Query 040837
Match_columns 276
No_of_seqs 121 out of 349
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 12:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02681 DUF212: Divergent PAP 100.0 5.1E-62 1.1E-66 412.6 13.5 141 55-269 1-141 (141)
2 COG1963 Uncharacterized protei 100.0 3.3E-59 7.2E-64 397.7 13.2 150 50-276 2-151 (153)
3 cd03383 PAP2_diacylglycerolkin 98.5 4.4E-06 9.5E-11 68.1 12.4 52 55-116 5-59 (109)
4 cd03394 PAP2_like_5 PAP2_like_ 98.2 9.1E-06 2E-10 64.2 8.4 55 60-119 8-62 (106)
5 cd03388 PAP2_SPPase1 PAP2_like 97.7 0.00035 7.6E-09 58.5 10.0 53 61-116 39-98 (151)
6 PRK09597 lipid A 1-phosphatase 97.7 0.00067 1.5E-08 61.0 11.6 61 61-121 83-144 (190)
7 cd03392 PAP2_like_2 PAP2_like_ 97.6 0.001 2.2E-08 56.4 11.7 51 62-115 69-120 (182)
8 cd03382 PAP2_dolichyldiphospha 97.6 0.0013 2.9E-08 55.8 12.0 20 253-272 139-158 (159)
9 cd03391 PAP2_containing_2_like 97.5 0.00098 2.1E-08 56.9 9.9 53 63-118 55-113 (159)
10 cd03393 PAP2_like_3 PAP2_like_ 97.4 0.0028 6E-08 51.3 10.9 52 60-114 18-76 (125)
11 KOG3146 Dolichyl pyrophosphate 97.4 0.0014 2.9E-08 60.5 9.8 24 252-275 152-175 (228)
12 cd01610 PAP2_like PAP2_like pr 97.4 0.0036 7.8E-08 47.4 10.5 54 63-119 11-74 (122)
13 cd03389 PAP2_lipid_A_1_phospha 97.3 0.0038 8.2E-08 54.3 11.7 24 252-275 162-185 (186)
14 cd03395 PAP2_like_4 PAP2_like_ 97.0 0.0085 1.8E-07 51.1 10.8 24 252-275 150-173 (177)
15 cd03390 PAP2_containing_1_like 97.0 0.0054 1.2E-07 53.2 9.7 24 252-275 169-192 (193)
16 PF01569 PAP2: PAP2 superfamil 97.0 0.0073 1.6E-07 47.1 9.1 29 95-123 48-76 (129)
17 cd03385 PAP2_BcrC_like PAP2_li 97.0 0.023 5E-07 47.0 12.4 22 252-273 122-143 (144)
18 PLN02525 phosphatidic acid pho 96.9 0.0064 1.4E-07 58.9 10.0 49 64-115 44-103 (352)
19 cd03381 PAP2_glucose_6_phospha 96.7 0.019 4.2E-07 52.8 10.8 22 252-273 130-151 (235)
20 cd03384 PAP2_wunen PAP2, wunen 96.5 0.038 8.3E-07 46.7 10.6 21 252-272 129-149 (150)
21 COG0671 PgpB Membrane-associat 96.5 0.047 1E-06 44.5 10.6 24 252-275 187-210 (232)
22 smart00014 acidPPc Acid phosph 96.5 0.028 6.1E-07 44.2 9.0 50 63-115 3-64 (116)
23 PRK10699 phosphatidylglyceroph 96.3 0.07 1.5E-06 49.6 12.0 24 252-275 206-229 (244)
24 PLN02731 Putative lipid phosph 95.9 0.099 2.2E-06 50.6 11.3 22 253-274 239-260 (333)
25 cd03396 PAP2_like_6 PAP2_like_ 95.6 0.21 4.5E-06 43.6 11.4 25 252-276 173-197 (197)
26 PLN02250 lipid phosphate phosp 95.2 0.22 4.8E-06 47.8 10.8 22 253-274 221-242 (314)
27 PLN02715 lipid phosphate phosp 93.5 0.92 2E-05 44.0 11.1 22 253-274 245-266 (327)
28 cd03380 PAP2_like_1 PAP2_like_ 92.1 1.9 4.2E-05 37.8 10.3 24 94-117 141-164 (209)
29 PRK11837 undecaprenyl pyrophos 91.9 0.66 1.4E-05 41.4 7.3 70 61-135 65-140 (202)
30 cd03397 PAP2_acid_phosphatase 88.2 4.9 0.00011 36.5 9.7 21 252-272 194-214 (232)
31 KOG3030 Lipid phosphate phosph 68.4 4.8 0.0001 39.0 3.1 22 253-274 238-259 (317)
32 KOG2822 Sphingoid base-phospha 68.3 5.1 0.00011 40.2 3.3 53 96-150 157-215 (407)
33 cd03386 PAP2_Aur1_like PAP2_li 63.8 7.4 0.00016 33.6 3.1 40 94-135 115-154 (186)
34 PF14378 PAP2_3: PAP2 superfam 42.2 34 0.00073 29.5 3.7 45 97-142 127-171 (191)
35 cd03398 PAP2_haloperoxidase PA 38.2 32 0.0007 31.0 3.1 27 94-120 143-169 (232)
36 PF10261 Scs3p: Inositol phosp 34.8 20 0.00044 32.8 1.3 21 253-273 218-238 (238)
37 PRK11837 undecaprenyl pyrophos 31.8 45 0.00097 29.8 2.9 24 250-273 145-169 (202)
38 PF01034 Syndecan: Syndecan do 28.6 19 0.00041 27.8 0.0 16 257-272 9-24 (64)
39 PF10389 CoatB: Bacteriophage 27.6 55 0.0012 23.8 2.2 23 252-274 18-40 (46)
40 PF04286 DUF445: Protein of un 27.5 44 0.00096 30.6 2.2 16 260-275 348-363 (367)
41 PRK11212 hypothetical protein; 22.9 1.1E+02 0.0023 28.1 3.7 41 52-92 101-143 (210)
42 TIGR00697 conserved hypothetic 21.6 1.4E+02 0.0029 27.0 4.1 34 52-85 94-129 (202)
43 PRK14748 kdpF potassium-transp 20.3 1.5E+02 0.0032 19.9 3.0 20 256-275 3-23 (29)
No 1
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=100.00 E-value=5.1e-62 Score=412.61 Aligned_cols=141 Identities=41% Similarity=0.627 Sum_probs=127.8
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhhhhcCccchhhhhccCCCCchhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 040837 55 VVHNKVLIAAGVSAAIGQLSKPVTGSLLYGKDFDLKAAFQAGGFPSTHSSCVVAAATGLALERGFSDSFFGLTVVYAGLV 134 (276)
Q Consensus 55 l~~N~~L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~l~~sGGMPSSHSA~V~aLataIGl~~G~~S~~FAiA~vfA~IV 134 (276)
