.+
T Consensus 234 ~eddl~d 240 (376)
T 4a9a_A 234 TVDDLID 240 (376)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4555443
No 205
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=1.6e-13 Score=105.29 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=83.9
Q ss_pred EEEEEEEe-CCC-----chhhhhhhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcC
Q 040835 44 NVKAQIWD-TAG-----QERYRAVTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETL 116 (206)
Q Consensus 44 ~~~~~i~D-~~G-----~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 116 (206)
.+.+.++| +.| ++++..+.+.++.++|++++|+|++++. ++..+.+|+..+.. .++|+++|+||+|+...
T Consensus 49 ~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 49 YVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH
T ss_pred EEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc
Confidence 34555555 323 5667777888999999999999999986 88888899887665 47999999999999642
Q ss_pred CCCC-HHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 040835 117 RAVP-TEDAKEFAEKEGLCFMETSALESTNVELAFLTVL 154 (206)
Q Consensus 117 ~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 154 (206)
+.+. .++...++...+++++++||+++.|+++++..+.
T Consensus 126 ~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 126 EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 2212 3445666677789999999999999999998763
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.43 E-value=2.3e-12 Score=109.44 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=74.5
Q ss_pred CccCCCCCHHHHHHHHhcC--------CCCCCC--------ccccceeeEEEEEEECC-------eEEEEEEEeCCCchh
Q 040835 1 LIGDSAVGKSQLLARFARD--------EFSLDS--------KATIGVEFQTKTLVIHH-------KNVKAQIWDTAGQER 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~--------~~~~~~--------~~~~~~~~~~~~~~~~~-------~~~~~~i~D~~G~~~ 57 (206)
|+|+.++|||||..+|+.. ...... ..--|+++....+++.+ .++.++|+||||+-+
T Consensus 18 IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvD 97 (709)
T 4fn5_A 18 ICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVD 97 (709)
T ss_dssp EECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTT
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcc
Confidence 5899999999999999842 111000 01112333333333322 358899999999999
Q ss_pred hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC
Q 040835 58 YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE 114 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 114 (206)
|.......++.+|++|+|+|+...-.......|...... ++|.++++||+|..
T Consensus 98 F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 98 FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence 999999999999999999999876554444455444433 68999999999974
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=2.3e-13 Score=115.00 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=67.9
Q ss_pred EEEEEeCCCchh-------------hhhhhHhHh-cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 46 KAQIWDTAGQER-------------YRAVTSAYY-RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 46 ~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
.+.++||||... +......++ ..+|++++|+|+++...-.+...++..+. ..+.|+++|+||+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi 227 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL 227 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence 478999999432 233444454 57899999999986433222222333333 3578999999999
Q ss_pred CCCcCCCCCHHHHHH-H-HHHcC-CeEEEeccCCCCCHHHHHHHHHHH
Q 040835 112 DLETLRAVPTEDAKE-F-AEKEG-LCFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 112 D~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
|+............. . ....+ .+++.+||+++.|++++++.+.+.
T Consensus 228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 997543332221110 0 00012 356778999999999999888763
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.42 E-value=1.3e-13 Score=107.39 Aligned_cols=104 Identities=11% Similarity=0.037 Sum_probs=63.8
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTED 123 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 123 (206)
...+.++||+|...-. ......+|.+++++|+...+....+.... . ..+.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence 4678999999964321 23457899999999986543221111111 1 23567778999974311111122
Q ss_pred HHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 124 AKEFAEK----------EGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 124 ~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
...+... +..+++.+|++++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333221 1457899999999999999999987654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=93.71 Aligned_cols=103 Identities=9% Similarity=-0.045 Sum_probs=68.7
Q ss_pred CCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHH----HHhcC-CCCCcEEEEEeCC-CCCcCCCCCHHHHHH
Q 040835 53 AGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEE----LRGHA-DKNIIIMLVGNKS-DLETLRAVPTEDAKE 126 (206)
Q Consensus 53 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~----~~~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 126 (206)
+|+..++.+|+.|+.++|++|||+|.+|++.++ .+..+.. +.... ..++|++|++||. |+. ..++..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence 478889999999999999999999999986443 3332222 22221 2578999999995 664 3455555443
Q ss_pred HHHH----cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 127 FAEK----EGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 127 ~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
...- ..+.+..|||.+|+|+.+.++||.+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3221 2456899999999999999999987654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.25 E-value=5e-12 Score=99.61 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=45.9
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCCchhhhh-----
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQERYRA----- 60 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~~----- 60 (206)
|+|.+|||||||+|+|++..+.....|+.+.......+.+++. ...+.+|||||......
T Consensus 27 IVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl 106 (396)
T 2ohf_A 27 IVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL 106 (396)
T ss_dssp EECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred EECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence 5899999999999999998764433333333333333333331 23589999999776443
Q ss_pred --hhHhHhcCCcEEEEEeeCCChh
Q 040835 61 --VTSAYYRGAVGAMLVYDITKRQ 82 (206)
Q Consensus 61 --~~~~~~~~~d~~i~v~d~~~~~ 82 (206)
.+..+++.+|++++|+|+++.+
T Consensus 107 g~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 107 GNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp CCHHHHHHHTSSSEEEEEEC----
T ss_pred HHHHHHHHHhcCeEEEEEecCCCc
Confidence 4567789999999999987643
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=1.9e-10 Score=90.83 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=53.9
Q ss_pred CccCCCCCHHHHHHHHhcCCC-CCCCccccceeeEEEEEEECCe---------------EEEEEEEeCCCchh-------
Q 040835 1 LIGDSAVGKSQLLARFARDEF-SLDSKATIGVEFQTKTLVIHHK---------------NVKAQIWDTAGQER------- 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------- 57 (206)
|+|++|||||||+|+|++... .....|..+.......+.+.+. ...+.+||+||...
T Consensus 25 iVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~ 104 (392)
T 1ni3_A 25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG 104 (392)
T ss_dssp EEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred EECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence 589999999999999999765 3333343333333334444431 13589999999532
Q ss_pred hhhhhHhHhcCCcEEEEEeeCCC
Q 040835 58 YRAVTSAYYRGAVGAMLVYDITK 80 (206)
Q Consensus 58 ~~~~~~~~~~~~d~~i~v~d~~~ 80 (206)
+.......++.+|++++|+|..+
T Consensus 105 L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 105 LGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SCHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 22234556789999999999864
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.19 E-value=2.6e-11 Score=90.90 Aligned_cols=105 Identities=8% Similarity=-0.030 Sum_probs=73.2
Q ss_pred CCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHH---HHHHHHHHHHhcC-CCCCcEEEEEeC-CCCCcCCCCCHHHHHH
Q 040835 52 TAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFD---NVARWLEELRGHA-DKNIIIMLVGNK-SDLETLRAVPTEDAKE 126 (206)
Q Consensus 52 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~~ 126 (206)
.+|++.++..|+.|+.++|++|||+|.+|++.++ ++.+++..+.... ..++|++|++|| .|+. ..++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp--~Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc--CCCCHHHHHH
Confidence 4578889999999999999999999999987543 2222222222211 257999999996 5774 3445555443
Q ss_pred HHHH----cCCeEEEeccCCCCCHHHHHHHHHHHHH
Q 040835 127 FAEK----EGLCFMETSALESTNVELAFLTVLTEIY 158 (206)
Q Consensus 127 ~~~~----~~~~~~~~Sa~~~~~v~~~~~~l~~~i~ 158 (206)
...- ....+..|||.+|+|+.+.++|+.+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3221 2346899999999999999999998764
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=7.8e-10 Score=86.98 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=72.9
Q ss_pred CchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH----HH
Q 040835 54 GQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF----AE 129 (206)
Q Consensus 54 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 129 (206)
..+.|...+..+.+.++++++|+|+++.. ..|...+.+.. .+.|+++|+||+|+... ....++..++ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHH
Confidence 46788999999999999999999999853 34544454443 37899999999999653 3334444443 56
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 040835 130 KEGL---CFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 130 ~~~~---~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
..|+ +++.+||+++.|+++++..+.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999888653
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=4.4e-11 Score=94.14 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=78.0
Q ss_pred CccCCCCCHHHHHHHHhcC-----CCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchhhh-------h-hhHhHh-
Q 040835 1 LIGDSAVGKSQLLARFARD-----EFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYR-------A-VTSAYY- 66 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~-~~~~~~- 66 (206)
++|.+|+|||||+|+|++. ...... ...+++.......+... +.++||||..... . ....++
T Consensus 167 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 242 (369)
T 3ec1_A 167 VVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKIITP 242 (369)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHSC
T ss_pred EEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHhc
Confidence 5899999999999999986 221111 12234554444444332 7899999953221 1 112222
Q ss_pred -cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEeccCCCCC
Q 040835 67 -RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETSALESTN 145 (206)
Q Consensus 67 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 145 (206)
...+.+++++++...--+..+.. +......+.|+++++||.|....... ......+.+..|..+...++.+..+
T Consensus 243 ~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 243 KREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp SSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred ccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhhhh
Confidence 67899999999843211111111 12223356899999999998643332 2334455555666655555544333
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.96 E-value=1.6e-10 Score=94.01 Aligned_cols=102 Identities=15% Similarity=0.038 Sum_probs=61.5
Q ss_pred EEEEEEEeCCCchhhhh-hh---HhH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcE-EEEEeCCCCCcC
Q 040835 44 NVKAQIWDTAGQERYRA-VT---SAY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIII-MLVGNKSDLETL 116 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~ 116 (206)
.+.+.||||||...... .. ..+ +..+|.+++|+|+........ ....+.. .+|+ .+|+||+|....
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTSCCC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCccccc
Confidence 46789999999643211 11 111 227899999999987543211 1222222 1564 889999998632
Q ss_pred CCCCHHHHHHHHHHcCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q 040835 117 RAVPTEDAKEFAEKEGLCF------------------METSALESTN-VELAFLTVLTE 156 (206)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~l~~~ 156 (206)
. ..........++|+ +.+|+..+.| +.++++++.+.
