Query 040836
Match_columns 758
No_of_seqs 363 out of 1920
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 3E-164 7E-169 1445.8 69.5 732 8-751 36-778 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 2E-142 4E-147 1266.0 65.4 675 18-755 31-763 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 5.2E-64 1.1E-68 551.3 24.9 288 87-417 79-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 1E-59 2.2E-64 505.0 18.3 225 88-341 69-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 6.2E-47 1.3E-51 408.7 22.0 223 87-345 74-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 9.2E-40 2E-44 337.6 13.4 216 379-609 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 1.3E-20 2.7E-25 158.2 6.3 69 676-745 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.7 0.0048 1E-07 54.6 7.2 63 657-742 18-82 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.8 0.035 7.5E-07 47.3 7.3 67 657-742 4-74 (78)
10 PF12690 BsuPI: Intracellular 94.1 0.25 5.5E-06 42.5 7.8 67 660-740 2-81 (82)
11 COG0486 ThdF Predicted GTPase 91.8 3.5 7.5E-05 46.6 14.4 96 230-345 60-171 (454)
12 PF14874 PapD-like: Flagellar- 90.3 2 4.4E-05 38.1 9.1 76 658-739 20-95 (102)
13 COG1470 Predicted membrane pro 87.0 2.2 4.7E-05 47.8 8.1 75 658-746 284-361 (513)
14 PRK13202 ureB urease subunit b 86.5 1.3 2.7E-05 39.4 4.8 51 660-714 21-83 (104)
15 PRK13203 ureB urease subunit b 86.3 1.3 2.9E-05 39.2 4.8 51 660-714 20-82 (102)
16 PF13473 Cupredoxin_1: Cupredo 84.6 2.4 5.2E-05 38.0 5.9 51 661-743 44-94 (104)
17 cd00407 Urease_beta Urease bet 84.2 1.9 4.2E-05 38.2 4.9 51 660-714 20-82 (101)
18 TIGR00192 urease_beta urease, 83.5 2.1 4.6E-05 37.9 4.8 51 660-714 20-82 (101)
19 PF00699 Urease_beta: Urease b 79.7 3.7 8.1E-05 36.3 5.0 52 659-714 18-81 (100)
20 PRK13201 ureB urease subunit b 79.6 3.4 7.3E-05 38.4 4.8 51 660-714 20-82 (136)
21 PRK13205 ureB urease subunit b 79.0 3.4 7.4E-05 39.2 4.8 51 660-714 20-82 (162)
22 PF06030 DUF916: Bacterial pro 78.7 7.1 0.00015 36.3 6.9 58 658-717 27-103 (121)
23 PRK13204 ureB urease subunit b 78.3 3.7 8E-05 39.1 4.8 51 660-714 43-105 (159)
24 PRK13198 ureB urease subunit b 76.9 4.3 9.3E-05 38.6 4.8 51 660-714 48-110 (158)
25 COG0832 UreB Urea amidohydrola 75.8 3.9 8.4E-05 36.1 3.9 51 660-714 20-82 (106)
26 PRK13192 bifunctional urease s 70.9 6.5 0.00014 39.3 4.7 51 660-714 129-191 (208)
27 COG1470 Predicted membrane pro 70.7 20 0.00043 40.5 8.9 70 657-743 396-467 (513)
28 PF05506 DUF756: Domain of unk 70.6 18 0.0004 31.3 7.1 46 661-717 21-67 (89)
29 PF07385 DUF1498: Protein of u 69.5 5.8 0.00012 40.4 4.1 64 665-743 111-185 (225)
30 PRK13986 urease subunit alpha; 67.8 8.1 0.00018 39.1 4.7 51 660-714 125-187 (225)
31 PF09624 DUF2393: Protein of u 66.6 20 0.00043 34.4 7.1 60 658-717 62-133 (149)
32 PF00345 PapD_N: Pili and flag 65.5 13 0.00028 34.2 5.4 54 661-717 17-73 (122)
33 PF00927 Transglut_C: Transglu 64.6 14 0.0003 33.2 5.3 59 658-718 15-77 (107)
34 PF06280 DUF1034: Fn3-like dom 62.2 12 0.00025 34.1 4.4 60 658-717 8-80 (112)
35 PF10087 DUF2325: Uncharacteri 62.0 50 0.0011 29.1 8.3 40 457-511 42-81 (97)
36 PF14796 AP3B1_C: Clathrin-ada 54.6 28 0.00062 33.4 5.7 54 659-717 86-140 (145)
37 TIGR00450 mnmE_trmE_thdF tRNA 54.4 1.1E+02 0.0024 35.0 11.5 43 231-275 51-98 (442)
38 TIGR01759 MalateDH-SF1 malate 53.5 11 0.00023 41.3 3.0 59 458-520 74-134 (323)
39 cd03708 GTPBP_III Domain III o 52.8 91 0.002 26.5 8.2 74 659-742 5-82 (87)
40 PF07610 DUF1573: Protein of u 52.4 29 0.00063 26.1 4.3 43 663-714 1-44 (45)
41 PF04744 Monooxygenase_B: Mono 51.7 41 0.00088 37.0 6.9 55 657-716 262-334 (381)
42 PF14016 DUF4232: Protein of u 49.3 44 0.00095 31.2 6.1 59 659-717 19-82 (131)
43 TIGR02695 azurin azurin. Azuri 46.3 48 0.001 30.9 5.5 53 661-717 26-99 (125)
44 TIGR01756 LDH_protist lactate 46.1 14 0.0003 40.3 2.4 57 459-521 56-116 (313)
45 PF07233 DUF1425: Protein of u 45.6 1.3E+02 0.0029 26.4 8.2 58 658-717 24-82 (94)
46 COG1160 Predicted GTPases [Gen 44.6 55 0.0012 37.1 6.8 47 455-514 75-121 (444)
47 PRK05291 trmE tRNA modificatio 44.2 1.9E+02 0.0042 33.1 11.4 35 230-265 58-97 (449)
48 TIGR03096 nitroso_cyanin nitro 43.2 57 0.0012 30.9 5.7 27 702-744 95-121 (135)
49 PRK13533 7-cyano-7-deazaguanin 43.0 32 0.0007 39.7 4.9 47 262-310 75-121 (487)
50 TIGR01451 B_ant_repeat conserv 42.9 33 0.00072 26.8 3.5 21 657-677 11-31 (53)
51 PF05753 TRAP_beta: Translocon 41.7 1.5E+02 0.0033 29.5 8.8 84 657-745 37-127 (181)
52 COG1361 S-layer domain [Cell e 40.3 71 0.0015 37.1 7.3 59 658-717 167-226 (500)
53 COG0039 Mdh Malate/lactate deh 40.1 24 0.00052 38.3 3.0 58 459-521 65-124 (313)
54 PF01345 DUF11: Domain of unkn 39.9 34 0.00074 28.5 3.4 21 657-677 40-60 (76)
55 cd09030 DUF1425 Putative perip 39.3 2.2E+02 0.0047 25.3 8.7 58 658-717 32-90 (101)
56 PLN02303 urease 38.5 38 0.00083 41.4 4.6 50 661-714 151-212 (837)
57 PF00056 Ldh_1_N: lactate/mala 38.5 8.1 0.00017 36.8 -0.8 54 460-520 66-123 (141)
58 cd01338 MDH_choloroplast_like 38.4 25 0.00054 38.5 2.9 57 458-520 73-133 (322)
59 cd00938 HisRS_RNA HisRS_RNA bi 38.1 65 0.0014 24.5 4.1 30 317-346 13-42 (45)
60 PRK05442 malate dehydrogenase; 36.7 23 0.0005 38.8 2.4 57 459-521 76-136 (326)
61 PLN00135 malate dehydrogenase 36.7 28 0.0006 37.9 2.9 55 459-520 54-113 (309)
62 PF03896 TRAP_alpha: Transloco 35.5 2.2E+02 0.0047 30.6 9.3 59 658-719 99-162 (285)
63 cd00704 MDH Malate dehydrogena 35.3 30 0.00064 37.9 2.9 57 458-520 71-131 (323)
64 TIGR01757 Malate-DH_plant mala 34.3 23 0.0005 39.7 1.8 57 459-521 116-176 (387)
65 PF06205 GT36_AF: Glycosyltran 33.6 29 0.00062 30.4 2.0 19 699-717 66-84 (90)
66 TIGR03079 CH4_NH3mon_ox_B meth 32.3 97 0.0021 34.1 6.0 55 657-716 281-353 (399)
67 cd00300 LDH_like L-lactate deh 31.8 30 0.00065 37.3 2.2 57 459-520 62-120 (300)
68 PRK09918 putative fimbrial cha 30.8 1.3E+02 0.0029 31.1 6.7 51 661-716 41-93 (230)
69 PRK10737 FKBP-type peptidyl-pr 30.5 93 0.002 31.5 5.3 65 658-727 7-74 (196)
70 PF06858 NOG1: Nucleolar GTP-b 30.4 1.5E+02 0.0032 23.9 5.3 41 464-513 14-55 (58)
71 cd06557 KPHMT-like Ketopantoat 30.2 3.5E+02 0.0077 28.5 9.8 18 263-280 28-45 (254)
72 PRK05848 nicotinate-nucleotide 29.9 2.6E+02 0.0057 29.8 8.9 40 256-311 170-209 (273)
73 cd01336 MDH_cytoplasmic_cytoso 29.4 42 0.00092 36.7 2.9 58 459-520 74-133 (325)
74 TIGR01758 MDH_euk_cyt malate d 29.3 41 0.00089 36.8 2.8 56 459-520 71-130 (324)
75 PF00703 Glyco_hydro_2: Glycos 28.9 2.2E+02 0.0048 24.6 7.1 63 658-726 18-81 (110)
76 TIGR01772 MDH_euk_gproteo mala 28.9 54 0.0012 35.7 3.6 55 459-520 63-121 (312)
77 cd01337 MDH_glyoxysomal_mitoch 28.3 43 0.00094 36.4 2.7 55 459-520 64-122 (310)
78 PF11611 DUF4352: Domain of un 28.3 90 0.002 28.2 4.5 60 658-717 36-101 (123)
79 PRK06096 molybdenum transport 28.1 4.3E+02 0.0093 28.4 10.1 31 157-197 106-136 (284)
80 cd01857 HSR1_MMR1 HSR1/MMR1. 27.7 1.3E+02 0.0028 28.1 5.7 18 455-472 3-20 (141)
81 PLN00112 malate dehydrogenase 27.6 34 0.00073 39.1 1.8 56 459-521 172-232 (444)
82 TIGR00237 xseA exodeoxyribonuc 26.7 2.2E+02 0.0048 32.5 8.1 56 454-521 175-233 (432)
83 PRK00286 xseA exodeoxyribonucl 26.6 2.2E+02 0.0047 32.5 8.1 57 453-521 180-238 (438)
84 PF09851 SHOCT: Short C-termin 26.5 1.1E+02 0.0025 21.0 3.6 25 315-339 6-30 (31)
85 PF07495 Y_Y_Y: Y_Y_Y domain; 26.4 33 0.0007 27.5 1.0 34 695-743 14-47 (66)
86 PRK13534 7-cyano-7-deazaguanin 25.9 86 0.0019 37.6 4.8 47 262-310 74-120 (639)
87 PRK05086 malate dehydrogenase; 25.7 56 0.0012 35.5 3.0 56 459-520 65-123 (312)
88 COG4454 Uncharacterized copper 25.7 74 0.0016 30.8 3.4 17 701-717 116-132 (158)
89 PF03808 Glyco_tran_WecB: Glyc 25.6 1.7E+02 0.0037 28.7 6.2 49 453-520 89-139 (172)
90 PF11906 DUF3426: Protein of u 24.9 2.9E+02 0.0062 26.1 7.5 60 658-717 68-136 (149)
91 PLN02602 lactate dehydrogenase 24.8 46 0.001 36.9 2.2 55 459-520 101-159 (350)
92 TIGR01763 MalateDH_bact malate 24.6 51 0.0011 35.7 2.4 54 461-521 67-124 (305)
93 PF06165 Glyco_transf_36: Glyc 24.5 57 0.0012 29.6 2.4 59 598-684 31-89 (110)
94 TIGR01771 L-LDH-NAD L-lactate 24.5 43 0.00093 36.2 1.8 55 459-520 60-118 (299)
95 PF08530 PepX_C: X-Pro dipepti 23.6 3.5E+02 0.0076 27.3 8.3 55 659-717 97-162 (218)
96 PF02450 LCAT: Lecithin:choles 23.3 90 0.0019 35.0 4.1 60 494-553 107-174 (389)
97 PF08885 GSCFA: GSCFA family; 23.0 2.7E+02 0.0058 29.4 7.3 22 454-475 92-113 (251)
98 cd05290 LDH_3 A subgroup of L- 22.6 51 0.0011 35.8 2.0 57 459-520 64-124 (307)
99 cd05294 LDH-like_MDH_nadp A la 22.6 75 0.0016 34.5 3.3 57 459-520 68-126 (309)
100 PRK00066 ldh L-lactate dehydro 22.5 62 0.0013 35.2 2.6 55 459-520 69-127 (315)
101 CHL00162 thiG thiamin biosynth 22.3 2.1E+02 0.0045 30.2 6.1 84 225-325 149-242 (267)
102 PF14524 Wzt_C: Wzt C-terminal 22.3 3.4E+02 0.0073 24.8 7.3 70 657-743 34-107 (142)
103 PF01729 QRPTase_C: Quinolinat 22.2 4.1E+02 0.0088 26.2 8.0 28 158-197 2-29 (169)
104 PRK01008 queuine tRNA-ribosylt 22.1 94 0.002 34.7 3.9 76 262-344 76-186 (372)
105 PF05690 ThiG: Thiazole biosyn 22.0 91 0.002 32.4 3.4 84 225-325 135-228 (247)
106 PRK15299 fimbrial chaperone pr 21.9 1.7E+02 0.0038 30.1 5.7 54 661-716 39-94 (227)
107 PF08626 TRAPPC9-Trs120: Trans 21.8 4.3E+02 0.0094 34.4 10.3 61 656-717 797-879 (1185)
108 cd03707 EFTU_III Domain III of 21.8 5E+02 0.011 22.1 8.6 67 659-732 5-78 (90)
109 PRK11840 bifunctional sulfur c 21.5 1.7E+02 0.0038 31.9 5.6 81 227-325 211-302 (326)
110 cd05291 HicDH_like L-2-hydroxy 21.1 61 0.0013 35.0 2.2 54 460-520 65-122 (306)
111 cd06533 Glyco_transf_WecG_TagA 21.0 3.2E+02 0.007 26.7 7.1 40 462-520 98-137 (171)
112 TIGR03352 VI_chp_3 type VI sec 20.9 1.4E+02 0.003 28.7 4.3 25 693-717 80-104 (146)
113 PRK13556 azoreductase; Provisi 20.8 2.2E+02 0.0047 28.7 6.1 37 455-502 81-117 (208)
114 TIGR01334 modD putative molybd 20.7 7.4E+02 0.016 26.5 10.1 31 157-197 105-135 (277)
115 COG2003 RadC DNA repair protei 20.6 74 0.0016 32.8 2.5 51 227-278 158-209 (224)
116 PRK15249 fimbrial chaperone pr 20.4 1.8E+02 0.0039 30.6 5.4 54 661-716 45-103 (253)
117 COG2022 ThiG Uncharacterized e 20.4 2.2E+02 0.0048 29.6 5.7 81 228-325 145-235 (262)
118 PF04481 DUF561: Protein of un 20.3 3.1E+02 0.0067 28.3 6.7 83 295-388 72-155 (242)
119 PF13598 DUF4139: Domain of un 20.2 2.1E+02 0.0045 30.9 6.1 57 659-717 243-313 (317)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=3.2e-164 Score=1445.76 Aligned_cols=732 Identities=49% Similarity=0.929 Sum_probs=635.2
Q ss_pred cCCCCCcCCCCCChHHHHHHHHhcCCHHHHHHhhcCCCCCCCCCCcchhhhhhhcccccccccccCCCCCCcccC-CCCC
Q 040836 8 KLSDFPYCDAKLPYPERAKDLVERMTLPEKVQQMGDLAYGVPRLGLPLYEWWSEALHGVSFIGRRTNSPPGTHFD-SEVP 86 (758)
Q Consensus 8 ~~~~~~~~d~~~~~~~rv~~ll~~MTleEKi~ql~~~~~~i~~lgi~~~~~~~~~~~gv~~~~~~~~~~~g~~~~-~~~~ 86 (758)
+...+||||+++++++|+++||++||||||++||.+...+++|||||.+.||+|++||++..+ +|+++. +.+.