|++|++|++|++||++||++|++++ ++++|+|||+++|+||||||||||+|+||||+||+++||+||+||+|++||+||
T Consensus 1 l~~N~~l~~a~~a~~~AQ~iK~~~~-~~~~r~~d~~~~~~sGGMPSSHSA~V~aLat~ig~~~G~~S~~FAia~v~a~IV 79 (141)
T PF02681_consen 1 LLSNKVLIAALIAWFIAQFIKVFIN-YLKERKWDWRRFFSSGGMPSSHSATVSALATAIGLQEGFDSPLFAIAAVFALIV 79 (141)
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHH-HHHhCcccHHHHhhcCCCCchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Confidence 5799999999999999999999997 678899999999999999999999999999999999999999999999999999
Q ss_pred hccccchhhhhhhhHHHHHHHHHhhhhccccccCCCccccCCCCCCCCCchhhhccccccccccccCCCCCCCchhhhcc
Q 040837 135 MYDAQGVRREVGVHAKALNRHLAKAQVNSTVSKDRDNLIDGQEGAPSTSNMECLGSLLANETKSYASNSTNASPLLLRSS 214 (276)
Q Consensus 135 MYDA~GVRr~aG~qA~vLN~Li~~~~~~~~~~~~~~~l~~s~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~~~~s~ 214 (276)
||||+||||++|+||++||+|+++++..+.
T Consensus 80 myDA~GVRr~aG~qA~~lN~l~~~~~~~~~-------------------------------------------------- 109 (141)
T PF02681_consen 80 MYDAMGVRRAAGKQAKVLNQLIEELEEEHQ-------------------------------------------------- 109 (141)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHhhhc--------------------------------------------------
Confidence 999999999999999999999999864310
Q ss_pred ccccccccccccCCCcchhhccccccccccccccccCCCChhHHHHHHHHHHHHH
Q 040837 215 KKTRQTEEMVLPFGLADDVQEGSEKKVDNSIMFKESIGHTEVEVVAGALLGFLVS 269 (276)
Q Consensus 215 ~~~r~~~~~~~~~g~~~~~~e~~e~~~~~~~~LKE~lGHTpvEVlaGalLGiiVa 269 (276)
. + ..+..+||||.+||||+||++|++||++||
T Consensus 110 -----------------~--~----~~~~~~~LKE~lGHtp~EV~~G~llGi~vA 141 (141)
T PF02681_consen 110 -----------------S--E----PPIQEKKLKELLGHTPLEVFAGALLGIVVA 141 (141)
T ss_pred -----------------c--c----cchhhhcccccCCCCHHHHHHHHHHHHhhC
Confidence 0 0 001237899999999999999999999985
No 2
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=3.3e-59 Score=397.67 Aligned_cols=150 Identities=36% Similarity=0.594 Sum_probs=137.7
Q ss_pred hhHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhcCccchhhhhccCCCCchhHHHHHHHHHHHHHHhCCCCchHHHHHH
Q 040837 50 EDIAQVVHNKVLIAAGVSAAIGQLSKPVTGSLLYGKDFDLKAAFQAGGFPSTHSSCVVAAATGLALERGFSDSFFGLTVV 129 (276)
Q Consensus 50 ~~i~~l~~N~~L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~l~~sGGMPSSHSA~V~aLataIGl~~G~~S~~FAiA~v 129 (276)
.++.++|+|.+|++|++||+.||++|++++ ++++||+||+.+++||||||||||+|+||+|++|+++|||||+||||++
T Consensus 2 ~~~~~if~n~~llsal~a~~~AQvIKv~I~-~~~~rk~~~~~~~sTGGMPSsHSA~VtALat~ial~~G~dS~lFaiA~v 80 (153)
T COG1963 2 QDLMEIFTNTPLLSALVAILLAQVIKVLIE-LIRTRKLNVTLLFSTGGMPSSHSALVTALATSIALTEGLDSPLFAIAAV 80 (153)
T ss_pred chHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHhccccceeeeecCCCCchHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 578999999999999999999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccchhhhhhhhHHHHHHHHHhhhhccccccCCCccccCCCCCCCCCchhhhccccccccccccCCCCCCCch
Q 040837 130 YAGLVMYDAQGVRREVGVHAKALNRHLAKAQVNSTVSKDRDNLIDGQEGAPSTSNMECLGSLLANETKSYASNSTNASPL 209 (276)
Q Consensus 130 fA~IVMYDA~GVRr~aG~qA~vLN~Li~~~~~~~~~~~~~~~l~~s~~~~~~~~~~e~~~~~~~~e~~~~~~~~~~~~~~ 209 (276)
||+||||||.||||++|+||++||+|++++... .+
T Consensus 81 faiIvm~DA~GVRr~aG~QA~iLN~l~~~~~~e---------------------------------~~------------ 115 (153)
T COG1963 81 FAIIVMYDATGVRRSAGVQARILNQLIEELVNE---------------------------------KK------------ 115 (153)
T ss_pred HHHHHhhhhhhHHHhccchHHHHHHHHHHHHHh---------------------------------hc------------
Confidence 999999999999999999999999999996421 00
Q ss_pred hhhccccccccccccccCCCcchhhccccccccccccccccCCCChhHHHHHHHHHHHHHHHHHHhC
Q 040837 210 LLRSSKKTRQTEEMVLPFGLADDVQEGSEKKVDNSIMFKESIGHTEVEVVAGALLGFLVSLAVSAIM 276 (276)
Q Consensus 210 ~~~s~~~~r~~~~~~~~~g~~~~~~e~~e~~~~~~~~LKE~lGHTpvEVlaGalLGiiVal~~~~~~ 276 (276)
+ +..++|||.+||||+||++|.++||++++++|+++
T Consensus 116 -------------------------~------~~~~~lKellGH~p~eV~~G~~lGI~i~~i~~~~~ 151 (153)
T COG1963 116 -------------------------D------FDKKRLKELLGHTPLEVFAGLLLGILIAWIFYAFF 151 (153)
T ss_pred -------------------------c------CCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 0 11256999999999999999999999999998764
No 3
>cd03383 PAP2_diacylglycerolkinase PAP2_like proteins, diacylglycerol_kinase like sub-family. In some prokaryotes, PAP2_like phosphatase domains appear fused to E. coli DAGK-like trans-membrane diacylglycerol kinase domains. The cellular function of these architectures remains to be determined.