T Consensus 256 ~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1 11233444555554 2358888988 88888888755
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=3.2e-09 Score=83.55 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=70.7
Q ss_pred CchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHH----HH
Q 040835 54 GQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEF----AE 129 (206)
Q Consensus 54 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~ 129 (206)
.++.|...+..+++.++++++|+|+++..+ .|...+.... .+.|+++|+||+|+.+ .....+...++ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~-~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLP-RSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSC-TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCC-CccCHHHHHHHHHHHHH
Confidence 478899999999999999999999998763 2333333333 3689999999999975 23334444443 55
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHH
Q 040835 130 KEGL---CFMETSALESTNVELAFLTVLTE 156 (206)
Q Consensus 130 ~~~~---~~~~~Sa~~~~~v~~~~~~l~~~ 156 (206)
..|+ .++.+||+++.|++++++.+.+.
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 5676 68999999999999999888654
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=5.4e-11 Score=93.58 Aligned_cols=131 Identities=11% Similarity=0.121 Sum_probs=71.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCC-----CCccccceeeEEEEEEECCeEEEEEEEeCCCchhhhh----h----hHhH--
Q 040835 1 LIGDSAVGKSQLLARFARDEFSL-----DSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQERYRA----V----TSAY-- 65 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~----~~~~-- 65 (206)
++|.+|+|||||+|+|++..... ......+++.......+... +.++||||...... + ...+
T Consensus 165 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 241 (368)
T 3h2y_A 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLITP 241 (368)
T ss_dssp EEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHHHSC
T ss_pred EecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHhcc
Confidence 57999999999999999863211 11122234444444444332 78999999532211 1 1111
Q ss_pred hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 66 YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 66 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
....+.++++++.........+.. +......+.|+++++||+|...... .......+.+..|..+...+
T Consensus 242 ~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 242 TKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp SSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSC
T ss_pred ccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCc
Confidence 356788899988743211111111 1222335789999999999864222 23334444555565444444
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.79 E-value=1.4e-08 Score=76.98 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=70.0
Q ss_pred EEeCCCch-hhhhhhHhHhcCCcEEEEEeeCCChhhHH--HHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHH
Q 040835 49 IWDTAGQE-RYRAVTSAYYRGAVGAMLVYDITKRQSFD--NVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAK 125 (206)
Q Consensus 49 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 125 (206)
|-..||+. .........+..+|+++.|+|+.++.+.. .+..|+ .++|.++|+||+|+.... ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 44578875 44556677889999999999999887653 334332 368999999999996411 112223
Q ss_pred HHHHHcCCeEEEeccCCCCCHHHHHHHHHHHHHHH
Q 040835 126 EFAEKEGLCFMETSALESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 126 ~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~i~~~ 160 (206)
++.+..+++++.+||.++.|+++++..+.+.+...
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999888776544
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.76 E-value=9.3e-09 Score=81.82 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=31.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcc--ccceeeEEEEEEECC--eEEEEEEEeCCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKA--TIGVEFQTKTLVIHH--KNVKAQIWDTAGQ 55 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~i~D~~G~ 55 (206)
|+|++|+|||||++.|++..+...... ..+.......+.... ....+.++|++|.
T Consensus 47 LvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp EECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred EECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhh
Confidence 589999999999999998754321111 111222222222222 2236889999874
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.74 E-value=1.7e-07 Score=74.46 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=78.8
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCcccc-ceeeE-EEEEEECCeEEEEEEEeCCCchhhhhhhHh-----HhcCCcEEE
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATI-GVEFQ-TKTLVIHHKNVKAQIWDTAGQERYRAVTSA-----YYRGAVGAM 73 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~~~d~~i 73 (206)
|+|++|||||||+|.|.+-.......... +.... ...+.-......+.+||++|.......... -+...+.++
T Consensus 74 lvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~ 153 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI 153 (413)
T ss_dssp EEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE
T ss_pred EECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE
Confidence 58999999999999999843322111111 11100 001111111124789999985321111111 133445555
Q ss_pred EEeeCC--ChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCC-------cCCCCCHHHH----HHHH----HHcC---C
Q 040835 74 LVYDIT--KRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLE-------TLRAVPTEDA----KEFA----EKEG---L 133 (206)
Q Consensus 74 ~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~~---~ 133 (206)
+ ++.. ...... +...+.. .+.|+++|.||.|+. .-+.....++ ..+. .+.| .
T Consensus 154 ~-lS~G~~~kqrv~----la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~ 225 (413)
T 1tq4_A 154 I-ISATRFKKNDID----IAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEP 225 (413)
T ss_dssp E-EESSCCCHHHHH----HHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred E-eCCCCccHHHHH----HHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4 7765 322211 1122222 358999999999962 1122233333 3332 1222 3
Q ss_pred eEEEecc--CCCCCHHHHHHHHHHHHHHH
Q 040835 134 CFMETSA--LESTNVELAFLTVLTEIYRI 160 (206)
Q Consensus 134 ~~~~~Sa--~~~~~v~~~~~~l~~~i~~~ 160 (206)
.++.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 226 ~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 226 PIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred cEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 5788899 45567999988888776443
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.58 E-value=1.9e-07 Score=70.27 Aligned_cols=132 Identities=20% Similarity=0.200 Sum_probs=65.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCc-------cccceeeEEEEEEEC--CeEEEEEEEeCCCchh----------h---
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSK-------ATIGVEFQTKTLVIH--HKNVKAQIWDTAGQER----------Y--- 58 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~----------~--- 58 (206)
|+|+.|+|||||++.|++........ ............... .-...+.++|++|... .
T Consensus 7 lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~ 86 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKY 86 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHH
Confidence 58999999999999999854322110 000000011111111 1223678999987321 0
Q ss_pred -----hhhhHh----------HhcCCcEEEEEeeCCC-hhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--C
Q 040835 59 -----RAVTSA----------YYRGAVGAMLVYDITK-RQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--P 120 (206)
Q Consensus 59 -----~~~~~~----------~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 120 (206)
...... .+..+++.++++|... +-.-.+ ...+..+.. . +++++|++|.|.....+. .
T Consensus 87 ~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~-~~vI~Vi~K~D~lt~~e~~~~ 161 (270)
T 3sop_A 87 INEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---V-VNIIPVIAKADTMTLEEKSEF 161 (270)
T ss_dssp HHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---T-SEEEEEETTGGGSCHHHHHHH
T ss_pred HHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---c-CcEEEEEeccccCCHHHHHHH
Confidence 000001 1223688899999653 211111 223333332 3 899999999997532211 1
Q ss_pred HHHHHHHHHHcCCeEEE
Q 040835 121 TEDAKEFAEKEGLCFME 137 (206)
Q Consensus 121 ~~~~~~~~~~~~~~~~~ 137 (206)
...+.......++.+|.
T Consensus 162 k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 162 KQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHcCccccC
Confidence 12234444556777664
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.55 E-value=1.2e-07 Score=75.82 Aligned_cols=86 Identities=20% Similarity=0.067 Sum_probs=52.8
Q ss_pred EEEEEEeCCCchhhh-----hhhH-hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYR-----AVTS-AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~-----~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
+.+.|+||+|..... .+.. .....+|.+++|+|+........ ....+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcc---
Confidence 678999999943211 1111 12335789999999986543222 22333332 234678999999753
Q ss_pred CCHHHHHHHHHHcCCeEEEecc
Q 040835 119 VPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
....+..+....++|+.+++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 344556666678899877764
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.36 E-value=1.4e-07 Score=75.29 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCchh--hh----hhhHhH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCc
Q 040835 44 NVKAQIWDTAGQER--YR----AVTSAY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLET 115 (206)
Q Consensus 44 ~~~~~i~D~~G~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 115 (206)
...+.|+||||... .. .....+ ....+.+++|+|+........ ....+.... .+..||+||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc
Confidence 45688999999533 11 111111 124689999999986543222 223333221 35778999999753
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEeccCCCCCH
Q 040835 116 LRAVPTEDAKEFAEKEGLCFMETSALESTNV 146 (206)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 146 (206)
....+.......++|+..++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 445566677778999887775 5544
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.36 E-value=1.2e-06 Score=70.14 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=49.4
Q ss_pred EEEEEEEeCCCchhhhh-h---hHhH--hcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCC-c-EEEEEeCCCCCc
Q 040835 44 NVKAQIWDTAGQERYRA-V---TSAY--YRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNI-I-IMLVGNKSDLET 115 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~ 115 (206)
.+.+.|+||||...... . ...+ +..+|.+++|+|+..... .......+. ... | ..+|+||.|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCcc
Confidence 45789999999643211 1 1111 226899999999876532 112222222 234 5 889999999753
Q ss_pred CCCCCHHHHHHHHHHcCCeEEEe
Q 040835 116 LRAVPTEDAKEFAEKEGLCFMET 138 (206)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~ 138 (206)
....+..+....+.++..+
T Consensus 253 ----~~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 ----KGGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----TTHHHHHHHHHSSCCEEEE
T ss_pred ----chHHHHHHHHHHCCCEEEe
Confidence 1223445666777776555
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.34 E-value=2e-07 Score=70.60 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=30.5
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 56 (206)
|+|.||||||||+|+|.+......... .+.+.....+.++ ..+.+|||||..
T Consensus 125 ~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~~~~---~~~~l~DtpG~~ 176 (282)
T 1puj_A 125 IIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWVKVG---KELELLDTPGIL 176 (282)
T ss_dssp EEESTTSSHHHHHHHHHTSCCC-------------CCEEET---TTEEEEECCCCC
T ss_pred EEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEEEeC---CCEEEEECcCcC
Confidence 589999999999999998764333221 1333333223332 257899999964
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.29 E-value=1.5e-07 Score=70.58 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=31.7
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER 57 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 57 (206)
|+|.+|+|||||+|+|.+....... ++.+.+.....+..+ ..+.+|||||...
