BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040839
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
          Length = 313

 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 6   EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVE 64
           + L  DF++S GDNFY  G+    D  F ++F  +++ PSL+   W+ + GNHD+ G+V 
Sbjct: 40  KTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVS 99

Query: 65  AQLSPVLTRKDSRW 78
           AQ++   ++   RW
Sbjct: 100 AQIA--YSKISKRW 111


>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
           Pichia Pastoris
          Length = 310

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           L  DF++S GDNFY  G+   +D  F ++F  +++  SL+K  WY + GNHD+ G+V AQ
Sbjct: 46  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 105

Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 106 IA--YSKISKRW 115


>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
           Inhibitory Conformation Of The Repression Loop
          Length = 304

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           L  DF++S GDNFY  G+   +D  F ++F  +++  SL+K  WY + GNHD+ G+V AQ
Sbjct: 40  LGADFILSLGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNHDHLGNVSAQ 99

Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 100 IA--YSKISKRW 109


>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
          Length = 327

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           +  DF++S GDNFY  G+   +D  F ++F  +++  +L+   WY + GNHD+ G+V AQ
Sbjct: 63  MGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQ 122

Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 123 IA--YSKISKRW 132


>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
          Length = 306

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 8   LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQK-QWYNVLGNHDYRGDVEAQ 66
           +  DF++S GDNFY  G+   +D  F ++F  +++  +L+   WY + GNHD+ G+V AQ
Sbjct: 42  MGADFIMSLGDNFYFTGVHDANDKRFQETFEDVFSDRALRNIPWYVLAGNHDHLGNVSAQ 101

Query: 67  LSPVLTRKDSRW 78
           ++   ++   RW
Sbjct: 102 IA--YSKISKRW 111


>pdb|3TGH|A Chain A, Gap50 The Anchor In The Inner Membrane Complex Of
          Plasmodium
          Length = 342

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 9  EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPS--LQKQWYNVLGNHDYRGDVEAQ 66
           + F++S G NF  DG+ G +DPA+ + +  +Y+     +   ++ VLG  D+ G+  AQ
Sbjct: 34 RVTFIVSPGSNFI-DGVKGLNDPAWKNLYEDVYSEEKGDMYMPFFTVLGTRDWTGNYNAQ 92

Query: 67 L 67
          L
Sbjct: 93 L 93


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.140    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,596,685
Number of Sequences: 62578
Number of extensions: 192071
Number of successful extensions: 360
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 10
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)