Probab=98.45 E-value=4.4e-06 Score=68.07 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=37.7
Q ss_pred HhcCHH---HHHHHHHHHHHHHHHHHHHhhhhcCccchhhhhccCCCCchhHHHHHHHHHHHHHH
Q 040837 55 VVHNKV---LIAAGVSAAIGQLSKPVTGSLLYGKDFDLKAAFQAGGFPSTHSSCVVAAATGLALE 116 (276)
Q Consensus 55 l~~N~~---L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~l~~sGGMPSSHSA~V~aLataIGl~ 116 (276)
+-+|++ +.+=+++.++.+++|.++. +.|-. .+||||.|++...++++.+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~i~~~lK~~~~---r~RP~-------~~sFPSgHt~~a~a~a~~l~~~ 59 (109)
T cd03383 5 IGESPPHVTFVSLLIVIIVVVILKAYFG---RGTPL-------EGGMPSGHAAIAFSIATAISLI 59 (109)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHhC---CCCCC-------CCCCChHHHHHHHHHHHHHHHH
Confidence 344554 4555668889999998764 34432 3689999999999999887764
No 4
>cd03394 PAP2_like_5 PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=98.20 E-value=9.1e-06 Score=64.17 Aligned_cols=55 Identities=29% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCccchhhhhccCCCCchhHHHHHHHHHHHHHHhCC
Q 040837 60 VLIAAGVSAAIGQLSKPVTGSLLYGKDFDLKAAFQAGGFPSTHSSCVVAAATGLALERGF 119 (276)
Q Consensus 60 ~L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~l~~sGGMPSSHSA~V~aLataIGl~~G~ 119 (276)
.+.+.+++.++.+++|.++. +.|-.+.. -...+|||.|++...++++.+....+.
T Consensus 8 ~~~~~~~~~~~~~~lK~~~~---r~RP~~~~--~~~~sfPSgHa~~a~~~~~~~~~~~~~ 62 (106)
T cd03394 8 LAEAAALTAAVTEGLKFAVG---RARPDGSN--NGYRSFPSGHTASAFAAATFLQYRYGW 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCCCCC--CCCCccCcHHHHHHHHHHHHHHHHHcc
Confidence 34566778888888898764 33432222 567799999999999999888877654
No 5
>cd03388 PAP2_SPPase1 PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second messenger in the cell, and extracellularly by binding to G-protein coupled receptors of the endothelial differentiation gene family.
Probab=97.71 E-value=0.00035 Score=58.48 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCccch---hhh----hccCCCCchhHHHHHHHHHHHHHH
Q 040837 61 LIAAGVSAAIGQLSKPVTGSLLYGKDFDL---KAA----FQAGGFPSTHSSCVVAAATGLALE 116 (276)
Q Consensus 61 L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~---~~l----~~sGGMPSSHSA~V~aLataIGl~ 116 (276)
+.+.+++..+.+++|.++. +.|-... ... -..=||||.|++...++++.+.+.
T Consensus 39 ~~~~~~~~~~~~~lK~~~~---r~RP~~~~~~~~~~~~~~~~~SFPSgH~~~a~~~~~~l~~~ 98 (151)
T cd03388 39 VVVLALGMYIGQFIKDLFC---LPRPSSPPVVRLTMSSAALEYGFPSTHAMNATAISFYLLIY 98 (151)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCCcCCCchhhhhccccCCCCCCChHHHHHHHHHHHHHHHH
Confidence 4455567778889998875 3332221 111 233489999999998888877753
No 6
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=97.66 E-value=0.00067 Score=60.98 Aligned_cols=61 Identities=18% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh-cCccchhhhhccCCCCchhHHHHHHHHHHHHHHhCCCC
Q 040837 61 LIAAGVSAAIGQLSKPVTGSLLY-GKDFDLKAAFQAGGFPSTHSSCVVAAATGLALERGFSD 121 (276)
Q Consensus 61 L~~Al~a~~iAQ~iK~~i~~~~~-~r~~d~~~l~~sGGMPSSHSA~V~aLataIGl~~G~~S 121 (276)
+.+.+.+.++.+++|..++...- +-+.+.+.--.+-+|||.|+++..+.++.+...+++..