T Consensus 104 ~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 104 IVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp EEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred EeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 5899999999999999987653322 222333332222222 3578999999653
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.27 E-value=2.5e-07 Score=70.79 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=61.5
Q ss_pred hhhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC--CHHHHHHHHHHcCCeEE
Q 040835 60 AVTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV--PTEDAKEFAEKEGLCFM 136 (206)
Q Consensus 60 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~ 136 (206)
.+.+..+.++|.+++|+|+.++. +...+.+++..... .++|.++|+||+|+..+... ..+....+....|++++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 34455788999999999998765 34455555544333 46889999999999752210 12334445555688999
Q ss_pred EeccCCCCCHHHHHH
Q 040835 137 ETSALESTNVELAFL 151 (206)
Q Consensus 137 ~~Sa~~~~~v~~~~~ 151 (206)
.+|+.++.|+++++.
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999999888776654
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.26 E-value=4e-07 Score=68.26 Aligned_cols=93 Identities=15% Similarity=0.068 Sum_probs=61.1
Q ss_pred CCCchh-hhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHHHHHHHH
Q 040835 52 TAGQER-YRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDAKEFAEK 130 (206)
Q Consensus 52 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 130 (206)
.||+.. ........+.++|++|.|+|+.++.+..... +. .. ++|.++|+||+|+.... ..+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 466542 2335667789999999999999876543210 11 11 68999999999996421 11223344455
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHH
Q 040835 131 EGLCFMETSALESTNVELAFLTVLT 155 (206)
Q Consensus 131 ~~~~~~~~Sa~~~~~v~~~~~~l~~ 155 (206)
.|+++ .+||.++.|+++++..+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 68888 9999999999998877654
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.24 E-value=2.2e-06 Score=65.34 Aligned_cols=92 Identities=15% Similarity=0.033 Sum_probs=57.2
Q ss_pred EEEEEEEeCCCchh--hhh-hhH-----hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCC
Q 040835 44 NVKAQIWDTAGQER--YRA-VTS-----AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLE 114 (206)
Q Consensus 44 ~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~ 114 (206)
.+.+.|+||||... ... +.. .....+|.+++|+|+...... ......+.. ..+ ..+|+||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 45689999999765 221 111 124478999999998753221 122222332 245 67899999974
Q ss_pred cCCCCCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 115 TLRAVPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
. ....+..+....++|+..++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 3 34456677778899988776 4555544
No 230
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.04 E-value=6.7e-06 Score=63.53 Aligned_cols=92 Identities=11% Similarity=0.015 Sum_probs=52.7
Q ss_pred EEEEEEeCCCchhhhhh----hHh--HhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCC
Q 040835 45 VKAQIWDTAGQERYRAV----TSA--YYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRA 118 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 118 (206)
..+.++|++|....... ... ..-..|-.++++|+.... .+......+.... -...+++||.|...
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a--- 282 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA--- 282 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS---
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc---
Confidence 34668999995332111 111 112478889999986553 2222233333221 22468899999643
Q ss_pred CCHHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 040835 119 VPTEDAKEFAEKEGLCFMETSALESTNVEL 148 (206)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 148 (206)
..-.+.......+.|+..++ +|+++++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 23445677777899988777 5665543
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.01 E-value=4e-06 Score=69.51 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=34.1
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCC-ccccceeeEEEEE--EE-CCeEEEEEEEeCCCch
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDS-KATIGVEFQTKTL--VI-HHKNVKAQIWDTAGQE 56 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~-~~~~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~ 56 (206)
|+|.||||||||+|+|++....... ..+.+.+...... .+ ......+.++||||..
T Consensus 43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 5899999999999999997643211 1111222222111 11 1234578999999964
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.98 E-value=1.4e-05 Score=62.31 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=55.3
Q ss_pred HhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCC-CHHHHHHHHHHcCCeEEEeccCC
Q 040835 65 YYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAV-PTEDAKEFAEKEGLCFMETSALE 142 (206)
Q Consensus 65 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 142 (206)
...++|.+++|.+. ++. +...+.+++..... .++|.++|+||+|+..+... ..++........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 36789999888665 444 34455555544433 35788999999999642110 01122333445689999999999
Q ss_pred CCCHHHHHHH
Q 040835 143 STNVELAFLT 152 (206)
Q Consensus 143 ~~~v~~~~~~ 152 (206)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999987654
No 233
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.95 E-value=2.2e-05 Score=65.66 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=18.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|||||||++.+.+-.
T Consensus 50 IvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 50 VIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCTTSCHHHHHHHHHSCC
T ss_pred EECCCCChHHHHHHHHhCCC
Confidence 68999999999999999864
No 234
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.65 E-value=2e-05 Score=63.76 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=46.3
Q ss_pred EEEEEEeCCCchhhhh----h---hHhHhc-----CCcEEEEEeeCCChhh-HHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 45 VKAQIWDTAGQERYRA----V---TSAYYR-----GAVGAMLVYDITKRQS-FDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~----~---~~~~~~-----~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
+.+.|+||+|...... . .....+ ..+-+++++|.+.... +..+ ..+.... ++ ..+|+||.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a----k~f~~~~--~i-tgvIlTKL 448 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA----KLFHEAV--GL-TGITLTKL 448 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH----HHHHHHT--CC-SEEEEECG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH----HHHHhhc--CC-CEEEEEcC
Confidence 4578999999532111 1 111111 2567888999875532 2222 2233221 22 35789999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 112 DLETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
|-.. ..-.+..+...+++++.++.
T Consensus 449 D~ta----kgG~~lsi~~~~~~PI~fig 472 (503)
T 2yhs_A 449 DGTA----KGGVIFSVADQFGIPIRYIG 472 (503)
T ss_dssp GGCS----CCTHHHHHHHHHCCCEEEEE
T ss_pred CCcc----cccHHHHHHHHHCCCEEEEe
Confidence 9532 23346677777888876643
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.53 E-value=3.6e-06 Score=68.26 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred CccCCCCCHHHHHHHHhcCCCCCCCccccceeeEEEEEEECCeEEEEEEEeCCCchh--hhhhh--------HhHhcCCc
Q 040835 1 LIGDSAVGKSQLLARFARDEFSLDSKATIGVEFQTKTLVIHHKNVKAQIWDTAGQER--YRAVT--------SAYYRGAV 70 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~~~~~~~d 70 (206)
++|.+|+||||+.++|....... ..++.............+......+||..|.+. ....+ ..++...+
T Consensus 44 lvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~ 122 (469)
T 1bif_A 44 MVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEG 122 (469)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999987643211 111111110000000011123346789988732 22222 45666677
Q ss_pred EEEEEeeCCChhhHHHHHHHHHHHHh
Q 040835 71 GAMLVYDITKRQSFDNVARWLEELRG 96 (206)
Q Consensus 71 ~~i~v~d~~~~~s~~~~~~~~~~~~~ 96 (206)
+.++|+|.++. .......|+..+..
T Consensus 123 G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 123 GHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp CSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 88899999987 34555566665554
No 236
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.46 E-value=0.00011 Score=58.95 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++++|||+|+|.|++.
T Consensus 72 V~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 72 VAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhh
Confidence 5899999999999999863
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.42 E-value=0.00022 Score=57.17 Aligned_cols=83 Identities=17% Similarity=0.078 Sum_probs=46.4
Q ss_pred EEEEEEEeCCCchhhhh-hhH-----hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCc-EEEEEeCCCCCcC
Q 040835 44 NVKAQIWDTAGQERYRA-VTS-----AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNII-IMLVGNKSDLETL 116 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 116 (206)
.+.+.|+||||...... ... ..+..++.+++|+|+....... .....+.. ..+ .-+|+||.|...
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~----~l~i~gvVlnK~D~~~- 254 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE----ALPLTGVVLTKVDGDA- 254 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH----HSCCCCEEEECTTSSS-
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc----cCCCeEEEEecCCCCc-
Confidence 46789999999643321 111 1244788999999987543221 12222322 133 347899999753
Q ss_pred CCCCHHHHHHHHHHcCCeEEE
Q 040835 117 RAVPTEDAKEFAEKEGLCFME 137 (206)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ 137 (206)
+. ..+..+....+.|+..
T Consensus 255 ~~---g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 255 RG---GAALSIRHITGKPIKF 272 (433)
T ss_dssp CC---THHHHHHHHHCCCEEE
T ss_pred cH---HHHHHHHHHHCCCeEE
Confidence 11 2344556666766433
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.25 E-value=0.00027 Score=54.37 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=49.1
Q ss_pred EEEEEEEeCCCchhhhhhh-H------hHh-----cCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 44 NVKAQIWDTAGQERYRAVT-S------AYY-----RGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~-~------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
.+.+.|+||||........ . ..+ ..+|.+++|++.... ...+... ..+... -...-+|+||.
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~-~~~~~~---~~i~GvVltk~ 264 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA-EEFSKV---ADVSGIILTKM 264 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH-HHHTTT---SCCCEEEEECG
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH-HHHhhc---CCCcEEEEeCC
Confidence 3568999999964432111 0 111 247889999998743 2222221 122221 12345789999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 112 DLETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
|... ....+..+....++|+..+.
T Consensus 265 d~~~----~~g~~~~~~~~~~~Pi~~i~ 288 (320)
T 1zu4_A 265 DSTS----KGGIGLAIKELLNIPIKMIG 288 (320)
T ss_dssp GGCS----CTTHHHHHHHHHCCCEEEEE
T ss_pred CCCC----chhHHHHHHHHHCcCEEEEe
Confidence 9643 12356677778898876664
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.18 E-value=0.00018 Score=56.05 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=18.7
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|++|||||||+|.|.+...
T Consensus 220 lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 220 FAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EECCTTSSHHHHHHHHHCCSS
T ss_pred EECCCCccHHHHHHHHhcccc
Confidence 589999999999999998654
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=5.1e-05 Score=57.97 Aligned_cols=21 Identities=38% Similarity=0.477 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|++|||||||+|.|.+...
