Query 040837
Match_columns 276
No_of_seqs 121 out of 349
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 96.2 0.027 9.1E-07 48.8 9.8 22 252-273 176-197 (230)
2 1d2t_A Acid phosphatase; all a 94.9 0.061 2.1E-06 46.7 7.3 22 252-273 188-209 (231)
3 1qi9_A Protein (vanadium bromo 33.9 26 0.00089 35.1 3.4 21 253-273 486-506 (556)
4 2k1k_A Ephrin type-A receptor 15.9 1E+02 0.0035 20.2 2.5 15 257-271 11-25 (38)
5 2ifo_A Inovirus; helical virus 14.9 1.2E+02 0.0042 21.0 2.8 23 252-274 18-40 (46)
6 3h90_A Ferrous-iron efflux pum 13.3 1.4E+02 0.005 25.8 3.6 23 250-272 65-87 (283)
7 1qi9_A Protein (vanadium bromo 13.3 1.2E+02 0.0041 30.4 3.3 23 95-117 411-433 (556)
8 2lx0_A Membrane fusion protein 12.7 1.7E+02 0.0057 18.7 2.7 12 252-263 2-13 (32)
9 2o08_A BH1327 protein; putativ 12.3 1.8E+02 0.0063 23.6 3.7 23 101-123 21-43 (188)
10 3ccg_A HD superfamily hydrolas 11.7 2E+02 0.0067 23.4 3.7 23 101-123 22-44 (190)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=96.22 E-value=0.027 Score=48.83 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~ 273 (276)
-|.|..|++|.++|++++..++
T Consensus 176 ~H~~sDVlaG~~lG~~~~~~~~ 197 (230)
T 2ipb_A 176 AHWQSDVDAGRYVGAVEFARLQ 197 (230)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999987764
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=94.94 E-value=0.061 Score=46.67 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~ 273 (276)
=|-|..|++|+++|++++..++
T Consensus 188 vH~psDVlaG~~lG~~~~~~~~ 209 (231)
T 1d2t_A 188 YHWQSDVDAARVVGSAVVATLH 209 (231)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999987754
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=33.90 E-value=26 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 040837 253 HTEVEVVAGALLGFLVSLAVS 273 (276)
Q Consensus 253 HTpvEVlaGalLGiiVal~~~ 273 (276)
|=|.-|++|+++|..++..++
T Consensus 486 HYPSDVlaG~lLG~~va~~vl 506 (556)
T 1qi9_A 486 HYRFDGIQGLLLGETITVRTL 506 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999987764
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=15.95 E-value=1e+02 Score=20.23 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 040837 257 EVVAGALLGFLVSLA 271 (276)
Q Consensus 257 EVlaGalLGiiVal~ 271 (276)
-.+||+++|.+++++
T Consensus 11 GaIAGiVvG~v~gv~ 25 (38)
T 2k1k_A 11 GEIVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CceeeeehHHHHHHH
Confidence 345777777665543
No 5
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=14.91 E-value=1.2e+02 Score=21.01 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=18.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHH
Q 040837 252 GHTEVEVVAGALLGFLVSLAVSA 274 (276)
Q Consensus 252 GHTpvEVlaGalLGiiVal~~~~ 274 (276)
+-|+.=-+++++||+++++.+|-
T Consensus 18 a~t~i~~IG~aVLgV~v~i~v~k 40 (46)
T 2ifo_A 18 AAGPIAAIGGAVLTVMVGIKVYK 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 34566778999999999999884
No 6
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=13.30 E-value=1.4e+02 Score=25.78 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.1
Q ss_pred cCCCChhHHHHHHHHHHHHHHHH
Q 040837 250 SIGHTEVEVVAGALLGFLVSLAV 272 (276)
Q Consensus 250 ~lGHTpvEVlaGalLGiiVal~~ 272 (276)
.-||...|.+++.+.|+++.++.
T Consensus 65 pyG~~r~E~l~~l~~~~~l~~~~ 87 (283)
T 3h90_A 65 SFGHGKAESLAALAQSMFISGSA 87 (283)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999876543
No 7
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=13.29 E-value=1.2e+02 Score=30.36 Aligned_cols=23 Identities=30% Similarity=0.167 Sum_probs=17.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHh
Q 040837 95 AGGFPSTHSSCVVAAATGLALER 117 (276)
Q Consensus 95 sGGMPSSHSA~V~aLataIGl~~ 117 (276)
...+||.|++...++++.+...-
T Consensus 411 ~~SFPSGHAt~A~A~A~vL~~l~ 433 (556)
T 1qi9_A 411 HPSYPSGHATQNGAFATVLKALI 433 (556)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHH
Confidence 44799999998888887776543
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=12.66 E-value=1.7e+02 Score=18.73 Aligned_cols=12 Identities=50% Similarity=0.606 Sum_probs=9.8
Q ss_pred CCChhHHHHHHH
Q 040837 252 GHTEVEVVAGAL 263 (276)
Q Consensus 252 GHTpvEVlaGal 263 (276)
-||--||++|.+
T Consensus 2 khtiweviaglv 13 (32)
T 2lx0_A 2 KHTIWEVIAGLV 13 (32)
T ss_dssp CSSSHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 389999999943
No 9
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=12.31 E-value=1.8e+02 Score=23.58 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCch
Q 040837 101 THSSCVVAAATGLALERGFSDSF 123 (276)
Q Consensus 101 SHSA~V~aLataIGl~~G~~S~~ 123 (276)
-||--|+.+|..+|...|++...
T Consensus 21 ~Hs~~Va~~A~~lA~~~g~~~~~ 43 (188)
T 2o08_A 21 QHTIGVMETAIDLAKLYGADQQK 43 (188)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHH
Confidence 49999999999999999997653
No 10
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=11.67 E-value=2e+02 Score=23.42 Aligned_cols=23 Identities=26% Similarity=0.036 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCch
Q 040837 101 THSSCVVAAATGLALERGFSDSF 123 (276)
Q Consensus 101 SHSA~V~aLataIGl~~G~~S~~ 123 (276)
.||--|+.+|..+|...|++...
T Consensus 22 ~Hs~~Va~~A~~lA~~~g~d~~~ 44 (190)
T 3ccg_A 22 KHSLGVMDTAVRLAGIYNEDTEK 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCHHH
Confidence 39999999999999999997653
Done!