T Consensus 83 ~~al~~~~ll~~~LK~~~~R~~~~~~r~~~~p~~~~~SFPSGHt~~af~~a~~l~~~~~~~~ 144 (190)
T PRK09597 83 ANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFNMPSGHSSMVGLAVAFLMRRYSFKK 144 (190)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHchhH
Confidence 34555566677778877652100 01112221112358999999999888777666666654
No 7
>cd03392 PAP2_like_2 PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=97.62 E-value=0.001 Score=56.45 Aligned_cols=51 Identities=20% Similarity=0.006 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCccchhh-hhccCCCCchhHHHHHHHHHHHHH
Q 040837 62 IAAGVSAAIGQLSKPVTGSLLYGKDFDLKA-AFQAGGFPSTHSSCVVAAATGLAL 115 (276)
Q Consensus 62 ~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~-l~~sGGMPSSHSA~V~aLataIGl 115 (276)
.+.+.+.++.+++|.++. +.|-..... --...+|||.|++...+++..+.+
T Consensus 69 ~~~~~~~~~~~~lK~~~~---r~RP~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~ 120 (182)
T cd03392 69 LALLGGGALNTLLKLLVQ---RPRPPLHLLVPEGGYSFPSGHAMGATVLYGFLAY 120 (182)
T ss_pred HHHHHHHHHHHHHHHHhc---CCCCCCcccCCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 344567788888998864 333222211 124568999999998888766654
No 8
>cd03382 PAP2_dolichyldiphosphatase PAP2_like proteins, dolichyldiphosphatase subfamily. Dolichyldiphosphatase is a membrane-associated protein located in the endoplasmic reticulum and hydrolyzes dolichyl pyrophosphate, as well as dolichylmonophosphate at a low rate. The enzyme is necessary for maintaining proper levels of dolichol-linked oligosaccharides and protein N-glycosylation, and might play a role in re-utilization of the glycosyl carrier lipid for additional rounds of lipid intermediate biosynthesis after its release during protein N-glycosylation reactions.
Probab=97.59 E-value=0.0013 Score=55.84 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAV 272 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~ 272 (276)
|+|.+|++|.++|++++++.
T Consensus 139 H~~~DVl~G~~lG~~~~~~~ 158 (159)
T cd03382 139 HTVSQVVVGAIVGILLGILW 158 (159)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 9
>cd03391 PAP2_containing_2_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_2. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to eukaryota, lacks functional characterization and may act as a membrane-associated phosphatidic acid phosphatase.
Probab=97.50 E-value=0.00098 Score=56.87 Aligned_cols=53 Identities=15% Similarity=-0.045 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCccch----hhhh--ccCCCCchhHHHHHHHHHHHHHHhC
Q 040837 63 AAGVSAAIGQLSKPVTGSLLYGKDFDL----KAAF--QAGGFPSTHSSCVVAAATGLALERG 118 (276)
Q Consensus 63 ~Al~a~~iAQ~iK~~i~~~~~~r~~d~----~~l~--~sGGMPSSHSA~V~aLataIGl~~G 118 (276)
+.+++.++.+++|..+. +.|-+.. .... ..-+|||.|++...++++.+.+...
T Consensus 55 ~~~~~~~~~~~lK~~~~---r~RP~~~~~~~~~~~~~~~~SFPSGHa~~a~a~a~~l~~~~~ 113 (159)
T cd03391 55 GLLLDIITVAILKALVR---RRRPAYNSPDMLDYVAVDKYSFPSGHASRAAFVARFLLNHLV 113 (159)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCCCCCccchhccCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 33445567788887753 3333321 1111 2348999999999888887776543
No 10
>cd03393 PAP2_like_3 PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=97.40 E-value=0.0028 Score=51.34 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCccchh-------hhhccCCCCchhHHHHHHHHHHHH
Q 040837 60 VLIAAGVSAAIGQLSKPVTGSLLYGKDFDLK-------AAFQAGGFPSTHSSCVVAAATGLA 114 (276)
Q Consensus 60 ~L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~-------~l~~sGGMPSSHSA~V~aLataIG 114 (276)
.+++.+++.++.+++|.++. +.|-.... .--...+|||.|+++..++.+.+.
T Consensus 18 ~~~~~~~~~~~~~~lK~~~~---r~RP~~~~~~~~~~~~~~~~~sFPSgHa~~~~~~~~~~~ 76 (125)
T cd03393 18 LGLALCASGYLNAALKEVFK---IPRPFTYDGIQAIYEESAGGYGFPSGHAQTSATFWGSLM 76 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHC---CCCcCCCcccchhccCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 56677888889999998763 33322211 113457899999998766655544
No 11
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=97.37 E-value=0.0014 Score=60.45 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAI 275 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~ 275 (276)
=||-.||++|+++|.+++.+-|++
T Consensus 152 yHt~sQVv~G~ivG~l~g~~Wf~~ 175 (228)
T KOG3146|consen 152 YHTLSQVVVGAIVGGLVGILWFYL 175 (228)
T ss_pred hccHHHHHHHHHhhhhHHHHHHHH
Confidence 399999999999999999886654
No 12
>cd01610 PAP2_like PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.
Probab=97.36 E-value=0.0036 Score=47.44 Aligned_cols=54 Identities=24% Similarity=0.098 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCccchhhh----------hccCCCCchhHHHHHHHHHHHHHHhCC
Q 040837 63 AAGVSAAIGQLSKPVTGSLLYGKDFDLKAA----------FQAGGFPSTHSSCVVAAATGLALERGF 119 (276)
Q Consensus 63 ~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~l----------~~sGGMPSSHSA~V~aLataIGl~~G~ 119 (276)
......++.+.+|.+.. +.|-+..... -...+|||.|++...++++.+....+-
T Consensus 11 ~~~~~~~~~~~~k~~~~---~~rP~~~~~~~~~~~~~~~~~~~~sfPSgH~~~~~~~~~~l~~~~~~ 74 (122)
T cd01610 11 ALLAGLLLTGVLKYLFG---RPRPYFLLRCGPDGDPLLLTEGGYSFPSGHAAFAFALALFLALLLPR 74 (122)
T ss_pred HHHHHHHHHHHHHHHhC---CCCCChHHhcCCccchhhhcCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 33444457888897743 3333333222 235899999999999999998876553
No 13
>cd03389 PAP2_lipid_A_1_phosphatase PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.
Probab=97.33 E-value=0.0038 Score=54.28 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=22.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAI 275 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~ 275 (276)
-|.|..|++|+++|++++.++|..