T Consensus 36 ~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~------~g~~~~~g~~~ 109 (779)
T PLN03080 36 TFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNG------PGVSFNSGPVS 109 (779)
T ss_pred cccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCC------CccccccCCCC
Confidence 356699999999999999999999999999999998888999999999999999999997544 677764 3355
Q ss_pred CcccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccccccceecccCCCCCCccccCcCCChHHHHHHHHHHHh
Q 040836 87 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTFWSPNINVVRDPRWGRVLETPGEDPYVVGRYAINYVR 166 (758)
Q Consensus 87 ~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~~~~g~~G~~~laP~vdv~r~p~~gr~~esfgeDP~l~~~~a~a~v~ 166 (758)
++|.||++|++|||||++|++++|+++|+|+|+++|.|.+|+++|+|++||.|||||||++|||||||+|+++||.|||+
T Consensus 110 ~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~ 189 (779)
T PLN03080 110 AATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVK 189 (779)
T ss_pred CceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999997665557778999999999999999999999999999999999999
Q ss_pred hhccCCCCcc-ccCCCCCCcceeeeecccccCccCCCCCCCcccccccCCHHHHHHhccHHHHHHHHcCCCceEEeeccc
Q 040836 167 GLQDVEGVEY-HRDSDSRPLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNR 245 (758)
Q Consensus 167 G~Q~~~g~~~-~~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~ 245 (758)
|+|+. +... ..+...++.+|+||+||||||+++.+.+..|...++.+++++|+|+||+||++||++|.+++||||||+
T Consensus 190 GlQ~~-~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~ 268 (779)
T PLN03080 190 GFQGG-KWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQ 268 (779)
T ss_pred HhcCC-CcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcC
Confidence 99985 1000 000001244599999999999998777778888899999999999999999999999988899999999
Q ss_pred cCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCCcchHHHHHHHHHcCC
Q 040836 246 VNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDYYTNFTMGAVQQGK 325 (758)
Q Consensus 246 vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~l~~av~~g~ 325 (758)
+||+|||.|++||++ ||+||||+|+|||||++|..+.. .|++..+.+|++++||+||+||+|..++.+.|.+||++|+
T Consensus 269 vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~-~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~ 346 (779)
T PLN03080 269 VNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFE-YQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGK 346 (779)
T ss_pred cCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhh-cccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCC
Confidence 999999999999986 99999999999999999999987 7778788999999999999999998877789999999999
Q ss_pred CcHHhHHhHHHHHHHHHHHhCCCCCCc---ccccCCCCCCCCHHHHHHHHHHHhhceEEecCCCCCCCCCCCCCceEEEE
Q 040836 326 IAEADIDTSLRFLYIVLMRLGYFDGSP---QYKNLGKNNICNPQHIELAAEAARQGIVLLKNDNGALPLNTGNIKTLALV 402 (758)
Q Consensus 326 i~~~~id~av~Ril~~k~~lGlfd~~~---~~~~~~~~~v~~~~~~~la~~~a~eSiVLLKN~~~~LPL~~~~~~kIavi 402 (758)
|++++||+||+|||++|+++|+|++++ +|.......+.+++|+++|+++|++|||||||++++|||++.+.+||+||
T Consensus 347 i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaVi 426 (779)
T PLN03080 347 VQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAII 426 (779)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEE
Confidence 999999999999999999999999532 23334456678999999999999999999999999999987655799999
Q ss_pred ccCccccccccccccCCCCccCCHHHHHHhhccceeecCCCCcccccCCCChHHHHHHhhcCCEEEEEEcCCCCcccCCC
Q 040836 403 GPHANATKAMIGNYEGTPCRYTSPMDGFYAYSKVINYAPGCADIVCQNNSMIPAAIDAAKNADATVIVAGLDLSVEAEGK 482 (758)
Q Consensus 403 Gp~a~~~~~~~G~~~g~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~ 482 (758)
||+|+....++|+|++.+++.+|++++|+++...+.|..||....+.+...+++|+++|++||+|||++|.+...++|+.
T Consensus 427 Gp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~ 506 (779)
T PLN03080 427 GPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDH 506 (779)
T ss_pred CCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCC
Confidence 99999988888889998899999999999987778899998765555556788999999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeecccccCCCccEEEEccCCCchhHHHHHHHHhcCCCCCcccce
Q 040836 483 DRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDINFAKNNPKIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPI 562 (758)
Q Consensus 483 Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l~~~~~~~~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPv 562 (758)
||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+++.++++|||++||||+++|+|+||||||++|||||||+
T Consensus 507 Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPv 586 (779)
T PLN03080 507 DRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPM 586 (779)
T ss_pred CcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCee
Confidence 99999999999999999998777899999999999999998766789999999999999999999999999999999999
Q ss_pred eecccccCCCCCcCCCCCCC--CCCCCCcccccCCCcccccCCCCCCCCceeeccCCCCccccccccccccccccccCCC
Q 040836 563 TWYEANYVKIPYTSMPLRPV--NNFPGRTYKFFDGPVVYPFGYGLSYTQFKYKVASSPKSVDIKLDKDQQCRDINYTVGT 640 (758)
Q Consensus 563 T~~p~~~~~~p~~~~~~~~~--~~~~g~~Yr~~~~~~lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (758)
||||+++.++|+++++++++ .+|+|++||||+.+|+||||||||||||+|++++++..+++.......+. .....
T Consensus 587 T~~p~~~~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~--~~~~~- 663 (779)
T PLN03080 587 TWYPESFTAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSI--SRKPL- 663 (779)
T ss_pred eecccccccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccccccccccc--ccccc-
Confidence 99999999999987776554 56899999999999999999999999999999874332112110000000 00000
Q ss_pred CCCCC--ccccccc-ccCCCceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccccccCCCCEEEEEEEec
Q 040836 641 NKPPC--AAVLIDD-VKCKDYKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMN 716 (758)
Q Consensus 641 ~~~~~--~~~~~~~-~~~~~~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~ 716 (758)
..+.. ..+.... ..|+...++|+|+|||||+++|+||||||+++| ++..+|.|||+||+||+|+||||++|+|+|+
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~ 743 (779)
T PLN03080 664 LQRRDELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVD 743 (779)
T ss_pred cccccccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeC
Confidence 00000 0000001 223323699999999999999999999999999 7788999999999999999999999999999
Q ss_pred cCCCceeEeCCCCeEEcCeeEEEEEecCCCceEEE
Q 040836 717 ACKSLKIVDNAANSLLASGAHTILVGEGVGGVSFP 751 (758)
Q Consensus 717 ~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~ 751 (758)
.+++|++||++++|++|+|+|+|+||+++|+++++
T Consensus 744 ~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 744 PCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIE 778 (779)
T ss_pred chHHceEEcCCCcEEEeCccEEEEEeCCccceEEe
Confidence 65789999999999999999999999999998875
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=1.7e-142 Score=1266.00 Aligned_cols=675 Identities=28% Similarity=0.473 Sum_probs=555.8
Q ss_pred CCChHHHHHHHHhcCCHHHHHHhhcCCCCCC-----------CCCCcchhhh--hhhcccccccccccCCCCCCccc---
Q 040836 18 KLPYPERAKDLVERMTLPEKVQQMGDLAYGV-----------PRLGLPLYEW--WSEALHGVSFIGRRTNSPPGTHF--- 81 (758)
Q Consensus 18 ~~~~~~rv~~ll~~MTleEKi~ql~~~~~~i-----------~~lgi~~~~~--~~~~~~gv~~~~~~~~~~~g~~~--- 81 (758)
+.+.++|+++||++||||||||||++....- ...++..+.- ..+.+..++... ....+.|++.
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~-~~~~~~giP~li~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQV-MQLSRLKIPLFFA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHH-hhCCCCCCCeeEE
Confidence 4578999999999999999999998742110 1111111100 000000011100 0012234431
Q ss_pred CCCCC-CcccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcccc-ccceecccCCCCCCccccCcCCChHHHHH
Q 040836 82 DSEVP-GATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVVRDPRWGRVLETPGEDPYVVGR 159 (758)
Q Consensus 82 ~~~~~-~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~~~~g~~G~~~-laP~vdv~r~p~~gr~~esfgeDP~l~~~ 159 (758)
.+... ..|.||++++||||||+++++++|+++|+|+|++ |+|+ |+|++||.|||+|||++|||||||+++++
T Consensus 110 ~D~e~G~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~gr~~rsfgeDP~lv~~ 183 (765)
T PRK15098 110 YDVVHGQRTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWGRASEGFGEDTYLTSI 183 (765)
T ss_pred EeCCCCccccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCccccccCcCCCHHHHHH
Confidence 11111 3689999999999999999999999999999999 8898 99999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCccccCCCCCCcceeeeecccccCccCCCCCCCcccccccCCHHHHHHhccHHHHHHHHcCCCceE
Q 040836 160 YAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSV 239 (758)
Q Consensus 160 ~a~a~v~G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~v 239 (758)
|+.|||+|+|++ +. ....+|++|+|||||||..+ .+|....+.+++++|+|.||+||+++|++| +++|
T Consensus 184 ~~~a~v~GlQ~~-~~-------~~~~gV~a~~KHFpG~g~~~---~~~~~~~~~~~~~~l~e~~l~PF~~ai~ag-~~~V 251 (765)
T PRK15098 184 MGKTMVKAMQGK-SP-------ADRYSVMTSVKHFALYGAVE---GGRDYNTVDMSPQRMFNDYLPPYKAGLDAG-SGGV 251 (765)
T ss_pred HHHHHHHHHcCC-CC-------CCCCCEEEECcEEeCCCCcc---cCccCccCcCCHHHHHHHHHHHHHHHHHhC-CCEE
Confidence 999999999986 20 01224999999999999543 234444567899999999999999999988 5699
Q ss_pred EeeccccCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCCcc-hHHHHH
Q 040836 240 MCSYNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDY-YTNFTM 318 (758)
Q Consensus 240 M~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~-~~~~l~ 318 (758)
|||||.+||+|||.|+++|+++||+||||+|+|||||++|..+.. |++..+..|++++||+||+||+|.+. +.+.|.
T Consensus 252 M~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~--~~~~~~~~ea~~~Al~AG~Dl~m~~~~~~~~l~ 329 (765)
T PRK15098 252 MVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK--HGVAADPEDAVRLALKSGIDMSMSDEYYSKYLP 329 (765)
T ss_pred EecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh--cccCCCHHHHHHHHHHcCCCcccCchhHHHHHH
Confidence 999999999999999999999999999999999999999998874 66677889999999999999999754 446799
Q ss_pred HHHHcCCCcHHhHHhHHHHHHHHHHHhCCCCCCcccccCC-------CCCCCCHHHHHHHHHHHhhceEEecCCCCCCCC
Q 040836 319 GAVQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQYKNLG-------KNNICNPQHIELAAEAARQGIVLLKNDNGALPL 391 (758)
Q Consensus 319 ~av~~g~i~~~~id~av~Ril~~k~~lGlfd~~~~~~~~~-------~~~v~~~~~~~la~~~a~eSiVLLKN~~~~LPL 391 (758)
+||++|+|++++||+||+|||++|+++|||++ ||.... ...+.+++|+++|+++|++|||||||++++|||
T Consensus 330 ~av~~G~i~~~~id~av~RIL~~k~~~glf~~--p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~LPL 407 (765)
T PRK15098 330 GLVKSGKVTMAELDDAVRHVLNVKYDMGLFND--PYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPL 407 (765)
T ss_pred HHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCC--CccccccccccccccccCCHHHHHHHHHHHHhcEEEEecCCCCCCC
Confidence 99999999999999999999999999999984 353221 122457899999999999999999999999999
Q ss_pred CCCCCceEEEEccCcccccccccccc--CCCCccCCHHHHHHhhcc---ceeecCCCCcccc------------------
Q 040836 392 NTGNIKTLALVGPHANATKAMIGNYE--GTPCRYTSPMDGFYAYSK---VINYAPGCADIVC------------------ 448 (758)
Q Consensus 392 ~~~~~~kIaviGp~a~~~~~~~G~~~--g~~~~~~t~~~gl~~~~~---~~~y~~g~~~~~~------------------ 448 (758)
++. +||+||||+++....+.|+|+ +.+.+.+|+++||+++.. .+.|..||.....