T Consensus 178 lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EEESHHHHHHHHHHHHCC---
T ss_pred EECCCCCCHHHHHHHhccccc
Confidence 589999999999999987543
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.11 E-value=0.0018 Score=51.68 Aligned_cols=86 Identities=17% Similarity=0.067 Sum_probs=48.4
Q ss_pred EEEEEEEeCCCchhhhh-hhH-----hHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRA-VTS-----AYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
.+.+.|+||||...... ... ...-.+|.+++|+|...... .......+.... ...-+|+||.|...
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~l---~i~GVIlTKlD~~~-- 251 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEKV---GVTGLVLTKLDGDA-- 251 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHT---CCCEEEEESGGGCS--
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhcC---CceEEEEeCcCCcc--
Confidence 35689999998543211 111 11235888999999864322 112222233211 12567899999643
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 040835 118 AVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~S 139 (206)
....+..+....+.|+..+.
T Consensus 252 --~~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 --RGGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp --SCHHHHHHHHHHCCCEEEEE
T ss_pred --cHHHHHHHHHHHCCCEEEEe
Confidence 22345556677788876654
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.06 E-value=0.00075 Score=51.46 Aligned_cols=17 Identities=53% Similarity=0.835 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
++|++|+|||||+|.|.
T Consensus 170 l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EECSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 58999999999999998
No 243
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.96 E-value=0.00025 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||++.+.+..
T Consensus 5 l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 58999999999999988743
No 244
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.96 E-value=0.00025 Score=49.74 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|.+.
T Consensus 10 i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 10 LLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 5899999999999999874
No 245
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00031 Score=50.12 Aligned_cols=18 Identities=44% Similarity=0.637 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||++.|.+
T Consensus 9 lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 9 LSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 589999999999999886
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.82 E-value=0.00038 Score=49.08 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|.+.
T Consensus 14 l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEECTTSCHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 5899999999999999875
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.78 E-value=0.0004 Score=48.92 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|||||||++.|.+.
T Consensus 6 l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EESSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 5899999999999999863
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.78 E-value=0.00041 Score=49.41 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|.+.
T Consensus 12 l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 5899999999999999874
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.76 E-value=0.00043 Score=49.63 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|||||||++.+.+-.
T Consensus 25 l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 58999999999999988743
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.74 E-value=0.0029 Score=44.90 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=57.0
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcC--CCCCcEEEEEeCCCCCcCCCCCH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHA--DKNIIIMLVGNKSDLETLRAVPT 121 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~ 121 (206)
.+.+.|+|+|+.. .......+..+|.+|+++..+... ..+..++..+.... ..+.++.+|+|+.|... . ..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~ 147 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-ML 147 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EE
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HH
Confidence 3678999999865 334556677799999999876543 55666666665543 24567799999998532 1 22
Q ss_pred HHHHHHHHHcCCeEE
Q 040835 122 EDAKEFAEKEGLCFM 136 (206)
Q Consensus 122 ~~~~~~~~~~~~~~~ 136 (206)
.+..++.+.++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 445566666666554
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.74 E-value=0.00042 Score=48.18 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.1
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
++|++|||||||++.+.
T Consensus 14 l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EECCTTSCHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHc
Confidence 58999999999999754
No 252
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.72 E-value=0.0005 Score=49.93 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|||||||++.|.+..
T Consensus 21 l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 21 VSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EECCTTSCHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 58999999999999998743
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.67 E-value=0.00055 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.|.+..
T Consensus 28 lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 28 ICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 58999999999999998743
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.63 E-value=0.00063 Score=49.92 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|||||||++.+.+-
T Consensus 36 iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 36 IMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 5899999999999988874
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.61 E-value=0.00067 Score=46.61 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+..
T Consensus 38 L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 38 LNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EECSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 57999999999999998854
No 256
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.59 E-value=0.00071 Score=48.23 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|...
T Consensus 24 l~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHhh
Confidence 5899999999999999864
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.58 E-value=0.00065 Score=49.47 Aligned_cols=19 Identities=42% Similarity=0.466 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 35 iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 35 IIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEECTTSCHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998874
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.57 E-value=0.00058 Score=49.01 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|.+.
T Consensus 27 I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EECCTTSCTHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999988764
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.56 E-value=0.0008 Score=49.54 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 29 liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5899999999999998875
No 260
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.55 E-value=0.00078 Score=47.06 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|++|+|||||++.+.+.
T Consensus 43 l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 43 FVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp ECCSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998764
No 261
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.55 E-value=0.00075 Score=48.44 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|||||||++.|....
T Consensus 13 l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 13 LSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EECCTTSCHHHHHHHHHHST
T ss_pred EECcCCCCHHHHHHHHHhhC
Confidence 57999999999999998753
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.53 E-value=0.0008 Score=47.37 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||++.|.+
T Consensus 7 l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 589999999999999975
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.51 E-value=0.00086 Score=48.50 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 40 iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998874
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.49 E-value=0.00089 Score=49.97 Aligned_cols=19 Identities=37% Similarity=0.427 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 37 liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 37 IIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998874
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.47 E-value=0.00093 Score=46.22 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|.+.
T Consensus 9 l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998763
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.47 E-value=0.00093 Score=50.23 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|||||||++.+.+-.
T Consensus 39 iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 39 ILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 58999999999999988743
No 267
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.46 E-value=0.0034 Score=49.07 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|++|+|||||++.+....
T Consensus 49 i~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 49 LLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999988643
No 268
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.46 E-value=0.00092 Score=49.73 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 38 liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 38 IIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988743
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.45 E-value=0.00095 Score=49.04 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 36 i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EECSTTSSHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998874
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.44 E-value=0.00099 Score=49.84 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 42 liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EECCTTSCHHHHHHHHTSSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 58999999999999988843
No 271
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.43 E-value=0.0035 Score=42.08 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||++++.+...
T Consensus 32 l~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 32 LTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEETTCCHHHHHGGGCCT
T ss_pred EECCCCccHHHHHHHHHHh
Confidence 4799999999999877653
No 272
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.0066 Score=46.95 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||||++.+.+.
T Consensus 41 l~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 41 LYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EECSTTSSHHHHHHTHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998773
No 273
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.42 E-value=0.001 Score=47.41 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|||||||++.|.+..
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 58999999999999988754
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.42 E-value=0.001 Score=49.62 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 55 liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCCcHHHHHHHHHcC
Confidence 5899999999999998874
No 275
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.41 E-value=0.0011 Score=48.51 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 39 i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 39 VAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988743
No 276
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.41 E-value=0.0011 Score=49.38 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 46 l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 46 LIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998874
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0011 Score=47.29 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|...
T Consensus 17 l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 17 VCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998764
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.40 E-value=0.0011 Score=48.86 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 37 l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 37 LIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5899999999999998874
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.39 E-value=0.0011 Score=47.22 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|.+.
T Consensus 34 l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998763
No 280
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.39 E-value=0.0011 Score=49.05 Aligned_cols=19 Identities=53% Similarity=0.730 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 31 liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 31 LVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 5899999999999998874
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.39 E-value=0.0011 Score=48.84 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 33 i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 33 FAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998874
No 282
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.38 E-value=0.0011 Score=46.91 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.+.+.
T Consensus 6 i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EESCCSSCHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhh
Confidence 5899999999999998874
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.37 E-value=0.0012 Score=48.89 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 34 l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 34 LMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EECSTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5899999999999999885
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.37 E-value=0.0011 Score=48.94 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 40 i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998875
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.37 E-value=0.0012 Score=45.53 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=15.0
Q ss_pred CccCCCCCHHHHHHHH
Q 040835 1 LIGDSAVGKSQLLARF 16 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l 16 (206)
|+|++||||||+.+.|
T Consensus 6 l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 5799999999999998
No 286
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.36 E-value=0.0014 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=18.4
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
++|++|+|||||+|.|.+...
T Consensus 174 l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EECSTTSSHHHHHHHHSTTCC
T ss_pred EECCCCCcHHHHHHHhccccc
Confidence 589999999999999988544
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.35 E-value=0.0013 Score=48.44 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|++|||||||++.|.
T Consensus 32 l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 32 ILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 58999999999999998
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.34 E-value=0.0013 Score=49.20 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 51 l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECCTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5899999999999999885
No 289
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.34 E-value=0.0012 Score=49.25 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.+.+.
T Consensus 30 i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 30 VTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EECSTTCSHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHh
Confidence 5899999999999998873
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.34 E-value=0.0013 Score=45.60 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 7 i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHh
Confidence 579999999999999986
No 291
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.33 E-value=0.0012 Score=49.67 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 52 liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 52 LYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 58999999999999988743
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.32 E-value=0.0014 Score=46.28 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||+++|+..
T Consensus 6 i~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 6 ISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999999864
No 293
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.32 E-value=0.02 Score=40.91 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=56.6
Q ss_pred EEEEEEEeCCCc-hhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHH
Q 040835 44 NVKAQIWDTAGQ-ERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTE 122 (206)
Q Consensus 44 ~~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 122 (206)
.+.+.|+|+|+. ... .....+..+|.+|+++..+ ..++..+..++..+.... +.++.+|+|+.|.... ....
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~ 139 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGD 139 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHH
Confidence 356899999886 432 3455678899999988875 345566666666666533 4668899999986420 1234
Q ss_pred HHHHHHHHcCCeEE
Q 040835 123 DAKEFAEKEGLCFM 136 (206)
Q Consensus 123 ~~~~~~~~~~~~~~ 136 (206)
+..+..++++.+++
T Consensus 140 ~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 140 EARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCchh
Confidence 55566666776654
No 294
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.30 E-value=0.0014 Score=45.18 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++||||||+.+.|...
T Consensus 6 l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998753
No 295
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.30 E-value=0.0051 Score=43.83 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 43 l~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 43 FSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999988764
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.29 E-value=0.0013 Score=48.98 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 51 i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 51 LVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 5899999999999998874
No 297
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.29 E-value=0.0013 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 36 VLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988743
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.28 E-value=0.00088 Score=48.21 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 27 liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 27 GLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EECCTTSSTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999999875
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.27 E-value=0.0014 Score=49.05 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 38 liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 38 VAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 5899999999999998874
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.27 E-value=0.0014 Score=49.20 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 50 i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 50 LVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999998875
No 301
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.27 E-value=0.0012 Score=47.21 Aligned_cols=19 Identities=37% Similarity=0.597 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|||||||++.|.+.
