Query 040838
Match_columns 430
No_of_seqs 121 out of 225
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 20:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040838.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040838hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 51.8 4.6 0.00033 31.9 3.1 47 361-409 2-48 (129)
2 d1iqpa1 a.80.1.1 (A:233-327) R 34.9 36 0.0027 24.7 5.7 64 360-423 17-81 (95)
3 d1ug3a1 a.118.1.14 (A:1235-142 27.4 22 0.0016 29.3 3.6 45 363-409 7-51 (193)
4 d2qdya1 d.149.1.1 (A:10-206) I 16.2 61 0.0044 28.1 4.1 52 358-409 6-58 (197)
5 d2eiaa1 a.28.3.1 (A:148-222) E 15.9 1E+02 0.0074 22.3 4.8 47 357-406 9-57 (75)
6 d1v29a_ d.149.1.1 (A:) Cobalt- 15.7 57 0.0041 28.4 3.8 50 360-409 10-63 (203)
7 d1ugpa_ d.149.1.1 (A:) Cobalt- 15.3 48 0.0035 28.9 3.2 44 366-409 20-64 (203)
8 d2fj6a1 a.60.15.1 (A:1-74) Hyp 14.7 66 0.0048 24.0 3.5 52 358-415 16-68 (74)
9 d1muga_ c.18.1.2 (A:) G:T/U mi 12.5 20 0.0015 28.2 -0.1 15 63-77 26-40 (165)
10 d1v29b_ b.34.4.4 (B:) Cobalt-c 11.2 1.5E+02 0.011 25.4 5.4 41 360-400 71-111 (229)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.79 E-value=4.6 Score=31.93 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 361 PQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 361 Py~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
|-..+++.|..||.|-- .-.|++|.+.|.-.||++.+|..+|...+.
T Consensus 2 pv~~l~kk~~~ll~EY~--~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~ 48 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIV 48 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 55567888888888743 567888899999999999888766654444
No 2
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=34.86 E-value=36 Score=24.68 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=50.7
Q ss_pred CchHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCC-CchhhHHHHHHHHHHHhhhccchhhh
Q 040838 360 DPQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSD-EYHDLIIKVFRQVWFDLNQACFDELQ 423 (430)
Q Consensus 360 DPy~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~-ehH~~IV~AF~DVw~~L~s~~~~~~~ 423 (430)
.++.+=+..+.+++.+.|+...+=|..|-...+.++=+ .....|+..+.++-..|..++-+.+|
T Consensus 17 ~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~d~rL~~G~~e~iQ 81 (95)
T d1iqpa1 17 GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQ 81 (95)
T ss_dssp TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 56777888889999999999888888888877766633 33567888999988889888877554
No 3
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.44 E-value=22 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 040838 363 KDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 363 ~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH~~IV~AF~D 409 (430)
.||++-+..+|.|-= .-.|+.|.+.|.=.||++.+|..+|...+.
T Consensus 7 ee~~kk~~~il~Ey~--~~~D~~Ea~~~l~el~~p~~~~~~V~~~i~ 51 (193)
T d1ug3a1 7 EELEKKSKAIIEEYL--HLNDMKEAVQCVQELASPSLLFIFVRHGVE 51 (193)
T ss_dssp HHHHHHHHHHHHHHH--HHCCHHHHHHHHHTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 467777777776521 223667778888888888777766654443
No 4
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=16.22 E-value=61 Score=28.11 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=41.9
Q ss_pred cCCchHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CCCCchhhHHHHHHH
Q 040838 358 SFDPQKDFRDSMIEMILEKRFSQPQELEELLACYLTL-NSDEYHDLIIKVFRQ 409 (430)
Q Consensus 358 S~DPy~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsL-Ns~ehH~~IV~AF~D 409 (430)
..+|..+=-+.+++++.++|+.+.+++..++..|-.= .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 4678888889999999999999999999999999765 344444566666555
No 5
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=15.94 E-value=1e+02 Score=22.25 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=30.4