T Consensus 408 ~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~ 485 (765)
T PRK15098 408 KKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDP 485 (765)
T ss_pred CCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhcccccccccc
Confidence 854 699999999988766677775 567788999999999763 4788888742111
Q ss_pred -cCCCChHHHHHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeecccccCC
Q 040836 449 -QNNSMIPAAIDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDINFAKNNP 527 (758)
Q Consensus 449 -~~~~~~~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l~~~~~~~ 527 (758)
..+..+++|+++|+++|++||++|.+...++|+.||.+|.||+.|.+||+++++. ++|||||+++|+|++|+|+. +
T Consensus 486 ~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl~~g~P~~l~~~~--~ 562 (765)
T PRK15098 486 RSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVLMNGRPLALVKED--Q 562 (765)
T ss_pred ccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEEeCCceeeccchh--h
Confidence 1124578899999999999999999988999999999999999999999999875 67999999999999999874 4
Q ss_pred CccEEEEccCCCchhHHHHHHHHhcCCCCCcccceeecccccCCCCCcCCCCCCCCCC-----CCCcccccCC--Ccccc
Q 040836 528 KIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITWYEANYVKIPYTSMPLRPVNNF-----PGRTYKFFDG--PVVYP 600 (758)
Q Consensus 528 ~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~-----~g~~Yr~~~~--~~lyp 600 (758)
+++|||++|+||+++|+|+||||||++|||||||+|| |++.+++|.++........| .+.+||||+. +|+||
T Consensus 563 ~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~plyp 641 (765)
T PRK15098 563 QADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSVGQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLYP 641 (765)
T ss_pred cCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCCCcCccccccCCCCCccccCcccccccceeccCCCcccc
Confidence 8999999999999999999999999999999999998 88888999754322111111 1225899986 49999
Q ss_pred cCCCCCCCCceeeccCCCCccccccccccccccccccCCCCCCCCcccccccccCCCceEEEEEEEEeCCCCCcceeEEE
Q 040836 601 FGYGLSYTQFKYKVASSPKSVDIKLDKDQQCRDINYTVGTNKPPCAAVLIDDVKCKDYKFTFQIEVENMGKMDGSEVVMV 680 (758)
Q Consensus 601 FG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG~~~G~evvQl 680 (758)
||||||||+|+|++++. ++. . .. .++.++|+|+|||||+++|+|||||
T Consensus 642 FG~GLSYT~F~ys~l~v--------~~~-~-----~~------------------~~~~i~v~v~V~NtG~~~G~EVvQl 689 (765)
T PRK15098 642 FGYGLSYTTFTVSDVKL--------SSP-T-----MK------------------RDGKVTASVTVTNTGKREGATVVQL 689 (765)
T ss_pred ccCCCCCccEEeeccEe--------ccc-c-----cc------------------CCCeEEEEEEEEECCCCCccEEEEE
Confidence 99999999999999882 210 0 00 0257999999999999999999999
Q ss_pred eeeCC-CCccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEcCeeEEEEEecCCCceEEEEEEe
Q 040836 681 YSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLASGAHTILVGEGVGGVSFPLQLN 755 (758)
Q Consensus 681 Yv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~~~~~ 755 (758)
|+++| +++.+|.|||+||+||+|+|||+++|+|+|+. ++|++||.+++|++|+|+|+|+||.||++++ +.+++
T Consensus 690 Yv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~~-~~~~~ 763 (765)
T PRK15098 690 YLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARVK-QGSFE 763 (765)
T ss_pred eccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCccc-ceEEE
Confidence 99999 88999999999999999999999999999998 7999999999999999999999999999986 34443
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-64 Score=551.35 Aligned_cols=288 Identities=33% Similarity=0.622 Sum_probs=253.8
Q ss_pred CcccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcccc-ccceecccCCCCCCccccC-cCCChHHHHHHHHHH
Q 040836 87 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVVRDPRWGRVLET-PGEDPYVVGRYAINY 164 (758)
Q Consensus 87 ~~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~~~~g~~G~~~-laP~vdv~r~p~~gr~~es-fgeDP~l~~~~a~a~ 164 (758)
++|.||+++++|||||+++++++|+++|+|+|++ |+|+ |+||+||.|||+|||++|+ |||||++++.|+.||
T Consensus 79 ~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~ 152 (397)
T COG1472 79 GFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAF 152 (397)
T ss_pred CCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999 8898 9999999999999998888 999999999999999
Q ss_pred HhhhccCCCCccccCCCCCCcceeeeecccccCccCCCCCCCcccccccCCHHHHHHhccHHHHHHHHcCC--CceEEee
Q 040836 165 VRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGD--VSSVMCS 242 (758)
Q Consensus 165 v~G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~--~~~vM~s 242 (758)
|+|||+. | |++|+|||||||..+ .+++..+..++++.|+|.|++||+.+++.+. +.++|++
T Consensus 153 i~Glq~~-g-------------v~at~KHFpGhG~~~---~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~ 215 (397)
T COG1472 153 IKGLQGA-G-------------VAATIKHFPGHGAVE---GDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVA 215 (397)
T ss_pred HHHHhhC-C-------------ceeeeccccCCCCCc---CCcccccCCCChHHHHHhhccchHHHHHhccccceEEeee
Confidence 9999998 7 999999999998543 2333222678999999999999999999995 6799999
Q ss_pred ccccCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCCcc--hHHHHHHH
Q 040836 243 YNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDY--YTNFTMGA 320 (758)
Q Consensus 243 y~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~--~~~~l~~a 320 (758)
||.+||.|||.|+++|++|||++|||+|+|||||++|+++.. . ..+..+++.++++||+||+|.+. +...+..+
T Consensus 216 y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~-~---~g~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~ 291 (397)
T COG1472 216 YPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAA-A---HGSAADRAEAALKAGVDIVLVCNELYEAYLVVL 291 (397)
T ss_pred ccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHH-h---ccCHHHHHHHHHhcCCCEEecCCchhHHHHHHH
Confidence 999999999999999999999999999999999999998776 2 34677888889999999998633 32334444
Q ss_pred HHcCCCcHHhHHhHHHHHHHHHHHhCCCCCCcccccCCCCCCCCHHHHHHHHHHHhhceEEecCCCCCCCCCCCCCceEE
Q 040836 321 VQQGKIAEADIDTSLRFLYIVLMRLGYFDGSPQYKNLGKNNICNPQHIELAAEAARQGIVLLKNDNGALPLNTGNIKTLA 400 (758)
Q Consensus 321 v~~g~i~~~~id~av~Ril~~k~~lGlfd~~~~~~~~~~~~v~~~~~~~la~~~a~eSiVLLKN~~~~LPL~~~~~~kIa 400 (758)
...+ ++++++|++++|||++|+++|+|++ ||.. +|++++++++++|+|||||+..+|||+ .+.++|+
T Consensus 292 ~~~~-~~~~~i~~~v~Ril~~k~~~~~f~~--~~~~---------~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~ 358 (397)
T COG1472 292 ELVG-LSEARLDDAVRRILRVKFKLGLFEN--PYSS---------EHRALAREAARESIVLLKNDGGLLPLK-KSAKRIA 358 (397)
T ss_pred HhcC-CcHHHHHHHHHHHHHHHHHhccccC--CCch---------hhHHHHHHHHHHHHHHHHhccCCCccc-cccCceE
Confidence 4455 9999999999999999999999994 3432 899999999999999999998999999 4456999
Q ss_pred EEccCcccccccccccc
Q 040836 401 LVGPHANATKAMIGNYE 417 (758)
Q Consensus 401 viGp~a~~~~~~~G~~~ 417 (758)
++||+++.. . |+|+
T Consensus 359 v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 359 VIGPYADDG-D--GGWS 372 (397)
T ss_pred EEccccccC-C--CCee
Confidence 999999987 4 5555
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=1e-59 Score=504.97 Aligned_cols=225 Identities=30% Similarity=0.545 Sum_probs=188.5
Q ss_pred cccCchhhhhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcccc-ccceecccCCCCCCccccCcCCChHHHHHHHHHHHh
Q 040836 88 ATSFPTVILTTASFNESLWKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVVRDPRWGRVLETPGEDPYVVGRYAINYVR 166 (758)
Q Consensus 88 ~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~~~~g~~G~~~-laP~vdv~r~p~~gr~~esfgeDP~l~~~~a~a~v~ 166 (758)
.|.||+++++|||||+++++++|+++|+|++++ |+|+ |||++||.|+|+|||+.|||||||+++++|+.|||+
T Consensus 69 ~t~~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~ 142 (299)
T PF00933_consen 69 FTAFPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVR 142 (299)
T ss_dssp S---S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHH
T ss_pred CccCcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhc
Confidence 599999999999999999999999999999999 8898 999999999999999999999999999999999999
Q ss_pred hhccCCCCccccCCCCCCcceeeeecccccCc-cCCCCCCCcccccccCCHHHHHHhccHHHHHHHHcCCCceEEeeccc
Q 040836 167 GLQDVEGVEYHRDSDSRPLKISACCKHYAAYD-LDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSVMCSYNR 245 (758)
Q Consensus 167 G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~g-~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~vM~sy~~ 245 (758)
|+|+. | |++|+||||||+ .++|. ......+++++|+|.||+||+.+|+++.+.+||+||+.
T Consensus 143 G~q~~-g-------------v~~~~KHFpG~~~~d~~~----~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~ 204 (299)
T PF00933_consen 143 GLQGA-G-------------VAATAKHFPGHGAQDSHR----DLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPA 204 (299)
T ss_dssp HHHCT-T-------------SEEEEEEETTGGCSCTTT----TTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STC
T ss_pred ccccc-c-------------cccccccccccccccccc----ccceecCCcccccchhcccchhcccccccceeeeeccc
Confidence 99998 8 999999999974 44443 33345689999999999999999944446799999999
Q ss_pred cCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCCcch----HHHHHHHH
Q 040836 246 VNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDYY----TNFTMGAV 321 (758)
Q Consensus 246 vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~----~~~l~~av 321 (758)
+|++|+|+|+++|+++||++|||+|+|||||++|+++.. ..+..+++++||+||+||+|.+.. .+.|.++|
T Consensus 205 id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~-----~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av 279 (299)
T PF00933_consen 205 IDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSS-----NYSIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAV 279 (299)
T ss_dssp CTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHC-----CTTHHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHH
T ss_pred cCCccchhhhccchhhCcCcccCCCeEecccchHHHHHh-----ccccchHHHHHHhCccCeeCCCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 445899999999999999987432 48899999
Q ss_pred HcCCCcHHhHHhHHHHHHHH
Q 040836 322 QQGKIAEADIDTSLRFLYIV 341 (758)
Q Consensus 322 ~~g~i~~~~id~av~Ril~~ 341 (758)
++|.++++|||+||+|||++
T Consensus 280 ~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 280 ESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HTTSSGHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=6.2e-47 Score=408.70 Aligned_cols=223 Identities=20% Similarity=0.237 Sum_probs=190.2
Q ss_pred CcccCchhhhhhhcCC------HHHHHHHHHHHHHHHHHhhccCCCcccc-ccceecccCCCCCCccccCcCCChHHHHH
Q 040836 87 GATSFPTVILTTASFN------ESLWKKIGQTVSTEARAMYNLGNAGLTF-WSPNINVVRDPRWGRVLETPGEDPYVVGR 159 (758)
Q Consensus 87 ~~t~fP~~~~laat~d------~~l~~~~g~~~a~E~ra~~~~g~~G~~~-laP~vdv~r~p~~gr~~esfgeDP~l~~~ 159 (758)
+.|.||+++++||||| +++++++|+++|+|+|++ |+|+ |+|++||.++++| |+.|+|||||+++++
T Consensus 74 ~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~ 146 (337)
T PRK05337 74 GFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAA 146 (337)
T ss_pred CCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCccccCccCCCCCCCe-eeccCCCCCHHHHHH
Confidence 5789999999999999 999999999999999999 8888 9999999865554 678999999999999
Q ss_pred HHHHHHhhhccCCCCccccCCCCCCcceeeeecccccCccCCCCCCCcccccccCCHHHHHHhccHHHHHHHHcCCCceE
Q 040836 160 YAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAYDLDNWEGNDRFHFDSRVTEQDMQETFILPFEMCVNEGDVSSV 239 (758)
Q Consensus 160 ~a~a~v~G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~g~~~~~~~~r~~~~~~~~~~~l~e~~l~pF~~ai~~g~~~~v 239 (758)
|+.|||+|+|+. | |++|+|||||||....+.+.... ....+.++|++.||+||+.+|++| +.+|
T Consensus 147 ~a~a~i~Glq~~-g-------------v~~~~KHFpG~G~~~~dsh~~~~-~~~~~~~el~~~~l~PF~~ai~~g-~~~v 210 (337)
T PRK05337 147 LASAFIDGMHAA-G-------------MAATGKHFPGHGAVEADSHVETP-VDERPLEEIRAEDMAPFRALIAAG-LDAV 210 (337)
T ss_pred HHHHHHHHHHHC-C-------------CEEEecccCCCCCCcCCCCCCCC-CCCCCHHHHHhhhHHHHHHHHhcC-CCEE
Confidence 999999999998 8 99999999999965432222111 123466799999999999999998 6699
Q ss_pred Eee---ccccCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCCcc---h
Q 040836 240 MCS---YNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGDY---Y 313 (758)
Q Consensus 240 M~s---y~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~---~ 313 (758)
||| |+.+|++|||.|+++|+++||+||||+|+|||||++|+++.. ..+.++++++||+||+||+|.+. .
T Consensus 211 M~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~-----~~~~~~~~~~al~AG~Dl~l~~~~~~~ 285 (337)
T PRK05337 211 MPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV-----AGDYAERAQAALDAGCDMVLVCNNRDG 285 (337)
T ss_pred EeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh-----cCCHHHHHHHHHHcCCCEEeeCCCHHH
Confidence 999 899999999999999999999999999999999999987643 56788999999999999987643 2
Q ss_pred HHHHHHHHHcCCCcHHhHHhHHHHHHHHHHHh
Q 040836 314 TNFTMGAVQQGKIAEADIDTSLRFLYIVLMRL 345 (758)
Q Consensus 314 ~~~l~~av~~g~i~~~~id~av~Ril~~k~~l 345 (758)
...+.+++.+ +.+.+|+++++.+.
T Consensus 286 ~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 286 AVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred HHHHHHHHHh--------hccHHHHHHHhccc
Confidence 3455555544 77789999988663
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=9.2e-40 Score=337.61 Aligned_cols=216 Identities=39% Similarity=0.591 Sum_probs=156.5
Q ss_pred eEEecCCCCCCCCCCCCCceEEEEccCcccccccccccc-CCCCccCCHHHHHHhhccce--eecCCCCcccccCCCChH
Q 040836 379 IVLLKNDNGALPLNTGNIKTLALVGPHANATKAMIGNYE-GTPCRYTSPMDGFYAYSKVI--NYAPGCADIVCQNNSMIP 455 (758)
Q Consensus 379 iVLLKN~~~~LPL~~~~~~kIaviGp~a~~~~~~~G~~~-g~~~~~~t~~~gl~~~~~~~--~y~~g~~~~~~~~~~~~~ 455 (758)
||||||++++|||++++. ||+|+|+.+.....++|++. ..+.+..+++++|++++... .+..++ ........++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGG--DAVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCC--CCCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeec--cccccccchH
Confidence 799999999999998642 99999999998766555543 34567789999999987532 221111 0112356788
Q ss_pred HHHHHhhcCCEEEEEEcCCCCcccCC--------CCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeecccccCC
Q 040836 456 AAIDAAKNADATVIVAGLDLSVEAEG--------KDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDINFAKNNP 527 (758)
Q Consensus 456 ~a~~~a~~aD~vIv~vG~~~~~e~Eg--------~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l~~~~~~~ 527 (758)
++++.++++|++||++|. .++|+ .||.++.||..|.+||+++++.+ +|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 999999999999999992 23333 69999999999999999998764 6899999999999997765 4
Q ss_pred CccEEEEccCCCchhHHHHHHHHhcCCCCCcccceeecccccCCCCCcCCCCCCCCCCCCCcccccCCCcccccCCCCCC
Q 040836 528 KIKSILWVGYPGEEGGRAIADVIFGKYNPGGRLPITWYEANYVKIPYTSMPLRPVNNFPGRTYKFFDGPVVYPFGYGLSY 607 (758)
Q Consensus 528 ~v~AiL~a~~~G~~~g~AlAdVL~G~~nPsGkLPvT~~p~~~~~~p~~~~~~~~~~~~~g~~Yr~~~~~~lypFG~GLSY 607 (758)
+++|||++|++|+++++|+||||||++|||||||+|| |++..++|..+... ..+++|+|....++|||||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLsy 225 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSMEDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLSY 225 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSGGGTTTTTTTS------THCCHHHHTTSESB-TT--B-T
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCChhhCCCccccc-----ccCcccccCCCCccCcCCCCCEe
Confidence 8999999999999999999999999999999999998 88888888653211 12355777788899999999999
Q ss_pred CC
Q 040836 608 TQ 609 (758)
Q Consensus 608 Tt 609 (758)
|+
T Consensus 226 t~ 227 (227)
T PF01915_consen 226 TY 227 (227)
T ss_dssp T-
T ss_pred eC
Confidence 96
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.82 E-value=1.3e-20 Score=158.22 Aligned_cols=69 Identities=33% Similarity=0.569 Sum_probs=60.0
Q ss_pred eeEEEeeeCC-CCccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCC-CCeEEcCeeEEEEEecCC
Q 040836 676 EVVMVYSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNA-ANSLLASGAHTILVGEGV 745 (758)
Q Consensus 676 evvQlYv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 745 (758)
||||||+++| ++..+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999 88999999999999999999999999999999 899999999 799999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.73 E-value=0.0048 Score=54.62 Aligned_cols=63 Identities=25% Similarity=0.308 Sum_probs=45.9
Q ss_pred CceEEEEEEEEeCCCC-CcceeEEEeeeCCCCccccchhhcccccc-ccCCCCEEEEEEEeccCCCceeEeCCCCeEEcC
Q 040836 657 DYKFTFQIEVENMGKM-DGSEVVMVYSKPPGIAGTHIKQVIGYERV-FIAAGQSAKVGFTMNACKSLKIVDNAANSLLAS 734 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~-~G~evvQlYv~~~~~~~~P~k~L~gF~kv-~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~ 734 (758)
++.++++++|+|.|.. ++.-.|++|+... +.+-..| .|+|||+++++|++.. . .+
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~---------~~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~ 74 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGN---------SVSTVTIPSLAPGESETVTFTWTP-P-------------SP 74 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTE---------EEEEEEESEB-TTEEEEEEEEEE--S-------------S-
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCc---------eeccEEECCcCCCcEEEEEEEEEe-C-------------CC
Confidence 4689999999999987 4667888888755 1144555 6999999999999997 3 57
Q ss_pred eeEEEEEe
Q 040836 735 GAHTILVG 742 (758)
Q Consensus 735 G~y~i~vG 742 (758)
|.|+|.+=
T Consensus 75 G~~~i~~~ 82 (101)
T PF07705_consen 75 GSYTIRVV 82 (101)
T ss_dssp CEEEEEEE
T ss_pred CeEEEEEE
Confidence 88887764
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.85 E-value=0.035 Score=47.27 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=38.4
Q ss_pred CceEEEEEEEEeCCCCCcceeEEEeeeCC-CCc--cccchhhcccccc-ccCCCCEEEEEEEeccCCCceeEeCCCCeEE
Q 040836 657 DYKFTFQIEVENMGKMDGSEVVMVYSKPP-GIA--GTHIKQVIGYERV-FIAAGQSAKVGFTMNACKSLKIVDNAANSLL 732 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~--~~P~k~L~gF~kv-~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~ 732 (758)
++.++++++|+|.|..+-.. +-|=+..| +-. ..|. ++ .|+|||+++++|.|....+.
