BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040836
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 186/725 (25%), Positives = 303/725 (41%), Gaps = 146/725 (20%)
Query: 23 ERAKDLVERMTLPEKVQQMGDLA-------------------YGVPRLGLPLYEWWSEAL 63
E+ +++ ++TL EKV+ + + + VPR+GLP + +
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF------V 55
Query: 64 HGVSFIGRRTNSPPGTHFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNL 123
G R N P D T+FP I+ +++N L +++G+ + E R Y +
Sbjct: 56 LADGPAGLRIN--PTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 124 GNAGLTFWSPNINVVRDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSR 183
+P +N+ R+P GR E EDP + G A ++V+G+Q +GV
Sbjct: 113 D----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQS-QGV--------- 158
Query: 184 PLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSY 243
AC KH+ A +N E N R D+ V+E+ ++E ++ FE+ V + SVM +Y
Sbjct: 159 ----GACIKHFVA---NNQETN-RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAY 210
Query: 244 NRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKA 303
N++NG + LL + +R +W F G+++SD + VE K ND A +
Sbjct: 211 NKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPVEQLKAGNDLIMPGKAYQVNT 270
Query: 304 GLDLDCGDYYTNFTMGAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQYKNLGKNNIC 363
+ + M A+++GK++E +D +R + VL+ +P +KN +N
Sbjct: 271 ERRDEIEE-----IMEALKEGKLSEEVLDECVRNILKVLV------NAPSFKNYRYSNKP 319
Query: 364 N-PQHIELAAEAARQGIVLLKNDNGALPLN---------TGNIKTL-ALVGPHANATKAM 412
+ +H ++A EA +G+VLL+N+ ALPL+ TG I+T+ G +
Sbjct: 320 DLEKHAKVAYEAGAEGVVLLRNEE-ALPLSENSKIALFGTGQIETIKGGTGSGDTHPRYA 378
Query: 413 IGNYEGTPCR--------------YTSPMDGFYAYS-KVINYAPGCADIVCQNNSMIPXX 457
I EG R Y M Y + ++ + +N
Sbjct: 379 ISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEI 438
Query: 458 XXXXXXXXXTVIVAGLDLSVEAEGKDRV----DLLLPGFQTELINKVADA--AKGPVTLV 511
VIV + EG DR D L +T+LI V+ +G +V
Sbjct: 439 HKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIV 495
Query: 512 IMSAGAVDINFAKNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITWYEANYVK 571
+++ G+ + + IL V G+E GR +ADV+ G+ NP G+LP T + +Y
Sbjct: 496 LLNIGS-PVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDYSD 553
Query: 572 IPYTSMPLRPVNN----------FPG-RTYKFFDGPVVYPFGYGLSYTQFKYKVASSPKS 620
+P + P P +N + G R Y F Y FGYGLSYT F+Y
Sbjct: 554 VPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFEYS------- 606
Query: 621 VDIKLDKDQQCRDINYTVGTNKPPCAAVLIDDVKCKDYKFTFQIEVENMGKMDGSEVVMV 680
D+ + D + + Y +EN G G EV V
Sbjct: 607 -DLNVSFDGETLRVQY----------------------------RIENTGGRAGKEVSQV 637
Query: 681 YSKPP 685
Y K P
Sbjct: 638 YIKAP 642
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 185/725 (25%), Positives = 302/725 (41%), Gaps = 146/725 (20%)
Query: 23 ERAKDLVERMTLPEKVQQMGDLA-------------------YGVPRLGLPLYEWWSEAL 63
E+ +++ ++TL EKV+ + + + VPR+GLP + +
Sbjct: 2 EKVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF------V 55
Query: 64 HGVSFIGRRTNSPPGTHFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNL 123
G R N P D T+FP I+ +++N L +++G+ + E R Y +
Sbjct: 56 LADGPAGLRIN--PTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGV 112
Query: 124 GNAGLTFWSPNINVVRDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSR 183
+P +N+ R+P GR E EDP + G A ++V+G+Q +GV
Sbjct: 113 D----VLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQS-QGV--------- 158
Query: 184 PLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSY 243
AC KH+ A +N E N R D+ V+E+ ++E ++ FE+ V + SVM +Y
Sbjct: 159 ----GACIKHFVA---NNQETN-RMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAY 210
Query: 244 NRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKA 303
N++NG + LL + +R +W F G+++S + VE K ND A +
Sbjct: 211 NKLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYAGDNPVEQLKAGNDLIMPGKAYQVNT 270
Query: 304 GLDLDCGDYYTNFTMGAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQYKNLGKNNIC 363
+ + M A+++GK++E +D +R + VL+ +P +KN +N
Sbjct: 271 ERRDEIEE-----IMEALKEGKLSEEVLDECVRNILKVLV------NAPSFKNYRYSNKP 319
Query: 364 N-PQHIELAAEAARQGIVLLKNDNGALPLN---------TGNIKTL-ALVGPHANATKAM 412
