BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040838
         (430 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q187T6|MUTS_CLOD6 DNA mismatch repair protein MutS OS=Clostridium difficile (strain
           630) GN=mutS PE=3 SV=2
          Length = 947

 Score = 33.1 bits (74), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 278 LKEMKLKEVKSKSENQRKSLYISRELQTRKTKQITGKVKVGSPRIKALEDIKKAKLMKMK 337
           L E  +K  +S  +N+ +SL I  EL  +  K I       + + KAL D  +  LMK  
Sbjct: 827 LDEELVKVNQSNFKNKYESLKIEHELIVKDYKHIKKDYDKLNSKFKALND--EVALMKQN 884

Query: 338 KGKEKTSEGANLESFAVVKCSFDPQKDFRDSMIEMILEKRFSQPQELEELLACY 391
             KEK ++  +++  A+ + SFD     RD + E IL         L+ + + Y
Sbjct: 885 DDKEKINQEDSVKEVALTQISFDSVN--RDILSEEILNLDILNMTPLDAINSLY 936


>sp|P24733|MYS_ARGIR Myosin heavy chain, striated muscle OS=Argopecten irradians PE=1 SV=1
          Length = 1938

 Score = 32.7 bits (73), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 12/160 (7%)

Query: 218  IKRENCKLIRAALKKHHFVSSTDSRNSNLTTVKEDDVLTFQNLNG-----NNEISAGKVS 272
            ++ EN  L R      H VS      S L++  ED   + +          NE+    + 
Sbjct: 1277 LQAENSDLTRQLEDAEHRVSVLSKEKSQLSSQLEDARRSLEEETRARSKLQNEVR--NMH 1334

Query: 273  SEWETLKEMKLKEVKSKSENQRKSLYISRELQTRKTKQITGKVKVGSPRIKALEDIKKAK 332
            ++ + ++E   +E +SKS+ QR+    + E+Q  ++K  +     G+ R + LED K+  
Sbjct: 1335 ADMDAIREQLEEEQESKSDVQRQLSKANNEIQQWRSKFESE----GANRTEELEDQKRKL 1390

Query: 333  LMKMKKGKEKTSEGANLESFAVVKCSFDPQKDFRDSMIEM 372
            L K+ +  E+T+E AN +  A+ K     Q++  D  IE+
Sbjct: 1391 LGKLSEA-EQTTEAANAKCSALEKAKSRLQQELEDMSIEV 1429


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,578,942
Number of Sequences: 539616
Number of extensions: 7047596
Number of successful extensions: 25682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 612
Number of HSP's that attempted gapping in prelim test: 24059
Number of HSP's gapped (non-prelim): 1782
length of query: 430
length of database: 191,569,459
effective HSP length: 120
effective length of query: 310
effective length of database: 126,815,539
effective search space: 39312817090
effective search space used: 39312817090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)