T Consensus 4 G~~~~~~~tv~N~g~~~~~~-v~~~l~~P~GW~~~~~~~-------~~~~l~pG~s~~~~~~V~vp~~a----------- 64 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTN-VSLSLSLPEGWTVSASPA-------SVPSLPPGESVTVTFTVTVPADA----------- 64 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS--EEEEE--TTSE---EEE-------EE--B-TTSEEEEEEEEEE-TT------------
T ss_pred CCEEEEEEEEEECCCCceee-EEEEEeCCCCccccCCcc-------ccccCCCCCEEEEEEEEECCCCC-----------
Confidence 36799999999999765332 33334456 422 2232 22 79999999999999874322
Q ss_pred cCeeEEEEEe
Q 040836 733 ASGAHTILVG 742 (758)
Q Consensus 733 ~~G~y~i~vG 742 (758)
++|+|.|.+-
T Consensus 65 ~~G~y~v~~~ 74 (78)
T PF10633_consen 65 APGTYTVTVT 74 (78)
T ss_dssp -SEEEEEEEE
T ss_pred CCceEEEEEE
Confidence 5899998763
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=94.10 E-value=0.25 Score=42.55 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=34.1
Q ss_pred EEEEEEEEeCCCCC------cceeEEEeeeCC-CC------ccccchhhccccccccCCCCEEEEEEEeccCCCceeEeC
Q 040836 660 FTFQIEVENMGKMD------GSEVVMVYSKPP-GI------AGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDN 726 (758)
Q Consensus 660 ~~v~v~V~NtG~~~------G~evvQlYv~~~-~~------~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~ 726 (758)
+.++++|+|+++.+ .---.-+.|.++ +. -.+.- ..++..+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~F--tQal~~~~l~pGe~~~~~~~~~~-~~~~---- 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMF--TQALQEETLEPGESLTYEETWDL-KDLS---- 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT---------EEEEE-TT-EEEEEEEESS---------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchh--hheeeEEEECCCCEEEEEEEECC-CCCC----
Confidence 56788888888732 112223344444 32 12222 33456778999999999999998 5454
Q ss_pred CCCeEEcCeeEEEE
Q 040836 727 AANSLLASGAHTIL 740 (758)
Q Consensus 727 ~~~~~~~~G~y~i~ 740 (758)
||+|++-
T Consensus 75 -------~G~Y~~~ 81 (82)
T PF12690_consen 75 -------PGEYTLE 81 (82)
T ss_dssp -------SEEEEEE
T ss_pred -------CceEEEe
Confidence 8999874
No 11
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=91.79 E-value=3.5 Score=46.57 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=56.6
Q ss_pred HHHcCCCceEEeeccccCC-----cccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcC
Q 040836 230 CVNEGDVSSVMCSYNRVNG-----IPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAG 304 (758)
Q Consensus 230 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 304 (758)
.|+++.+ .+|.+.+++.| ..|+.++-+++.+|+.=+.. |.-+..- .|=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~Aep-----------------GEFs~RAFLNg 120 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEP-----------------GEFSKRAFLNG 120 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCC-----------------CcchHHHHhcC
Confidence 4556765 89999999987 46888988888888754433 2333322 23334444444
Q ss_pred -CCcCCC--------cchHHHHHHHHH--cCCCcHHhHHhHHHHHHHHHHHh
Q 040836 305 -LDLDCG--------DYYTNFTMGAVQ--QGKIAEADIDTSLRFLYIVLMRL 345 (758)
Q Consensus 305 -~D~~~~--------~~~~~~l~~av~--~g~i~~~~id~av~Ril~~k~~l 345 (758)
+|+.-- .........|++ +|.+ .++|++-.++++.+....
T Consensus 121 K~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~v 171 (454)
T COG0486 121 KLDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQV 171 (454)
T ss_pred CccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHh
Confidence 554210 111123444554 4765 457788888888887665
No 12
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.31 E-value=2 Score=38.11 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=44.6
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCCCCccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEcCeeE
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPPGIAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLASGAH 737 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~G~y 737 (758)
...+.+++|+|+|....+--++ .+....... -.-+..-.|+||++.++++++.+......++..-.-..+.|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~----~~~~~~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~~~~ 93 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVR----QPESLSSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEGGSF 93 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEE----eCCcCCCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECCeEE
Confidence 5678999999999998654333 231111110 1123455699999999999999425555554332223344444
Q ss_pred EE
Q 040836 738 TI 739 (758)
Q Consensus 738 ~i 739 (758)
.|
T Consensus 94 ~i 95 (102)
T PF14874_consen 94 EI 95 (102)
T ss_pred EE
Confidence 33
No 13
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.00 E-value=2.2 Score=47.82 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=49.2
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeee-CC-CC-ccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEcC
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSK-PP-GI-AGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLAS 734 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~-~~-~~-~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~ 734 (758)
.++.++|++.|-|.-+ +++. |=+. .| .- ..--.-+++ -.||.|+|||+++|++++.+.. -.+|
T Consensus 284 ~t~sf~V~IeN~g~~~-d~y~-Le~~g~pe~w~~~Fteg~~~-vt~vkL~~gE~kdvtleV~ps~-----------na~p 349 (513)
T COG1470 284 TTASFTVSIENRGKQD-DEYA-LELSGLPEGWTAEFTEGELR-VTSVKLKPGEEKDVTLEVYPSL-----------NATP 349 (513)
T ss_pred CceEEEEEEccCCCCC-ceeE-EEeccCCCCcceEEeeCceE-EEEEEecCCCceEEEEEEecCC-----------CCCC
Confidence 5688999999999653 2222 2222 33 21 111111111 3688899999999999999843 2379
Q ss_pred eeEEEEEecCCC
Q 040836 735 GAHTILVGEGVG 746 (758)
Q Consensus 735 G~y~i~vG~ss~ 746 (758)
|+|.+.|-.+++
T Consensus 350 G~Ynv~I~A~s~ 361 (513)
T COG1470 350 GTYNVTITASSS 361 (513)
T ss_pred CceeEEEEEecc
Confidence 999999887654
No 14
>PRK13202 ureB urease subunit beta; Reviewed
Probab=86.53 E-value=1.3 Score=39.44 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCccc----cchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIAGT----HIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~----P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
-+++++|+|||+++ +|+=-+.+ -.+-+ ....=.|+ .-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 36889999999985 77654444 21111 11111111 3467799999999884
No 15
>PRK13203 ureB urease subunit beta; Reviewed
Probab=86.28 E-value=1.3 Score=39.22 Aligned_cols=51 Identities=22% Similarity=0.153 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCc----cccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIA----GTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~----~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
=+++++|+|||+++ ||+=-+.. -.+ .--...=.|+ .-|..+|||+|+|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 35889999999985 77755544 211 1111111111 3467799999999874
No 16
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=84.55 E-value=2.4 Score=38.02 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=28.9
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCCCCccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEcCeeEEEE
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPPGIAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLASGAHTIL 740 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~ 740 (758)
.|+++++|.|... .+++ +.. ......|.||++++++|+-. ++|+|.++
T Consensus 44 ~v~l~~~N~~~~~-h~~~---i~~------------~~~~~~l~~g~~~~~~f~~~----------------~~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEFV---IPD------------LGISKVLPPGETATVTFTPL----------------KPGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EEEE---EGG------------GTEEEEE-TT-EEEEEEEE-----------------S-EEEEEB
T ss_pred eEEEEEEECCCCc-EEEE---ECC------------CceEEEECCCCEEEEEEcCC----------------CCEEEEEE
Confidence 3668889999885 3332 111 12335699999999998643 37888887
Q ss_pred Eec
Q 040836 741 VGE 743 (758)
Q Consensus 741 vG~ 743 (758)
-+-
T Consensus 92 C~~ 94 (104)
T PF13473_consen 92 CTM 94 (104)
T ss_dssp -SS
T ss_pred cCC
Confidence 663
No 17
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=84.23 E-value=1.9 Score=38.17 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=31.4
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CC----ccccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GI----AGTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~----~~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
=+++++|+|||+++ +|+=-+.. -. +.-....=.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 36889999999985 77754443 21 11111111122 3467899999999884
No 18
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=83.50 E-value=2.1 Score=37.88 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCc----cccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIA----GTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~----~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
=+++++|+|||+++ +|+=-+.. -.+ .--...=.|| .-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 35889999999985 77754443 211 1111111122 3467899999999884
No 19
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=79.71 E-value=3.7 Score=36.32 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=27.9
Q ss_pred eEEEEEEEEeCCCCCcceeEEEeeeCC-CC----ccccchhhccc-------cccccCCCCEEEEEEE
Q 040836 659 KFTFQIEVENMGKMDGSEVVMVYSKPP-GI----AGTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 659 ~~~v~v~V~NtG~~~G~evvQlYv~~~-~~----~~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
.-+++++|+|||+++ +|+=-+.. -. +.-....=.|| .-|..+||++|+|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 357899999999985 77754444 21 11111111122 3467899999999983
No 20
>PRK13201 ureB urease subunit beta; Reviewed
Probab=79.59 E-value=3.4 Score=38.42 Aligned_cols=51 Identities=24% Similarity=0.133 Sum_probs=31.6
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CC----ccccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GI----AGTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~----~~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
-+++++|+|||+++ ||+=-+.. -. +.--...=.|| .-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 35889999999985 77754444 21 11111111122 3467899999999984
No 21
>PRK13205 ureB urease subunit beta; Reviewed
Probab=79.00 E-value=3.4 Score=39.18 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=32.1
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCc----cccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIA----GTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~----~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
-+++++|+|||+++ ||+=-+.+ -.+ .-....=.|| .-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36889999999985 77755444 211 1111111222 3467899999999985
No 22
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=78.73 E-value=7.1 Score=36.26 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=37.7
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCC-C-----------------Cccccchhhccccc-cccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPP-G-----------------IAGTHIKQVIGYER-VFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~-~-----------------~~~~P~k~L~gF~k-v~L~pGes~~v~~~l~~ 717 (758)
...+++++|+|+++-.- .+++++..- + +...+..+|....+ |.|+|+|+++|+|+|..
T Consensus 27 q~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred CEEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 46788888999877443 344444332 1 11234445555444 67999999999999987
No 23
>PRK13204 ureB urease subunit beta; Reviewed
Probab=78.28 E-value=3.7 Score=39.07 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=31.5
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CC----ccccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GI----AGTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~----~~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
-.++++|+|||+++ ||+=-+.. -. +.-....=.|| .-|..+||++++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35889999999985 77754443 21 11111111122 3467899999999984
No 24
>PRK13198 ureB urease subunit beta; Reviewed
Probab=76.94 E-value=4.3 Score=38.62 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=31.6
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCc----cccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIA----GTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~----~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
=+++++|+|||+++ ||+=-+.. -.+ .-....=.|| .-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 36889999999985 77754444 211 1111111222 3467899999999984
No 25
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=75.84 E-value=3.9 Score=36.08 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=30.4
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCc----cccchhhcc-------ccccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIA----GTHIKQVIG-------YERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~----~~P~k~L~g-------F~kv~L~pGes~~v~~~ 714 (758)
-+++++|+|||+++ +|+=-+.. -.+ .--...-.| =.-|..+||+.|+|++.
T Consensus 20 ~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 20 PTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred cceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 46788899999985 66644332 111 100001111 24577899999999983
No 26
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=70.94 E-value=6.5 Score=39.35 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCc----cccchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIA----GTHIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~----~~P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
=+++++|+|||+++ +|+=-+.+ -.+ .-..+.=.|| .-|..+||++|+|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 35889999999985 67654444 211 1111111222 3467799999999874
No 27
>COG1470 Predicted membrane protein [Function unknown]
Probab=70.68 E-value=20 Score=40.48 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=48.0
Q ss_pred CceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhcccccc-ccCCCCEEEEEEEeccCCCceeEeCCCCeEEcC
Q 040836 657 DYKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERV-FIAAGQSAKVGFTMNACKSLKIVDNAANSLLAS 734 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv-~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~ 734 (758)
++..++.+.|.|+|+.+=+.+ -|=|..| +- ..+.-.+ +| .|+|||+++|.++|+.-.+- .+
T Consensus 396 Gee~~i~i~I~NsGna~LtdI-kl~v~~PqgW----ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~a-----------~a 458 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDI-KLTVNGPQGW----EIEVDES-TIPSLEPGESKTVSLTITVPEDA-----------GA 458 (513)
T ss_pred CccceEEEEEEecCCCcccee-eEEecCCccc----eEEECcc-cccccCCCCcceEEEEEEcCCCC-----------CC
Confidence 345789999999997765554 3555666 31 1133344 55 58999999999998873321 58
Q ss_pred eeEEEEEec
Q 040836 735 GAHTILVGE 743 (758)
Q Consensus 735 G~y~i~vG~ 743 (758)
|+|.|.+-.
T Consensus 459 GdY~i~i~~ 467 (513)
T COG1470 459 GDYRITITA 467 (513)
T ss_pred CcEEEEEEE
Confidence 888888764
No 28
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=70.60 E-value=18 Score=31.34 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=30.5
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccccccCCCCEEEEEEEecc
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~ 717 (758)
.+.++++|.|+. .+.+-|.+. -....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~----~~~~~v~~~~y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSA----AVTFTVYDNAYGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCC----cEEEEEEeCCcCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 688999998644 344444432 111112 6778999999999999954
No 29
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=69.51 E-value=5.8 Score=40.44 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=34.4
Q ss_pred EEEeCCCCCcceeEEEeeeCC-CCc--cc--------cchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEc
Q 040836 665 EVENMGKMDGSEVVMVYSKPP-GIA--GT--------HIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLA 733 (758)
Q Consensus 665 ~V~NtG~~~G~evvQlYv~~~-~~~--~~--------P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~ 733 (758)
++-|.|. |.-+++||-+.+ +.. .. -.+.+.+..++.|.||||-| |.+.---++ +.+
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT----L~Pg~yH~F-------w~e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT----LPPGIYHWF-------WGE 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE----E-TTEEEEE-------EE-
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe----eCCCCeeeE-------Eec
Confidence 5567764 788888888876 321 11 24568889999999999965 666222333 445
Q ss_pred CeeEEEEEec
Q 040836 734 SGAHTILVGE 743 (758)
Q Consensus 734 ~G~y~i~vG~ 743 (758)
+|. ++||.
