Query 040839
Match_columns 131
No_of_seqs 121 out of 649
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 12:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040839.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040839hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2679 Purple (tartrate-resis 100.0 1.1E-33 2.3E-38 216.5 5.5 130 1-130 67-196 (336)
2 PTZ00422 glideosome-associated 100.0 1E-29 2.2E-34 204.6 8.3 118 1-120 49-203 (394)
3 cd07378 MPP_ACP5 Homo sapiens 99.8 3.8E-20 8.2E-25 142.1 10.0 105 1-105 24-135 (277)
4 cd00839 MPP_PAPs purple acid p 99.3 2.1E-11 4.5E-16 94.3 8.9 90 8-101 32-128 (294)
5 PLN02533 probable purple acid 99.2 1.2E-10 2.6E-15 95.6 8.8 88 6-100 162-259 (427)
6 cd08163 MPP_Cdc1 Saccharomyces 99.1 1.2E-10 2.6E-15 89.8 5.0 95 4-102 40-137 (257)
7 cd07396 MPP_Nbla03831 Homo sap 99.1 6.4E-10 1.4E-14 85.7 7.8 85 7-101 38-123 (267)
8 cd07395 MPP_CSTP1 Homo sapiens 99.0 7.5E-10 1.6E-14 84.6 6.7 86 9-101 49-136 (262)
9 cd07401 MPP_TMEM62_N Homo sapi 99.0 7.1E-10 1.5E-14 85.2 6.4 95 4-101 28-134 (256)
10 KOG1432 Predicted DNA repair e 99.0 2.3E-09 4.9E-14 85.2 8.4 118 1-128 92-236 (379)
11 cd07402 MPP_GpdQ Enterobacter 98.9 8E-09 1.7E-13 77.5 9.3 79 9-100 40-118 (240)
12 cd00842 MPP_ASMase acid sphing 98.8 2E-08 4.3E-13 78.1 7.3 96 8-103 67-182 (296)
13 KOG1378 Purple acid phosphatas 98.7 1.7E-08 3.7E-13 82.8 6.0 100 8-118 173-281 (452)
14 PRK11148 cyclic 3',5'-adenosin 98.7 3.5E-08 7.6E-13 76.2 7.1 78 8-100 54-131 (275)
15 cd07383 MPP_Dcr2 Saccharomyces 98.5 8.3E-08 1.8E-12 70.7 3.8 57 3-63 35-92 (199)
16 cd08166 MPP_Cdc1_like_1 unchar 98.4 5.9E-07 1.3E-11 66.8 5.7 54 6-62 39-95 (195)
17 PF00149 Metallophos: Calcineu 98.4 1.9E-07 4.1E-12 63.5 2.1 55 3-61 25-79 (200)
18 KOG3662 Cell division control 98.3 1.1E-06 2.4E-11 71.6 5.1 89 7-103 91-185 (410)
19 cd07384 MPP_Cdc1_like Saccharo 98.3 7.8E-07 1.7E-11 64.6 3.7 57 3-61 39-101 (171)
20 cd08165 MPP_MPPE1 human MPPE1 98.3 1.8E-06 4E-11 61.8 5.3 55 4-61 33-90 (156)
21 cd07385 MPP_YkuE_C Bacillus su 98.2 5.3E-06 1.1E-10 61.5 6.2 51 5-62 28-78 (223)
22 cd00840 MPP_Mre11_N Mre11 nucl 98.2 1.9E-06 4.1E-11 63.5 3.8 55 4-62 36-91 (223)
23 cd08164 MPP_Ted1 Saccharomyces 98.1 5.2E-06 1.1E-10 61.7 5.5 53 6-61 41-112 (193)
24 PHA02546 47 endonuclease subun 98.1 2.8E-06 6E-11 67.9 4.1 56 3-60 33-89 (340)
25 COG0420 SbcD DNA repair exonuc 98.1 2.9E-06 6.2E-11 68.6 4.1 55 3-61 34-89 (390)
26 PRK10966 exonuclease subunit S 98.1 3.5E-06 7.7E-11 68.9 4.0 56 3-62 33-89 (407)
27 TIGR00619 sbcd exonuclease Sbc 98.0 4E-06 8.7E-11 64.4 3.6 55 3-61 33-89 (253)
28 cd07400 MPP_YydB Bacillus subt 98.0 7.3E-06 1.6E-10 56.9 4.5 50 4-59 30-80 (144)
29 cd07399 MPP_YvnB Bacillus subt 98.0 5.7E-06 1.2E-10 61.9 3.8 51 5-60 31-82 (214)
30 cd00838 MPP_superfamily metall 98.0 5E-06 1.1E-10 55.1 3.0 50 4-59 21-70 (131)
31 cd07391 MPP_PF1019 Pyrococcus 98.0 1.1E-05 2.5E-10 58.2 4.7 55 3-61 35-89 (172)
32 COG1409 Icc Predicted phosphoh 97.9 4.3E-05 9.2E-10 58.1 7.2 83 7-101 31-115 (301)
33 TIGR03729 acc_ester putative p 97.9 3.1E-05 6.6E-10 58.6 6.3 81 6-98 29-110 (239)
34 cd07389 MPP_PhoD Bacillus subt 97.9 5.8E-05 1.3E-09 56.3 7.7 56 6-61 26-103 (228)
35 cd07392 MPP_PAE1087 Pyrobaculu 97.9 2E-05 4.3E-10 56.5 4.9 48 5-61 19-66 (188)
36 PRK11340 phosphodiesterase Yae 97.9 1.1E-05 2.5E-10 62.3 3.6 50 5-60 76-125 (271)
37 cd07404 MPP_MS158 Microscilla 97.8 2.8E-05 6.2E-10 55.4 3.8 47 5-60 22-68 (166)
38 TIGR00583 mre11 DNA repair pro 97.7 3E-05 6.5E-10 63.5 4.0 58 3-61 36-124 (405)
39 cd07388 MPP_Tt1561 Thermus the 97.7 9.5E-05 2.1E-09 56.1 5.3 49 5-60 27-75 (224)
40 cd07393 MPP_DR1119 Deinococcus 97.6 0.00012 2.5E-09 55.4 4.7 44 9-60 41-84 (232)
41 cd07379 MPP_239FB Homo sapiens 97.5 0.00024 5.2E-09 49.1 5.0 47 7-61 17-64 (135)
42 PRK05340 UDP-2,3-diacylglucosa 97.4 0.00016 3.5E-09 54.8 4.0 52 8-60 31-83 (241)
43 TIGR03768 RPA4764 metallophosp 97.4 8.5E-05 1.8E-09 61.7 2.5 56 2-60 92-170 (492)
44 TIGR01854 lipid_A_lpxH UDP-2,3 97.4 0.00021 4.6E-09 53.9 4.1 51 9-60 30-81 (231)
45 cd07397 MPP_DevT Myxococcus xa 97.4 0.00026 5.7E-09 54.3 4.4 45 4-61 20-64 (238)
46 TIGR00024 SbcD_rel_arch putati 97.3 0.00025 5.5E-09 53.8 4.1 51 3-60 52-102 (225)
47 COG1408 Predicted phosphohydro 97.2 0.00028 6E-09 55.4 3.3 53 7-65 71-123 (284)
48 COG1407 Predicted ICC-like pho 97.2 0.00063 1.4E-08 52.0 4.9 56 2-61 56-111 (235)
49 PRK09453 phosphodiesterase; Pr 97.2 0.00062 1.4E-08 49.4 4.6 50 5-60 23-76 (182)
50 cd07398 MPP_YbbF-LpxH Escheric 97.2 0.00032 6.9E-09 51.7 2.8 54 8-61 29-83 (217)
51 PF12850 Metallophos_2: Calcin 97.1 0.00043 9.3E-09 48.0 3.0 37 8-60 24-60 (156)