T Consensus 162 ~H~~sDVl~G~~lG~~~~~~~~~~ 185 (186)
T cd03389 162 AHYPSDVIAGSLLGAVTALALYQR 185 (186)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999998864
No 14
>cd03395 PAP2_like_4 PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=97.04 E-value=0.0085 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=20.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAI 275 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~ 275 (276)
=|-|..|++|+++|++++.+.+.+
T Consensus 150 ~H~psDVl~G~~lG~~~~~~~~~~ 173 (177)
T cd03395 150 VHYPGDVIAGALIGIISGLLFYLL 173 (177)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999877643
No 15
>cd03390 PAP2_containing_1_like PAP2, subfamily similar to human phosphatidic_acid_phosphatase_type_2_domain_containing_1. Most likely membrane-associated phosphatidic acid phosphatases. Plant members of this group are constitutively expressed in many tissues and exhibit both diacylglycerol pyrophosphate phosphatase activity as well as phosphatidate (PA) phosphatase activity, they may have a more generic housekeeping role in lipid metabolism.
Probab=97.03 E-value=0.0054 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAI 275 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~ 275 (276)
=|-|..|++|+++|+++++++|..
T Consensus 169 ~H~~sDVlaG~~lG~~~a~~~~~~ 192 (193)
T cd03390 169 RHHFSDVIAGSLIGLIIAYLSYRQ 192 (193)
T ss_pred ccCHHHHHHHHHHHHHHHHheeEe
Confidence 488999999999999999988754
No 16
>PF01569 PAP2: PAP2 superfamily This family includes the following Prosite family; InterPro: IPR000326 This entry represents type 2 phosphatidic acid phosphatase (PAP2; 3.1.3.4 from EC) enzymes, such as phosphatidylglycerophosphatase B 3.1.3.27 from EC from Escherichia coli. PAP2 enzymes have a core structure consisting of a 5-helical bundle, where the beginning of the third helix binds the cofactor []. PAP2 enzymes catalyse the dephosphorylation of phosphatidate, yielding diacylglycerol and inorganic phosphate []. In eukaryotic cells, PAP activity has a central role in the synthesis of phospholipids and triacylglycerol through its product diacylglycerol, and it also generates and/or degrades lipid-signalling molecules that are related to phosphatidate. Other related enzymes have a similar core structure, including haloperoxidases such as bromoperoxidase (contains one core bundle, but forms a dimer), chloroperoxidases (contains two core bundles arranged as in other family dimers), bacitracin transport permease from Bacillus licheniformis, glucose-6-phosphatase from rat. The vanadium-dependent haloperoxidases exclusively catalyse the oxidation of halides, and act as histidine phosphatases, using histidine for the nucleophilic attack in the first step of the reaction []. Amino acid residues involved in binding phosphate/vanadate are conserved between the two families, supporting a proposal that vanadium passes through a tetrahedral intermediate during the reaction mechanism.; GO: 0003824 catalytic activity, 0016020 membrane; PDB: 1QI9_B 1IW8_A 1EOI_A 1D2T_A 1QHB_D 1UP8_C 2IPB_A 1VNS_A 1VNF_A 1VNE_A ....
Probab=96.99 E-value=0.0073 Score=47.06 Aligned_cols=29 Identities=31% Similarity=0.226 Sum_probs=22.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHhCCCCch
Q 040837 95 AGGFPSTHSSCVVAAATGLALERGFSDSF 123 (276)
Q Consensus 95 sGGMPSSHSA~V~aLataIGl~~G~~S~~ 123 (276)
.++|||.|++...+.++.+....+.....
T Consensus 48 ~~sfPSgH~~~~~~~~~~l~~~~~~~~~~ 76 (129)
T PF01569_consen 48 FNSFPSGHAAIAAAFAFFLAYYLGSRGWI 76 (129)
T ss_dssp S-SSS-HHHHHHHHHHHHHHHHCCCCHHH
T ss_pred CCcCcchhhhhHHHHHhhhhhhhhccccc
Confidence 35999999999999999988887766654
No 17
>cd03385 PAP2_BcrC_like PAP2_like proteins, BcrC_like subfamily. Several members of this family have been annotated as bacitracin transport permeases, as it was suspected that they form the permease component of an ABC transporter system. It was shown, however, that BcrC from Bacillus subtilis posesses undecaprenyl pyrophosphate (UPP) phospatase activity, and it is hypothesized that it competes with bacitracin for UPP, increasing the cell's resistance to bacitracin.
Probab=96.97 E-value=0.023 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~ 273 (276)
=|-|..|++|+++|++.++++|
T Consensus 122 ~H~~sDVl~G~~lg~~~~~~~~ 143 (144)
T cd03385 122 VHYPLDMLGAALVAVLSALLVF 143 (144)
T ss_pred CccHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999998876
No 18
>PLN02525 phosphatidic acid phosphatase family protein
Probab=96.91 E-value=0.0064 Score=58.89 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCcc-ch-hhhh--------cc-CCCCchhHHHHHHHHHHHHH
Q 040837 64 AGVSAAIGQLSKPVTGSLLYGKDF-DL-KAAF--------QA-GGFPSTHSSCVVAAATGLAL 115 (276)
Q Consensus 64 Al~a~~iAQ~iK~~i~~~~~~r~~-d~-~~l~--------~s-GGMPSSHSA~V~aLataIGl 115 (276)
-.++.++.|++|-++. +-|-. .. .++. .. =||||+||+..++++..+.+
T Consensus 44 l~~~~~l~~~lKd~v~---rPRP~~pp~~ri~~~~~~~~~a~eYsFPSgHt~nA~av~~~ll~ 103 (352)
T PLN02525 44 MAFCDYVGNCIKDVVS---APRPSCPPVRRVTATKDEEENAMEYGLPSSHTLNTVCLSGYLLH 103 (352)
T ss_pred HHHHHHHHHHHHHhhc---CCCcCCcchhhhhcccccccCCCCCCCChHHHHHHHHHHHHHHH
Confidence 3445577899998864 22322 11 1221 11 28999999999999876654
No 19
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=96.68 E-value=0.019 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~ 273 (276)
=|.|.+|++|.++|++++.++.