T Consensus 178 ~g~--vLigE 185 (225)
T PF07385_consen 178 GGD--VLIGE 185 (225)
T ss_dssp TTS--EEEEE
T ss_pred CCC--EEEEe
Confidence 555 66663
No 30
>PRK13986 urease subunit alpha; Provisional
Probab=67.77 E-value=8.1 Score=39.12 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=31.3
Q ss_pred EEEEEEEEeCCCCCcceeEEEeeeCC-CCccc----cchhhccc-------cccccCCCCEEEEEEE
Q 040836 660 FTFQIEVENMGKMDGSEVVMVYSKPP-GIAGT----HIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 660 ~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~----P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
=+++++|+|||+++ +|+=-+.. -.+.+ -...=.|| .-|..+||++|+|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999985 77644444 21111 11111121 3467899999999984
No 31
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=66.56 E-value=20 Score=34.40 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=37.8
Q ss_pred ceEEEEEEEEeCCCCCcceeE---EEeeeC-C--CCccccchhhcccccc------ccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSEVV---MVYSKP-P--GIAGTHIKQVIGYERV------FIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evv---QlYv~~-~--~~~~~P~k~L~gF~kv------~L~pGes~~v~~~l~~ 717 (758)
+++.|..+|||+|+.+=+++. .++=.+ . .....=..++.+|.+- .|+|||++..++.++.
T Consensus 62 ~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 62 ESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred cEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 679999999999987654432 222211 1 1122233445556322 2999999999999874
No 32
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=65.54 E-value=13 Score=34.21 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCC-C-Cccccchhhccccccc-cCCCCEEEEEEEecc
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPP-G-IAGTHIKQVIGYERVF-IAAGQSAKVGFTMNA 717 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~-~-~~~~P~k~L~gF~kv~-L~pGes~~v~~~l~~ 717 (758)
+.+++|+|+|+ -.-.+|+.+... . ....+...|.-+=.++ |+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999999 567788888762 1 1122333455555554 89999999999 554
No 33
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=64.57 E-value=14 Score=33.16 Aligned_cols=59 Identities=14% Similarity=0.014 Sum_probs=34.9
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeee--CC--CCccccchhhccccccccCCCCEEEEEEEeccC
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSK--PP--GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNAC 718 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~--~~--~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~ 718 (758)
..++|+++++|..+..-+. |++.+. .- +++.+ ..-.+-...+.|+|||++++++.|.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~-~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTR-DQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEE-EEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCccc-ccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 5799999999999987443 222221 11 22222 112333456679999999999999983
No 34
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=62.24 E-value=12 Score=34.06 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=32.2
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEe-----eeCC--CC-cccc-c--hhhccc--cccccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVY-----SKPP--GI-AGTH-I--KQVIGY--ERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlY-----v~~~--~~-~~~P-~--k~L~gF--~kv~L~pGes~~v~~~l~~ 717 (758)
...+.+++|+|.|+.+=.--+... ..+. +. ...+ . .....| .+|.|+||++++|+++|+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 347899999999986554433333 1111 11 1111 1 002333 4567899999999999998
No 35
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.97 E-value=50 Score=29.09 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=29.2
Q ss_pred HHHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEE
Q 040836 457 AIDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLV 511 (758)
Q Consensus 457 a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvV 511 (758)
.....+++|+||++++. ....-...+++.++..++|++.+
T Consensus 42 l~~~i~~aD~VIv~t~~---------------vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDY---------------VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCC---------------cChHHHHHHHHHHHHcCCcEEEE
Confidence 34577899999998863 22345667888888888997654
No 36
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=54.62 E-value=28 Score=33.36 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=40.7
Q ss_pred eEEEEEEEEeCCCCCcceeEEEeeeCCCCccccchhhccccccc-cCCCCEEEEEEEecc
Q 040836 659 KFTFQIEVENMGKMDGSEVVMVYSKPPGIAGTHIKQVIGYERVF-IAAGQSAKVGFTMNA 717 (758)
Q Consensus 659 ~~~v~v~V~NtG~~~G~evvQlYv~~~~~~~~P~k~L~gF~kv~-L~pGes~~v~~~l~~ 717 (758)
-+.|.++.+|+++. ++--+-+..+. -..-.++++|.+|. |+||++.++.+-|+-
T Consensus 86 mvsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 86 MVSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred cEEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 47899999999975 44444455441 12345799999996 999999999999986
No 37
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=54.44 E-value=1.1e+02 Score=35.02 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=30.4
Q ss_pred HHcCCCceEEeeccccCC-----cccccCHHHHHHHHhhhcCCCcEEEcC
Q 040836 231 VNEGDVSSVMCSYNRVNG-----IPTCADPKLLNQTIRGDWNFHGYIVSD 275 (758)
Q Consensus 231 i~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gf~G~VvSD 275 (758)
|+++.+ ..|.+.+++.| ..++.++.+++.+|..=+.+ |.-..+
T Consensus 51 iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~~~-g~R~A~ 98 (442)
T TIGR00450 51 KDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCLKS-GARLAQ 98 (442)
T ss_pred eeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHHHc-CCeEcC
Confidence 455555 89999999988 47899999999888754433 443433
No 38
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=53.49 E-value=11 Score=41.33 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=34.3
Q ss_pred HHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCCh--hHHHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 458 IDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPG--FQTELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 458 ~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
.+..++||+||++.|... .+|.+|.++--.. --.++++++.+.+++..|+++. ++|+|+
T Consensus 74 ~~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 356789999999998643 3455664321110 1234556666655534544444 589977
No 39
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=52.78 E-value=91 Score=26.53 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=45.5
Q ss_pred eEEEEEEEEe-CCCCCcceeEEEeeeCC---CCccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEcC
Q 040836 659 KFTFQIEVEN-MGKMDGSEVVMVYSKPP---GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLAS 734 (758)
Q Consensus 659 ~~~v~v~V~N-tG~~~G~evvQlYv~~~---~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~ 734 (758)
.+++++.+-| .....--.-+++|++-. ..+..+. .-.|.||++..|+|.+.. +.. +.+..|.+++..
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~~~i~~i~-------~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~ 75 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQATVHIGSIRQTARIVSID-------KDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFRE 75 (87)
T ss_pred EEEEEEEEEcCCCcccCCCEeEEEEcCCEEEEEEEecc-------HhhccCCCeEEEEEEECC-CCc-EEccCCeEEEEC
Confidence 4667777766 23333334455776654 2222222 256899999999999643 346 456667788877
Q ss_pred eeEEEEEe
Q 040836 735 GAHTILVG 742 (758)
Q Consensus 735 G~y~i~vG 742 (758)
| -++-+|
T Consensus 76 g-~tva~G 82 (87)
T cd03708 76 G-RTKGVG 82 (87)
T ss_pred C-CcEEEE
Confidence 7 566666
No 40
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=52.37 E-value=29 Score=26.07 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCcceeEEEe-eeCCCCccccchhhccccccccCCCCEEEEEEE
Q 040836 663 QIEVENMGKMDGSEVVMVY-SKPPGIAGTHIKQVIGYERVFIAAGQSAKVGFT 714 (758)
Q Consensus 663 ~v~V~NtG~~~G~evvQlY-v~~~~~~~~P~k~L~gF~kv~L~pGes~~v~~~ 714 (758)
+++++|+|+.. .+++ +....+=. ...|.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~----L~I~~v~tsCgCt-----~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP----LVITDVQTSCGCT-----TAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc----EEEEEeeEccCCE-----EeeCCcceECCCCEEEEEEE
Confidence 37889998653 2222 22221111 22355656999999998876
No 41
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=51.68 E-value=41 Score=36.99 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=29.7
Q ss_pred CceEEEEEEEEeCCCCCcceeEEE---------eeeCC-C--Cccccchhhccc------cccccCCCCEEEEEEEec
Q 040836 657 DYKFTFQIEVENMGKMDGSEVVMV---------YSKPP-G--IAGTHIKQVIGY------ERVFIAAGQSAKVGFTMN 716 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~evvQl---------Yv~~~-~--~~~~P~k~L~gF------~kv~L~pGes~~v~~~l~ 716 (758)
+.+++++++|||.|+- .|+| |+... . ....|. +|.+- ..--|+|||++++++++.
T Consensus 262 gR~l~~~l~VtN~g~~----pv~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGDS----PVRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCC----ceEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 3679999999999864 3333 11111 1 112233 55554 222489999999999984
No 42
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=49.32 E-value=44 Score=31.20 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred eEEEEEEEEeCCCC----CcceeEEEeeeCCCCcc-ccchhhccccccccCCCCEEEEEEEecc
Q 040836 659 KFTFQIEVENMGKM----DGSEVVMVYSKPPGIAG-THIKQVIGYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 659 ~~~v~v~V~NtG~~----~G~evvQlYv~~~~~~~-~P~k~L~gF~kv~L~pGes~~v~~~l~~ 717 (758)
.-.+.|++||+|.. .|.=-|++.-..-..+. ...++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 34789999999984 67766777621112111 1222222456788999999998888875
No 43
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=46.27 E-value=48 Score=30.92 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=32.0
Q ss_pred EEEEEEEeCCCCC----cceeEEEeeeCCCC---c-------------ccc-chhhccccccccCCCCEEEEEEEecc
Q 040836 661 TFQIEVENMGKMD----GSEVVMVYSKPPGI---A-------------GTH-IKQVIGYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 661 ~v~v~V~NtG~~~----G~evvQlYv~~~~~---~-------------~~P-~k~L~gF~kv~L~pGes~~v~~~l~~ 717 (758)
+|+|+.+|+|+.+ |.-.|- ..++. + .++ ..+..+..| -|.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTk-liggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTK-VIGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEcc-ccCCCceEEEEEECCC
Confidence 5888999999877 666663 22211 0 011 112222222 2699999999999863
No 44
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=46.05 E-value=14 Score=40.31 Aligned_cols=57 Identities=28% Similarity=0.356 Sum_probs=32.5
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeeec
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
+..+++|+||++.|... .+|.+|.++ -..- .++++++.+..++..+ |++.++|+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~i-vivvtNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVK-VLVIGNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeE-EEEeCCchHHH
Confidence 46789999999988643 345566432 1222 3345555554433343 34446899773
No 45
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=45.62 E-value=1.3e+02 Score=26.41 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=34.6
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccccccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~ 717 (758)
+..+++++++|+.+.+-.=--.+|==+. +-...|. ...++++.|.|+++.+|+..-+.
T Consensus 24 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 24 GLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 5789999999999887665555555556 4333333 35789999999999999887665
No 46
>COG1160 Predicted GTPases [General function prediction only]
Probab=44.58 E-value=55 Score=37.12 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEec
Q 040836 455 PAAIDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMS 514 (758)
Q Consensus 455 ~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~ 514 (758)
+++..++.+||++|+++-.. + .+.+...++.+-+. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~-------Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----E-------GITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----C-------CCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 34667789999999999421 1 13344444555554 467999999883
No 47
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=44.22 E-value=1.9e+02 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=26.9
Q ss_pred HHHcCCCceEEeeccccCC-----cccccCHHHHHHHHhhh
Q 040836 230 CVNEGDVSSVMCSYNRVNG-----IPTCADPKLLNQTIRGD 265 (758)
Q Consensus 230 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e 265 (758)
.++++.+ ..|.+.+++.| ..++.|+.+++.+|..=
T Consensus 58 ~iD~~l~-~~f~~P~S~TGEd~vEi~~HG~~~v~~~il~~l 97 (449)
T PRK05291 58 VIDEVLV-LYFPAPNSFTGEDVVEIQCHGGPAVLNLILELL 97 (449)
T ss_pred ccceEEE-EEecCCCCccCCcEEEEECCCCHHHHHHHHHHH
Confidence 4556655 88888899988 47899999998888643
No 48
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=43.25 E-value=57 Score=30.92 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=21.7
Q ss_pred ccCCCCEEEEEEEeccCCCceeEeCCCCeEEcCeeEEEEEecC
Q 040836 702 FIAAGQSAKVGFTMNACKSLKIVDNAANSLLASGAHTILVGEG 744 (758)
Q Consensus 702 ~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~s 744 (758)
.|+|||+++++|..+. +|.|.++-+--
T Consensus 95 ~I~pGet~TitF~adK----------------pG~Y~y~C~~H 121 (135)
T TIGR03096 95 VIKAGETKTISFKADK----------------AGAFTIWCQLH 121 (135)
T ss_pred EECCCCeEEEEEECCC----------------CEEEEEeCCCC
Confidence 4899999999998874 68888776643
No 49
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=43.05 E-value=32 Score=39.75 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=35.1
Q ss_pred HhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCC
Q 040836 262 IRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCG 310 (758)
Q Consensus 262 LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 310 (758)
|++=+||+|.|+||.++.+...- .....++++.+.---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~--g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVY--GDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEc--CCccCCHHHHHHHHHHhCCCEEeE
Confidence 67778999999999998765432 234567888766666679999874
No 50
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=42.89 E-value=33 Score=26.79 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=17.5
Q ss_pred CceEEEEEEEEeCCCCCccee
Q 040836 657 DYKFTFQIEVENMGKMDGSEV 677 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~ev 677 (758)
++.++.+++|+|+|......|
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v 31 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNV 31 (53)
T ss_pred CCEEEEEEEEEECCCCceEeE
Confidence 478999999999999776543
No 51
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.72 E-value=1.5e+02 Score=29.52 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=50.2
Q ss_pred CceEEEEEEEEeCCCCCcceeEEEee-eCCCCccccchhhccc--cc-cccCCCCEEEEEEEeccCCCceeEeCCCC---
Q 040836 657 DYKFTFQIEVENMGKMDGSEVVMVYS-KPPGIAGTHIKQVIGY--ER-VFIAAGQSAKVGFTMNACKSLKIVDNAAN--- 729 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~evvQlYv-~~~~~~~~P~k~L~gF--~k-v~L~pGes~~v~~~l~~~~~ls~~d~~~~--- 729 (758)
++.++|+++|.|.|+-+..+|.- .= .+|... -.-..|= .+ -.|+||++.+-++.+.+ ....+++-...
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV~l-~D~~fp~~~---F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~~a~Vt 111 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDVKL-TDDSFPPED---FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFTPAVVT 111 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEEEE-ECCCCCccc---cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEccCEEEE
Confidence 46799999999999987777652 22 122100 0001111 11 25899999999999998 56777765532
Q ss_pred eEEcCeeEEEEEecCC
Q 040836 730 SLLASGAHTILVGEGV 745 (758)
Q Consensus 730 ~~~~~G~y~i~vG~ss 745 (758)
+..+.|.=...++.|+
T Consensus 112 Y~~~~~~~~~~~a~Ss 127 (181)
T PF05753_consen 112 YRDSEGAKELQVAYSS 127 (181)
T ss_pred EECCCCCceeEEEEec
Confidence 3344454444455443
No 52
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=40.29 E-value=71 Score=37.06 Aligned_cols=59 Identities=19% Similarity=0.147 Sum_probs=39.0
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCCCCccccchhhc-cccccccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPPGIAGTHIKQVI-GYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~~~~~~P~k~L~-gF~kv~L~pGes~~v~~~l~~ 717 (758)
..-++++.|+|+|...-+.+.-.|.. |....-|..+.. -+-.-.|.|||+..|+|++..