52 cd07386 MPP_DNA_pol_II_small_a 97.1 0.0011 2.4E-08 50.2 5.2 55 8-62 34-96 (243)
53 TIGR00040 yfcE phosphoesterase 97.0 0.0015 3.3E-08 46.2 4.9 40 6-60 24-64 (158)
54 TIGR03767 P_acnes_RR metalloph 97.0 0.00031 6.7E-09 58.7 1.4 22 39-60 175-196 (496)
55 cd07390 MPP_AQ1575 Aquifex aeo 96.8 0.0011 2.5E-08 47.6 3.2 43 8-61 41-83 (168)
56 cd00841 MPP_YfcE Escherichia c 96.8 0.0016 3.4E-08 45.7 3.5 36 10-61 25-60 (155)
57 PF14582 Metallophos_3: Metall 96.6 0.002 4.2E-08 49.3 3.3 51 4-60 27-102 (255)
58 cd07403 MPP_TTHA0053 Thermus t 96.3 0.0078 1.7E-07 41.5 4.7 38 7-59 20-57 (129)
59 cd07425 MPP_Shelphs Shewanella 96.3 0.0039 8.5E-08 46.5 3.3 49 8-60 31-80 (208)
60 PHA02239 putative protein phos 96.3 0.0045 9.8E-08 47.2 3.3 45 9-60 29-73 (235)
61 PF09423 PhoD: PhoD-like phosp 96.2 0.0024 5.1E-08 52.7 1.5 59 3-61 126-208 (453)
62 cd07394 MPP_Vps29 Homo sapiens 96.1 0.0084 1.8E-07 43.7 4.2 39 7-60 27-65 (178)
63 PRK04036 DNA polymerase II sma 96.1 0.0074 1.6E-07 50.9 4.3 56 7-62 282-345 (504)
64 cd07422 MPP_ApaH Escherichia c 95.8 0.0062 1.3E-07 47.1 2.3 42 9-60 26-67 (257)
65 KOG3770 Acid sphingomyelinase 95.7 0.0084 1.8E-07 51.1 2.8 56 4-60 204-263 (577)
66 PRK00166 apaH diadenosine tetr 95.6 0.013 2.8E-07 45.8 3.5 43 8-60 27-69 (275)
67 cd00844 MPP_Dbr1_N Dbr1 RNA la 95.6 0.026 5.6E-07 43.8 5.0 50 8-60 27-86 (262)
68 cd00144 MPP_PPP_family phospho 95.5 0.017 3.6E-07 42.7 3.5 46 8-60 23-68 (225)
69 cd07413 MPP_PA3087 Pseudomonas 95.3 0.019 4.2E-07 43.2 3.2 44 9-60 33-76 (222)
70 KOG2310 DNA repair exonuclease 95.1 0.015 3.3E-07 49.3 2.4 24 3-26 46-69 (646)
71 cd07424 MPP_PrpA_PrpB PrpA and 94.4 0.047 1E-06 40.4 3.4 41 8-60 27-67 (207)
72 PRK13625 bis(5'-nucleosyl)-tet 94.2 0.044 9.5E-07 41.8 2.9 42 10-59 37-78 (245)
73 cd07423 MPP_PrpE Bacillus subt 93.9 0.051 1.1E-06 41.0 2.7 43 9-59 37-79 (234)
74 TIGR00668 apaH bis(5'-nucleosy 93.8 0.039 8.4E-07 43.3 2.0 41 9-59 28-68 (279)
75 PRK11439 pphA serine/threonine 93.7 0.048 1E-06 40.8 2.3 39 9-59 44-82 (218)
76 COG2908 Uncharacterized protei 93.4 0.074 1.6E-06 40.8 2.8 50 9-60 29-80 (237)
77 cd07406 MPP_CG11883_N Drosophi 93.3 0.13 2.8E-06 39.4 4.1 49 8-62 36-85 (257)
78 COG2129 Predicted phosphoester 92.9 0.17 3.7E-06 38.5 4.1 52 4-61 25-78 (226)
79 cd07421 MPP_Rhilphs Rhilph pho 92.8 0.1 2.3E-06 41.4 3.0 44 10-60 35-80 (304)
80 COG1768 Predicted phosphohydro 92.8 0.11 2.4E-06 38.7 2.8 45 9-62 43-88 (230)
81 cd07410 MPP_CpdB_N Escherichia 92.5 0.07 1.5E-06 41.1 1.6 51 8-62 42-97 (277)
82 cd00845 MPP_UshA_N_like Escher 92.4 0.22 4.7E-06 37.5 4.2 49 8-62 35-84 (252)
83 COG0622 Predicted phosphoester 91.8 0.23 5.1E-06 36.2 3.6 41 6-60 25-65 (172)
84 COG4186 Predicted phosphoester 90.9 0.24 5.3E-06 36.0 2.8 42 10-61 46-87 (186)
85 cd07380 MPP_CWF19_N Schizosacc 90.8 0.41 8.8E-06 34.1 3.9 45 6-58 23-68 (150)
86 PRK09968 serine/threonine-spec 90.4 0.3 6.4E-06 36.6 3.0 40 8-59 41-80 (218)
87 cd07408 MPP_SA0022_N Staphyloc 90.2 0.27 5.9E-06 37.5 2.8 48 9-62 37-84 (257)
88 COG3540 PhoD Phosphodiesterase 90.2 0.19 4.2E-06 42.2 2.0 22 5-26 164-185 (522)
89 cd07411 MPP_SoxB_N Thermus the 88.7 0.26 5.5E-06 37.8 1.6 47 9-62 50-97 (264)
90 smart00156 PP2Ac Protein phosp 85.6 1 2.2E-05 35.1 3.4 46 8-60 53-99 (271)
91 cd07382 MPP_DR1281 Deinococcus 85.4 2 4.3E-05 33.3 4.9 47 5-62 25-72 (255)
92 cd07420 MPP_RdgC Drosophila me 84.2 1.2 2.6E-05 35.7 3.3 43 11-60 80-123 (321)
93 cd07418 MPP_PP7 PP7, metalloph 83.4 1.2 2.6E-05 36.4 3.1 43 11-60 95-138 (377)
94 PF04042 DNA_pol_E_B: DNA poly 83.1 0.49 1.1E-05 34.7 0.7 62 7-68 29-100 (209)
95 cd07387 MPP_PolD2_C PolD2 (DNA 83.0 2.1 4.6E-05 33.2 4.1 96 8-103 41-156 (257)
96 cd07409 MPP_CD73_N CD73 ecto-5 82.9 2.3 5E-05 32.9 4.4 48 9-62 48-96 (281)
97 cd07416 MPP_PP2B PP2B, metallo 82.8 1.5 3.3E-05 34.7 3.4 44 10-60 70-114 (305)
98 cd07419 MPP_Bsu1_C Arabidopsis 82.4 1.2 2.7E-05 35.2 2.8 42 12-60 85-127 (311)
99 cd07412 MPP_YhcR_N Bacillus su 82.1 0.99 2.2E-05 35.2 2.1 48 10-62 43-90 (288)
100 cd07415 MPP_PP2A_PP4_PP6 PP2A, 79.7 1.6 3.4E-05 34.3 2.5 45 9-60 68-113 (285)
101 COG1311 HYS2 Archaeal DNA poly 79.5 4.1 8.9E-05 34.4 4.9 59 9-67 262-328 (481)
102 cd07414 MPP_PP1_PPKL PP1, PPKL 79.4 2 4.4E-05 33.8 3.0 45 9-60 76-121 (293)
103 TIGR00282 metallophosphoestera 79.0 3.6 7.7E-05 32.1 4.2 48 5-62 26-73 (266)
104 PF06874 FBPase_2: Firmicute f 78.5 1.6 3.4E-05 38.0 2.2 48 2-60 177-224 (640)
105 PTZ00244 serine/threonine-prot 77.1 2.3 5E-05 33.6 2.7 44 10-60 79-123 (294)
106 PTZ00480 serine/threonine-prot 76.7 2.5 5.4E-05 33.8 2.8 44 10-60 86-130 (320)
