BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040838
         (430 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With N-Acetylglucosamine
 pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With N-Acetylglucosamine
 pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With N-Acetylglucosamine
 pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With N-Acetylglucosamine
          Length = 347

 Score = 32.3 bits (72), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 32/80 (40%)

Query: 246 LTTVKEDDVLTFQNLNGNNEISAGKVSSEWETLKEMKLKEVKSKSENQRKSLYISRELQT 305
           +  + E D + FQ   G   +  G V   WE LKE  L  +    E Q ++ + S  L  
Sbjct: 250 VAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMK 309

Query: 306 RKTKQITGKVKVGSPRIKAL 325
            +     G   +G+  I  L
Sbjct: 310 LRHSSALGGASLGARHIGHL 329


>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With Adp And Glucose
 pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With Adp And Glucose
 pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With Adp And Glucose
 pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
           Complex With Adp And Glucose
          Length = 344

 Score = 32.0 bits (71), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 32/80 (40%)

Query: 246 LTTVKEDDVLTFQNLNGNNEISAGKVSSEWETLKEMKLKEVKSKSENQRKSLYISRELQT 305
           +  + E D + FQ   G   +  G V   WE LKE  L  +    E Q ++ + S  L  
Sbjct: 247 VAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMK 306

Query: 306 RKTKQITGKVKVGSPRIKAL 325
            +     G   +G+  I  L
Sbjct: 307 LRHSSALGGASLGARHIGHL 326


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.129    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,867,300
Number of Sequences: 62578
Number of extensions: 382095
Number of successful extensions: 643
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 15
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)