+ +H ++A EA +G+VLL+N+ ALPL+ TG I+T+ G +
Sbjct: 320 DLEKHAKVAYEAGAEGVVLLRNEE-ALPLSENSKIALFGTGQIETIKGGTGSGDTHPRYA 378
Query: 413 IGNYEGTPCR--------------YTSPMDGFYAYS-KVINYAPGCADIVCQNNSMIPXX 457
I EG R Y M Y + ++ + +N
Sbjct: 379 ISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKEI 438
Query: 458 XXXXXXXXXTVIVAGLDLSVEAEGKDRV----DLLLPGFQTELINKVADA--AKGPVTLV 511
VIV + EG DR D L +T+LI V+ +G +V
Sbjct: 439 HKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIV 495
Query: 512 IMSAGAVDINFAKNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITWYEANYVK 571
+++ G+ + + IL V G+E GR +ADV+ G+ NP G+LP T + +Y
Sbjct: 496 LLNIGS-PVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDYSD 553
Query: 572 IPYTSMPLRPVNN----------FPG-RTYKFFDGPVVYPFGYGLSYTQFKYKVASSPKS 620
+P + P P +N + G R Y F Y FGYGLSYT F+Y
Sbjct: 554 VPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFEYS------- 606
Query: 621 VDIKLDKDQQCRDINYTVGTNKPPCAAVLIDDVKCKDYKFTFQIEVENMGKMDGSEVVMV 680
D+ + D + + Y +EN G G EV V
Sbjct: 607 -DLNVSFDGETLRVQY----------------------------RIENTGGRAGKEVSQV 637
Query: 681 YSKPP 685
Y K P
Sbjct: 638 YIKAP 642
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 136 bits (342), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/447 (26%), Positives = 193/447 (43%), Gaps = 99/447 (22%)
Query: 21 YPERAKDLVERMTLPEKV-----------QQMGDLAYGVPRLGLPLYEWWSEALHGVSFI 69
Y RA +LV +MTL EK+ Q +G L GVPRLG+P ++ +G+ +
Sbjct: 50 YTSRAAELVAQMTLDEKISFVHWALDPDRQNVGYLP-GVPRLGIPELRA-ADGPNGIRLV 107
Query: 70 GRRTNSPPGTHFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLT 129
G+ AT+ P + ++F++++ G+ + + RA+ N +
Sbjct: 108 GQT---------------ATALPAPVALASTFDDTMADSYGKVMGRDGRAL----NQDMV 148
Query: 130 FWSPNINVVRDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISA 189
P +N +R P GR ET EDP V R A+ ++G+Q +
Sbjct: 149 L-GPMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGA--------------GLMT 193
Query: 190 CCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGI 249
KH+AA N + N+RF ++ V EQ ++E FE G +S MC+YN +NG
Sbjct: 194 TAKHFAA----NNQENNRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGK 248
Query: 250 PTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDC 309
P+C + +LLN +R W F G+++SD +L DA+ + GLD +
Sbjct: 249 PSCGNDELLNNVLRTQWGFQGWVMSD------------WLATPGTDAITK----GLDQEM 292
Query: 310 G----------------DYYTNFTMGAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQ 353
G ++ AV G + EA + S + + + G +P
Sbjct: 293 GVELPGDVPKGEPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPA 352
Query: 354 YKNLGKNNICNPQHIELAAEA-----ARQGIVLLKNDNGALPLNTGNIKTLALVGPHANA 408
+ P+ + A+A A G VLL+N+ ALPL K++A++GP A
Sbjct: 353 PR---------PERDKAGAQAVSRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVD 403
Query: 409 TKAM-IGNYEGTPCRYTSPMDGFYAYS 434
K +G+ P +P+D A +
Sbjct: 404 PKVTGLGSAHVVPDSAAAPLDTIKARA 430
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 125/281 (44%), Gaps = 64/281 (22%)
Query: 480 EGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDINFAKNNPKIKSILWVGYPG 539
EG DR +L LPG Q +LI+ VADA P T+V+++ G+ + + K +++L + YPG
Sbjct: 579 EGVDRPNLSLPGTQDKLISAVADA--NPNTIVVLNTGSSVLMPWLS--KTRAVLDMWYPG 634
Query: 540 EEGGRAIADVIFGKYNPGGRLPITWYEA---NYVKIPYTSMPLRPVNNFPGRT------Y 590
+ G A A +++G NP G+L ++ A + V TS P V+N Y
Sbjct: 635 QAGAEATAALLYGDVNPSGKLTQSFPAAENQHAVAGDPTSYP--GVDNQQTYREGIHVGY 692
Query: 591 KFFDGPVV---YPFGYGLSYTQFKYKVASSPKSVDIKLDKDQQCRDINYTVGTNKPPCAA 647
++FD V +PFG+GLSYT F T P
Sbjct: 693 RWFDKENVKPLFPFGHGLSYTSF-----------------------------TQSAPTV- 722
Query: 648 VLIDDVKCKDYKFTFQIEVENMGKMDGSEVVMVY--SKPPGIAGTHIKQVIGYERVFIAA 705
V+ + V N GK G EVV Y + P A K+++GY +V +AA
Sbjct: 723 -----VRTSTGGLKVTVTVRNSGKRAGQEVVQAYLGASPNVTAPQAKKKLVGYTKVSLAA 777
Query: 706 GQSAKVGFTMNACKSLKIVDNA--------ANSLLASGAHT 738
G++ V ++ + L+ D A N LL +G+ +
Sbjct: 778 GEAKTVTVNVD-RRQLQFWDAATDNWKTGTGNRLLQTGSSS 817
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 176/708 (24%), Positives = 285/708 (40%), Gaps = 132/708 (18%)
Query: 87 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTFWSPNINVV-------- 138