107 cd07417 MPP_PP5_C PP5, C-termi 76.1 2.2 4.7E-05 34.1 2.3 43 11-60 89-132 (316)
108 TIGR01530 nadN NAD pyrophospha 75.4 3.9 8.5E-05 34.9 3.8 49 8-62 48-96 (550)
109 TIGR03413 GSH_gloB hydroxyacyl 74.1 4.5 9.7E-05 30.8 3.5 46 12-61 120-168 (248)
110 PRK09419 bifunctional 2',3'-cy 73.7 5 0.00011 37.3 4.3 50 7-62 688-738 (1163)
111 PTZ00239 serine/threonine prot 73.5 3.1 6.8E-05 33.0 2.6 45 9-60 69-114 (303)
112 TIGR03767 P_acnes_RR metalloph 73.1 6.9 0.00015 33.3 4.6 19 82-100 292-311 (496)
113 cd07407 MPP_YHR202W_N Saccharo 70.3 5.9 0.00013 31.0 3.5 48 9-60 49-97 (282)
114 cd07405 MPP_UshA_N Escherichia 69.1 5 0.00011 31.2 2.9 48 9-62 42-89 (285)
115 PRK10241 hydroxyacylglutathion 67.5 7 0.00015 29.8 3.3 44 13-60 122-168 (251)
116 COG3855 Fbp Uncharacterized pr 63.6 5.5 0.00012 33.8 2.2 46 4-60 185-230 (648)
117 COG1209 RfbA dTDP-glucose pyro 63.6 3.4 7.3E-05 32.6 0.9 17 10-26 100-116 (286)
118 KOG2863 RNA lariat debranching 56.6 62 0.0013 26.9 6.9 88 9-106 30-133 (456)
119 KOG0374 Serine/threonine speci 51.7 13 0.00028 30.0 2.4 46 10-61 86-132 (331)
120 PRK09558 ushA bifunctional UDP 49.4 16 0.00035 31.1 2.8 48 9-62 76-123 (551)
121 COG0737 UshA 5'-nucleotidase/2 48.9 23 0.0005 29.8 3.6 51 7-62 67-117 (517)
122 TIGR03568 NeuC_NnaA UDP-N-acet 48.6 13 0.00028 29.9 2.0 44 2-59 86-130 (365)
123 PF02350 Epimerase_2: UDP-N-ac 46.1 10 0.00022 30.4 1.0 40 2-55 60-99 (346)
124 COG0381 WecB UDP-N-acetylgluco 43.5 35 0.00075 28.2 3.7 42 2-57 85-127 (383)
125 KOG0372 Serine/threonine speci 39.8 20 0.00044 28.1 1.7 15 47-61 101-115 (303)
126 TIGR03707 PPK2_P_aer polyphosp 36.6 36 0.00077 26.0 2.7 30 33-62 180-210 (230)
127 PLN02469 hydroxyacylglutathion 34.6 71 0.0015 24.5 4.1 46 13-61 130-178 (258)
128 COG1692 Calcineurin-like phosp 33.1 2.4E+02 0.0052 22.1 8.6 47 4-61 25-72 (266)
129 PF13277 YmdB: YmdB-like prote 30.6 37 0.0008 26.4 1.9 48 3-61 21-69 (253)
130 PF09949 DUF2183: Uncharacteri 29.8 76 0.0017 20.9 3.1 30 5-41 59-88 (100)
131 TIGR01390 CycNucDiestase 2',3' 29.6 68 0.0015 28.0 3.5 17 9-25 46-62 (626)
132 PF10509 GalKase_gal_bdg: Gala 28.8 29 0.00064 20.1 0.8 11 52-62 23-34 (52)
133 COG5555 Cytolysin, a secreted 28.0 59 0.0013 26.2 2.6 52 9-61 125-184 (392)
134 cd01175 IPT_COE IPT domain of 26.8 42 0.0009 21.8 1.3 13 11-23 17-29 (85)
135 cd08162 MPP_PhoA_N Synechococc 25.4 38 0.00083 26.8 1.2 15 8-22 37-51 (313)
136 PLN02962 hydroxyacylglutathion 25.0 1.2E+02 0.0026 23.2 3.9 45 13-60 145-194 (251)
137 TIGR00236 wecB UDP-N-acetylglu 24.0 52 0.0011 25.8 1.7 17 2-18 79-95 (365)
138 PLN02398 hydroxyacylglutathion 23.8 1E+02 0.0022 24.8 3.4 44 13-60 201-247 (329)
139 KOG4419 5' nucleotidase [Nucle 21.2 81 0.0018 27.6 2.4 53 3-61 80-135 (602)
No 1
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=216.46 Aligned_cols=130 Identities=69% Similarity=1.201 Sum_probs=121.8
Q ss_pred ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839 1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC 80 (131)
Q Consensus 1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~ 80 (131)
||+++++.+.||||++|||||.+|+.+..||+|+.+|+.+|+.++|+.|||.|+||||++|+++||+.+.+++.++||.|
T Consensus 67 mg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c 146 (336)
T KOG2679|consen 67 MGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWIC 146 (336)
T ss_pred HHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceec
Confidence 78999999999999999999999999999999999999999999999999999999999999999999777888999999
Q ss_pred cceEEecCCeEEEEEEeCCcCcccccCCCCCCCCcccccchhHHHHHHhh
Q 040839 81 SRSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVYQRKEYLSDLL 130 (131)
Q Consensus 81 p~~~~~~~~~v~~~~lDT~~~~~~y~~~~~~~~~~w~~~~~~~~~~~~~~ 130 (131)
|+.|+++...|.++++||.+|+.+|..-+...-++|.....|..|++.++
T Consensus 147 ~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l 196 (336)
T KOG2679|consen 147 PRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRALL 196 (336)
T ss_pred ccHHhhcceeeeeeccccccchhhheecccccccccccCChHHHHHHHHH
Confidence 99988887889999999999999888766666789999999999988775
No 2
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.96 E-value=1e-29 Score=204.57 Aligned_cols=118 Identities=23% Similarity=0.487 Sum_probs=95.5
Q ss_pred ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCC--CCCceEEeCCCcccCCCchhhcCccc-------
Q 040839 1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPS--LQKQWYNVLGNHDYRGDVEAQLSPVL------- 71 (131)
Q Consensus 1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~--l~~p~~~vlGNHD~~~~~~aq~~~~~------- 71 (131)
|+++|++.+|+|||++|||| ++|+.+.+||+|++.||++|..++ |++|||+|+|||||+|+..||+++..