T Consensus 130 vHfpsDVlaG~~lGi~~~~~~~ 151 (235)
T cd03381 130 AHFPHQVIAGVISGIAVAETFS 151 (235)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999988754
No 20
>cd03384 PAP2_wunen PAP2, wunen subfamily. Most likely a family of membrane associated phosphatidic acid phosphatases. Wunen is a drosophila protein expressed in the central nervous system, which provides repellent activity towards primordial germ cells (PGCs), controls the survival of PGCs and is essential in the migration process of these cells towards the somatic gonadal precursors.
Probab=96.50 E-value=0.038 Score=46.67 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=18.9
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAV 272 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~ 272 (276)
=|.|.+|++|+++|+++++++
T Consensus 129 ~H~~sDviaG~~lG~~~~~~~ 149 (150)
T cd03384 129 KHHWSDVLAGALLGSVIALFL 149 (150)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 499999999999999998764
No 21
>COG0671 PgpB Membrane-associated phospholipid phosphatase [Lipid metabolism]
Probab=96.46 E-value=0.047 Score=44.47 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAI 275 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~ 275 (276)
-|.|..|++|.++|++++++.+..
T Consensus 187 vH~~~DVi~G~~~g~~~~~~~~~~ 210 (232)
T COG0671 187 VHYPSDVIGGALLGALAALLLLLL 210 (232)
T ss_pred cccchHHHhhHHHHHHHHHHHHHH
Confidence 699999999999999998887643
No 22
>smart00014 acidPPc Acid phosphatase homologues.
Probab=96.45 E-value=0.028 Score=44.16 Aligned_cols=50 Identities=28% Similarity=0.159 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCccc-----------hhh-hhccCCCCchhHHHHHHHHHHHHH
Q 040837 63 AAGVSAAIGQLSKPVTGSLLYGKDFD-----------LKA-AFQAGGFPSTHSSCVVAAATGLAL 115 (276)
Q Consensus 63 ~Al~a~~iAQ~iK~~i~~~~~~r~~d-----------~~~-l~~sGGMPSSHSA~V~aLataIGl 115 (276)
.++.+-++.+++|..+. +.|-+. ... --...++||.|++...+.++.+..
T Consensus 3 ~~~~~~~~~~~lK~~~~---r~RP~~~~~~~~~~~~~~~~~~~~~~sfPSgHa~~~~~~~~~l~~ 64 (116)
T smart00014 3 LAVVSLLFTGVIKNYFG---RPRPFFLDIGDACCTPNFLLTLEAGYSFPSGHTAFAFAFALFLLL 64 (116)
T ss_pred HHHHHHHHHHHHHHHhC---CCCcCcccccccccCcchhhhcCCCCCcChHHHHHHHHHHHHHHH
Confidence 45677788889998864 333221 111 135578999999999888887765
No 23
>PRK10699 phosphatidylglycerophosphatase B; Provisional
Probab=96.30 E-value=0.07 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=20.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHh
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAI 275 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~ 275 (276)
-|-|..|++|+++|++++++.+.+
T Consensus 206 vH~psDVlaG~llG~~~~~l~~~l 229 (244)
T PRK10699 206 MHWPRDLVVATLISWLLVTVATWL 229 (244)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999998877643
No 24
>PLN02731 Putative lipid phosphate phosphatase
Probab=95.88 E-value=0.099 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAVSA 274 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~~~ 274 (276)
|.|..|++|+++|++++++.|.
T Consensus 239 Hh~sDVlaG~lLG~~iA~~~Y~ 260 (333)
T PLN02731 239 HHWQDVFAGGLLGLAISTICYL 260 (333)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999884
No 25
>cd03396 PAP2_like_6 PAP2_like_6 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which mainly contains bacterial proteins, lacks functional characterization and may act as a membrane-associated lipid phosphatase.
Probab=95.63 E-value=0.21 Score=43.60 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhC
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSAIM 276 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~~~ 276 (276)
.|=|..|++|+++|.++++++|.+.
T Consensus 173 ~Hf~SDvl~g~~ig~~~~~~~~~~~ 197 (197)
T cd03396 173 AHFLSDVLWSLLLVWLIALLLYRLI 197 (197)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999998753
No 26
>PLN02250 lipid phosphate phosphatase
Probab=95.16 E-value=0.22 Score=47.77 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAVSA 274 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~~~ 274 (276)
|-|..|++|+++|++++++.|.
T Consensus 221 Hh~sDVlaG~lIG~~~A~~~y~ 242 (314)
T PLN02250 221 HHWQDVFAGALIGLTVASFCYL 242 (314)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998874
No 27
>PLN02715 lipid phosphate phosphatase
Probab=93.50 E-value=0.92 Score=43.95 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAVSA 274 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~~~ 274 (276)
|-|..|++|+++|++++++.|.
T Consensus 245 Hh~sDVlaG~lLG~~~a~~~y~ 266 (327)
T PLN02715 245 HHWQDVFAGALIGILVAAFCYR 266 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998874
No 28
>cd03380 PAP2_like_1 PAP2_like_1 proteins, a sub-family of PAP2, containing bacterial acid phosphatase, vanadium chloroperoxidases and vanadium bromoperoxidases.
Probab=92.11 E-value=1.9 Score=37.78 Aligned_cols=24 Identities=33% Similarity=0.206 Sum_probs=19.5
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHh
Q 040837 94 QAGGFPSTHSSCVVAAATGLALER 117 (276)
Q Consensus 94 ~sGGMPSSHSA~V~aLataIGl~~ 117 (276)
..+++||.|++...++++.+....