T Consensus 11 i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 11 IAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998773
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.27 E-value=0.0014 Score=45.72 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||+++|...
T Consensus 11 i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHh
Confidence 5799999999999999874
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.26 E-value=0.0014 Score=45.45 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||++.|.+
T Consensus 13 l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 13 LMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 304
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.26 E-value=0.0015 Score=47.87 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+|||||++.++.
T Consensus 35 l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 589999999999998883
No 305
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.23 E-value=0.0013 Score=47.54 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=18.0
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|++|+|||||++.+.+...
T Consensus 30 l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEESTTSSHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999987433
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.15 E-value=0.0018 Score=48.38 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 35 i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 35 ILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988754
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.14 E-value=0.0017 Score=46.17 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|.+|||||||++.|...
T Consensus 23 l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 23 VMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998753
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.12 E-value=0.002 Score=44.69 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++||||||+.+.|...
T Consensus 8 l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998763
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.12 E-value=0.0017 Score=49.44 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|.+-
T Consensus 131 IvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhh
Confidence 5899999999999998864
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.09 E-value=0.0019 Score=49.49 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.|.+-
T Consensus 95 I~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCchHHHHHHHHHhh
Confidence 5899999999999998874
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.09 E-value=0.0012 Score=48.17 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=12.0
Q ss_pred CccCCCCCHHHHHHHHh-cC
Q 040835 1 LIGDSAVGKSQLLARFA-RD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~-~~ 19 (206)
|+|++|||||||++.|. +.
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECSCC----CHHHHHHC--
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 58999999999999998 54
No 312
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.07 E-value=0.056 Score=39.27 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=59.6
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 124 (206)
+.+.|+|+|+.- .......+..+|.+|+++..+ ..++..+..++..+.........+.+|+|+.+... ....
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--- 190 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--- 190 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence 568999998754 224556678899999998875 55667777777777665433456889999998643 2333
Q ss_pred HHHHHHcCCeEEEeccC
Q 040835 125 KEFAEKEGLCFMETSAL 141 (206)
Q Consensus 125 ~~~~~~~~~~~~~~Sa~ 141 (206)
..+.+.++.+++.+-..
T Consensus 191 ~~~~~~~~~~v~~~ip~ 207 (245)
T 3ea0_A 191 DEIEKVIGRPISKRIPQ 207 (245)
T ss_dssp HHHHHHHTSCEEEEECC
T ss_pred HHHHHHhCCCeEEECCC
Confidence 34445567777765333
No 313
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.06 E-value=0.088 Score=40.07 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.4
Q ss_pred ccCCCCCHHHHHHHHhcC
Q 040835 2 IGDSAVGKSQLLARFARD 19 (206)
Q Consensus 2 ~G~~~~GKTtLl~~l~~~ 19 (206)
.|++|+|||++++.+...
T Consensus 54 ~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 54 SPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp CSSTTSSHHHHHHHHHHH
T ss_pred eCcCCCCHHHHHHHHHHH
Confidence 477999999999998753
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.05 E-value=0.002 Score=45.77 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|.+.
T Consensus 30 l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999988764
No 315
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.03 E-value=0.0012 Score=44.82 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|++|+|||+|++.+.+..
T Consensus 41 l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999988743
No 316
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.015 Score=44.59 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|+||+|||++++.++..
T Consensus 50 i~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 50 ITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp EECCCSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4699999999999998864
No 317
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.98 E-value=0.0023 Score=45.44 Aligned_cols=18 Identities=44% Similarity=0.564 Sum_probs=16.3
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 30 l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 30 LTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 318
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.98 E-value=0.0022 Score=48.10 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|++|+|||||++.+.+.
T Consensus 49 L~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 49 LAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EESSTTSCHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5799999999999999873
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.97 E-value=0.0023 Score=44.86 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+++.|..
T Consensus 6 i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999876
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.97 E-value=0.0025 Score=49.73 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 59 IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 59 VIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHhcCC
Confidence 58999999999999988743
No 321
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.96 E-value=0.0025 Score=49.61 Aligned_cols=20 Identities=40% Similarity=0.529 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 46 llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 58999999999999988753
No 322
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.96 E-value=0.0023 Score=49.87 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 35 llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 35 IIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEESTTSSHHHHHHHHHTSS
T ss_pred EECCCCchHHHHHHHHhcCC
Confidence 58999999999999998853
No 323
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.95 E-value=0.0022 Score=48.58 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 69 i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 69 VAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEESTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 5899999999999998874
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.95 E-value=0.0023 Score=49.90 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.+++.
T Consensus 128 I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 128 VTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 5899999999999998763
No 325
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.94 E-value=0.0027 Score=44.45 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|++||||||+++.|..
T Consensus 8 i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999865
No 326
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.91 E-value=0.0027 Score=49.51 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 34 llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 34 LLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EECSTTSSHHHHHHHHHTS
T ss_pred EEcCCCchHHHHHHHHHCC
Confidence 5899999999999998874
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.90 E-value=0.0028 Score=49.50 Aligned_cols=20 Identities=45% Similarity=0.466 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 34 LLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCchHHHHHHHHhcCC
Confidence 58999999999999988853
No 328
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.90 E-value=0.0026 Score=46.91 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.+.+.
T Consensus 54 l~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 54 LVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998874
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.89 E-value=0.0029 Score=45.08 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|.+
T Consensus 7 l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EECSTTSCHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999976
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.89 E-value=0.003 Score=43.78 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|.+|||||||+.+|...
T Consensus 9 i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998863
No 331
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.89 E-value=0.0026 Score=44.64 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.87 E-value=0.0029 Score=49.67 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 34 llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 34 FVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHHcCC
Confidence 58999999999999998843
No 333
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.85 E-value=0.0028 Score=46.64 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+.|||||||++.|.+
T Consensus 30 I~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 30 VSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999876
No 334
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.85 E-value=0.0028 Score=48.31 Aligned_cols=82 Identities=16% Similarity=0.068 Sum_probs=44.2
Q ss_pred EEEEeCCCchhhhh-----h-------hHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 47 AQIWDTAGQERYRA-----V-------TSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 47 ~~i~D~~G~~~~~~-----~-------~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
..++|+.|...... + .+.+....+-+++++|++..- ....+ ..+... .+. .+++++|.|.
T Consensus 186 ~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~----~~~~~~--~g~-t~iiiThlD~ 258 (302)
T 3b9q_A 186 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGI-TGLILTKLDG 258 (302)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCC-CEEEEECCSS
T ss_pred chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH----HHHHHh--cCC-CEEEEeCCCC
Confidence 56789988532211 1 111234566678888876442 22222 222221 123 4567889875
Q ss_pred CcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 114 ETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
.. ..-.....+...+.|+..+.
T Consensus 259 ~~----~~g~~l~~~~~~~~pi~~i~ 280 (302)
T 3b9q_A 259 SA----RGGCVVSVVEELGIPVKFIG 280 (302)
T ss_dssp CS----CTHHHHHHHHHHCCCEEEEE
T ss_pred CC----ccChheehHHHHCCCEEEEe
Confidence 32 34556677777788876554
No 335
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.85 E-value=0.0033 Score=42.65 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.5
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.|+|||||++++.
T Consensus 28 I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 28 IIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 58999999999999976
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.85 E-value=0.0031 Score=44.03 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 9 l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999874
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.85 E-value=0.0029 Score=44.12 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+.|+|||||++++..
T Consensus 31 i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 31 IVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999999865
No 338
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.84 E-value=0.003 Score=49.54 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCcHHHHHHHHHHcCC
Confidence 58999999999999988753
No 339
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.84 E-value=0.0028 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|++|+|||||++.+.+.
T Consensus 56 l~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 56 LAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp EESSTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5799999999999998874
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.84 E-value=0.0029 Score=45.69 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+++.|..
T Consensus 10 i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999998875
No 341
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.83 E-value=0.003 Score=44.74 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=16.3
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+++.|..
T Consensus 5 i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 5 IFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCccCHHHHHHHHHH
Confidence 579999999999998876
No 342
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.83 E-value=0.0032 Score=49.40 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 42 llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCChHHHHHHHHHcC
Confidence 5899999999999998874
No 343
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.81 E-value=0.0028 Score=45.06 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+++.|.+
T Consensus 6 i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 6 LTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 579999999999999887
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.81 E-value=0.0029 Score=48.21 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=46.5
Q ss_pred EEEEEeCCCchhhhh------------hhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 46 KAQIWDTAGQERYRA------------VTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 46 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
.+.++|++|...... +.+.+....+.+++++|+....... ..+..+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc--C-CcEEEEECCcc
Confidence 456889998432111 1112334577788899987654322 2222222211 1 25688999986
Q ss_pred CcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 114 ETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
.. + .-.+.......+.|+..+.
T Consensus 260 ~a-~---gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TA-K---GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SC-C---CTTHHHHHHHHCCCEEEEE
T ss_pred cc-c---ccHHHHHHHHHCCCeEEEe
Confidence 43 1 2234566667788877665
No 345
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.79 E-value=0.0028 Score=48.91 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||++.+.+-.
T Consensus 176 i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 176 VCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp EEESTTSCHHHHHHHGGGGS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999988753
No 346
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.77 E-value=0.0033 Score=43.73 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 48 l~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 48 LIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999988764
No 347
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.74 E-value=0.0031 Score=49.30 Aligned_cols=19 Identities=21% Similarity=0.595 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|.+.
T Consensus 180 ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 180 VAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp EEESSSSCHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 5899999999999999874
No 348
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.72 E-value=0.0034 Score=44.76 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|...
T Consensus 26 i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEESTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998874
No 349
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.72 E-value=0.044 Score=41.99 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++.+...
T Consensus 50 L~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 50 LFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EESSSSSCHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHH
Confidence 4799999999999998874
No 350
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.71 E-value=0.0033 Score=49.36 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.+.+.