G+T+F + ++++ +L ++ GQ + E +A I+V+
Sbjct: 71 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKAS-------------GIHVILGPVAGPL 117
Query: 139 -RDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAY 197
+ P+ GR E G DPY+ G + G+Q V + A KHY
Sbjct: 118 GKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSV--------------GVQATAKHY--- 160
Query: 198 DLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKL 257
+ N + +R S ++ + E + PF V + +V+SVMCSYN+VN C D
Sbjct: 161 -ILNEQELNRETISSNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYT 218
Query: 258 LNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDC--GDYYTN 315
L ++ F GY+++D ++ T V+S +GLD+ D+ N
Sbjct: 219 LQTVLKDQLGFPGYVMTDWNAQHTTVQS---------------ANSGLDMSMPGTDFNGN 263
Query: 316 FTM------GAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQ--YKNLGKNNICNPQH 367
+ AV ++ + +D + ++ Y G Q Y + + H
Sbjct: 264 NRLWGPALTNAVNSNQVPTSRVDD----MVTRILAAWYLTGQDQAGYPSFNISRNVQGNH 319
Query: 368 IELAAEAARQGIVLLKNDNGALPLNTGNIKTLALVGPHANATKAMIGNY-EGTP-CRYTS 425
AR GIVLLKND LPL ++A+VG + A+IGN+ +P C
Sbjct: 320 KTNVRAIARDGIVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKG 372
Query: 426 PMDGFYAY---SKVINY----APGCA----------DIVCQNNSMIPXXXXXXXXXXXTV 468
DG S +NY AP A + N +
Sbjct: 373 CDDGALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAI 432
Query: 469 IVAGLD-----LSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDINFA 523
+ D ++VE DR +L L+ VA A V +V+ S GA+ +
Sbjct: 433 VFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVA-GANSNVIVVVHSVGAIILEQI 491
Query: 524 KNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITWYEA-NYVKIPYTSMPLRPV 582
P++K+++W G P +E G A+ DV++G +P G+L T ++ N S
Sbjct: 492 LALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSF 551
Query: 583 NNFPGRTYKFFDGPVVYP---FGYGLSYTQFKY---KVASSPKSVDIKLDKDQQCRDINY 636
+ YK FD + P FGYGLSYT+F Y V S+ KS
Sbjct: 552 SEGLFIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKS--------------GP 597
Query: 637 TVGTNKPPCAAVLIDDVKCKDYKFTFQIEVENMGKMDGSEVVMVY-SKPPGIAGTHIKQV 695
G P + L +V T +++ N G++ G+EV +Y + P T KQ+
Sbjct: 598 ATGAVVPGGPSDLFQNVA------TVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQL 651
Query: 696 IGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANS-LLASGAHTILVG 742
G+ ++ + GQS F + + L D A+ ++ SG+ I VG
Sbjct: 652 RGFAKLNLTPGQSGTATFNIRR-RDLSYWDTASQKWVVPSGSFGISVG 698
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 176/708 (24%), Positives = 285/708 (40%), Gaps = 132/708 (18%)
Query: 87 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTFWSPNINVV-------- 138
G+T+F + ++++ +L ++ GQ + E +A I+V+
Sbjct: 72 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKAS-------------GIHVILGPVAGPL 118
Query: 139 -RDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAY 197
+ P+ GR E G DPY+ G + G+Q V + A KHY
Sbjct: 119 GKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSV--------------GVQATAKHY--- 161
Query: 198 DLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKL 257
+ N + +R S ++ + E + PF V + +V+SVMCSYN+VN C D
Sbjct: 162 -ILNEQELNRETISSNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYT 219
Query: 258 LNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDC--GDYYTN 315
L ++ F GY+++D ++ T V+S +GLD+ D+ N
Sbjct: 220 LQTVLKDQLGFPGYVMTDWNAQHTTVQS---------------ANSGLDMSMPGTDFNGN 264
Query: 316 FTM------GAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQ--YKNLGKNNICNPQH 367
+ AV ++ + +D + ++ Y G Q Y + + H
Sbjct: 265 NRLWGPALTNAVNSNQVPTSRVDD----MVTRILAAWYLTGQDQAGYPSFNISRNVQGNH 320
Query: 368 IELAAEAARQGIVLLKNDNGALPLNTGNIKTLALVGPHANATKAMIGNY-EGTP-CRYTS 425
AR GIVLLKND LPL ++A+VG + A+IGN+ +P C
Sbjct: 321 KTNVRAIARDGIVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKG 373
Query: 426 PMDGFYAY---SKVINY----APGCA----------DIVCQNNSMIPXXXXXXXXXXXTV 468
DG S +NY AP A + N +
Sbjct: 374 CDDGALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAI 433
Query: 469 IVAGLD-----LSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDINFA 523
+ D ++VE DR +L L+ VA A V +V+ S GA+ +