Q ss_pred ecCCchHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHhcCCCCchhhHHHH
Q 040838 357 CSFDPQKDFRDSMIEMILEKRFSQ--PQELEELLACYLTLNSDEYHDLIIKV 406 (430)
Q Consensus 357 ~S~DPy~DFR~SMvEMI~e~gI~d--~ddLEELL~CYLsLNs~ehH~~IV~A 406 (430)
-..+||.||.+.+.+-+....... -..|-+-| +|=..|+.. +.|+++
T Consensus 9 GpkEpf~dfVdRl~~a~~~~~~~~~~k~~~~~~L-~~qNANpdC--k~iLr~ 57 (75)
T d2eiaa1 9 GAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTL-TIQNANEEC--RNAMRH 57 (75)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHTSCTTT--TTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHhhcCcHhHHHHHHHHH-hHhcCCHHH--HHHHHh
Confidence 357899999999999998775432 12233333 477777765 444443
No 6
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=15.72 E-value=57 Score=28.40 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=39.2
Q ss_pred CchHHH---HHHHHHHHHhcCCCChhHHHHHHHHHHh-cCCCCchhhHHHHHHH
Q 040838 360 DPQKDF---RDSMIEMILEKRFSQPQELEELLACYLT-LNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 360 DPy~DF---R~SMvEMI~e~gI~d~ddLEELL~CYLs-LNs~ehH~~IV~AF~D 409 (430)
.|..|| -..|++.+.++|+.+.+++..++..|-+ +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 466664 3567788889999999999999999998 4776666777776554
No 7
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=15.28 E-value=48 Score=28.93 Aligned_cols=44 Identities=9% Similarity=0.263 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh-cCCCCchhhHHHHHHH
Q 040838 366 RDSMIEMILEKRFSQPQELEELLACYLT-LNSDEYHDLIIKVFRQ 409 (430)
Q Consensus 366 R~SMvEMI~e~gI~d~ddLEELL~CYLs-LNs~ehH~~IV~AF~D 409 (430)
-+.+++.+.++|+.+.+++..++..|-. +.+..=-++|-+|.+|
T Consensus 20 vkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D 64 (203)
T d1ugpa_ 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC
Confidence 3567788889999999999999999997 5666666777777666
No 8
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=14.71 E-value=66 Score=23.96 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=35.5
Q ss_pred cCCchHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhh
Q 040838 358 SFDPQKDFRDSMIEMILEKRF-SQPQELEELLACYLTLNSDEYHDLIIKVFRQVWFDLN 415 (430)
Q Consensus 358 S~DPy~DFR~SMvEMI~e~gI-~d~ddLEELL~CYLsLNs~ehH~~IV~AF~DVw~~L~ 415 (430)
+.||-.||-+-|- ..... ...++-+||. -||.+|+. |-..+.+|-++|...-
T Consensus 16 ~~d~i~~lA~~a~---~D~~FPK~s~d~~eiS-~YLE~n~~--~l~sm~~FD~aW~~Y~ 68 (74)
T d2fj6a1 16 PKDSISEFANQAY---EDHSFPKTSTDYHEIS-SYLELNAD--YLHTMATFDEAWDQYE 68 (74)
T ss_dssp CCSHHHHHHHHHH---TCTTSCTTCCCHHHHH-HHHHTSHH--HHTTHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHh---cCcCCCCCCCCHHHHH-HHHHHccc--ccchHHHHHHHHHHHH
Confidence 6788888866543 23332 2345666654 89999974 5667899999998753
No 9
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=12.49 E-value=20 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.667 Sum_probs=13.1
Q ss_pred CCccccCCCCceeee
Q 040838 63 GGRFYGGEGDAFWRL 77 (430)
Q Consensus 63 ~grfygg~~dafwrl 77 (430)
-|++|+|.|..||++
T Consensus 26 ~g~~f~~p~n~fw~~ 40 (165)
T d1muga_ 26 TGFPFAHPANRFWKV 40 (165)
T ss_dssp HSSTTCSTTCCHHHH
T ss_pred cCCCccCcHHHHHHH
Confidence 378999999999993
No 10
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=11.24 E-value=1.5e+02 Score=25.37 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCCCch
Q 040838 360 DPQKDFRDSMIEMILEKRFSQPQELEELLACYLTLNSDEYH 400 (430)
Q Consensus 360 DPy~DFR~SMvEMI~e~gI~d~ddLEELL~CYLsLNs~ehH 400 (430)
+=|+-+..+|+.+++++|+.+.++|.+-...+...-....|
T Consensus 71 sYYe~Wl~ale~lLvekG~it~~EL~~r~~~~~a~p~~~~~ 111 (229)
T d1v29b_ 71 SYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDTKIQ 111 (229)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCTTCCCC
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcccCCccccc
Confidence 46888999999999999999999999999999886544433
Done!