T Consensus 167 ~~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 167 ETNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred CccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 34589999999999988888777754 110111111111 122335899999999999987
No 53
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=40.06 E-value=24 Score=38.34 Aligned_cols=58 Identities=31% Similarity=0.423 Sum_probs=34.4
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCC--ChhHHHHHHHHHHhcCCCEEEEEecCceeeec
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLL--PGFQTELINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~L--p~~q~~Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
+..+++|+||++.|..+ .+|.+|.+|-- -.-..++.+++.+.+++ .+ +++.+||+++.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~i-vlVvtNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AI-VLVVTNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eE-EEEecCcHHHH
Confidence 45789999999998654 45556644311 11124455666665554 33 33447799873
No 54
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=39.89 E-value=34 Score=28.51 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.9
Q ss_pred CceEEEEEEEEeCCCCCccee
Q 040836 657 DYKFTFQIEVENMGKMDGSEV 677 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~ev 677 (758)
++.++.+++|+|+|......|
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv 60 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNV 60 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeE
Confidence 578999999999999886653
No 55
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=39.32 E-value=2.2e+02 Score=25.27 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=40.8
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccccccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~ 717 (758)
+..++++.|+|+.+.+-.=-=.+|==+. +-...|. ...++.+.|.++|+.+|...-+.
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 4688999999999865444444444445 3333333 57899999999999998876654
No 56
>PLN02303 urease
Probab=38.46 E-value=38 Score=41.39 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=31.7
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCC-CCccc----cchhhccc-------cccccCCCCEEEEEEE
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPP-GIAGT----HIKQVIGY-------ERVFIAAGQSAKVGFT 714 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~----P~k~L~gF-------~kv~L~pGes~~v~~~ 714 (758)
+++++|+|||+|+ ||+=-+.. -.+-+ -...=.|| .-|..+|||+|+|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 5889999999985 77755544 21111 11111222 3467899999999985
No 57
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=38.45 E-value=8.1 Score=36.80 Aligned_cols=54 Identities=35% Similarity=0.498 Sum_probs=30.4
Q ss_pred HhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCceeee
Q 040836 460 AAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQT----ELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 460 ~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
..+++|++|++.|... .++.+|.++ -.... ++.+++.+.+++.+++| ..+|+++
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p~~~viv--vtNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAPDAIVIV--VTNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCCccEEEE--eCCcHHH
Confidence 5678999998887542 344455332 12222 34455556565554433 3679876
No 58
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.39 E-value=25 Score=38.45 Aligned_cols=57 Identities=23% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 458 IDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 458 ~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
.+..++||+||++.|... .+|.+|.++ -... .++.+++.+.+++..++ ++.++|+|+
T Consensus 73 ~~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~ii-ivvsNPvD~ 133 (322)
T cd01338 73 NVAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKV-LVVGNPCNT 133 (322)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEE-EEecCcHHH
Confidence 356789999999988643 345566432 2222 23445555544223443 444689977
No 59
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=38.08 E-value=65 Score=24.46 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.5
Q ss_pred HHHHHHcCCCcHHhHHhHHHHHHHHHHHhC
Q 040836 317 TMGAVQQGKIAEADIDTSLRFLYIVLMRLG 346 (758)
Q Consensus 317 l~~av~~g~i~~~~id~av~Ril~~k~~lG 346 (758)
....++.-.-+.+.|+..|..+|.+|..+|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 445566677889999999999999999988
No 60
>PRK05442 malate dehydrogenase; Provisional
Probab=36.70 E-value=23 Score=38.77 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeeec
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
+..++||+||++.|... .++.+|.++ -... .++.+++.+..++..++ ++.++|+|+-
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~ii-ivvsNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKV-LVVGNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEE-EEeCCchHHH
Confidence 56789999999888532 345566432 2222 23445555533223443 3446899873
No 61
>PLN00135 malate dehydrogenase
Probab=36.66 E-value=28 Score=37.89 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=32.1
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHh-cCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADA-AKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~-~~k~vVvVl~~g~P~~l 520 (758)
+..++||+||++.|... .++.+|.++ -... .++++++.+. ++ ..+++ +.++|+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p-~aivi-vvsNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAP-DCKVL-VVANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCC-CeEEE-EeCCcHHH
Confidence 46789999999998643 344555432 1112 3455566653 33 34443 44589977
No 62
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=35.47 E-value=2.2e+02 Score=30.63 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=38.2
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhcccccc----ccCCCCEEEEEEEeccCC
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERV----FIAAGQSAKVGFTMNACK 719 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv----~L~pGes~~v~~~l~~~~ 719 (758)
..+.+=|.++|.|+ ....-.++... .-......-++.|..+ .++||+..++.-.+.+.+
T Consensus 99 ~~~~~LvgftN~g~---~~~~V~~i~aSl~~p~d~~~~iqNfTa~~y~~~V~pg~~aT~~YsF~~~~ 162 (285)
T PF03896_consen 99 EPVKFLVGFTNKGS---EPFTVESIEASLRYPQDYSYYIQNFTAVRYNREVPPGEEATFPYSFTPSE 162 (285)
T ss_pred CeEEEEEEEEeCCC---CCEEEEEEeeeecCccccceEEEeecccccCcccCCCCeEEEEEEEecch
Confidence 45788899999998 23333344332 2222334446666666 379999999998887633
No 63
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.30 E-value=30 Score=37.89 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 458 IDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 458 ~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
.+..+++|+||++.|... .++.+|.++ -... .++.+++.+..+...++++ .++|+|+
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~ 131 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANT 131 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHH
Confidence 356789999999988542 344555432 1222 3445556554323344443 4689986
No 64
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=34.31 E-value=23 Score=39.73 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEecCceeeec
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTE----LINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
+..+++|+||++.|... .++.+|.+ |-..-.+ +.+++.+..++..| |++.++|+|+.
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~d--ll~~N~~I~k~i~~~I~~~a~~~~i-viVVsNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERAD--LLDINGQIFADQGKALNAVASKNCK-VLVVGNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCCeE-EEEcCCcHHHH
Confidence 46789999999888542 34455533 2222223 33444442323343 44556899873
No 65
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=33.63 E-value=29 Score=30.40 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=14.0
Q ss_pred cccccCCCCEEEEEEEecc
Q 040836 699 ERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 699 ~kv~L~pGes~~v~~~l~~ 717 (758)
.+|.|+|||+++|.|-+-.
T Consensus 66 ~~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 66 VRVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp EEEEE-TT-EEEEEEEEEE
T ss_pred EEEEECCCCEEEEEEEEEE
Confidence 4678999999999998754
No 66
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=32.29 E-value=97 Score=34.11 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=31.8
Q ss_pred CceEEEEEEEEeCCCCCcceeEEE---------eeeC---C-CCccccchhhcc--c---cccccCCCCEEEEEEEec
Q 040836 657 DYKFTFQIEVENMGKMDGSEVVMV---------YSKP---P-GIAGTHIKQVIG--Y---ERVFIAAGQSAKVGFTMN 716 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~evvQl---------Yv~~---~-~~~~~P~k~L~g--F---~kv~L~pGes~~v~~~l~ 716 (758)
+-.++++++|||.|+-+ |.| |+.. + -....|. +|.+ - ...-|+|||+|+|+++..
T Consensus 281 GR~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 281 GRALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAK 353 (399)
T ss_pred CcEEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEe
Confidence 35799999999998642 222 1111 0 0112232 2222 1 123489999999998875
No 67
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.84 E-value=30 Score=37.33 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=33.3
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCC--hhHHHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLP--GFQTELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..++||++|++.|... .++.+|.++-.- +--.++.+++.+.+++ .+ |++.++|+++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHH
Confidence 46789999999998643 345566432211 1123455556555443 33 4455689976
No 68
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=30.78 E-value=1.3e+02 Score=31.12 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=32.7
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhcccc-ccccCCCCEEEEEEEec
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYE-RVFIAAGQSAKVGFTMN 716 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~-kv~L~pGes~~v~~~l~ 716 (758)
.++++|+|+|+. .-.+|.-+.+. .....| +.-.= -..|+||+++.|.+...
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~---fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKL---LLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCC---EEEcCCeEEECCCCceEEEEEEC
Confidence 477888999976 47888888754 221111 11111 23589999999987643
No 69
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=30.46 E-value=93 Score=31.50 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=35.6
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccccc--cCCCCEEEEEEEeccCCCceeEeCC
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERVF--IAAGQSAKVGFTMNACKSLKIVDNA 727 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv~--L~pGes~~v~~~l~~~~~ls~~d~~ 727 (758)
..+++..++++. +|+.+-.-+...| .-+.---.-+.+|++-- +++|++++|+|+=. +.+.-||++
T Consensus 7 ~vV~l~Y~l~~~---dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~pe--eAyGe~d~~ 74 (196)
T PRK10737 7 LVVSLAYQVRTE---DGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAN--DAYGQYDEN 74 (196)
T ss_pred CEEEEEEEEEeC---CCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChH--HhcCCCChH
Confidence 578888899883 2443333322223 11111123455666664 69999998776532 345555554
No 70
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=30.36 E-value=1.5e+02 Score=23.89 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhc-CCCEEEEEe
Q 040836 464 ADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAA-KGPVTLVIM 513 (758)
Q Consensus 464 aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~-~k~vVvVl~ 513 (758)
.++|++++-.+. .=|+ -...|..|.+.+.... ++|+|+|++
T Consensus 14 ~~~ilfi~D~Se---~CGy------sie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 14 ADAILFIIDPSE---QCGY------SIEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp -SEEEEEE-TT----TTSS-------HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred cceEEEEEcCCC---CCCC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 577777774221 1111 2367999999998776 789988875
No 71
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=30.20 E-value=3.5e+02 Score=28.52 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=11.9
Q ss_pred hhhcCCCcEEEcCchhhh
Q 040836 263 RGDWNFHGYIVSDCDSIQ 280 (758)
Q Consensus 263 R~e~gf~G~VvSD~~~~~ 280 (758)
=++-||+.+.+.|+..|.
T Consensus 28 ~e~aG~d~i~vGds~~~~ 45 (254)
T cd06557 28 ADEAGVDVILVGDSLGMV 45 (254)
T ss_pred HHHcCCCEEEECHHHHHH
Confidence 356677777777776654
No 72
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.90 E-value=2.6e+02 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCCc
Q 040836 256 KLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCGD 311 (758)
Q Consensus 256 ~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~ 311 (758)
..+.. +|++..|.=.|+.+... . |-+..|+.+|.|++|.+
T Consensus 170 ~~v~~-~k~~~p~~~~I~VEv~t--------------l-eea~~A~~~GaDiI~LD 209 (273)
T PRK05848 170 EFIQH-ARKNIPFTAKIEIECES--------------L-EEAKNAMNAGADIVMCD 209 (273)
T ss_pred HHHHH-HHHhCCCCceEEEEeCC--------------H-HHHHHHHHcCCCEEEEC
Confidence 34443 58888875556666532 2 33567899999999853
No 73
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.38 E-value=42 Score=36.69 Aligned_cols=58 Identities=24% Similarity=0.387 Sum_probs=30.5
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH--HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ--TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q--~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..+++|+||++.|... .++.+|.++.-.... .++.+++.+..+...++++. ++|+|+
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999988543 233444322111111 33445555543323444444 579976
No 74
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=29.32 E-value=41 Score=36.79 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..+++|+||++.|... .++.+|.+ +-... .++.+++.+..++..|+++ .++|+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~--ll~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRD--LLSKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHH
Confidence 46789999999888543 23444432 21222 2345556554323354444 4589987
No 75
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=28.92 E-value=2.2e+02 Score=24.59 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=40.9
Q ss_pred ceEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccccccCCCCEEEEEEEeccCCCceeEeC
Q 040836 658 YKFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDN 726 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~ 726 (758)
..++|.+++.|.+.....-.+++.+... ...... .-..+.+..+....+.+++.. .....|+.
T Consensus 18 ~~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 18 AKVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 3577777889999999999999998877 432211 113334566666666455554 34678877
No 76
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=28.88 E-value=54 Score=35.67 Aligned_cols=55 Identities=29% Similarity=0.412 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..+++|+||++.|... .++.+|.++ -... .++.+++.+.+++ .+ +++..||+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~p~-~i-iivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESCPK-AM-ILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhCCC-eE-EEEecCchhh
Confidence 46789999999998643 345555432 2222 2344555555444 33 4455789984
No 77
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=28.33 E-value=43 Score=36.39 Aligned_cols=55 Identities=33% Similarity=0.418 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..+++|+||++.|... .+|.+|.++ -... .++++++.+.+++ . ++++..||+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~p~-a-~vivvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKACPK-A-LILIISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-e-EEEEccCchhh
Confidence 56789999999998643 344455332 2222 3345556555544 3 34455789976
No 78
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=28.33 E-value=90 Score=28.19 Aligned_cols=60 Identities=12% Similarity=-0.077 Sum_probs=28.6
Q ss_pred ceEEEEEEEEeCCCCCcce-eEEEeeeCC-CCccccchhhc----cccccccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGSE-VVMVYSKPP-GIAGTHIKQVI----GYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~e-vvQlYv~~~-~~~~~P~k~L~----gF~kv~L~pGes~~v~~~l~~ 717 (758)
.-+.|+|+|+|+|+-+-.- ..+..+.+. +..-.+....- .+--..|+||++.+..+-+..
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 4689999999998754321 113344444 32222222111 144567999999887765544
No 79
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=28.15 E-value=4.3e+02 Score=28.41 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhccCCCCccccCCCCCCcceeeeecccccC
Q 040836 157 VGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAY 197 (758)
Q Consensus 157 ~~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~ 197 (758)
++.+...||+-++.. + ....|.+|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~~-~---------~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRER-Y---------PDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhh-C---------CCcEEEecCcCCCch
Confidence 577788888888753 2 123599999999984
No 80
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=27.74 E-value=1.3e+02 Score=28.09 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCEEEEEEc
Q 040836 455 PAAIDAAKNADATVIVAG 472 (758)
Q Consensus 455 ~~a~~~a~~aD~vIv~vG 472 (758)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999998884
No 81
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=27.64 E-value=34 Score=39.10 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHH-hcCCCEEEEEecCceeeec
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVAD-AAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~-~~~k~vVvVl~~g~P~~l~ 521 (758)
+..++||+||++.|... ++|.+|.++ -..- .++.+++.+ +.+ ..+ |++.+||+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p-~~i-vIVVsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADL--LDINGQIFAEQGKALNEVASR-NVK-VIVVGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCC-CeE-EEEcCCcHHHH
Confidence 46789999999888542 345566432 1222 234445554 233 344 44456899773
No 82
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=26.69 E-value=2.2e+02 Score=32.51 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=31.6
Q ss_pred hHHHHHHhhc---CCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeec
Q 040836 454 IPAAIDAAKN---ADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 454 ~~~a~~~a~~---aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
+.+|++.+.. .|++|++=|.. ...+| ++=+...+.++++. ++.|||.- .|-=.|.+
T Consensus 175 i~~al~~~~~~~~~dviii~RGGG--------s~eDL-~~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 175 IVESIELANTKNECDVLIVGRGGG--------SLEDL-WSFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHhhcCCCCCEEEEecCCC--------CHHHh-hhcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 4445554433 69888766532 22222 13356778999985 78897653 35444444
No 83
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=26.60 E-value=2.2e+02 Score=32.51 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=32.9
Q ss_pred ChHHHHHHhhc--CCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeeec
Q 040836 453 MIPAAIDAAKN--ADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 453 ~~~~a~~~a~~--aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
.+.+|++.+.. .|++|++=|.. ...+|. +=++.++++++++ ++.|||.- .|-=.|.+
T Consensus 180 ~i~~al~~~~~~~~Dviii~RGGG--------S~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 180 SIVAAIERANARGEDVLIVARGGG--------SLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHhcCCCCCEEEEecCCC--------CHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 34555655554 59888765532 222221 3356789999986 68897653 35444443
No 84
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=26.51 E-value=1.1e+02 Score=21.03 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCcHHhHHhHHHHHH
Q 040836 315 NFTMGAVQQGKIAEADIDTSLRFLY 339 (758)
Q Consensus 315 ~~l~~av~~g~i~~~~id~av~Ril 339 (758)
..|.+...+|.|+++...+.-++||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 5678889999999999999988886
No 85
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.43 E-value=33 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=19.0
Q ss_pred hccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEEcCeeEEEEEec
Q 040836 695 VIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLLASGAHTILVGE 743 (758)
Q Consensus 695 L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ 743 (758)
|.||.+-+...+.... +++++. ++||+|+|.|=.