Sbjct: 434 VFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVA-GANSNVIVVVHSVGAIILEQI 492
Query: 524 KNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITWYEA-NYVKIPYTSMPLRPV 582
P++K+++W G P +E G A+ DV++G +P G+L T ++ N S
Sbjct: 493 LALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSF 552
Query: 583 NNFPGRTYKFFDGPVVYP---FGYGLSYTQFKY---KVASSPKSVDIKLDKDQQCRDINY 636
+ YK FD + P FGYGLSYT+F Y V S+ KS
Sbjct: 553 SEGLFIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKS--------------GP 598
Query: 637 TVGTNKPPCAAVLIDDVKCKDYKFTFQIEVENMGKMDGSEVVMVY-SKPPGIAGTHIKQV 695
G P + L +V T +++ N G++ G+EV +Y + P T KQ+
Sbjct: 599 ATGAVVPGGPSDLFQNVA------TVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQL 652
Query: 696 IGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANS-LLASGAHTILVG 742
G+ ++ + GQS F + + L D A+ ++ SG+ I VG
Sbjct: 653 RGFAKLNLTPGQSGTATFNIRR-RDLSYWDTASQKWVVPSGSFGISVG 699
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 145/552 (26%), Positives = 236/552 (42%), Gaps = 76/552 (13%)
Query: 80 HFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVV 138
H S V GAT FP I A+ + L K+IGQ + E A G+ + ++P + VV
Sbjct: 113 HGHSNVYGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA------TGIEWSFAPTVAVV 166
Query: 139 RDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYD 198
RD RWGR E+ EDP +V RYA V G+Q G ++ + S+ A KH+ D
Sbjct: 167 RDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNR-----IATAKHFVG-D 220
Query: 199 LDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLL 258
G DR ++ + E+ +++ + +N+G V SVM S+N NG D LL
Sbjct: 221 GGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLL 277
Query: 259 NQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDL----DCGDYYT 314
++ F G++VSD + +HKF+ + A+ + AG+D+ + + +
Sbjct: 278 TDVLKNQLGFDGFVVSDWN-------AHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFY 330
Query: 315 NFTMGAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQYKNLGKNNICNPQ------HI 368
+ T+ V+ G IAE+ I+ ++R +R G F S K + +PQ H
Sbjct: 331 HNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKS---KPSARPESQHPQWLGAAEHR 387
Query: 369 ELAAEAARQGIVLLKNDNGALPLNTGNIKTLALVGPHANATKAMIGNYEGTPCRYTSPMD 428
LA EA R+ +VLLKN+ LP+ + + + G ANA G G + +
Sbjct: 388 TLAREAVRKSLVLLKNNESILPIKASS--RILVAGKGANAINMQAG---GWSVSWQGTDN 442
Query: 429 GFYAYSKVINYAPGCADIVCQNNSMIPXXXXXXXXXXXTVIVAGLDLSVEAEGKDRVDLL 488
+ + G V + I V + + AE ++LL
Sbjct: 443 TNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELL 502
Query: 489 LPGFQTELINKVA-----DAAKGPVTLVIMSAGAVDINFAKNNPKIKSILWVGYPGEEGG 543
FQ E + +A A PV V +S + +N N W+ PG E G
Sbjct: 503 --EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL--PGSE-G 557
Query: 544 RAIADVIF------GKYNPGGRLPITW--YEANYVKIPYTSMPLRPVNNFPGRTYKFFDG 595
+ADV+ +++ G+L +W Y+ + ++ L + P
Sbjct: 558 EGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQF------TLNLNDADYDP--------- 602
Query: 596 PVVYPFGYGLSY 607
++ +GYGL+Y
Sbjct: 603 --LFAYGYGLTY 612
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 159/603 (26%), Positives = 254/603 (42%), Gaps = 82/603 (13%)
Query: 14 YCDAKLPYPERAKDLVERMTLPEKVQQM------------------GDLAYG---VPRLG 52
Y DA P +R DL+ RMTL EK+ QM G L G VPR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 53 LPLYEWWSEALHGV--SFIGRRTNSP-----PGTHFDSEVPGATSFPTVILTTASFNESL 105
EW + + G + + R P H + V GAT FP + A+ + L
Sbjct: 65 ATAKEW-QDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 106 WKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVVRDPRWGRVLETPGEDPYVVGRYAINY 164
K+IG+ + E RA G+ + ++P I V RDPRWGR E+ ED +V +
Sbjct: 124 VKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QSMTEL 176
Query: 165 VRGLQ-DV-----EGVEYHRDSDSRPLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQD 218
+ GLQ DV G+ + + K++AC KH+ D + ++ + +
Sbjct: 177 IPGLQGDVPKDFTSGMPFVAGKN----KVAACAKHFVG---DGGTVDGINENNTIINREG 229
Query: 219 MQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDS 278
+ + ++ +++G VS+VM SY+ NG+ A+ L+ ++ F G+++SD +
Sbjct: 230 LMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEG 288