T Consensus 49 M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~ 127 (394)
T PTZ00422 49 LKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGH 127 (394)
T ss_pred HHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccc
Confidence 78999999999999999999 899999999999999999998877 99999999999999999999986311
Q ss_pred ----------cccCCCCcccc-eEEe-----------------cCCeEEEEEEeCCcCcccccCCCCCCCCcccccc
Q 040839 72 ----------TRKDSRWLCSR-SFIL-----------------DAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRGVY 120 (131)
Q Consensus 72 ----------~~~~~~w~~p~-~~~~-----------------~~~~v~~~~lDT~~~~~~y~~~~~~~~~~w~~~~ 120 (131)
+..++||.||+ +|.+ .+..|+||||||+++...|. .+...+.+|..+.
T Consensus 128 ~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~-~~~~~~~~w~~L~ 203 (394)
T PTZ00422 128 GQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFP-YKKVSERAWQDLK 203 (394)
T ss_pred cccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECchhcccCC-ccccCHHHHHHHH
Confidence 12369999995 5532 12459999999999987543 2233445565433
No 3
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.83 E-value=3.8e-20 Score=142.15 Aligned_cols=105 Identities=41% Similarity=0.795 Sum_probs=83.5
Q ss_pred ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839 1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC 80 (131)
Q Consensus 1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~ 80 (131)
|.+++++.+|||||++||++|..|..+..+++|...|++++....+++|||++|||||+.++..++..+......++|.+
T Consensus 24 ~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~ 103 (277)
T cd07378 24 MAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTM 103 (277)
T ss_pred HHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccC
Confidence 45677778999999999999999998877889988888888644468999999999999988777766521112688988
Q ss_pred cc-eEEecCC------eEEEEEEeCCcCcccc
Q 040839 81 SR-SFILDAE------IAEFVFVDTTPFVDEY 105 (131)
Q Consensus 81 p~-~~~~~~~------~v~~~~lDT~~~~~~y 105 (131)
|. +|++..+ .++||+|||+.+.+.+
T Consensus 104 ~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~ 135 (277)
T cd07378 104 PAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNS 135 (277)
T ss_pred cchheEEEeecCCCCCEEEEEEEeChhHcCcc
Confidence 84 6666544 7999999999876544
No 4
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.28 E-value=2.1e-11 Score=94.28 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=55.6
Q ss_pred cCCCEEEEcCCccCCCCCCCC-CChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccc-----cccCCCCcc-
Q 040839 8 LEIDFVISTGDNFYEDGLTGE-DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVL-----TRKDSRWLC- 80 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~-~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~-----~~~~~~w~~- 80 (131)
.+|||||++||++|..|..+. ....|...++.+. ..+|+++++||||+............ .........
T Consensus 32 ~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~----~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (294)
T cd00839 32 GNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLA----SYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTS 107 (294)
T ss_pred CCccEEEEcCchhhhcCCccchhHHHHHHHHHHHH----hcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCC
Confidence 789999999999998876421 1223333333222 35999999999999764332221100 000011111
Q ss_pred cceEEecCCeEEEEEEeCCcC
Q 040839 81 SRSFILDAEIAEFVFVDTTPF 101 (131)
Q Consensus 81 p~~~~~~~~~v~~~~lDT~~~ 101 (131)
+.+|+++.+.++||+|||...
T Consensus 108 ~~~Ysf~~g~v~fi~Lds~~~ 128 (294)
T cd00839 108 NLWYSFDVGPVHFVSLSTEVD 128 (294)
T ss_pred CceEEEeeCCEEEEEEecccc
Confidence 246888888999999999754
No 5
>PLN02533 probable purple acid phosphatase
Probab=99.17 E-value=1.2e-10 Score=95.55 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=58.0
Q ss_pred hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchh-hcCccccccCCCCccc---
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA-QLSPVLTRKDSRWLCS--- 81 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~a-q~~~~~~~~~~~w~~p--- 81 (131)
.+.+|||||++||+.|.++. ..+|.. |.+....-...+|+++++||||....... ...+ .....+|.||
T Consensus 162 ~~~~pD~vl~~GDl~y~~~~----~~~wd~-f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f--~~y~~rf~mP~~~ 234 (427)
T PLN02533 162 SKWDYDVFILPGDLSYANFY----QPLWDT-FGRLVQPLASQRPWMVTHGNHELEKIPILHPEKF--TAYNARWRMPFEE 234 (427)
T ss_pred HhcCCCEEEEcCccccccch----HHHHHH-HHHHhhhHhhcCceEEeCccccccccccccCcCc--cchhhcccCCccc
Confidence 45689999999999996532 345544 33222211235999999999998743111 1111 1224678876
Q ss_pred ------ceEEecCCeEEEEEEeCCc
Q 040839 82 ------RSFILDAEIAEFVFVDTTP 100 (131)
Q Consensus 82 ------~~~~~~~~~v~~~~lDT~~ 100 (131)
.+|+|+.+.++||+|||..
T Consensus 235 ~g~~~~~yYSfd~g~vhfI~Lds~~ 259 (427)
T PLN02533 235 SGSTSNLYYSFNVYGVHIIMLGSYT 259 (427)
T ss_pred cCCCCCceEEEEECCEEEEEEeCCc
Confidence 2677998999999999963
No 6
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.09 E-value=1.2e-10 Score=89.82 Aligned_cols=95 Identities=23% Similarity=0.287 Sum_probs=58.5
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHH---HHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcc
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLD---SFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLC 80 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~ 80 (131)
+.+..+||+||++||.+- .|- ...+.+|.+ .|.+++......+|++.||||||........... .+...++..
T Consensus 40 ~~~~l~PD~vv~lGDL~d-~G~-~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~--~~rf~~~Fg 115 (257)
T cd08163 40 MQKQLKPDSTIFLGDLFD-GGR-DWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPV--RQRFEKYFG 115 (257)
T ss_pred HHHhcCCCEEEEeccccc-CCe-eCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHH--HHHHHHHhC
Confidence 455679999999999863 333 224566654 3556664322358999999999985431111000 011112223
Q ss_pred cceEEecCCeEEEEEEeCCcCc
Q 040839 81 SRSFILDAEIAEFVFVDTTPFV 102 (131)
Q Consensus 81 p~~~~~~~~~v~~~~lDT~~~~ 102 (131)
+.++.+..+.++||+|||..+.
T Consensus 116 ~~~~~~~~~~~~fV~Lds~~l~ 137 (257)
T cd08163 116 PTSRVIDVGNHTFVILDTISLS 137 (257)
T ss_pred CCceEEEECCEEEEEEcccccc
Confidence 3466777788999999998654
No 7
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.06 E-value=6.4e-10 Score=85.66 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=54.4
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCccc-ceEE
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCS-RSFI 85 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p-~~~~ 85 (131)
+.+||+||.+||.+...... .+.++. .+.+++. .+++|++.+|||||+.......... ......+ .+|+
T Consensus 38 ~~~~d~vv~~GDlv~~~~~~--~~~~~~-~~~~~l~--~l~~p~~~v~GNHD~~~~~~~~~~~-----~~~~~~~~~yys 107 (267)
T cd07396 38 RESLDFVVQLGDIIDGDNAR--AEEALD-AVLAILD--RLKGPVHHVLGNHDLYNPSREYLLL-----YTLLGLGAPYYS 107 (267)
T ss_pred cCCCCEEEECCCeecCCCch--HHHHHH-HHHHHHH--hcCCCEEEecCccccccccHhhhhc-----ccccCCCCceEE
Confidence 45699999999988533211 122333 3444543 5789999999999997543222210 0122233 5778
Q ss_pred ecCCeEEEEEEeCCcC
Q 040839 86 LDAEIAEFVFVDTTPF 101 (131)
Q Consensus 86 ~~~~~v~~~~lDT~~~ 101 (131)
+..+.++|++|||...