T Consensus 141 ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 5899999999999998873
No 351
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.68 E-value=0.0037 Score=46.33 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||.+.|..
T Consensus 6 I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 6 IYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHh
Confidence 589999999999999864
No 352
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.68 E-value=0.004 Score=43.48 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
++|++||||||+.+.|..
T Consensus 10 l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999865
No 353
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.67 E-value=0.0022 Score=48.98 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 85 ivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EESSSCHHHHHHHHHHTTS
T ss_pred EECCCCchHHHHHHHHHcC
Confidence 5899999999999988774
No 354
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.67 E-value=0.0035 Score=49.98 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=17.3
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|||||||++.+++.
T Consensus 172 I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 172 VTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 5899999999999999874
No 355
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.67 E-value=0.0037 Score=45.17 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||+..+...
T Consensus 28 i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5799999999999998853
No 356
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.0014 Score=45.57 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.|.+-
T Consensus 7 IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEESCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999998874
No 357
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.65 E-value=0.0042 Score=43.03 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 9 i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 9 FIGFMGSGKSTLARALAK 26 (175)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 358
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.64 E-value=0.0036 Score=51.21 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.6
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|||||||++.+++--
T Consensus 265 I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp EEESTTSSHHHHHHHHGGGS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 58999999999999998743
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.63 E-value=0.0043 Score=44.19 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=16.3
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+++.|..
T Consensus 9 i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 9 FEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999876
No 360
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.62 E-value=0.003 Score=49.38 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.|.+.
T Consensus 175 IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 175 ILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EECCTTSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5899999999999998874
No 361
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.62 E-value=0.0026 Score=49.47 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 31 llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 31 ILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECCCTHHHHHHHHHHHTSS
T ss_pred EECCCCccHHHHHHHHHcCC
Confidence 58999999999999988743
No 362
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.62 E-value=0.004 Score=46.68 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||++.+.+.
T Consensus 78 l~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 78 LVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCcChHHHHHHHHHHH
Confidence 5799999999999998874
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.61 E-value=0.0044 Score=43.13 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+||||+.+.|..
T Consensus 16 i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 579999999999999874
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.61 E-value=0.0034 Score=47.41 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.3
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||.+.|..
T Consensus 38 l~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 38 LGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EECCTTSCTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999975
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.60 E-value=0.0045 Score=43.42 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.9
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 8 l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998864
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.60 E-value=0.0043 Score=44.48 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999854
No 367
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.59 E-value=0.0038 Score=44.43 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+|||||++.|.+
T Consensus 27 i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998875
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.59 E-value=0.0037 Score=47.71 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|||||||++.|.+.
T Consensus 85 I~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998873
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.57 E-value=0.0045 Score=44.42 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999864
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.57 E-value=0.0044 Score=43.40 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|.+||||||+++.|...
T Consensus 18 l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5799999999999998763
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.54 E-value=0.0048 Score=44.27 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=16.3
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+|||||+|....|..
T Consensus 5 l~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 5 FLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998876
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.50 E-value=0.0046 Score=47.46 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||++.|.+
T Consensus 97 I~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 373
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.49 E-value=0.019 Score=44.03 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 60 l~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 60 FSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHH
Confidence 4799999999999998654
No 374
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.49 E-value=0.0051 Score=43.07 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++||||||+.+.|...
T Consensus 15 l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 15 ITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998764
No 375
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.48 E-value=0.0046 Score=48.82 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.+.+-
T Consensus 52 llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 52 LLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEESTTSSHHHHHHHHHTC
T ss_pred EECCCCChHHHHHHHHhCC
Confidence 5899999999999998873
No 376
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0047 Score=48.21 Aligned_cols=82 Identities=17% Similarity=0.082 Sum_probs=44.8
Q ss_pred EEEEeCCCchhhhh------------hhHhHhcCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Q 040835 47 AQIWDTAGQERYRA------------VTSAYYRGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKSDL 113 (206)
Q Consensus 47 ~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 113 (206)
..++|+.|...... +.+.+....+-+++++|++... ....+ ..+.... +. .+++++|.|.
T Consensus 243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~----~~~~~~~--g~-t~iiiThlD~ 315 (359)
T 2og2_A 243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEVV--GI-TGLILTKLDG 315 (359)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHHT--CC-CEEEEESCTT
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH----HHHHHhc--CC-eEEEEecCcc
Confidence 56889998532211 1112234567778888976432 22222 2222211 22 4677889885
Q ss_pred CcCCCCCHHHHHHHHHHcCCeEEEec
Q 040835 114 ETLRAVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~S 139 (206)
.. ..-.........+.|+..+.
T Consensus 316 ~~----~gG~~lsi~~~~~~pI~~ig 337 (359)
T 2og2_A 316 SA----RGGCVVSVVEELGIPVKFIG 337 (359)
T ss_dssp CS----CTHHHHHHHHHHCCCEEEEE
T ss_pred cc----cccHHHHHHHHhCCCEEEEe
Confidence 32 34455667777788876654
No 377
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.45 E-value=0.016 Score=46.51 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.0
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.++|||+|+|.|+
T Consensus 72 v~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 72 VAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEBTTSSHHHHHHHHH
T ss_pred EECCCCCchhHHHHHHH
Confidence 58999999999999654
No 378
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.43 E-value=0.0051 Score=43.61 Aligned_cols=20 Identities=45% Similarity=0.551 Sum_probs=17.1
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|++|+|||+|+..+....
T Consensus 59 l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 59 LHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999988643
No 379
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.41 E-value=0.0052 Score=44.74 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||+..+...
T Consensus 29 i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5799999999999999874
No 380
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.41 E-value=0.0057 Score=43.36 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 25 l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 381
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.40 E-value=0.0052 Score=44.02 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+|||||+..+..
T Consensus 25 i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999987
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.39 E-value=0.0059 Score=44.14 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+|||||+|....|..
T Consensus 34 llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 34 VLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EECCTTCCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998876
No 383
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.39 E-value=0.0025 Score=49.63 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 36 llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 58999999999999988753
No 384
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.39 E-value=0.0053 Score=44.50 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+++.|..
T Consensus 12 l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 12 IMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999874
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.38 E-value=0.0047 Score=46.67 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||+..+.+..
T Consensus 40 i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 57999999999999988743
No 386
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.38 E-value=0.17 Score=38.23 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=55.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcC-CCCCcEE-EEEeCCCCCcCCCCCH
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHA-DKNIIIM-LVGNKSDLETLRAVPT 121 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i-vv~nK~D~~~~~~~~~ 121 (206)
.+.+.|+|+|+.-... .....+..+|.+|+++..+ ..++..+..++..+.... ..+.+++ +|+|+.+..
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~------- 226 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT------- 226 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------
Confidence 3678999998753222 1234568899999998764 445666666666666542 2455654 899999831
Q ss_pred HHHHHHHHHcCCeEEE
Q 040835 122 EDAKEFAEKEGLCFME 137 (206)
Q Consensus 122 ~~~~~~~~~~~~~~~~ 137 (206)
.....+.+.++.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 3466667777777654
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.37 E-value=0.0059 Score=45.36 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 9 l~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 9 LTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 388
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.37 E-value=0.0054 Score=45.28 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|++|+|||+|++.+.+.
T Consensus 50 l~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 50 MVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHH
Confidence 4799999999999998764
No 389
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.36 E-value=0.0055 Score=43.07 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 14 l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998864
No 390
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.36 E-value=0.052 Score=40.00 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=42.6
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHH---hcCCCCCcEE-EEEeCCCCC
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELR---GHADKNIIIM-LVGNKSDLE 114 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~p~i-vv~nK~D~~ 114 (206)
.+.+.|+|+|+.-.. .....+..+|.+|+++..+. .++..+..++..+. ...+.+.+++ +|+|+.|..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 367899999985332 23445567999999998764 33444444433333 2223456764 899999853
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.35 E-value=0.0061 Score=43.15 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|.+||||||+++.|...
T Consensus 9 l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EECCTTSSHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5799999999999998874
No 392
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.34 E-value=0.0061 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 9 l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 9 LIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.33 E-value=0.0061 Score=42.72 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 5 l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999876
No 394
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.33 E-value=0.0029 Score=46.15 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|+|||||++.+.+-..
T Consensus 32 i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcccc
Confidence 579999999999999887433
No 395
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.33 E-value=0.0062 Score=42.84 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|.+||||||+++.|...
T Consensus 5 l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998763
No 396
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.33 E-value=0.0061 Score=41.94 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELAR 24 (173)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 397
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.32 E-value=0.0057 Score=44.30 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 57 l~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 57 LWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998763
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.31 E-value=0.0059 Score=43.03 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 17 l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 17 IIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998875
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.30 E-value=0.0061 Score=42.34 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+++.|..
T Consensus 10 l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 10 LTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998876
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.29 E-value=0.0037 Score=47.93 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|..|||||||++.|.+..
T Consensus 9 i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEESSSSSCHHHHHHHHHSC
T ss_pred EEecCCCCHHHHHHHHHhhc
Confidence 57999999999999999753
No 401
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.28 E-value=0.0041 Score=43.06 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 48 l~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 48 LLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EESCGGGCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999988764
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.27 E-value=0.006 Score=44.03 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 10 l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 10 ISGAPASGKGTQCELIKT 27 (222)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 403
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.27 E-value=0.006 Score=43.49 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+++.|..
T Consensus 15 l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.26 E-value=0.0047 Score=44.98 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|+.|||||||++.|.+.
T Consensus 25 i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EECSTTSCHHHHHHTTGGG
T ss_pred EECCCCCCHHHHHHHHHhc
Confidence 5799999999999998875
No 405
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.26 E-value=0.0064 Score=47.55 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=15.7
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.|+|||||+++++
T Consensus 28 i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 28 VEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 58999999999999977
No 406
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.25 E-value=0.0068 Score=42.26 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 7 l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 7 LVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 407
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.22 E-value=0.0022 Score=45.92 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+++.|..