Query: 279 IQTIVESHKFLNDTKEDAVARVLKAGLDL----DCGDYYTNFTMGAVQQGKIAEADIDTS 334
I I +D A +L AGLD+ + + + G V G I + ID +
Sbjct: 289 IDRITTPAG--SDYSYSVKASIL-AGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDA 345
Query: 335 LRFLYIVLMRLGYFDGSPQYKNLGKNNICNPQHIELAAEAARQGIVLLKN-----DNGAL 389
+ + V +G F+ +P + +H +LA EAAR+ +VLLKN D L
Sbjct: 346 VTRILRVKFTMGLFE-NPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLL 404
Query: 390 PLNTGNIKTLALVGPHANATKAMIG----NYEGTPCRYTSPMDGFYAYSKVINYAPGCAD 445
PL K L + G HA+ G ++G R T A ++ P
Sbjct: 405 PLPKKAPKIL-VAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVD--PSTVV 461
Query: 446 IVCQNNSMIPXXXXXXXXXXXTVIVA-GLDLSVEAEGKDRVDLLLPGFQTELINKVADAA 504
+ +N P IVA G E +G D ++L +P + V
Sbjct: 462 VFAEN----PDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGV 516
Query: 505 KGPVTLVIMSAGAVDINFAKNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITW 564
+ L+ V A ++ + + L PG E G+ + D +FG + GRLP TW
Sbjct: 517 RCATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRTW 571
Query: 565 YEA 567
+++
Sbjct: 572 FKS 574
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 146/559 (26%), Positives = 238/559 (42%), Gaps = 90/559 (16%)
Query: 80 HFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVV 138
H S V GAT FP I A+ + L K+IGQ + E A G+ + ++P + VV
Sbjct: 113 HGHSNVYGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA------TGIEWSFAPTVAVV 166
Query: 139 RDPRWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYD 198
RD RWGR E+ EDP +V RYA V G+Q G ++ + S+ A KH+ D
Sbjct: 167 RDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNR-----IATAKHFVG-D 220
Query: 199 LDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLL 258
G DR ++ + E+ +++ + +N+G V SVM S+N NG D LL
Sbjct: 221 GGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDKHLL 277
Query: 259 NQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDL----DCGDYYT 314
++ F G++VSD + +HKF+ + A+ + AG+D+ + + +
Sbjct: 278 TDVLKNQLGFDGFVVSDWN-------AHKFVEGCDLEQCAQAINAGVDVIMVPEHFEAFY 330
Query: 315 NFTMGAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQYKNLGKNNICNPQ------HI 368
+ T+ V+ G IAE+ I+ ++R +R G F S K + +PQ H
Sbjct: 331 HNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKS---KPSARPESQHPQWLGAAEHR 387
Query: 369 ELAAEAARQGIVLLKNDNGALPLNTGNIKTLALVGPHANATKAMIGNY-------EGTPC 421
LA EA R+ +VLLKN+ LP+ + + + G ANA G + + T
Sbjct: 388 TLAREAVRKSLVLLKNNESILPIKASS--RILVAGKGANAINMQAGGWSVSWQGTDNTNS 445
Query: 422 RYTSPMDGFYAYSKVINYAPGCADIVCQNNSMIPXXXXXXXXXXXTVIVAGLDLSVEAEG 481
+ + F + A G + ++V G + E G
Sbjct: 446 DFPNATSIFSGLQSQVTKAGG--------KITLSESGEYTSKPDVAIVVIGEEPYAEWFG 497
Query: 482 KDRVDLLLPGFQTELINKVA-----DAAKGPVTLVIMSAGAVDINFAKNNPKIKSILWVG 536
D+ L FQ E + +A A PV V +S + +N N W+
Sbjct: 498 ----DIELLEFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAWL- 552
Query: 537 YPGEEGGRAIADVIF------GKYNPGGRLPITW--YEANYVKIPYTSMPLRPVNNFPGR 588
PG E G +ADV+ +++ G+L +W Y+ + ++ L + P
Sbjct: 553 -PGSE-GEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQF------TLNLNDADYDP-- 602
Query: 589 TYKFFDGPVVYPFGYGLSY 607
++ +GYGL+Y
Sbjct: 603 ---------LFAYGYGLTY 612
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 159/603 (26%), Positives = 254/603 (42%), Gaps = 82/603 (13%)
Query: 14 YCDAKLPYPERAKDLVERMTLPEKVQQM------------------GDLAYG---VPRLG 52
Y DA P +R DL+ RMTL EK+ QM G L G VPR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 53 LPLYEWWSEALHGV--SFIGRRTNSP-----PGTHFDSEVPGATSFPTVILTTASFNESL 105
EW + + G + + R P H + V GAT FP + A+ + L
Sbjct: 65 ATAKEW-QDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 106 WKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVVRDPRWGRVLETPGEDPYVVGRYAINY 164
K+IG+ + E RA G+ + ++P I V RDPRWGR E+ ED +V +
Sbjct: 124 VKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QSMTEL 176
Query: 165 VRGLQ-DV-----EGVEYHRDSDSRPLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQD 218
+ GLQ DV G+ + + K++AC KH+ D + ++ + +
Sbjct: 177 IPGLQGDVPKDFTSGMPFVAGKN----KVAACAKHFVG---DGGTVDGINENNTIINREG 229
Query: 219 MQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDS 278
