Query 040838
Match_columns 430
No_of_seqs 121 out of 225
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 20:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ion_A PDCD4, programmed cell 55.7 8 0.00027 33.5 3.2 48 360-409 3-50 (152)
2 2nsz_A Programmed cell death p 54.5 8.4 0.00029 32.2 3.1 47 361-409 2-48 (129)
3 2rg8_A Programmed cell death p 53.3 11 0.00038 32.9 3.8 47 361-409 5-51 (165)
4 1wyw_A TDG, G/T mismatch-speci 23.1 16 0.00055 33.7 -0.3 15 63-77 39-53 (230)
5 3bqs_A Uncharacterized protein 21.3 1.4E+02 0.0049 24.1 5.1 46 367-413 14-61 (93)
6 3eiq_C Programmed cell death p 20.5 76 0.0026 31.1 3.9 46 363-410 51-96 (358)
7 2zzd_C Thiocyanate hydrolase s 19.4 85 0.0029 30.2 3.8 49 361-409 23-74 (243)
8 2zu6_B Programmed cell death p 18.6 78 0.0027 30.2 3.4 48 360-409 160-207 (307)
9 1ug3_A EIF4GI, eukaryotic prot 18.1 86 0.0029 29.6 3.6 45 361-407 6-50 (339)
10 2zu6_B Programmed cell death p 17.6 68 0.0023 30.6 2.8 44 364-409 1-44 (307)
No 1
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.67 E-value=8 Score=33.47 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 360 DPQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 360 DPy~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
.|-.+|++.|..+|.|-- .-.|++|-..|.=.||.+.+|..+|.-.+.
T Consensus 3 ~~~eel~kki~~lL~EY~--~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~ 50 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV 50 (152)
T ss_dssp CCCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 688899999999998742 235899999999999999888776665443
No 2
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.48 E-value=8.4 Score=32.19 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 361 PQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 361 Py~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
|-.+|++.|..+|.|-- .-.|++|-..|.=.||.+.+|..+|.-.+.
T Consensus 2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~ 48 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV 48 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 77889999999888742 345889999999999998888866654433
No 3
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=53.28 E-value=11 Score=32.93 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 361 PQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 361 Py~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
+..+|++.+..+|.|- ..-.|+.|.+.|.=.||++.+|..+|+..+.
T Consensus 5 s~ee~~kk~~~ii~EY--f~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~ 51 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 51 (165)
T ss_dssp SHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHTCSGGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 5678999999888874 2345889999999999999999988877655
No 4
>1wyw_A TDG, G/T mismatch-specific thymine DNA glycosylase; hydrolase; 2.10A {Homo sapiens} SCOP: c.18.1.2 PDB: 2d07_A 3uob_A* 2rba_A* 3ufj_A* 3uo7_A*
Probab=23.12 E-value=16 Score=33.69 Aligned_cols=15 Identities=40% Similarity=1.081 Sum_probs=13.4
Q ss_pred CCccccCCCCceeee
Q 040838 63 GGRFYGGEGDAFWRL 77 (430)
Q Consensus 63 ~grfygg~~dafwrl 77 (430)
-|++|++++..||++
T Consensus 39 ~g~~Ya~p~N~FW~i 53 (230)
T 1wyw_A 39 KGHHYPGPGNHFWKC 53 (230)
T ss_dssp HTSSSCSSSBCHHHH
T ss_pred cCCCCCCCccHHHHH
Confidence 489999999999993
No 5
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.30 E-value=1.4e+02 Score=24.10 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCChhHHHHH--HHHHHhcCCCCchhhHHHHHHHHHHH
Q 040838 367 DSMIEMILEKRFSQPQELEEL--LACYLTLNSDEYHDLIIKVFRQVWFD 413 (430)
Q Consensus 367 ~SMvEMI~e~gI~d~ddLEEL--L~CYLsLNs~ehH~~IV~AF~DVw~~ 413 (430)
..|++|...-||.+.++|.++ .++|+.|-...+...+ .+|-.+--+
T Consensus 14 ~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~-~~L~aL~gA 61 (93)
T 3bqs_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCM-SELYALEGA 61 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCH-HHHHHHHHH
Confidence 468999999999999999987 7899999877544444 666555333
No 6
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.52 E-value=76 Score=31.14 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 040838 363 KDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQV 410 (430)
Q Consensus 363 ~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~DV 410 (430)
.+|++-...+|.+- ..-.++.|.+.|.=.||.+.+|..+|..++..
T Consensus 51 ee~~k~~~~ii~EY--f~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hcCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 69999888888874 34568899999999999999998888766553
No 7
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=19.43 E-value=85 Score=30.21 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=37.5
Q ss_pred chHHHHH---HHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 361 PQKDFRD---SMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 361 Py~DFR~---SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
|..+|-. -+++++.++|+.+.++++.++..|-...+..=-+++.+|.+|
T Consensus 23 ~~~~~~~~~~AL~~lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D 74 (243)
T 2zzd_C 23 EVSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD 74 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC
Confidence 4556655 889999999999999999999999999444444555555444
No 8
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=18.63 E-value=78 Score=30.21 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=38.7
Q ss_pred CchHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 360 DPQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 360 DPy~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
-|-.+|++-|..+|.|-- .-.|++|-..|.=.||.|.+|+.+|...+.
T Consensus 160 ~~~eelkkki~~lL~EY~--~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~ 207 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAII 207 (307)
T ss_dssp SCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 577899999999998752 235899999999999999988877765443
No 9
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=18.06 E-value=86 Score=29.56 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHH
Q 040838 361 PQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVF 407 (430)
Q Consensus 361 Py~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF 407 (430)
+-.+|++.|..+|.|- ..-.|++|.+.|.-.||.+.+|..+|...
T Consensus 6 s~ee~~k~~~~ll~Ey--~~~~d~~Ea~~ci~el~~p~~~~~~v~~~ 50 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEY--LHLNDMKEAVQCVQELASPSLLFIFVRHG 50 (339)
T ss_dssp HHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--HhCCCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 3456777777777653 11236778889999999887666555443
No 10
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=17.61 E-value=68 Score=30.60 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 364 DFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 364 DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
||+.-+..+|.+- +.-.|++|.+.|.=.||.+.+|..++...+.
T Consensus 1 e~~k~~~~ii~EY--f~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~ 44 (307)
T 2zu6_B 1 AFEKTLTPIIQEY--FEHGDTNEVAEMLRDLNLGEMKSGVPVLAVS 44 (307)
T ss_dssp CHHHHHHHHHHHH--HHHCCHHHHHHHHHTTCCGGGGGGHHHHHHH
T ss_pred ChHHHHHHHHHHH--HcCCCHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 4666667777653 2335889999999999999999988886654
Done!