T Consensus 14 l~g~d~~W~~~~~~~~-~~~~~~--------------L~~G~Y~l~V~a 47 (66)
T PF07495_consen 14 LEGFDDEWITLGSYSN-SISYTN--------------LPPGKYTLEVRA 47 (66)
T ss_dssp EETTESSEEEESSTS--EEEEES----------------SEEEEEEEEE
T ss_pred EECCCCeEEECCCCcE-EEEEEe--------------CCCEEEEEEEEE
Confidence 6667666654444432 333332 379999999863
No 86
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=25.87 E-value=86 Score=37.63 Aligned_cols=47 Identities=26% Similarity=0.249 Sum_probs=35.1
Q ss_pred HhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCcCCC
Q 040836 262 IRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDLDCG 310 (758)
Q Consensus 262 LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 310 (758)
|.+=+||+|.|+||.++.+-+.- .....++++.+.---.-|.|+.|.
T Consensus 74 lH~f~~w~g~ilTDSGgfQv~s~--g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 74 IHSLIGFDGPIMTDSGSFQLSVY--GDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred hHHHhCCCCCeEecCCceeeeec--CccccCHHHHHHHHHHhCCCEEEE
Confidence 66778999999999998775542 234567888766656679999874
No 87
>PRK05086 malate dehydrogenase; Provisional
Probab=25.66 E-value=56 Score=35.52 Aligned_cols=56 Identities=29% Similarity=0.379 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCCh---hHHHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPG---FQTELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~---~q~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..+++|+||++.|... .++.+|.++ |.. .-.++++++.+.+.+. +|++..||+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~~~~--ivivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTCPKA--CIGIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhCCCe--EEEEccCchHH
Confidence 45578999999999643 233344332 111 2245666676655443 34456789964
No 88
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=25.65 E-value=74 Score=30.82 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.6
Q ss_pred cccCCCCEEEEEEEecc
Q 040836 701 VFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 701 v~L~pGes~~v~~~l~~ 717 (758)
+.|+||+|.+++..++.
T Consensus 116 v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 116 VTLAPGKSGELVVVFTG 132 (158)
T ss_pred eEeCCCCcEEEEEEecC
Confidence 46999999999988874
No 89
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.56 E-value=1.7e+02 Score=28.67 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=28.5
Q ss_pred ChHHHHHHh--hcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 453 MIPAAIDAA--KNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 453 ~~~~a~~~a--~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
..++.++.+ .++|+++|.+|. +.|..++.+.....+.+ |++..|+.++.
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~i~vG~~~d~ 139 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG--VIIGVGGAFDF 139 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEECchhhh
Confidence 344444443 456877777763 35788888887665544 33444555543
No 90
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=24.94 E-value=2.9e+02 Score=26.14 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=39.9
Q ss_pred ceEEEEEEEEeCCCCCcc-eeEEEeeeCC-CC-----ccccchhhccc--cccccCCCCEEEEEEEecc
Q 040836 658 YKFTFQIEVENMGKMDGS-EVVMVYSKPP-GI-----AGTHIKQVIGY--ERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 658 ~~~~v~v~V~NtG~~~G~-evvQlYv~~~-~~-----~~~P~k~L~gF--~kv~L~pGes~~v~~~l~~ 717 (758)
+.+.|+.+++|+++.+=. =.++|-+.+. +. +-.|..-|..- .+..|+||++.++.+.+..
T Consensus 68 ~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 68 GVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 579999999999986432 2345555554 32 33454444433 2445999999999998874
No 91
>PLN02602 lactate dehydrogenase
Probab=24.84 E-value=46 Score=36.85 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..++||+||++.|... .+|.+|.++ -... .++.+++.+.+++ .++ ++..+|+++
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~p~-~iv-ivvtNPvdv 159 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYSPD-TIL-LIVSNPVDV 159 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCCC-eEE-EEecCchHH
Confidence 34789999999988643 345566432 2222 2345555555544 333 334579976
No 92
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=24.63 E-value=51 Score=35.72 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=30.0
Q ss_pred hhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHH----HHHHHHHhcCCCEEEEEecCceeeec
Q 040836 461 AKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTE----LINKVADAAKGPVTLVIMSAGAVDIN 521 (758)
Q Consensus 461 a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~k~vVvVl~~g~P~~l~ 521 (758)
++++|++|+++|... .++.+|.+ |-....+ .++++.+.+++ .+ +++..||+++-
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~--l~~~N~~iv~~i~~~I~~~~p~-~~-iIv~tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSRED--LLSMNAGIVREVTGRIMEHSPN-PI-IVVVSNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHHHCCC-eE-EEEecCcHHHH
Confidence 578999999999643 22334422 2222333 44455554444 33 33446798873
No 93
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=24.51 E-value=57 Score=29.58 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=33.1
Q ss_pred ccccCCCCCCCCceeeccCCCCccccccccccccccccccCCCCCCCCcccccccccCCCceEEEEEEEEeCCCCCccee
Q 040836 598 VYPFGYGLSYTQFKYKVASSPKSVDIKLDKDQQCRDINYTVGTNKPPCAAVLIDDVKCKDYKFTFQIEVENMGKMDGSEV 677 (758)
Q Consensus 598 lypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~V~NtG~~~G~ev 677 (758)
.|-.-||+.||+|....-.....+.+-++. +++.=-..++|+|+|+..-.=-
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~v~V~~----------------------------~~~vEi~~l~l~N~~~~~r~L~ 82 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELTVFVPP----------------------------DDPVEIRRLRLTNTSNRPRRLS 82 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEEEE--T----------------------------TSSEEEEEEEEEE-SSS-EEEE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEEEEEcC----------------------------CCCEEEEEEEEEECcCCcEEEE
Confidence 588899999999997753311111111110 0122235799999999876655
Q ss_pred EEEeeeC
Q 040836 678 VMVYSKP 684 (758)
Q Consensus 678 vQlYv~~ 684 (758)
+=-|+..
T Consensus 83 vtsy~E~ 89 (110)
T PF06165_consen 83 VTSYAEW 89 (110)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5555554
No 94
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=24.45 E-value=43 Score=36.18 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..++||+||++.|... .+|.+|.++ -..- .++.+++.+.+++ .+ |++.++|+++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKSGFD-GI-FLVATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEeCCHHHH
Confidence 46789999999988543 345566432 1222 3345556555443 43 4555789876
No 95
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=23.58 E-value=3.5e+02 Score=27.29 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=31.2
Q ss_pred eEEEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhccccc----------cccCCCCEEEEEEEecc
Q 040836 659 KFTFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYER----------VFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 659 ~~~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~k----------v~L~pGes~~v~~~l~~ 717 (758)
..++++.|+=++. ++.=+|+|+--+| +.. +++-. |..+ ..|+|||..+|+|+|.+
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~-~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTS-TLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSE-EEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCE-EEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 4667777775554 4577777776667 422 22211 3333 35899999999999987
No 96
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=23.26 E-value=90 Score=35.05 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCEEEEEec-Cceeeeccccc-------CCCccEEEEccCCCchhHHHHHHHHhcC
Q 040836 494 TELINKVADAAKGPVTLVIMS-AGAVDINFAKN-------NPKIKSILWVGYPGEEGGRAIADVIFGK 553 (758)
Q Consensus 494 ~~Li~~va~~~~k~vVvVl~~-g~P~~l~~~~~-------~~~v~AiL~a~~~G~~~g~AlAdVL~G~ 553 (758)
.++|++..+.+++|||+|..| |+++...++.. ...|+++|...-|=.-+.+|+..+++|+
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 456777766668899988887 76765443321 1368888876666444668999999998
No 97
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=23.04 E-value=2.7e+02 Score=29.38 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.3
Q ss_pred hHHHHHHhhcCCEEEEEEcCCC
Q 040836 454 IPAAIDAAKNADATVIVAGLDL 475 (758)
Q Consensus 454 ~~~a~~~a~~aD~vIv~vG~~~ 475 (758)
+++..+..+++|++|+++|...
T Consensus 92 l~~~~~~l~~ad~~iiTLGtae 113 (251)
T PF08885_consen 92 LEEVREALEEADVFIITLGTAE 113 (251)
T ss_pred HHHHHHHHHhCCEEEEeCCcHH
Confidence 3455677899999999999753
No 98
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.64 E-value=51 Score=35.75 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHH----HHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQT----ELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..++||+||++.|... .+|.+|.-++|-..-. ++++++.+.+++ .+ +++..+|+|+
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~-~i-~ivvsNPvDv 124 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVTKE-AV-IILITNPLDI 124 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEecCcHHH
Confidence 56789999999988643 2333321122323333 344555555444 33 3445779987
No 99
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=22.62 E-value=75 Score=34.46 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=30.0
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCC--hhHHHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLP--GFQTELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..+++|++|+++|... .++.+|.++-.- ..-.+.++++.+.+++ .+++ +.++|+++
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~-~~vi-v~~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPD-TKIL-VVTNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEE-EeCCchHH
Confidence 34789999999998643 344444322000 0112344445554444 3333 33579875
No 100
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=22.50 E-value=62 Score=35.23 Aligned_cols=55 Identities=27% Similarity=0.401 Sum_probs=31.6
Q ss_pred HHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 459 DAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 459 ~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
+..++||+||++.|... .+|.+|.++ -... .++++++.+.+++ .+ |++.++|+++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dl--l~~N~~i~~~i~~~i~~~~~~-~~-vivvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDL--VEKNLKIFKSIVGEVMASGFD-GI-FLVASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEccCcHHH
Confidence 45689999999988643 345555332 1222 2345555554444 33 3455689976
No 101
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=22.32 E-value=2.1e+02 Score=30.20 Aligned_cols=84 Identities=13% Similarity=-0.001 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCCceEEeeccccCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcC
Q 040836 225 LPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAG 304 (758)
Q Consensus 225 ~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 304 (758)
.-.+++.+.|++ +||+--..|..----.|++.|. +++++- +=-|+-|.+ ....+-+.+|++-|
T Consensus 149 v~a~rLed~Gc~-aVMPlgsPIGSg~Gl~n~~~l~-~i~e~~--~vpVivdAG-------------Igt~sDa~~AmElG 211 (267)
T CHL00162 149 MLAKHLEDIGCA-TVMPLGSPIGSGQGLQNLLNLQ-IIIENA--KIPVIIDAG-------------IGTPSEASQAMELG 211 (267)
T ss_pred HHHHHHHHcCCe-EEeeccCcccCCCCCCCHHHHH-HHHHcC--CCcEEEeCC-------------cCCHHHHHHHHHcC
Confidence 345777888865 9999766663222234777774 567664 345777754 22345578899999
Q ss_pred CCcCCCc----------chHHHHHHHHHcCC
Q 040836 305 LDLDCGD----------YYTNFTMGAVQQGK 325 (758)
Q Consensus 305 ~D~~~~~----------~~~~~l~~av~~g~ 325 (758)
+|=++.. .+.+.++.||+.|+
T Consensus 212 aDgVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 212 ASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred CCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 9987641 24456666676664
No 102
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=22.29 E-value=3.4e+02 Score=24.77 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=36.7
Q ss_pred CceEEEEEEEEeCCCCCcceeEEEeeeCC---C-CccccchhhccccccccCCCCEEEEEEEeccCCCceeEeCCCCeEE
Q 040836 657 DYKFTFQIEVENMGKMDGSEVVMVYSKPP---G-IAGTHIKQVIGYERVFIAAGQSAKVGFTMNACKSLKIVDNAANSLL 732 (758)
Q Consensus 657 ~~~~~v~v~V~NtG~~~G~evvQlYv~~~---~-~~~~P~k~L~gF~kv~L~pGes~~v~~~l~~~~~ls~~d~~~~~~~ 732 (758)
++.++++++++..-+..+ +.+.+.-. + .+-.-.-.+.+ .++.+..|++.+++++++. . |
T Consensus 34 ge~~~i~i~~~~~~~i~~---~~~~~~i~~~~g~~v~~~~t~~~~-~~~~~~~~g~~~~~~~i~~-~-L----------- 96 (142)
T PF14524_consen 34 GEPIRIRIDYEVNEDIDD---PVFGFAIRDSDGQRVFGTNTYDSG-FPIPLSEGGTYEVTFTIPK-P-L----------- 96 (142)
T ss_dssp TSEEEEEEEEEESS-EEE---EEEEEEEEETT--EEEEEEHHHHT---EEE-TT-EEEEEEEEE----B-----------
T ss_pred CCEEEEEEEEEECCCCCc---cEEEEEEEcCCCCEEEEECccccC-ccccccCCCEEEEEEEEcC-c-c-----------
Confidence 367888888887555544 33333322 1 11111112222 2233333899999999996 3 4
Q ss_pred cCeeEEEEEec
Q 040836 733 ASGAHTILVGE 743 (758)
Q Consensus 733 ~~G~y~i~vG~ 743 (758)
.+|+|.|.++=
T Consensus 97 ~~G~Y~i~v~l 107 (142)
T PF14524_consen 97 NPGEYSISVGL 107 (142)
T ss_dssp -SEEEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 69999999886
No 103
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=22.23 E-value=4.1e+02 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.120 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhccCCCCccccCCCCCCcceeeeecccccC
Q 040836 158 GRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAY 197 (758)
Q Consensus 158 ~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~ 197 (758)
+..+..+|+-.++. . -.+.+|=|+.||.
T Consensus 2 AT~t~~~v~~a~~~-~-----------~~i~~TRKt~Pg~ 29 (169)
T PF01729_consen 2 ATATRRMVDAAKGT-K-----------IRIADTRKTIPGL 29 (169)
T ss_dssp HHHHHHHHHHTTTS-S-----------SEEEEGSGS-TTT
T ss_pred hhHHHHHHHHhCCC-C-----------EEEeecCCCCccc
Confidence 55667777777765 3 2388888999983
No 104
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=22.09 E-value=94 Score=34.70 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=46.5
Q ss_pred HhhhcCCCcEEEcCchhhhhh--h------------------------hh---------cccccCCHHHHHHHHHHcCCC
Q 040836 262 IRGDWNFHGYIVSDCDSIQTI--V------------------------ES---------HKFLNDTKEDAVARVLKAGLD 306 (758)
Q Consensus 262 LR~e~gf~G~VvSD~~~~~~~--~------------------------~~---------~~~~~~~~~ea~~~al~AG~D 306 (758)
|.+=+||+|-|+||.+..+-. . .. .+....++++...---.-|.|
T Consensus 76 lH~fm~w~gpilTDSGgfQv~SL~~~~v~~~~~~~~~~~~~~~~~~i~e~Gv~F~s~~dG~~~~ltPe~~i~~Q~~iGsD 155 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGAD 155 (372)
T ss_pred HHHHhCCCCcccccCcceeEEEeccccchhhhccccccccccccceecCCCeEEecCCCCCceeeCHHHHHHHHHHHCCC
Confidence 556789999999998754431 1 00 011125666666555566999
Q ss_pred cCCCcchHHHHHHHHHcCCCcHHhHHhHHHHHHHHHHH
Q 040836 307 LDCGDYYTNFTMGAVQQGKIAEADIDTSLRFLYIVLMR 344 (758)
Q Consensus 307 ~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~ 344 (758)
+.|.-.. .-.-..+.+++.+|+.|-+++-.+
T Consensus 156 I~m~LDe-------~~~~~~~~~~~~~sv~rT~rW~~r 186 (372)
T PRK01008 156 IIIPLDE-------LLPFHADPTYFLQSCQRTYVWEKR 186 (372)
T ss_pred EEEEccc-------cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8874110 001135678899999999887544
No 105
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.99 E-value=91 Score=32.40 Aligned_cols=84 Identities=18% Similarity=0.096 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCCceEEeeccccCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcC
Q 040836 225 LPFEMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAG 304 (758)
Q Consensus 225 ~pF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 304 (758)
.-.+++.+.|++ +||+--..|..----.|++.|. ++|++. +=-||-|.+- + ++.+ +.+|++-|
T Consensus 135 v~akrL~d~Gca-avMPlgsPIGSg~Gi~n~~~l~-~i~~~~--~vPvIvDAGi-G-----------~pSd-aa~AMElG 197 (247)
T PF05690_consen 135 VLAKRLEDAGCA-AVMPLGSPIGSGRGIQNPYNLR-IIIERA--DVPVIVDAGI-G-----------TPSD-AAQAMELG 197 (247)
T ss_dssp HHHHHHHHTT-S-EBEEBSSSTTT---SSTHHHHH-HHHHHG--SSSBEEES---------------SHHH-HHHHHHTT
T ss_pred HHHHHHHHCCCC-EEEecccccccCcCCCCHHHHH-HHHHhc--CCcEEEeCCC-C-----------CHHH-HHHHHHcC
Confidence 345677788875 9999877664222345777775 667777 4445657741 1 2333 57899999
Q ss_pred CCcCCCc----------chHHHHHHHHHcCC
Q 040836 305 LDLDCGD----------YYTNFTMGAVQQGK 325 (758)
Q Consensus 305 ~D~~~~~----------~~~~~l~~av~~g~ 325 (758)
+|=++.. .+.+.+..||+.|+
T Consensus 198 ~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 198 ADAVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp -SEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CceeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 9987642 24566777777764
No 106
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=21.91 E-value=1.7e+02 Score=30.14 Aligned_cols=54 Identities=7% Similarity=0.099 Sum_probs=33.9
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCC-CCccccchhhcccccc-ccCCCCEEEEEEEec
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPP-GIAGTHIKQVIGYERV-FIAAGQSAKVGFTMN 716 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~-~~~~~P~k~L~gF~kv-~L~pGes~~v~~~l~ 716 (758)
.++++|+|+|+. .-.+|..+.+. .....+...+.-.=-+ .|+||+++.|.|-..