+ + ++ +++G VS+VM SY+ NG+ A+ L+ ++ F G+++SD +
Sbjct: 230 LMNIHMPAYKNAMDKG-VSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEG 288
Query: 279 IQTIVESHKFLNDTKEDAVARVLKAGLDL----DCGDYYTNFTMGAVQQGKIAEADIDTS 334
I I +D A +L AGLD+ + + + G V G I + ID +
Sbjct: 289 IDRITTPAG--SDYSYSVKASIL-AGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDA 345
Query: 335 LRFLYIVLMRLGYFDGSPQYKNLGKNNICNPQHIELAAEAARQGIVLLKN-----DNGAL 389
+ + V +G F+ +P + +H +LA EAAR+ +VLLKN D L
Sbjct: 346 VTRILRVKFTMGLFE-NPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLL 404
Query: 390 PLNTGNIKTLALVGPHANATKAMIG----NYEGTPCRYTSPMDGFYAYSKVINYAPGCAD 445
PL K L + G HA+ G ++G R T A ++ P
Sbjct: 405 PLPKKAPKIL-VAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVD--PSTVV 461
Query: 446 IVCQNNSMIPXXXXXXXXXXXTVIVA-GLDLSVEAEGKDRVDLLLPGFQTELINKVADAA 504
+ +N P IVA G E +G D ++L +P + V
Sbjct: 462 VFAEN----PDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGV 516
Query: 505 KGPVTLVIMSAGAVDINFAKNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITW 564
+ L+ V A ++ + + L PG E G+ + D +FG + GRLP TW
Sbjct: 517 RCATVLISGRPVVVQPLLAASDALVAAWL----PGSE-GQGVTDALFGDFGFTGRLPRTW 571
Query: 565 YEA 567
+++
Sbjct: 572 FKS 574
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 110/436 (25%), Positives = 179/436 (41%), Gaps = 75/436 (17%)
Query: 26 KDLVERMTLPEKVQQMGDLAY----GVPRLGLPLYEWWSEALHGVSFIGRRTNSPPGTHF 81
+ L+ + EK+ + + + + RLG+P + N GT F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR-----------VSDGPNGIRGTKF 55
Query: 82 DSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTFWSPNINVVRDP 141
VP FP ++F+ L + G+ ++ E+ A NA + P N+ R P
Sbjct: 56 FDGVPSGC-FPNGTGLASTFDRDLLETAGKLMAKESIAK----NAAVIL-GPTTNMQRGP 109
Query: 142 RWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYDLDN 201
GR E+ EDPY+ G + V+G+Q EG I+A KH+ DL++
Sbjct: 110 LGGRGFESFSEDPYLAGMATSSVVKGMQG-EG-------------IAATVKHFVCNDLED 155
Query: 202 WEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQT 261
RF +S V+E+ ++E ++ PF + V + +M +YN+VNG KLL
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDI 211
Query: 262 IRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDYYTNFTMGAV 321
+R +W + G ++SD T A +K GLD++ T V
Sbjct: 212 LRDEWKWDGMLMSDWFGTYT---------------TAAAIKNGLDIEFPGPTRWRTRALV 256
Query: 322 QQG-----KIAEADIDTSLR-------FLYIVLMRLGYFDGSPQYKNLGKNNICNPQHIE 369
+I D+D +R F+ L + G + P+ + NN + +
Sbjct: 257 SHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTS---NN--TKETSD 311
Query: 370 LAAEAARQGIVLLKNDNGALPLNTGNIKTLALVGPHANATKAMIGNYEGTPCRY-TSPMD 428
L + A IVLLKN N LPL + + ++GP+A A + G Y SP +
Sbjct: 312 LLRKIAADSIVLLKNKNNILPLKKED--NIIVIGPNAKAKTSSGGGSASMNSYYVVSPYE 369
Query: 429 GFY-AYSKVINYAPGC 443
G K ++Y G
Sbjct: 370 GIVNKLGKEVDYTVGA 385
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 116/258 (44%), Gaps = 51/258 (19%)
Query: 468 VIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGA-VDINFAKNN 526
V++ GL+ E EG DR ++ LP EL+ V A P T+++ +G V+ + ++
Sbjct: 578 VLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKA--NPNTVIVNQSGTPVEFPWLED- 634
Query: 527 PKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITW---YEANYVKIPYTSMPLRPV- 582
+++ Y G E G AIADV++G P G+L ++W + N + + + R +
Sbjct: 635 --ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIY 692
Query: 583 --NNFPG-RTYKFFDGPVVYPFGYGLSYTQFKYKVASSPKSVDIKLDKDQQCRDINYTVG 639
+ F G R Y+ V +PFGYGLSYT F +LD
Sbjct: 693 GEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF-------------ELD------------- 726
Query: 640 TNKPPCAAVLIDDVKCKDYKFTFQIEVENMG-KMDGSEVVMVY-SKPPGIAGTHIKQVIG 697
I D K D K ++V+N G K GSEVV VY S +K++ G
Sbjct: 727 ----------ISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKG 776
Query: 698 YERVFIAAGQSAKVGFTM 715
+E+V + G+ V +
Sbjct: 777 FEKVHLEPGEKKTVNIDL 794
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 101/399 (25%), Positives = 162/399 (40%), Gaps = 73/399 (18%)
Query: 26 KDLVERMTLPEKVQQMGDLAY----GVPRLGLPLYEWWSEALHGVSFIGRRTNSPPGTHF 81
+ L+ + EK+ + + + + RLG+P + N GT F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVR-----------VSDGPNGIRGTKF 55