T Consensus 5 i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 5 IEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.22 E-value=0.0069 Score=41.49 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EESCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999876
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.21 E-value=0.007 Score=42.90 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 20 l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999998874
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.21 E-value=0.0071 Score=43.77 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|++||||||+++.|..
T Consensus 5 l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999865
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.19 E-value=0.0072 Score=44.66 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.9
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|++|||||||++.|.
T Consensus 32 I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 57999999999999988
No 412
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.18 E-value=0.0068 Score=45.88 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.9
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||++.|..
T Consensus 36 I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998765
No 413
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.17 E-value=0.0067 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 11 l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.16 E-value=0.0067 Score=43.52 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 5 l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 5 LLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999865
No 415
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.15 E-value=0.0068 Score=43.26 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+++.|..
T Consensus 14 l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.13 E-value=0.0077 Score=44.24 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 34 l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 34 FLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 417
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.11 E-value=0.0094 Score=44.20 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++.+...
T Consensus 49 l~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 49 LVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CBCSSCSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5799999999999998864
No 418
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.0063 Score=49.11 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|+.|+|||||++.|.+-
T Consensus 143 IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 143 IVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp EEESTTSSHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 5899999999999998874
No 419
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.04 E-value=0.005 Score=42.82 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=12.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 10 l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EECCC----CHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999864
No 420
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.03 E-value=0.0078 Score=49.59 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.|.+..
T Consensus 30 LiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 30 VLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 58999999999999998853
No 421
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.00 E-value=0.0045 Score=45.79 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++||||||+.+.|..
T Consensus 37 l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 37 LGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EESCGGGTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 422
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.97 E-value=0.0085 Score=42.90 Aligned_cols=18 Identities=44% Similarity=0.510 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+|+||||+++.|..
T Consensus 30 ~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.95 E-value=0.009 Score=49.24 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+..
T Consensus 52 LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 52 IVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999998854
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.95 E-value=0.0084 Score=43.19 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 50 l~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 50 FSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EECSTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998753
No 425
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.94 E-value=0.0096 Score=42.49 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.3
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.|+|||||++++.
T Consensus 28 I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 28 IIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 57999999999999875
No 426
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.92 E-value=0.0079 Score=46.71 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.9
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+..
T Consensus 76 IiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 76 IFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEECTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999864
No 427
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.92 E-value=0.0062 Score=43.59 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.7
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
+.|+||+|||+++.++..
T Consensus 63 i~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 63 FCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EESCGGGCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999888766
No 428
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.91 E-value=0.0096 Score=40.84 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 12 l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EESCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 429
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.90 E-value=0.0087 Score=47.00 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+|||||++.+.+
T Consensus 174 l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 174 FKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 579999999999999886
No 430
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.89 E-value=0.0092 Score=43.47 Aligned_cols=19 Identities=16% Similarity=0.337 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++||||||+++.|...
T Consensus 31 i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 4799999999999998764
No 431
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.88 E-value=0.0088 Score=44.78 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 56 l~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 56 LYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EESSSSSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 4799999999999998764
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.88 E-value=0.0092 Score=42.94 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 10 l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 433
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.88 E-value=0.009 Score=48.43 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+.|+|||||++.+.+
T Consensus 34 liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 34 LSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 589999999999999886
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.0098 Score=49.69 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.|.+-.
T Consensus 108 LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 108 LVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCChHHHHHHHHhcCC
Confidence 58999999999999998853
No 435
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.84 E-value=0.009 Score=45.03 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++.+...
T Consensus 59 l~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 59 LFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp EESSSSSCHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHH
Confidence 4799999999999998863
No 436
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.81 E-value=0.0093 Score=45.64 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 42 l~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 42 IYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 4799999999999998763
No 437
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.79 E-value=0.01 Score=43.74 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 44 l~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 44 LLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EESCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998763
No 438
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.77 E-value=0.01 Score=43.91 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+||||+.+.|..
T Consensus 53 l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 53 LVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp EECSTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999998865
No 439
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.76 E-value=0.011 Score=44.67 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 7 l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 7 TIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999886
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.75 E-value=0.011 Score=42.95 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+||||||+.+.|..
T Consensus 21 l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998875
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.75 E-value=0.0092 Score=44.69 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+|||||+..+..
T Consensus 35 i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999886
No 442
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.75 E-value=0.011 Score=42.50 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+++.|..
T Consensus 9 i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 9 LTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999875
No 443
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.70 E-value=0.11 Score=38.25 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=52.8
Q ss_pred eEEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEE-EEEeCCCCCcC----C
Q 040835 43 KNVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIM-LVGNKSDLETL----R 117 (206)
Q Consensus 43 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~----~ 117 (206)
..+.+.|+|+|+.-.........+..+|.+|++...+. .+...+...+..+.. .+.+++ +|+|+.|.... +
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~ 202 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEE---TNTSVLGLVENMSYFVCPNCGHK 202 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHT---TTCCEEEEEETTCCEECTTTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHh---CCCCEEEEEECCCccCCcccccc
Confidence 34678999999853221111222336899999987763 344555555555554 246666 89999884210 1
Q ss_pred -CC-CHHHHHHHHHHcCCeEEE
Q 040835 118 -AV-PTEDAKEFAEKEGLCFME 137 (206)
Q Consensus 118 -~~-~~~~~~~~~~~~~~~~~~ 137 (206)
.. .......+.+.++.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~~~ 224 (262)
T 2ph1_A 203 SYIFGEGKGESLAKKYNIGFFT 224 (262)
T ss_dssp ECTTCCCCHHHHHHHTTCSEEE
T ss_pred cccccccHHHHHHHHcCCCeEE
Confidence 01 112345666677887664
No 444
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.69 E-value=0.0099 Score=44.97 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|+||+|||+|++.+...
T Consensus 41 l~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 41 IWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEECTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 3599999999999998864
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.65 E-value=0.011 Score=44.89 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++.+...
T Consensus 54 L~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 54 FYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHH
Confidence 4799999999999998864
No 446
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.63 E-value=0.012 Score=41.62 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|.+||||||+.+.|...
T Consensus 13 i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEECTTSCHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHC
Confidence 5799999999999998875
No 447
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.61 E-value=0.011 Score=49.31 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 122 LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 122 IVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCChHHHHHHHHhCCC
Confidence 58999999999999988754
No 448
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.60 E-value=0.013 Score=39.33 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=17.2
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
+.|++|+|||+|.+.+....
T Consensus 29 l~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 29 LYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EESSTTSSHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 47999999999999987643
No 449
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.58 E-value=0.011 Score=46.03 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||||+..+....
T Consensus 136 I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999998753
No 450
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.58 E-value=0.012 Score=42.86 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||||+..+...
T Consensus 28 i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999998877653
No 451
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.56 E-value=0.012 Score=45.47 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.4
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|.|++|+||||+++.+...-
T Consensus 51 l~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 51 FYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999988753
No 452
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.52 E-value=0.011 Score=44.78 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=49.4
Q ss_pred EEEEEEEeCCCchhhhhh----hHhHhc--CCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCC
Q 040835 44 NVKAQIWDTAGQERYRAV----TSAYYR--GAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLR 117 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 117 (206)
...+.|+||+|....... ....+. ..+.+++|+|.+.. ...+..+...+.. .+ ..-+|+||.|...
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~-- 253 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT-- 253 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS--
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc--
Confidence 356899999996543211 112232 36778889987643 2333333332221 12 2356679999753
Q ss_pred CCCHHHHHHHHHHcCCeEEEec
Q 040835 118 AVPTEDAKEFAEKEGLCFMETS 139 (206)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~S 139 (206)
....+.......++|+..+.
T Consensus 254 --~~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 254 --SLGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CCHHHHHHHHTCSCCCSEEC
T ss_pred --chhHHHHHHHHHCcCEEEEE
Confidence 23366677778888876554
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.45 E-value=0.014 Score=48.78 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|+|||||++.|.+-..
T Consensus 387 i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999988543
No 454
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.43 E-value=0.012 Score=45.70 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||||++.+...
T Consensus 50 i~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EEECTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998863
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.014 Score=48.15 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=18.1
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|+|||||++.+.+-..
T Consensus 299 i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 299 ILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSSC
T ss_pred EECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999988533
No 456
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.41 E-value=0.014 Score=48.50 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=17.5
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
++|+.|+|||||++.+.+-.
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 374 LVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 58999999999999988743
No 457
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.41 E-value=0.015 Score=44.98 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.4
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.|+|||||+++++
T Consensus 28 i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 28 IIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 58999999999999874
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.39 E-value=0.015 Score=47.94 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.9
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+-.
T Consensus 317 i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 317 IVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999854
No 459
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.37 E-value=0.013 Score=48.77 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 374 ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 374 LVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEECTTSSHHHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHhhc
Confidence 5899999999999988774
No 460
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.32 E-value=0.013 Score=46.94 Aligned_cols=20 Identities=50% Similarity=0.581 Sum_probs=17.8
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|+.|+|||||++.+.+..
T Consensus 162 IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 58999999999999988853
No 461
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.32 E-value=0.017 Score=42.26 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.9
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|++|+||||+.+.|..
T Consensus 14 i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 14 VDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999998874
No 462
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.32 E-value=0.015 Score=43.90 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 55 l~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 55 MIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998763
No 463
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.29 E-value=0.014 Score=44.19 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|++|+|||+|++.+..
T Consensus 72 l~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 72 FTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999986655
No 464
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.26 E-value=0.016 Score=44.21 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=48.8
Q ss_pred EEEEEEeCCCchhhhhh-------hHhHh-----cCCcEEEEEeeCCChh-hHHHHHHHHHHHHhcCCCCCcEEEEEeCC
Q 040835 45 VKAQIWDTAGQERYRAV-------TSAYY-----RGAVGAMLVYDITKRQ-SFDNVARWLEELRGHADKNIIIMLVGNKS 111 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~-------~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 111 (206)
..+.|+||||....... ....+ ...+.+++|+|.+... .+..++ .+.... + ..-+|+||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~----~~~~~~--~-i~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAK----IFKEAV--N-VTGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHH----HHHHHS--C-CCEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHH----HHHhcC--C-CCEEEEeCC
Confidence 45889999995221110 11111 2478889999987432 222222 222211 2 245678999
Q ss_pred CCCcCCCCCHHHHHHHHHHcCCeEEEecc
Q 040835 112 DLETLRAVPTEDAKEFAEKEGLCFMETSA 140 (206)
Q Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 140 (206)
|... ..-.+..+....++|+.++..