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578889999985 68999988753 1110111112222223 489999999987654
No 107
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=21.84 E-value=4.3e+02 Score=34.40 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=37.1
Q ss_pred CCceEEEEEEEEeCCCCCcceeEEEeeeCC-C-Ccc--------------ccchhhcccc--cc----ccCCCCEEEEEE
Q 040836 656 KDYKFTFQIEVENMGKMDGSEVVMVYSKPP-G-IAG--------------THIKQVIGYE--RV----FIAAGQSAKVGF 713 (758)
Q Consensus 656 ~~~~~~v~v~V~NtG~~~G~evvQlYv~~~-~-~~~--------------~P~k~L~gF~--kv----~L~pGes~~v~~ 713 (758)
+|+..+++++++|+|+++=+.+- +-+.+. . ... .-..+|.-+. |+ .|+|||+.+++|
T Consensus 797 eGE~~~~~ItL~N~S~~pvd~l~-~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~Pg~~~~~~~ 875 (1185)
T PF08626_consen 797 EGEKQTFTITLRNTSSVPVDFLS-FSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPPGESATFTV 875 (1185)
T ss_pred CCcEEEEEEEEEECCccccceEE-EEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCCCCEEEEEE
Confidence 35788999999999977665544 333322 1 000 0111222221 11 799999999999
Q ss_pred Eecc
Q 040836 714 TMNA 717 (758)
Q Consensus 714 ~l~~ 717 (758)
+++.
T Consensus 876 ~~~~ 879 (1185)
T PF08626_consen 876 EVDG 879 (1185)
T ss_pred EecC
Confidence 9875
No 108
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=21.76 E-value=5e+02 Score=22.06 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=39.3
Q ss_pred eEEEEEEEEeC------CCCCcceeEEEeeeCCCCccccchhhcccccc-ccCCCCEEEEEEEeccCCCceeEeCCCCeE
Q 040836 659 KFTFQIEVENM------GKMDGSEVVMVYSKPPGIAGTHIKQVIGYERV-FIAAGQSAKVGFTMNACKSLKIVDNAANSL 731 (758)
Q Consensus 659 ~~~v~v~V~Nt------G~~~G~evvQlYv~~~~~~~~P~k~L~gF~kv-~L~pGes~~v~~~l~~~~~ls~~d~~~~~~ 731 (758)
.+++++.+-+. ....--..+++++.-.. .+- ++.-+.+- .|.|||+..|.|.+.. .+ ..+..+.++
T Consensus 5 ~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~---~~~-~i~~l~~~~~i~~g~~~~v~l~l~~--pv-~~~~~~rf~ 77 (90)
T cd03707 5 KFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTD---VTG-SITLPEGTEMVMPGDNVKMTVELIH--PI-ALEKGLRFA 77 (90)
T ss_pred EEEEEEEEEcccccCCCCcccCCceeEEEeccCe---EEE-EEEccCcccccCCCCEEEEEEEECC--cE-EEecCCEEE
Confidence 46777777664 34445555667666441 011 12222333 4999999999999985 35 334445566
Q ss_pred E
Q 040836 732 L 732 (758)
Q Consensus 732 ~ 732 (758)
+
T Consensus 78 l 78 (90)
T cd03707 78 I 78 (90)
T ss_pred E
Confidence 5
No 109
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=21.52 E-value=1.7e+02 Score=31.88 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHHHHHcCCCceEEeecccc-CCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCC
Q 040836 227 FEMCVNEGDVSSVMCSYNRV-NGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGL 305 (758)
Q Consensus 227 F~~ai~~g~~~~vM~sy~~v-ng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~ 305 (758)
.+++.+.|. .+||+--.-| .|.+.+ |++.|+.+... .+--|+-|.+ .+..+-+.+|++-|+
T Consensus 211 a~~l~~~g~-~avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdAG-------------Ig~~sda~~AmelGa 272 (326)
T PRK11840 211 AKRLEDAGA-VAVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDAG-------------VGTASDAAVAMELGC 272 (326)
T ss_pred HHHHHhcCC-EEEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeCC-------------CCCHHHHHHHHHcCC
Confidence 356666675 4899843333 566666 99999776554 5566888864 233455788999999
Q ss_pred CcCCCc----------chHHHHHHHHHcCC
Q 040836 306 DLDCGD----------YYTNFTMGAVQQGK 325 (758)
Q Consensus 306 D~~~~~----------~~~~~l~~av~~g~ 325 (758)
|=++.. .+.+++..||+.|+
T Consensus 273 dgVL~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 273 DGVLMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CEEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 977641 24566777777764
No 110
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=21.07 E-value=61 Score=35.01 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=30.9
Q ss_pred HhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhH----HHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 460 AAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQ----TELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 460 ~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
.++++|++|++.|... .++.+|.++ -..- .++.+++.+.+++ .+ |++.++|+++
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~~-~~-vivvsNP~d~ 122 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGFD-GI-FLVASNPVDV 122 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCCC-eE-EEEecChHHH
Confidence 4579999999998643 345566332 1222 2344455554443 33 4455689976
No 111
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.02 E-value=3.2e+02 Score=26.72 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=26.2
Q ss_pred hcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHHhcCCCEEEEEecCceeee
Q 040836 462 KNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVADAAKGPVTLVIMSAGAVDI 520 (758)
Q Consensus 462 ~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~~~~k~vVvVl~~g~P~~l 520 (758)
..+|+++|.+|. +.|+.++.+..+..+.++ ++..|+.++.
T Consensus 98 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~v--~~~vG~~~d~ 137 (171)
T cd06533 98 SGADILFVGLGA-----------------PKQELWIARHKDRLPVPV--AIGVGGSFDF 137 (171)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCCE--EEEeceeeEe
Confidence 467988888873 458889988876654433 3444656654
No 112
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=20.94 E-value=1.4e+02 Score=28.74 Aligned_cols=25 Identities=16% Similarity=0.476 Sum_probs=21.6
Q ss_pred hhhccccccccCCCCEEEEEEEecc
Q 040836 693 KQVIGYERVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 693 k~L~gF~kv~L~pGes~~v~~~l~~ 717 (758)
..|.+-+++.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 3577788889999999999999986
No 113
>PRK13556 azoreductase; Provisional
Probab=20.77 E-value=2.2e+02 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHHhhcCCEEEEEEcCCCCcccCCCCCCCCCCChhHHHHHHHHHH
Q 040836 455 PAAIDAAKNADATVIVAGLDLSVEAEGKDRVDLLLPGFQTELINKVAD 502 (758)
Q Consensus 455 ~~a~~~a~~aD~vIv~vG~~~~~e~Eg~Dr~~l~Lp~~q~~Li~~va~ 502 (758)
++..+..+.||.+|++.=. + ++.+|..-..+|+.+..
T Consensus 81 ~~~~~~l~~AD~iVi~~P~---y--------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPL---W--------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHCCEEEEeccc---c--------ccCCcHHHHHHHHHHhc
Confidence 3445678899988876521 1 45678877778888764
No 114
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=20.75 E-value=7.4e+02 Score=26.51 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhccCCCCccccCCCCCCcceeeeecccccC
Q 040836 157 VGRYAINYVRGLQDVEGVEYHRDSDSRPLKISACCKHYAAY 197 (758)
Q Consensus 157 ~~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~v~a~~KHF~g~ 197 (758)
++.+...||+-+.+. + ....|.+|-|.+||.
T Consensus 105 IAT~T~~~V~~~~~~-~---------~~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKKI-S---------PMAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHhc-C---------CCCEEEecCCCCCCh
Confidence 577788889888764 2 123499999999984
No 115
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=20.64 E-value=74 Score=32.75 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=39.3
Q ss_pred HHHHHHcCCCceEEeeccccCCccc-ccCHHHHHHHHhhhcCCCcEEEcCchh
Q 040836 227 FEMCVNEGDVSSVMCSYNRVNGIPT-CADPKLLNQTIRGDWNFHGYIVSDCDS 278 (758)
Q Consensus 227 F~~ai~~g~~~~vM~sy~~vng~pa-~~s~~ll~~lLR~e~gf~G~VvSD~~~ 278 (758)
|+.|++... .+||++||.-.|.|. +.....+|.-|.+-.++-|+.+=|-.-
T Consensus 158 ~k~Al~~nA-aavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiI 209 (224)
T COG2003 158 FKEALKYNA-AAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHII 209 (224)
T ss_pred HHHHHHhcc-hhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEE
Confidence 688998875 599999999988544 334456788899999998887777543
No 116
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=20.38 E-value=1.8e+02 Score=30.63 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=34.7
Q ss_pred EEEEEEEeCCCCCcceeEEEeeeCCCCccccch----hhcccccc-ccCCCCEEEEEEEec
Q 040836 661 TFQIEVENMGKMDGSEVVMVYSKPPGIAGTHIK----QVIGYERV-FIAAGQSAKVGFTMN 716 (758)
Q Consensus 661 ~v~v~V~NtG~~~G~evvQlYv~~~~~~~~P~k----~L~gF~kv-~L~pGes~~v~~~l~ 716 (758)
.++++|+|+|+. .-.||..+.+......|.+ .+.-.==+ .|+||+.+.|.|...
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 578888999986 5899998864321222221 13333333 389999999987654
No 117
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.35 E-value=2.2e+02 Score=29.56 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=51.7
Q ss_pred HHHHHcCCCceEEeeccccCCcccccCHHHHHHHHhhhcCCCcEEEcCchhhhhhhhhcccccCCHHHHHHHHHHcCCCc
Q 040836 228 EMCVNEGDVSSVMCSYNRVNGIPTCADPKLLNQTIRGDWNFHGYIVSDCDSIQTIVESHKFLNDTKEDAVARVLKAGLDL 307 (758)
Q Consensus 228 ~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~ 307 (758)
++..+.|++ +||+--..|..----.|++-| .+++++. +==||-|.+- .++.+ ++.+++-|+|-
T Consensus 145 rrLee~Gca-avMPl~aPIGSg~G~~n~~~l-~iiie~a--~VPviVDAGi------------G~pSd-Aa~aMElG~Da 207 (262)
T COG2022 145 RRLEEAGCA-AVMPLGAPIGSGLGLQNPYNL-EIIIEEA--DVPVIVDAGI------------GTPSD-AAQAMELGADA 207 (262)
T ss_pred HHHHhcCce-EeccccccccCCcCcCCHHHH-HHHHHhC--CCCEEEeCCC------------CChhH-HHHHHhcccce
Confidence 445556765 999976666322223477777 4778886 6667778752 12223 56789999998
Q ss_pred CCCc----------chHHHHHHHHHcCC
Q 040836 308 DCGD----------YYTNFTMGAVQQGK 325 (758)
Q Consensus 308 ~~~~----------~~~~~l~~av~~g~ 325 (758)
+|.. .+.+.+.-||+.|+
T Consensus 208 VL~NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 208 VLLNTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred eehhhHhhccCChHHHHHHHHHHHHHhH
Confidence 8752 24456667777775
No 118
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=20.33 E-value=3.1e+02 Score=28.28 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCcCCCcchHHHHHHHHHcCCCcHHhHHhHHHHHHHHHHHh-CCCCCCcccccCCCCCCCCHHHHHHHHH
Q 040836 295 DAVARVLKAGLDLDCGDYYTNFTMGAVQQGKIAEADIDTSLRFLYIVLMRL-GYFDGSPQYKNLGKNNICNPQHIELAAE 373 (758)
Q Consensus 295 ea~~~al~AG~D~~~~~~~~~~l~~av~~g~i~~~~id~av~Ril~~k~~l-Glfd~~~~~~~~~~~~v~~~~~~~la~~ 373 (758)
|....|++||.||+-...| + .-+.+|+..... -||.+-.+. -|+. +-+..-.-++.+.-++..+||.+
T Consensus 72 ~~f~~aV~AGAdliEIGNf-D---sFY~qGr~f~a~------eVL~Lt~~tR~LLP-~~~LsVTVPHiL~ld~Qv~LA~~ 140 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIGNF-D---SFYAQGRRFSAE------EVLALTRETRSLLP-DITLSVTVPHILPLDQQVQLAED 140 (242)
T ss_pred HHHHHHHHhCCCEEEecch-H---HHHhcCCeecHH------HHHHHHHHHHHhCC-CCceEEecCccccHHHHHHHHHH
Confidence 5567899999999854332 2 225667765432 344433222 1222 11111111345556788899999
Q ss_pred HHhhceEEecCCCCC
Q 040836 374 AARQGIVLLKNDNGA 388 (758)
Q Consensus 374 ~a~eSiVLLKN~~~~ 388 (758)
+...++-+++-|++.
T Consensus 141 L~~~GaDiIQTEGgt 155 (242)
T PF04481_consen 141 LVKAGADIIQTEGGT 155 (242)
T ss_pred HHHhCCcEEEcCCCC
Confidence 999999999988754
No 119
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.16 E-value=2.1e+02 Score=30.85 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=34.1
Q ss_pred eEEEEEEEEeCCCCCcceeEEEeeeCC-CC---c----cccc----hhhcccc--ccccCCCCEEEEEEEecc
Q 040836 659 KFTFQIEVENMGKMDGSEVVMVYSKPP-GI---A----GTHI----KQVIGYE--RVFIAAGQSAKVGFTMNA 717 (758)
Q Consensus 659 ~~~v~v~V~NtG~~~G~evvQlYv~~~-~~---~----~~P~----k~L~gF~--kv~L~pGes~~v~~~l~~ 717 (758)
....+++|+|..+.+=+ |+|.=+-| +. + ..|. .+-.|.- ++.|+|||+++++|....
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v 313 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEV 313 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEE
Confidence 46789999999965544 55555555 32 1 1121 1222222 345788888888887654
Done!