Query: 82 DSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTFWSPNINVVRDP 141
VP FP ++F+ L + G+ + E+ A NA + P N R P
Sbjct: 56 FDGVPSGC-FPNGTGLASTFDRDLLETAGKLXAKESIAK----NAAVIL-GPTTNXQRGP 109
Query: 142 RWGRVLETPGEDPYVVGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYDLDN 201
GR E+ EDPY+ G + V+G Q EG I+A KH+ DL++
Sbjct: 110 LGGRGFESFSEDPYLAGXATSSVVKGXQG-EG-------------IAATVKHFVCNDLED 155
Query: 202 WEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQT 261
RF +S V+E+ ++E ++ PF + V + + +YN+VNG KLL
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDI 211
Query: 262 IRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDYYTNFTMGAV 321
+R +W + G + SD T A +K GLD++ T V
Sbjct: 212 LRDEWKWDGXLXSDWFGTYT---------------TAAAIKNGLDIEFPGPTRWRTRALV 256
Query: 322 QQG-----KIAEADIDTSLR-------FLYIVLMRLGYFDGSPQYKNLGKNNICNPQHIE 369
+I D+D +R F+ L + G + P+ + NN + +
Sbjct: 257 SHSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTS---NN--TKETSD 311
Query: 370 LAAEAARQGIVLLKNDNGALPLNTGNIKTLALVGPHANA 408
L + A IVLLKN N LPL + + ++GP+A A
Sbjct: 312 LLRKIAADSIVLLKNKNNILPLKKED--NIIVIGPNAKA 348
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 115/258 (44%), Gaps = 51/258 (19%)
Query: 468 VIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGA-VDINFAKNN 526
V++ GL+ E EG DR + LP EL+ V A P T+++ +G V+ + ++
Sbjct: 578 VLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLKA--NPNTVIVNQSGTPVEFPWLED- 634
Query: 527 PKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITW---YEANYVKIPYTSMPLRPV- 582
+++ Y G E G AIADV++G P G+L ++W + N + + + R +
Sbjct: 635 --ANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIY 692
Query: 583 --NNFPG-RTYKFFDGPVVYPFGYGLSYTQFKYKVASSPKSVDIKLDKDQQCRDINYTVG 639
+ F G R Y+ V +PFGYGLSYT F +LD
Sbjct: 693 GEDIFVGYRYYEKLQRKVAFPFGYGLSYTTF-------------ELD------------- 726
Query: 640 TNKPPCAAVLIDDVKCKDYKFTFQIEVENMG-KMDGSEVVMVY-SKPPGIAGTHIKQVIG 697
I D K D K ++V+N G K GSEVV VY S +K++ G
Sbjct: 727 ----------ISDFKVTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKG 776
Query: 698 YERVFIAAGQSAKVGFTM 715
+E+V + G+ V +
Sbjct: 777 FEKVHLEPGEKKTVNIDL 794
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 110/260 (42%), Gaps = 41/260 (15%)
Query: 187 ISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSY--- 243
I++ KH+ + + + + S E+ ++E + PF+ ++ G VM ++
Sbjct: 216 IASALKHFPGHGDTDVDSHYGLPLVSHGQER-LREVELYPFQKAIDAG-ADMVMTAHVQF 273
Query: 244 ---------NRVNG----IPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLN 290
++++G +P K++ +R + F+G IV+D +++ I +
Sbjct: 274 PAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHF---- 329
Query: 291 DTKEDAVARVLKAGLD----------LDCGDYYTNFTMG---AVQQGKIAEADIDTSLRF 337
+E+AV +KAG+D L + AV+ G I E I+ S+
Sbjct: 330 -GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVER 388
Query: 338 LYIVLMRLGYF-----DGSPQYKNLGKNNICNPQHIELAAEAARQGIVLLKNDNGALPLN 392
+ + ++ G + D + + K + + QH++ + A + + +LKN+ LP
Sbjct: 389 IISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFK 448
Query: 393 TGNIKTLALVGPHANATKAM 412
+ +V P+ T ++
Sbjct: 449 PKKGSRILIVAPYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 110/260 (42%), Gaps = 41/260 (15%)
Query: 187 ISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSY--- 243
I++ KH+ + + + + S E+ ++E + PF+ ++ G VM ++
Sbjct: 220 IASALKHFPGHGDTDVDSHYGLPLVSHGQER-LREVELYPFQKAIDAG-ADMVMTAHVQF 277
Query: 244 ---------NRVNG----IPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLN 290
++++G +P K++ +R + F+G IV++ +++ I +
Sbjct: 278 PAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHF---- 333
Query: 291 DTKEDAVARVLKAGLD----------LDCGDYYTNFTMG---AVQQGKIAEADIDTSLRF 337
+E+AV +KAG+D L + AV+ G I E I+ S+
Sbjct: 334 -GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVER 392
Query: 338 LYIVLMRLGYF-----DGSPQYKNLGKNNICNPQHIELAAEAARQGIVLLKNDNGALPLN 392
+ + ++ G + D + + K + + QH++ + A + + +LKN+ LP
Sbjct: 393 IISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFK 452
Query: 393 TGNIKTLALVGPHANATKAM 412
+ +V P+ T ++