T Consensus 260 D~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 260 DGTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GGCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred CCcc----chHHHHHHHHHHCCCEEEEeC
Confidence 9643 233477888888999877654
No 465
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.25 E-value=0.016 Score=46.15 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++||||||+.++|...
T Consensus 263 l~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 263 AVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EESCTTSSHHHHHHHHTGG
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999998763
No 466
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.25 E-value=0.016 Score=43.20 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++.+...
T Consensus 69 l~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 69 LEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 4799999999999998874
No 467
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.21 E-value=0.017 Score=44.99 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 49 l~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 49 LYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp ECBCTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998863
No 468
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.19 E-value=0.018 Score=41.92 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+|||||||+...|..
T Consensus 13 ~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHH
Confidence 589999999999998865
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.19 E-value=0.017 Score=40.83 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.6
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|.+||||||+.+.|...
T Consensus 17 ltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999988764
No 470
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.08 E-value=0.019 Score=48.02 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.2
Q ss_pred CccCCCCCHHHHHHHHhcCCC
Q 040835 1 LIGDSAVGKSQLLARFARDEF 21 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~~ 21 (206)
|+|+.|+|||||++.+.+-..
T Consensus 383 iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 383 MMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EESCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999988543
No 471
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.08 E-value=0.018 Score=42.40 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 27 I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998865
No 472
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.06 E-value=0.018 Score=43.61 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||+|++.+...
T Consensus 52 l~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 52 FLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EESCSSSSHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHH
Confidence 5799999999999998774
No 473
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.03 E-value=0.019 Score=40.68 Aligned_cols=18 Identities=44% Similarity=0.506 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 7 i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 7 IDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 479999999999999865
No 474
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.01 E-value=0.35 Score=34.77 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=52.4
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 124 (206)
+.+.|+|+|+... ......+..+|.+|+++..+ ..++..+...+..+.... ...+.+|+|+.+..... .. .
T Consensus 112 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~~---~ 182 (237)
T 1g3q_A 112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRSDRD-IP---P 182 (237)
T ss_dssp CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSCTTC-CC---H
T ss_pred CCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcccch-hH---H
Confidence 5688999987533 33456778899999998775 445566666666665541 24467899999864322 22 2
Q ss_pred HHHHHHcCCeEE
Q 040835 125 KEFAEKEGLCFM 136 (206)
Q Consensus 125 ~~~~~~~~~~~~ 136 (206)
..+.+..+.+++
T Consensus 183 ~~~~~~~~~~~~ 194 (237)
T 1g3q_A 183 EAAEDVMEVPLL 194 (237)
T ss_dssp HHHHHHHCSCEE
T ss_pred HHHHHHhCccce
Confidence 333444566654
No 475
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.98 E-value=0.019 Score=43.80 Aligned_cols=19 Identities=53% Similarity=0.775 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|+.++...
T Consensus 157 l~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 157 LYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999988763
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.98 E-value=0.019 Score=44.27 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++.+...
T Consensus 63 l~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 63 FYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998764
No 477
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.96 E-value=0.018 Score=43.27 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|.|.+||||||+.+.|..
T Consensus 80 I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 80 LTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEECTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999999873
No 478
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=93.93 E-value=0.07 Score=39.13 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=46.5
Q ss_pred EEEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCC------CCCcEEEEEeCCCC
Q 040835 44 NVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHAD------KNIIIMLVGNKSDL 113 (206)
Q Consensus 44 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~ 113 (206)
.+.+.|+|+|+.-. ......+..+|.+|+++..+ ..++..+..++..+..... ....+.+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 46789999997533 34566777899999998864 4556666666666654321 22567899999985
No 479
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.89 E-value=0.026 Score=44.43 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 57 i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 57 SIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CTTCCSSSHHHHHHHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHH
Confidence 4799999999999998763
No 480
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.85 E-value=0.02 Score=45.98 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+.+.
T Consensus 135 l~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 135 IYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998763
No 481
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.021 Score=45.59 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|+||+|||+|++++.+.
T Consensus 211 L~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 211 LYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EESCTTTTHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4699999999999998863
No 482
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.83 E-value=0.013 Score=48.88 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 375 ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 375 LVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EECCTTSSSTHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5899999999999988874
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.83 E-value=0.02 Score=43.81 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|++|+|||+|++++...
T Consensus 56 l~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 56 LYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EECSSSSCHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 4799999999999998764
No 484
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.79 E-value=0.18 Score=37.21 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=45.4
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCC
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSD 112 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 112 (206)
+.+.|+|+|+.- .......+..+|.+|+++..+. .+...+..++..+.... .+.++.+|+|+.+
T Consensus 145 yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN-LFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred CCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence 568999998754 2334566777999999998853 45566666666666543 4567889999994
No 485
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.79 E-value=0.012 Score=48.82 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=16.5
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 372 ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 372 FVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EECSTTSSHHHHHTTTTTS
T ss_pred EECCCCChHHHHHHHHhcC
Confidence 5899999999999977763
No 486
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.75 E-value=0.015 Score=48.60 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=16.9
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 386 ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 386 LVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EECCTTSSTTHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 5899999999999988774
No 487
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.023 Score=45.42 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|+||+|||.|++++.+.
T Consensus 220 LyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 220 MYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EESCTTSSHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHH
Confidence 4699999999999998873
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.67 E-value=0.021 Score=44.36 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|.|++|+|||+|++.+...
T Consensus 75 l~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 75 IAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4799999999999998764
No 489
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.67 E-value=0.024 Score=40.36 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=17.7
Q ss_pred CccCCCCCHHHHHHHHhcCC
Q 040835 1 LIGDSAVGKSQLLARFARDE 20 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~~ 20 (206)
|+|++|+|||+|...|....
T Consensus 39 I~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 39 ITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EECCCTTTTHHHHHHHHTTT
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 57999999999999998754
No 490
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.65 E-value=0.015 Score=44.50 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=16.0
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|+.|+|||+|++++.
T Consensus 29 i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 29 IVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EECCTTTCSTHHHHHHH
T ss_pred EECCCCCcHHHHHHHHH
Confidence 58999999999999987
No 491
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.64 E-value=0.026 Score=43.31 Aligned_cols=18 Identities=39% Similarity=0.634 Sum_probs=16.3
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||...|..
T Consensus 10 i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 10 LMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EECCTTSCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999998876
No 492
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.63 E-value=0.023 Score=45.01 Aligned_cols=18 Identities=44% Similarity=0.547 Sum_probs=15.8
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|+|||||+..|+.
T Consensus 183 I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 183 LFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EEcCCCCChHHHHHHHHH
Confidence 579999999999998764
No 493
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.62 E-value=0.026 Score=44.01 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.4
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|+.|+|||||++.+..
T Consensus 31 i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 31 IYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCChhHHHHHHHH
Confidence 589999999999999874
No 494
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.61 E-value=0.023 Score=46.68 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=0.0
Q ss_pred CccCCCCCHHHHHHHHh
Q 040835 1 LIGDSAVGKSQLLARFA 17 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~ 17 (206)
|+|++|+|||||++.|+
T Consensus 44 l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 44 VSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
No 495
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.55 E-value=0.017 Score=48.07 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.7
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
++|+.|+|||||++.+.+-
T Consensus 374 ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EECSSSSSHHHHHHTTTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5899999999999987763
No 496
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.52 E-value=0.3 Score=35.78 Aligned_cols=83 Identities=10% Similarity=-0.047 Sum_probs=52.8
Q ss_pred EEEEEEeCCCchhhhhhhHhHhcCCcEEEEEeeCCChhhHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCcCCCCCHHHH
Q 040835 45 VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDNVARWLEELRGHADKNIIIMLVGNKSDLETLRAVPTEDA 124 (206)
Q Consensus 45 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 124 (206)
+.+.|+|+|+... ......+..+|.+|+++..+ ..+...+..++..+.... ...+.+|+|+.|... .....
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~----~~~~~ 181 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLG----IEMAK 181 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTT----HHHHH
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCccc----ccchH
Confidence 5689999997533 33455677899999988764 345556666666655541 245668999998542 11345
Q ss_pred HHHHHHcCCeEE
Q 040835 125 KEFAEKEGLCFM 136 (206)
Q Consensus 125 ~~~~~~~~~~~~ 136 (206)
..+.+..+.+++
T Consensus 182 ~~~~~~~~~~~~ 193 (263)
T 1hyq_A 182 NEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHTTSCEE
T ss_pred HHHHHHhCCCeE
Confidence 555666676654
No 497
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.51 E-value=0.027 Score=43.46 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=16.2
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|++|||||||...|..
T Consensus 12 I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 12 IVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCcCcHHHHHHHHHH
Confidence 579999999999998875
No 498
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.026 Score=45.18 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.8
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
+.|+||+|||+|++++.+.
T Consensus 220 L~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 220 LYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EESCTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 4699999999999998873
No 499
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.49 E-value=0.026 Score=41.05 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.1
Q ss_pred CccCCCCCHHHHHHHHhc
Q 040835 1 LIGDSAVGKSQLLARFAR 18 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~ 18 (206)
|+|.+|+||||+.+.|..
T Consensus 21 i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 21 IDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EECSSCSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999998875
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.46 E-value=0.025 Score=46.10 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.0
Q ss_pred CccCCCCCHHHHHHHHhcC
Q 040835 1 LIGDSAVGKSQLLARFARD 19 (206)
Q Consensus 1 v~G~~~~GKTtLl~~l~~~ 19 (206)
|+|++|+|||+|++.+.+.
T Consensus 69 L~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 69 LVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EECSSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999998874
Done!