T Consensus 108 f~~~~~~~i~lds~~~ 123 (267)
T cd07396 108 FSPGGIRFIVLDGYDI 123 (267)
T ss_pred EecCCcEEEEEeCCcc
Confidence 8878999999999754
No 8
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.02 E-value=7.5e-10 Score=84.61 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=52.1
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchh--hcCccccccCCCCcccceEEe
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA--QLSPVLTRKDSRWLCSRSFIL 86 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~a--q~~~~~~~~~~~w~~p~~~~~ 86 (131)
+|+|||++||.+...........+ ...+.+++..-..++|++.++||||....... ...+ ...| .+.+|++
T Consensus 49 ~pd~ii~~GDl~~~~~~~~~~~~~-~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f-----~~~~-g~~~y~~ 121 (262)
T cd07395 49 KPKFVVVCGDLVNAMPGDELRERQ-VSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDY-----RDVF-GDDYFSF 121 (262)
T ss_pred CCCEEEEeCCcCCCCcchhhHHHH-HHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHH-----HHHh-CCcceEE
Confidence 899999999998644321111122 23355555422236999999999998532111 0111 0112 2456777
Q ss_pred cCCeEEEEEEeCCcC
Q 040839 87 DAEIAEFVFVDTTPF 101 (131)
Q Consensus 87 ~~~~v~~~~lDT~~~ 101 (131)
..+.++||+|||..+
T Consensus 122 ~~~~~~~i~lds~~~ 136 (262)
T cd07395 122 WVGGVFFIVLNSQLF 136 (262)
T ss_pred EECCEEEEEeccccc
Confidence 768899999999854
No 9
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.01 E-value=7.1e-10 Score=85.16 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=54.5
Q ss_pred hhhhcCCCEEEEcCCccC---CCCCCCCCCh-HHHHHHHhhcCC-CCC-CCceEEeCCCcccCCCch--hhcCccccccC
Q 040839 4 IGEKLEIDFVISTGDNFY---EDGLTGEDDP-AFLDSFTSIYTA-PSL-QKQWYNVLGNHDYRGDVE--AQLSPVLTRKD 75 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y---~~G~~~~~d~-~~~~~~~~~~~~-~~l-~~p~~~vlGNHD~~~~~~--aq~~~~~~~~~ 75 (131)
..++.+||+||.+||.+- ..+++...++ +|. .|.+.+.. ..+ ++||+.++||||..+... ....+ +.+ .
T Consensus 28 ~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~-~~~-y 104 (256)
T cd07401 28 FIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQ-KYYNILKESSVINKEKWFDIRGNHDLFNIPSLDSENNY-YRK-Y 104 (256)
T ss_pred HHHhhCCCEEEEccccccccccCCCcccccHHHHH-HHHHHHHHhCCCCcceEEEeCCCCCcCCCCCccchhhH-HHH-h
Confidence 345678999999999663 2233222333 343 45544422 123 599999999999975322 22222 111 1
Q ss_pred CCCcc-cc-eEE--ecCCeEEEEEEeCCcC
Q 040839 76 SRWLC-SR-SFI--LDAEIAEFVFVDTTPF 101 (131)
Q Consensus 76 ~~w~~-p~-~~~--~~~~~v~~~~lDT~~~ 101 (131)
.++.+ +. +|. ...+.++||+|||..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~ 134 (256)
T cd07401 105 SATGRDGSFSFSHTTRFGNYSFIGVDPTLF 134 (256)
T ss_pred heecCCCccceEEEecCCCEEEEEEcCccC
Confidence 22322 32 232 2347899999999864
No 10
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.99 E-value=2.3e-09 Score=85.16 Aligned_cols=118 Identities=24% Similarity=0.417 Sum_probs=70.8
Q ss_pred ChhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCCchh--------hcCccc
Q 040839 1 MGLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGDVEA--------QLSPVL 71 (131)
Q Consensus 1 m~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~~~a--------q~~~~~ 71 (131)
|.++.+.++||+||++|||++..-. .|. ++.+..+.++ .+-+|||.+++||||-.+.+.. ++.++.
T Consensus 92 ~~rvL~sE~PDlVVfTGD~i~g~~t---~Da--~~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~lP~s~ 166 (379)
T KOG1432|consen 92 VSRVLASEKPDLVVFTGDNIFGHST---QDA--ATSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISKLPYSL 166 (379)
T ss_pred HHHHHhccCCCEEEEeCCccccccc---HhH--HHHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhcCCCcc
Confidence 4577889999999999999985322 233 3445544432 2557999999999999876432 233333
Q ss_pred cccCCC--Ccc---c-ceEE--ec---------CCeEEEEEEeCCcCcccccCCC-CCCCCcccccchhHHHHHH
Q 040839 72 TRKDSR--WLC---S-RSFI--LD---------AEIAEFVFVDTTPFVDEYFQDP-GDSTYDWRGVYQRKEYLSD 128 (131)
Q Consensus 72 ~~~~~~--w~~---p-~~~~--~~---------~~~v~~~~lDT~~~~~~y~~~~-~~~~~~w~~~~~~~~~~~~ 128 (131)
.+.++. +.. . .+|. +. .....++|||+... ..++ ....|+|..-+ |.++++.
T Consensus 167 ~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~lyfld~~~~----~s~~~~~~~Ydwik~s-q~~wl~~ 236 (379)
T KOG1432|consen 167 SQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLYFLDSSSY----TSVPPLLPGYDWIKES-QLEWLSD 236 (379)
T ss_pred ccCCCcccceeeeecccceEEEeccCCCcccccCceeeEEEEecCCc----ccccccccCccchhhh-hHHHHhh
Confidence 222211 110 1 1222 11 12567899999753 3333 45667888666 6666653
No 11
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=98.93 E-value=8e-09 Score=77.49 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=50.8
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceEEecC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILDA 88 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~~~~~ 88 (131)
+||+||++||.+... .+...+.+.+.+. .+++|++.|+||||.......... .. ..-..+.+|.+..
T Consensus 40 ~~d~vi~~GDl~~~~------~~~~~~~~~~~l~--~~~~p~~~v~GNHD~~~~~~~~~~----~~-~~~~~~~~~~~~~ 106 (240)
T cd07402 40 RPDLVLVTGDLTDDG------SPESYERLRELLA--ALPIPVYLLPGNHDDRAAMRAVFP----EL-PPAPGFVQYVVDL 106 (240)
T ss_pred CCCEEEECccCCCCC------CHHHHHHHHHHHh--hcCCCEEEeCCCCCCHHHHHHhhc----cc-cccccccceeEec
Confidence 899999999988532 2332334555543 468999999999998643222111 10 0001124677887
Q ss_pred CeEEEEEEeCCc
Q 040839 89 EIAEFVFVDTTP 100 (131)
Q Consensus 89 ~~v~~~~lDT~~ 100 (131)
+.++|++|||..
T Consensus 107 ~~~~~i~lds~~ 118 (240)
T cd07402 107 GGWRLILLDSSV 118 (240)
T ss_pred CCEEEEEEeCCC
Confidence 899999999975
No 12
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=98.79 E-value=2e-08 Score=78.07 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=51.9
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHH---HHHHHhhcCCCCCCCceEEeCCCcccCCCc--hh--hcCccccccCCCCc-
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAF---LDSFTSIYTAPSLQKQWYNVLGNHDYRGDV--EA--QLSPVLTRKDSRWL- 79 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~---~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~--~a--q~~~~~~~~~~~w~- 79 (131)
.+|||||++||++............. ...+.+.+.....++|+++++||||..... .. .....+......|.
