BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040837
(276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain
168) GN=yuiD PE=4 SV=1
Length = 158
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 81 LLYGKDFDLKAAFQAGGFPSTHSSCVVAAATGLALERGFSDSFFGLTVVYAGLVMYDAQG 140
+ + D GG PS+HS+ V A +TG+ALE G S F ++ ++A + M+DA G
Sbjct: 28 FIVSRKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATG 87
Query: 141 VRREVGVHAKALNR 154
VRR G A +N+
Sbjct: 88 VRRHAGEQATVINK 101
>sp|Q505D1|ANR28_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1
Length = 1053
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 149 AKALNRHLAKAQVNSTVSKDRDNLIDGQEGAPSTSNMECLGSLLANETKSYASNSTNASP 208
A+ L L + VN+T SK R L A T ++ECL LL+ + +++ST +P
Sbjct: 804 AEMLIDSLGASIVNATDSKGRTPL----HAAAFTDHVECLQLLLSQNAQVNSADSTGKTP 859
Query: 209 LLLRSSKKTRQTEEMVLPFGLAD 231
L++ + T EM++ AD
Sbjct: 860 LMMAAENGQTNTVEMLVSSASAD 882
>sp|Q9UVY5|CPSKS_GIBFU Ent-kaur-16-ene synthase OS=Gibberella fujikuroi GN=cps PE=2 SV=1
Length = 952
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 61/140 (43%), Gaps = 30/140 (21%)
Query: 95 AGGFPSTHSSCVVAAAT----GLALERGFSDSFFGLTVVYAGLVMYDAQGV------RRE 144
+G FP+TH C AT G L++ D GL+ + + D GV +
Sbjct: 270 SGTFPTTHFECSWIIATLLKVGFTLKQIDGDGLRGLSTILLE-ALRDENGVIGFAPRTAD 328
Query: 145 VGVHAKALNRHLAKAQVNSTVSKD--------RDNLID-GQEGAPS-TSNMECLGSLLAN 194
V AKAL LA + VN VS D +D+ G E PS TSN+ L SLL
Sbjct: 329 VDDTAKAL---LALSLVNQPVSPDIMIKVFEGKDHFTTFGSERDPSLTSNLHVLLSLLKQ 385
Query: 195 ETKSYASNSTNASPLLLRSS 214
SN + P +L+++
Sbjct: 386 ------SNLSQYHPQILKTT 399
>sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Eustoma
exaltatum subsp. russellianum GN=SPY PE=2 SV=1
Length = 918
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 119 FSDSFFGLTVVYAGLVMYDAQGVRREVGVHAKALNRHLAKAQVN-STVSKDRDNL 172
+SD+ + L V Y ++ +D + E+ H N H A+A N + KDRDNL
Sbjct: 271 YSDAMYNLGVAYGEMLKFDMAIIFDELAFH---FNPHCAEACNNLGVIYKDRDNL 322
>sp|Q10VT8|PSAB_TRIEI Photosystem I P700 chlorophyll a apoprotein A2 OS=Trichodesmium
erythraeum (strain IMS101) GN=psaB PE=3 SV=1
Length = 738
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 27 LDRFRNHPSRRTCKFTCL-LHVGFEDIAQVVHNKVLIAAG-------VSAAIGQLSKPVT 78
LDR NH + + L +GF + VHN V++A G + Q + +
Sbjct: 413 LDRVLNHKEAIISHLSWVSLFLGFHTLGLYVHNDVMVAFGTPEKQILIEPVFAQFVQAAS 472
Query: 79 GSLLYGKD 86
G LYG D
Sbjct: 473 GKALYGMD 480
>sp|B5FA79|IF2_VIBFM Translation initiation factor IF-2 OS=Vibrio fischeri (strain MJ11)
GN=infB PE=3 SV=1
Length = 893
Score = 32.3 bits (72), Expect = 3.5, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 139 QGVRREVGVHAKALNRHLAKAQVNSTVSKDRDNLIDGQEGAPSTSNMECLGSLLANETKS 198
+ + E+G L + + A +N KD D++ +G++ SLL + K
Sbjct: 7 KALSEEIGTPVDRLLQQFSDAGINK---KDGDSVSEGEKQ-----------SLLVHLKKE 52
Query: 199 YASNSTNASPLLLRSSKKTRQTEEMVLPFGLADDVQEGSEKK 240
+ S +ASP L +KTR T + G + DVQ KK
Sbjct: 53 HGSADDSASPTRLTLQRKTRSTLSVAGSGGKSKDVQVEVRKK 94
>sp|Q7V511|PSAB_PROMM Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus
marinus (strain MIT 9313) GN=psaB PE=3 SV=1
Length = 749
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 41 FTCLLHVGFEDIAQVVHNKVLIAAG-------VSAAIGQLSKPVTGSLLYGKDFDLKAA- 92
+ C+L +GF +A +HN V+IA G V Q + +G ++YG D L A
Sbjct: 437 WVCML-LGFHTLALYLHNDVVIAFGTPEKQILVEPIFAQFIQAASGKVMYGLDVLLANAN 495
Query: 93 ----FQAGGFPSTH 102
A G P H
Sbjct: 496 SAPSLAAAGMPGDH 509
>sp|A2CC72|PSAB_PROM3 Photosystem I P700 chlorophyll a apoprotein A2 OS=Prochlorococcus
marinus (strain MIT 9303) GN=psaB PE=3 SV=1
Length = 749
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 41 FTCLLHVGFEDIAQVVHNKVLIAAG-------VSAAIGQLSKPVTGSLLYGKDFDLKAA- 92
+ C+L +GF +A +HN V+IA G V Q + +G ++YG D L A
Sbjct: 437 WVCML-LGFHTLALYLHNDVVIAFGTPEKQILVEPIFAQFIQAASGKVMYGLDVLLANAN 495
Query: 93 ----FQAGGFPSTH 102
A G P H
Sbjct: 496 SAPSLAAAGMPGDH 509
>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5
Length = 1053
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 156 LAKAQVNSTVSKDRDNLIDGQEGAPSTSNMECLGSLLANETKSYASNSTNASPLLLRSSK 215
L + VN+T SK R L A T ++ECL LL++ + + +ST +PL++ +
Sbjct: 811 LGASIVNATDSKGRTPL----HAAAFTDHVECLQLLLSHNAQVNSVDSTGKTPLMMAAEN 866
Query: 216 KTRQTEEMVL 225
T EM++
Sbjct: 867 GQTNTVEMLV 876
>sp|Q3A6P0|RL16_PELCD 50S ribosomal protein L16 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rplP PE=3 SV=1
Length = 141
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 109 AATGLALERGFSDSFFGLTVVYAGLVMYDAQGVRREVGVHAKALNRHLAKAQVNSTVSKD 168
A T + +G DS+ + V+ G+++Y+ QGV +EV A L H + V +D
Sbjct: 79 AETRMGKGKGSPDSW--VAVIKPGMMLYEMQGVDKEVACEALRLAAHKLPMKTKIVVRED 136
Query: 169 RDN 171
N
Sbjct: 137 VAN 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,807,589
Number of Sequences: 539616
Number of extensions: 3521786
Number of successful extensions: 9684
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 9674
Number of HSP's gapped (non-prelim): 28
length of query: 276
length of database: 191,569,459
effective HSP length: 116
effective length of query: 160
effective length of database: 128,974,003
effective search space: 20635840480
effective search space used: 20635840480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)