T Consensus 141 ~~~SfPSGHa~~a~a~a~~l~~~~ 164 (209)
T cd03380 141 KHPSYPSGHATFGGAAALVLAELF 164 (209)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHH
Confidence 468999999999988888876543
No 29
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=91.88 E-value=0.66 Score=41.38 Aligned_cols=70 Identities=16% Similarity=0.055 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCccch------hhhhccCCCCchhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 040837 61 LIAAGVSAAIGQLSKPVTGSLLYGKDFDL------KAAFQAGGFPSTHSSCVVAAATGLALERGFSDSFFGLTVVYAGLV 134 (276)
Q Consensus 61 L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~------~~l~~sGGMPSSHSA~V~aLataIGl~~G~~S~~FAiA~vfA~IV 134 (276)
+.+.+++.++.+++|.++. +.|-+.. -.--..-.+||.|++...+.++++-+... -....+.++++++|
T Consensus 65 ~~~~~~~~~~~~~lk~~~~---r~RP~~~~~~~~~~~~~~~~SFPSgHa~~~~~~a~~~l~~~~--~~~~~~~~~~a~lv 139 (202)
T PRK11837 65 AIALAISLLVSWTIGHLFP---HDRPFVEGIGYNFLHHAADDSFPSDHGTVIFTFALAFLFWHR--LWSGSLLMAIAVAI 139 (202)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCCCCCCccccccccCCCCCCCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3445677788888897764 3343211 11134457999999977776554322211 11334555566666
Q ss_pred h
Q 040837 135 M 135 (276)
Q Consensus 135 M 135 (276)
+
T Consensus 140 a 140 (202)
T PRK11837 140 A 140 (202)
T ss_pred H
Confidence 5
No 30
>cd03397 PAP2_acid_phosphatase PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains to be determined.
Probab=88.15 E-value=4.9 Score=36.53 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAV 272 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~ 272 (276)
=|-|.-|++|.++|..+...+
T Consensus 194 vH~psDV~aG~~lG~~~~a~l 214 (232)
T cd03397 194 VHWPSDVMGGRIMAAALVAAL 214 (232)
T ss_pred CcCHHHHHHHHHHHHHHHHHH
Confidence 389999999999999886544
No 31
>KOG3030 consensus Lipid phosphate phosphatase and related enzymes of the PAP2 family [Lipid transport and metabolism]
Probab=68.40 E-value=4.8 Score=38.97 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAVSA 274 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~~~ 274 (276)
|-|.-|++|+++|+++|+++|.
T Consensus 238 HHwsDV~aG~liG~~~A~~~~~ 259 (317)
T KOG3030|consen 238 HHWSDVLAGALIGAFVAYFLYR 259 (317)
T ss_pred cccHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998873
No 32
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=68.34 E-value=5.1 Score=40.21 Aligned_cols=53 Identities=26% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCCchhHHHHHHHHHH----HHHHhCCCCchHHHHHHHHHHhhccccc--hhhhhhhhHH
Q 040837 96 GGFPSTHSSCVVAAATG----LALERGFSDSFFGLTVVYAGLVMYDAQG--VRREVGVHAK 150 (276)
Q Consensus 96 GGMPSSHSA~V~aLata----IGl~~G~~S~~FAiA~vfA~IVMYDA~G--VRr~aG~qA~ 150 (276)
=||||||++--+|++.. |-..+-+..|.+-+.++ +++.|=|.= =|-.-|+|..
T Consensus 157 YG~PStHt~natais~~~~~~ls~~d~~s~p~~~lgl~--lv~~y~~lv~lgRiY~GMHgv 215 (407)
T KOG2822|consen 157 YGMPSTHTMNATAISFYFFLVLSTMDRESYPIQYLGLS--LVLLYYALVCLGRIYCGMHGV 215 (407)
T ss_pred hCCCcchhhhhhHHHHHHHHHHHHhchhhhHHHHHHHH--HHHHHHHHHHHHHHHhcchHH
Confidence 47999999887777665 44445566663333222 222222221 1667777754
No 33
>cd03386 PAP2_Aur1_like PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
Probab=63.75 E-value=7.4 Score=33.60 Aligned_cols=40 Identities=30% Similarity=0.229 Sum_probs=26.7
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 040837 94 QAGGFPSTHSSCVVAAATGLALERGFSDSFFGLTVVYAGLVM 135 (276)
Q Consensus 94 ~sGGMPSSHSA~V~aLataIGl~~G~~S~~FAiA~vfA~IVM 135 (276)
....|||.|++....++..+.....- ....+..++++.+.
T Consensus 115 ~~~~fPS~H~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~i~ 154 (186)
T cd03386 115 PFNAFPSLHVAWAVLAALFLWRHRRR--LLRWLAVLWPLLIW 154 (186)
T ss_pred CcceeCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 67789999999998888877664321 23444455555443
No 34
>PF14378 PAP2_3: PAP2 superfamily
Probab=42.23 E-value=34 Score=29.46 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhccccchh
Q 040837 97 GFPSTHSSCVVAAATGLALERGFSDSFFGLTVVYAGLVMYDAQGVR 142 (276)
Q Consensus 97 GMPSSHSA~V~aLataIGl~~G~~S~~FAiA~vfA~IVMYDA~GVR 142 (276)
.|||-|.|...-.+..+.. .+-.--.+++.++++++++.-....|
T Consensus 127 afPSlH~a~a~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~stv~~~ 171 (191)
T PF14378_consen 127 AFPSLHVAWAVLCALALWR-VGRPRWLRALFLAFNVLILFSTVYTG 171 (191)
T ss_pred ccCchHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 6999999985554444433 23333334566666665554443333
No 35
>cd03398 PAP2_haloperoxidase PAP2, haloperoxidase_like subfamily. Haloperoxidases catalyze the oxidation of halides such as bromide or chloride by hydrogen peroxide, which results in subsequent halogenation of organic substrates, or halide-assisted disproportionation of hydrogen peroxide forming dioxygen. They are likely to participate in the biosynthesis of halogenated natural products, such as volatile halogenated hydrocarbons, chiral halogenated terpenes, acetogenins and indoles.