T Consensus 67 ~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~ 146 (296)
T cd00842 67 PKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKS 146 (296)
T ss_pred CCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHh
Confidence 38999999999997554322111111 122223332222459999999999996421 00 00000000011121
Q ss_pred -c----------cceEEec-CCeEEEEEEeCCcCcc
Q 040839 80 -C----------SRSFILD-AEIAEFVFVDTTPFVD 103 (131)
Q Consensus 80 -~----------p~~~~~~-~~~v~~~~lDT~~~~~ 103 (131)
+ ..+|++. .+.+++|+|||+.+..
T Consensus 147 ~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~ 182 (296)
T cd00842 147 WLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYK 182 (296)
T ss_pred hcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccc
Confidence 1 1356655 6889999999997543
No 13
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.7e-08 Score=82.78 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=67.0
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCccc------
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCS------ 81 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p------ 81 (131)
.++|+|+++||..|..+-.+ ++|.+ |-+....-.-.+||-++.|||+......- . ...-..||.||
T Consensus 173 ~k~d~vlhiGDlsYa~~~~n---~~wD~-f~r~vEp~As~vPymv~~GNHE~d~~~~~--~--F~~y~~Rf~mP~~~s~s 244 (452)
T KOG1378|consen 173 LKPDAVLHIGDLSYAMGYSN---WQWDE-FGRQVEPIASYVPYMVCSGNHEIDWPPQP--C--FVPYSARFNMPGNSSES 244 (452)
T ss_pred cCCcEEEEecchhhcCCCCc---cchHH-HHhhhhhhhccCceEEecccccccCCCcc--c--ccccceeeccCCCcCCC
Confidence 36999999999999887764 45544 33222222346999999999998643111 1 22335788887
Q ss_pred ---ceEEecCCeEEEEEEeCCcCcccccCCCCCCCCcccc
Q 040839 82 ---RSFILDAEIAEFVFVDTTPFVDEYFQDPGDSTYDWRG 118 (131)
Q Consensus 82 ---~~~~~~~~~v~~~~lDT~~~~~~y~~~~~~~~~~w~~ 118 (131)
.+|+++.|.|+||+|+|.-.- -...+..|+.|..
T Consensus 245 ~~~l~YSfd~G~vhfv~lsse~~~---~~~~~~~QY~WL~ 281 (452)
T KOG1378|consen 245 DSNLYYSFDVGGVHFVVLSTETYY---NFLKGTAQYQWLE 281 (452)
T ss_pred CCceeEEEeeccEEEEEEeccccc---cccccchHHHHHH
Confidence 368899999999999997431 1233455666653
No 14
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.73 E-value=3.5e-08 Score=76.22 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=48.4
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceEEec
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSFILD 87 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~~~~ 87 (131)
.+|||||.+||.+.. ..++-...+.+.+. .+++|+|.+|||||........... ..+. +.++.+.
T Consensus 54 ~~~D~vvitGDl~~~------~~~~~~~~~~~~l~--~l~~Pv~~v~GNHD~~~~~~~~~~~------~~~~-~~~~~~~ 118 (275)
T PRK11148 54 HEFDLIVATGDLAQD------HSSEAYQHFAEGIA--PLRKPCVWLPGNHDFQPAMYSALQD------AGIS-PAKHVLI 118 (275)
T ss_pred CCCCEEEECCCCCCC------CCHHHHHHHHHHHh--hcCCcEEEeCCCCCChHHHHHHHhh------cCCC-ccceEEe
Confidence 469999999998741 12333344555543 5689999999999986432222210 1111 2233344
Q ss_pred CCeEEEEEEeCCc
Q 040839 88 AEIAEFVFVDTTP 100 (131)
Q Consensus 88 ~~~v~~~~lDT~~ 100 (131)
++.++||+|||+.
T Consensus 119 ~~~~~~i~Lds~~ 131 (275)
T PRK11148 119 GEHWQILLLDSQV 131 (275)
T ss_pred cCCEEEEEecCCC
Confidence 5679999999974
No 15
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.53 E-value=8.3e-08 Score=70.67 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=37.1
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCCc
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGDV 63 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~~ 63 (131)
++.++.+||+||++||+++...... +.+..+++++.. ...++|+++++||||..+-+
T Consensus 35 ~~~~~~~~d~vv~~GDl~~~~~~~~----~~~~~~~~~~~~l~~~~~p~~~~~GNHD~~g~l 92 (199)
T cd07383 35 RVLDAEKPDLVVLTGDLITGENTND----NSTSALDKAVSPMIDRKIPWAATFGNHDGYDWI 92 (199)
T ss_pred HHHhhcCCCEEEECCccccCCCCch----HHHHHHHHHHHHHHHcCCCEEEECccCCCCCCC
Confidence 3456778999999999997554321 112223333211 23579999999999976643
No 16
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.41 E-value=5.9e-07 Score=66.84 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=38.9
Q ss_pred hhcCCCEEEEcCCccCCCCCCCCCChHHHHH---HHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDS---FTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
...+||+||++||.+. .|... .+.+|.+. |..++.. ...+|++.++||||..+.
T Consensus 39 ~~l~PD~Vi~lGDL~D-~G~~~-~~~e~~e~l~Rf~~If~~-~~~~~~~~VpGNHDIG~~ 95 (195)
T cd08166 39 NFVQPDIVIFLGDLMD-EGSIA-NDDEYYSYVQRFINIFEV-PNGTKIIYLPGDNDIGGE 95 (195)
T ss_pred hccCCCEEEEeccccC-CCCCC-CHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCCcCCC
Confidence 4568999999999884 44432 35556664 5566642 446999999999999863
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.37 E-value=1.9e-07 Score=63.48 Aligned_cols=55 Identities=25% Similarity=0.305 Sum_probs=33.8
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
..+.+.++|+||++||.++..+... .....+..........+|++.++||||+..
T Consensus 25 ~~~~~~~~d~ii~~GD~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 25 EIAAENKPDFIIFLGDLVDGGNPSE----EWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp HHHHHTTTSEEEEESTSSSSSSHHH----HHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred HHhccCCCCEEEeeccccccccccc----cchhhhccchhhhhccccccccccccccce
Confidence 3456789999999999987543321 111111001111245799999999999975
No 18
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.28 E-value=1.1e-06 Score=71.63 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=59.7
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHH---HHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCc---c
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDS---FTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWL---C 80 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~---~ 80 (131)
-.+||+++++||.| +.|-- .++++|++. |.++|. ....+|+..++||||..+.-...... -.||. .
T Consensus 91 ~lkPdvvffLGDLf-DeG~~-~~~eEf~~~~~RfkkIf~-~k~~~~~~~i~GNhDIGf~~~~~~~~-----i~Rfe~~fg 162 (410)
T KOG3662|consen 91 RLKPDVVFFLGDLF-DEGQW-AGDEEFKKRYERFKKIFG-RKGNIKVIYIAGNHDIGFGNELIPEW-----IDRFESVFG 162 (410)
T ss_pred ccCCCEEEEecccc-ccCcc-CChHHHHHHHHHHHHhhC-CCCCCeeEEeCCccccccccccchhH-----HHHHHHhhc
Confidence 36899999999977 44443 367888877 557775 45789999999999998642111110 01221 2
Q ss_pred cceEEecCCeEEEEEEeCCcCcc
Q 040839 81 SRSFILDAEIAEFVFVDTTPFVD 103 (131)
Q Consensus 81 p~~~~~~~~~v~~~~lDT~~~~~ 103 (131)
|..-.++.+++.|+++|++.+..