Sbjct: 453 PKKGSRILIVAPYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 47/263 (17%)
Query: 187 ISACCKHYAAY---DLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSY 243
I++ KH+ + D+D+ G S E+ ++E + PF+ ++ G VM ++
Sbjct: 190 IASALKHFPGHGDTDVDSHYG---LPLVSHGQER-LREVELYPFQKAIDAG-ADMVMTAH 244
Query: 244 ------------NRVNG----IPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHK 287
++++G +P K++ +R + F+G IV++ +++ I +
Sbjct: 245 VQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHF- 303
Query: 288 FLNDTKEDAVARVLKAGLD----------LDCGDYYTNFTMG---AVQQGKIAEADIDTS 334
+E+AV +KAG+D L + AV+ G I E I+ S
Sbjct: 304 ----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNS 359
Query: 335 LRFLYIVLMRLGYF-----DGSPQYKNLGKNNICNPQHIELAAEAARQGIVLLKNDNGAL 389
+ + + ++ G + D + + K + + QH++ + A + + +LKN+ L
Sbjct: 360 VERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTL 419
Query: 390 PLNTGNIKTLALVGPHANATKAM 412
P + +V P+ T ++
Sbjct: 420 PFKPKKGSRILIVAPYEEQTASI 442
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 187 ISACCKHYAAYDLDNWEGNDRFHFDSRV-------TEQDMQETFILPFEMCVNEGD-VSS 238
++ C KH+ G+ H DS + + ++ + PF + E + +
Sbjct: 173 VAPCAKHF--------PGHGDTHQDSHLALPRVSKSRAELDAGELAPFRALLPETPAIXT 224
Query: 239 VMCSYNRVNG-IPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAV 297
Y+ ++ P P++L +R +W + G IV+D Q I N + +A
Sbjct: 225 AHIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVTDSXGXQAI-----DANYGRGEAA 279
Query: 298 ARVLKAGLDL 307
R L+AG DL
Sbjct: 280 VRALRAGADL 289
>pdb|3TY1|A Chain A, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
pdb|3TY1|B Chain B, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
pdb|3TY1|C Chain C, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
Length = 384
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 651 DDVKCKDYKFTFQIEVENMGKMDGSEVVMVYSK 683
D +K KD+ F+ + +V + GK +GS+++ ++SK
Sbjct: 24 DQLKVKDHAFSIEQKVLHGGKQEGSKILTIHSK 56
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 556 PGGRLPITWYEANYVKIPYTSMPLRPVNNFPGRTYKFFDGPVVYPFGYGLSYTQFKYKVA 615
PG + TWY Y I TSM V+ + + + P LS TQ + +
Sbjct: 230 PGSSVYSTWYNGGYNTISGTSMATPHVSGLAAKIWA--ENP-------SLSNTQLRSNLQ 280
Query: 616 SSPKSVDIK 624
KSVDIK
Sbjct: 281 ERAKSVDIK 289
>pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
pdb|3O38|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
pdb|3O38|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
pdb|3O38|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Smegmatis
Length = 266
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 102 NESLWKKIGQTVSTEARAMYNLGNAGLTFWSPNINVVRDPRWGRVLETPGEDPYVVGRYA 161
E++ I QTV R + NAGL +P +++ D W RVL R A
Sbjct: 85 TEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMT-DEEWDRVLNVTLTSVMRATRAA 143
Query: 162 INYVRGL 168
+ Y RG+
Sbjct: 144 LRYFRGV 150
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 556 PGGRLPITWYEANYVKIPYTSMPLRPVNNFPGRTYKFFDGPVVYPFGYGLSYTQFKYKVA 615
PG + TWY Y I T M V+ + + + P LS TQ + +
Sbjct: 230 PGSSVYSTWYNGGYNTISGTXMATPHVSGLAAKIWA--ENP-------SLSNTQLRSNLQ 280
Query: 616 SSPKSVDIK 624
KSVDIK
Sbjct: 281 ERAKSVDIK 289
>pdb|3IK2|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 44
Endoglucanase Produced By Clostridium Acetobutylium Atcc
824
Length = 517
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 20/88 (22%)
Query: 527 PKIKSILWVGYPGEE---------------GGRAIADV--IFGKYNPGGRLPITWYEANY 569
PK+KS + YPG + GG A AD +FGKY G T++E N
Sbjct: 333 PKVKSSIDKYYPGTKLSFSEYNYGGEDHISGGIAQADALGVFGKY---GVYFATYWECNS 389
Query: 570 VKIPYTSMPLRPVNNFPGRTYKFFDGPV 597
K Y NN+ G K+ D V
Sbjct: 390 DKNNYVQSAFNLYNNYDGNNSKYGDTDV 417
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 496 LINKVADAAKGPVTLVIMSAGAVDINFAKNNPKIKSILW-VGYPGEEGGRA 545
L++ + KG V V AG + + FA+++PKI+ L V P E RA
Sbjct: 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,950,347
Number of Sequences: 62578
Number of extensions: 1066008
Number of successful extensions: 2313
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2232
Number of HSP's gapped (non-prelim): 47
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)