Probab=38.21 E-value=32 Score=30.96 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=22.4
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHhCCC
Q 040837 94 QAGGFPSTHSSCVVAAATGLALERGFS 120 (276)
Q Consensus 94 ~sGGMPSSHSA~V~aLataIGl~~G~~ 120 (276)
....+||.|+++..|.++.+...-|-+
T Consensus 143 ~~psyPSGHa~~a~a~a~vL~~~~~~~ 169 (232)
T cd03398 143 PHPSYPSGHATFAGAAATVLKALFGSD 169 (232)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 357899999999999999988776653
No 36
>PF10261 Scs3p: Inositol phospholipid synthesis and fat-storage-inducing TM; InterPro: IPR019388 This entry represents the fat storage-inducing transmembrane (FIT) family of proteins, which play an important role in lipid droplet accumulation. They are endoplasmic reticulum resident membrane proteins that induce lipid droplet accumulation in cell culture and when expressed in mouse liver []; they mediate the partitioning of triglyceride from the ER into cytosolic fatty droplets by an as-yet undetermined mechanism. The FIT family of proteins are not involved in triglyceride biosynthesis []. FIT1 and FIT2 proteins are six-transmembrane-domain containing proteins with both the N and C termini residing in the cytosol. FIT2 is the more anciently conserved homologue of the FIT family; this family of proteins do not share sequence similarity to known proteins or domains.
Probab=34.76 E-value=20 Score=32.85 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~~ 273 (276)
||+.|=+.|.++|.++-+++|
T Consensus 218 HT~~EKl~Gl~~g~~~~~~~Y 238 (238)
T PF10261_consen 218 HTILEKLSGLLFGYLGWYITY 238 (238)
T ss_pred CCHHHHHHHHHHHHHhheeeC
Confidence 999999999999999877655
No 37
>PRK11837 undecaprenyl pyrophosphate phosphatase; Provisional
Probab=31.82 E-value=45 Score=29.83 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.3
Q ss_pred cCC-CChhHHHHHHHHHHHHHHHHH
Q 040837 250 SIG-HTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 250 ~lG-HTpvEVlaGalLGiiVal~~~ 273 (276)
.+| |=|.-|++|+++|+++++++.
T Consensus 145 ylGvHypsDVlgG~~lG~~~~~~~~ 169 (202)
T PRK11837 145 YLGVHWPLDMLGALLVGMIGCLSAQ 169 (202)
T ss_pred HhcCccHHHHHHHHHHHHHHHHHHH
Confidence 345 889999999999999998764
No 38
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=28.63 E-value=19 Score=27.82 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 040837 257 EVVAGALLGFLVSLAV 272 (276)
Q Consensus 257 EVlaGalLGiiVal~~ 272 (276)
||++|++.|.++++++
T Consensus 9 ~vlaavIaG~Vvgll~ 24 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLF 24 (64)
T ss_dssp ----------------
T ss_pred hHHHHHHHHHHHHHHH
Confidence 6666666666665543
No 39
>PF10389 CoatB: Bacteriophage coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 2IFO_A.
Probab=27.56 E-value=55 Score=23.78 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSA 274 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~ 274 (276)
+-|++=-++|++||++|++.+|-
T Consensus 18 a~t~i~~ig~avL~v~V~i~v~k 40 (46)
T PF10389_consen 18 AKTDIATIGGAVLGVIVGIAVYK 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 34677789999999999999884
No 40
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=27.49 E-value=44 Score=30.57 Aligned_cols=16 Identities=50% Similarity=0.580 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 040837 260 AGALLGFLVSLAVSAI 275 (276)
Q Consensus 260 aGalLGiiVal~~~~~ 275 (276)
=|+++|.++|++.|.+
T Consensus 348 nGallG~liG~~~~~i 363 (367)
T PF04286_consen 348 NGALLGGLIGLLQYLI 363 (367)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4788888888887754
No 41
>PRK11212 hypothetical protein; Provisional
Probab=22.89 E-value=1.1e+02 Score=28.15 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHHHHHhhhhcCccchhhh
Q 040837 52 IAQVVHN--KVLIAAGVSAAIGQLSKPVTGSLLYGKDFDLKAA 92 (276)
Q Consensus 52 i~~l~~N--~~L~~Al~a~~iAQ~iK~~i~~~~~~r~~d~~~l 92 (276)
++.++.+ ++.+++++|.+++|++.+.+-+.+|++|+=|-|-
T Consensus 101 ~~~vfg~~~ri~laS~~AylvsQ~~dv~vf~~lK~~k~lWlRn 143 (210)
T PRK11212 101 LAEFNLFVARIALASFMAYVLGQILDVHVFNRLRQSRAWWVAP 143 (210)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhhhH
Confidence 3444444 5588999999999999998876667655445443
No 42
>TIGR00697 conserved hypothetical integral membrane protein. All known members of this family are proteins or 210-250 amino acids in length. Conserved regions of hydrophobicity suggest that all members of the family are integral membrane proteins.
Probab=21.58 E-value=1.4e+02 Score=26.96 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 040837 52 IAQVVHN--KVLIAAGVSAAIGQLSKPVTGSLLYGK 85 (276)
Q Consensus 52 i~~l~~N--~~L~~Al~a~~iAQ~iK~~i~~~~~~r 85 (276)
++.++.+ ++.+++++|.+++|++.+-+-..+|++
T Consensus 94 f~~vf~~~~ri~~aS~~Aylisq~~dv~if~~lK~~ 129 (202)
T TIGR00697 94 FEALFSSSPRIALASLVAYIVSQLLDVKVFTFLKKR 129 (202)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567776 789999999999999998776666653
No 43
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.30 E-value=1.5e+02 Score=19.85 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=12.0
Q ss_pred hHHHHHHHHHH-HHHHHHHHh
Q 040837 256 VEVVAGALLGF-LVSLAVSAI 275 (276)
Q Consensus 256 vEVlaGalLGi-iVal~~~~~ 275 (276)
.||+.|+++-+ ++++++|++
T Consensus 3 ~~vi~G~ilv~lLlgYLvyAL 23 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 46777766544 346666654
Done!