T Consensus 163 ~~~r~f~v~~~tf~~~d~~~ls~ 185 (410)
T KOG3662|consen 163 PTERRFDVGNLTFVMFDSNALSG 185 (410)
T ss_pred chhhhhccCCceeEEeeehhhcC
Confidence 33444666789999999987543
No 19
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.28 E-value=7.8e-07 Score=64.63 Aligned_cols=57 Identities=32% Similarity=0.412 Sum_probs=37.6
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHH---HHHhhcCCCC---CCCceEEeCCCcccCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLD---SFTSIYTAPS---LQKQWYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~~~---l~~p~~~vlGNHD~~~ 61 (131)
.+.++.+||+||++||.|.. |... ....|.+ .|.+++.... ..+|++.|+||||...
T Consensus 39 ~~i~~~~pd~vi~lGDl~d~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 39 TALQRLKPDVVLFLGDLFDG-GRIA-DSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred HHHHhcCCCEEEEeccccCC-cEeC-CHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 45567899999999998853 2221 2233443 3445554222 2689999999999975
No 20
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.26 E-value=1.8e-06 Score=61.77 Aligned_cols=55 Identities=29% Similarity=0.291 Sum_probs=35.8
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHH---HHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLD---SFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
+.++.+||+||++||.+.. +.. ..+..|.. .|.+.+. ....+|++.++||||..+
T Consensus 33 ~i~~~~pd~vv~~GDl~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 33 SLWLLQPDVVFVLGDLFDE-GKW-STDEEWEDYVERFKKMFG-HPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred HHHhcCCCEEEECCCCCCC-Ccc-CCHHHHHHHHHHHHHHhc-cCCCCeEEEEcCCCCcCC
Confidence 3456899999999998853 222 12334433 2444442 123689999999999864
No 21
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.17 E-value=5.3e-06 Score=61.48 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=33.3
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
+.+.+||+|+.+||.+....... ..+.+.+..-...+|+++++||||+...
T Consensus 28 ~~~~~~d~vl~~GD~~~~~~~~~-------~~~~~~l~~l~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 28 INALKPDLVVLTGDLVDGSVDVL-------ELLLELLKKLKAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred HhccCCCEEEEcCcccCCcchhh-------HHHHHHHhccCCCCCEEEECCCcccccC
Confidence 44578999999999886432211 1222333221235899999999999754
No 22
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.17 E-value=1.9e-06 Score=63.53 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=35.4
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccCCC
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~~~ 62 (131)
.+.+.+||+||.+||.|..... ..+....+.+.+.. ...++|+++++||||+...
T Consensus 36 ~~~~~~~d~i~~~GD~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 36 LAIEEKVDFVLIAGDLFDSNNP----SPEALELLIEALRRLKEAGIPVFIIAGNHDSPSR 91 (223)
T ss_pred HHHhcCCCEEEECCcccCCCCC----CHHHHHHHHHHHHHHHHCCCCEEEecCCCCCccc
Confidence 4567799999999998854321 12222223333321 1137999999999999864
No 23
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.13 E-value=5.2e-06 Score=61.74 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=38.5
Q ss_pred hhcCCCEEEEcCCccCCCCCCCCCChHHHHH---HHhhcCCCCC----------------CCceEEeCCCcccCC
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDS---FTSIYTAPSL----------------QKQWYNVLGNHDYRG 61 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---~~~~~~~~~l----------------~~p~~~vlGNHD~~~ 61 (131)
.-.+||.|++|||.| ++|- .+|.+|++. |.+++..... ++|++.|+||||...
T Consensus 41 ~~l~Pd~V~fLGDLf-d~~w--~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 41 FWLKPDAVVVLGDLF-SSQW--IDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HhcCCCEEEEecccc-CCCc--ccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 456899999999998 4553 367777666 4455532211 489999999999975
No 24
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.12 E-value=2.8e-06 Score=67.89 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=35.1
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHH-HHhhcCCCCCCCceEEeCCCcccC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDS-FTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~-~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
..|.+++||+||++||.|-...........+... +.+.. ...++|+++++||||..
T Consensus 33 ~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L--~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 33 EYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLL--KEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHH--HHCCCeEEEEccCCCcc
Confidence 4577899999999999874332222111222222 22222 23579999999999975
No 25
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.11 E-value=2.9e-06 Score=68.59 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=36.8
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~~ 61 (131)
+.|.+.++||||..||.|- .+.++. +-...+.+.+. ....++|+|++.||||...
T Consensus 34 ~~a~~~~vD~vliAGDlFd-~~~Ps~---~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 34 EIAKEEKVDFVLIAGDLFD-TNNPSP---RALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHccCCEEEEcccccc-CCCCCH---HHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 4678899999999999774 444432 22222332221 1235799999999999975
No 26
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.07 E-value=3.5e-06 Score=68.94 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=34.6
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccCCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~~~ 62 (131)
..+.+.+||+||.+||.| +.+.++ ......+.+... ....++|+++|+||||....
T Consensus 33 ~~i~~~~~D~viIaGDif-D~~~p~---~~a~~~~~~~l~~L~~~~~~v~~I~GNHD~~~~ 89 (407)
T PRK10966 33 EQVQEHQVDAIIVAGDIF-DTGSPP---SYARELYNRFVVNLQQTGCQLVVLAGNHDSVAT 89 (407)
T ss_pred HHHHhcCCCEEEECCccc-cCCCCc---HHHHHHHHHHHHHHHhcCCcEEEEcCCCCChhh
Confidence 345678999999999966 444322 111122222211 12357899999999998753
No 27
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=4e-06 Score=64.39 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=33.3
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCC-ChHHHHHHHhhcCCCCCC-CceEEeCCCcccCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGED-DPAFLDSFTSIYTAPSLQ-KQWYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~~~~~~~~l~-~p~~~vlGNHD~~~ 61 (131)
..+.+++||+||.+||.|- ...++.. ...+...+..+- ... +|+++++||||...
T Consensus 33 ~~~~~~~~D~lli~GDi~d-~~~p~~~~~~~~~~~l~~l~---~~~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 33 EFAKAEQIDALLVAGDVFD-TANPPAEAQELFNAFFRNLS---DANPIPIVVISGNHDSAQ 89 (253)
T ss_pred HHHHHcCCCEEEECCccCC-CCCCCHHHHHHHHHHHHHHH---hcCCceEEEEccCCCChh
Confidence 3566789999999999774 3222111 111222222221 233 99999999999864
No 28
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.04 E-value=7.3e-06 Score=56.90 Aligned_cols=50 Identities=28% Similarity=0.284 Sum_probs=30.9
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCccc
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDY 59 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~ 59 (131)
..++.+||+|+.+||.++.... .++ ..+.+.+.. ....+|++.++||||.
T Consensus 30 ~~~~~~~d~vi~~GDl~~~~~~-----~~~-~~~~~~~~~l~~~~~~~~~v~GNHD~ 80 (144)
T cd07400 30 EIKALDPDLVVITGDLTQRGLP-----EEF-EEAREFLDALPAPLEPVLVVPGNHDV 80 (144)
T ss_pred HHhccCCCEEEECCCCCCCCCH-----HHH-HHHHHHHHHccccCCcEEEeCCCCeE
Confidence 3456789999999998864311 122 223233321 1112699999999996
No 29
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.01 E-value=5.7e-06 Score=61.89 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=31.8
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
+.+.+||+||.+||.+... . ...+|.. +.+.+.. ...++|++.++||||..
T Consensus 31 ~~~~~~d~iv~~GDl~~~~-~---~~~~~~~-~~~~~~~l~~~~~p~~~~~GNHD~~ 82 (214)
T cd07399 31 AEALNIAFVLHLGDIVDDG-D---NDAEWEA-ADKAFARLDKAGIPYSVLAGNHDLV 82 (214)
T ss_pred HHHcCCCEEEECCCccCCC-C---CHHHHHH-HHHHHHHHHHcCCcEEEECCCCcch
Confidence 4457899999999987422 1 1123333 2223221 12359999999999964
No 30
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.00 E-value=5e-06 Score=55.12 Aligned_cols=50 Identities=26% Similarity=0.208 Sum_probs=32.7
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
..++.++++||.+||.++..+.... ..+.. ........+|++.++||||.
T Consensus 21 ~~~~~~~~~vi~~GD~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~GNHDi 70 (131)
T cd00838 21 LAAAEKPDFVLVLGDLVGDGPDPEE--VLAAA----LALLLLLGIPVYVVPGNHDI 70 (131)
T ss_pred HhcccCCCEEEECCcccCCCCCchH--HHHHH----HHHhhcCCCCEEEeCCCceE
Confidence 3556889999999999975533211 11110 11113567999999999993
No 31
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.98 E-value=1.1e-05 Score=58.20 Aligned_cols=55 Identities=16% Similarity=0.020 Sum_probs=34.9
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
++.++.+||.||.+||.++..... .+....... .......++|++.++||||..-
T Consensus 35 ~~~~~~~~d~lii~GDl~~~~~~~---~~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 35 RLIEEYGPERLIILGDLKHSFGGL---SRQEFEEVA-FLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred HHHHhcCCCEEEEeCccccccccc---CHHHHHHHH-HHHhccCCCeEEEEcccCccch
Confidence 456678999999999999644322 122222121 1111245689999999999853
No 32
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.92 E-value=4.3e-05 Score=58.09 Aligned_cols=83 Identities=19% Similarity=0.125 Sum_probs=46.7
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCccccccCCCCcccceE-E
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRWLCSRSF-I 85 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w~~p~~~-~ 85 (131)
..+||+||.+||.... |. +.-...+.+......+..|++.+|||||.+......... ..+...... .
T Consensus 31 ~~~~D~~v~tGDl~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~~~~~~~~~~------~~~~~~~~~~~ 98 (301)
T COG1409 31 QLKPDLLVVTGDLTND-GE-----PEEYRRLKELLARLELPAPVIVVPGNHDARVVNGEAFSD------QFFNRYAVLVG 98 (301)
T ss_pred cCCCCEEEEccCcCCC-CC-----HHHHHHHHHHHhhccCCCceEeeCCCCcCCchHHHHhhh------hhcccCcceEe
Confidence 4678999999996532 22 222222333332235778999999999987532222211 001100111 1
Q ss_pred ecC-CeEEEEEEeCCcC
Q 040839 86 LDA-EIAEFVFVDTTPF 101 (131)
Q Consensus 86 ~~~-~~v~~~~lDT~~~ 101 (131)
... +.++++.+||...
T Consensus 99 ~~~~~~~~~~~~d~~~~ 115 (301)
T COG1409 99 ACSSGGWRVIGLDSSVP 115 (301)
T ss_pred eccCCceEEEEecCCCC
Confidence 222 5789999999864
No 33
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.92 E-value=3.1e-05 Score=58.63 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=43.3
Q ss_pred hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCc-hhhcCccccccCCCCcccceE
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDV-EAQLSPVLTRKDSRWLCSRSF 84 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~-~aq~~~~~~~~~~~w~~p~~~ 84 (131)
.+.++|+||.+||.+-. . ++....++.+.. ...+|+|.++||||+.... ..+..-.. ...+......
T Consensus 29 ~~~~~d~vv~~GDl~~~-~------~~~~~~~~~l~~--~~~~pv~~v~GNHD~~~~~~~~~~~~~~---~~~~l~~~~~ 96 (239)
T TIGR03729 29 KKQKIDHLHIAGDISND-F------QRSLPFIEKLQE--LKGIKVTFNAGNHDMLKDLTYEEIESND---SPLYLHNRFI 96 (239)
T ss_pred HhcCCCEEEECCccccc-h------hhHHHHHHHHHH--hcCCcEEEECCCCCCCCCCCHHHHHhcc---chhhhccccc
Confidence 45689999999997621 1 122222222221 1458999999999986221 11111000 1112111233
Q ss_pred EecCCeEEEEEEeC
Q 040839 85 ILDAEIAEFVFVDT 98 (131)
Q Consensus 85 ~~~~~~v~~~~lDT 98 (131)
.+..+.++|+.++-
T Consensus 97 ~~~~~~~~~ig~~g 110 (239)
T TIGR03729 97 DIPNTQWRIIGNNG 110 (239)
T ss_pred ccCCCceEEEeecc
Confidence 35456789998883
No 34
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=97.91 E-value=5.8e-05 Score=56.33 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=36.7
Q ss_pred hhcCCCEEEEcCCccCCCCCCCC----------------CCh-HHHHHHHhhcCCCCC-----CCceEEeCCCcccCC
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGE----------------DDP-AFLDSFTSIYTAPSL-----QKQWYNVLGNHDYRG 61 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~----------------~d~-~~~~~~~~~~~~~~l-----~~p~~~vlGNHD~~~ 61 (131)
.+.+||++|++||+||.+++... .+. .+...+......+.+ ++|++++.-+||+..
T Consensus 26 ~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~~ 103 (228)
T cd07389 26 SEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGD 103 (228)
T ss_pred cccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHhhcCCEEEecccccccc
Confidence 47899999999999999975321 112 222222222222222 589999999999974
No 35
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.90 E-value=2e-05 Score=56.48 Aligned_cols=48 Identities=23% Similarity=0.095 Sum_probs=31.5
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
+.+.+||+||.+||... .|- +.-...+ +.. ..+++|++.|+||||...
T Consensus 19 ~~~~~~D~vv~~GDl~~-~~~-----~~~~~~~-~~l--~~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 19 LKAEEADAVIVAGDITN-FGG-----KEAAVEI-NLL--LAIGVPVLAVPGNCDTPE 66 (188)
T ss_pred hhccCCCEEEECCCccC-cCC-----HHHHHHH-HHH--HhcCCCEEEEcCCCCCHH
Confidence 35678999999999663 221 1111222 333 246799999999999753
No 36
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.89 E-value=1.1e-05 Score=62.34 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=30.8
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
..+.+||+|+.+||.+.... ......+.+.+...- -..|+|+|+||||+.
T Consensus 76 i~~~~pDlVli~GD~~d~~~--~~~~~~~~~~L~~L~----~~~pv~~V~GNHD~~ 125 (271)
T PRK11340 76 GIEQKPDLILLGGDYVLFDM--PLNFSAFSDVLSPLA----ECAPTFACFGNHDRP 125 (271)
T ss_pred HHhcCCCEEEEccCcCCCCc--cccHHHHHHHHHHHh----hcCCEEEecCCCCcc
Confidence 45679999999999774211 111122333232221 137999999999985
No 37
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.78 E-value=2.8e-05 Score=55.36 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=30.4
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
..+.++|+|+.+||.+.... ...+.. +... .....|+++++||||+.
T Consensus 22 ~~~~~~d~li~~GDi~~~~~-----~~~~~~-~~~~---~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 22 PIAPDADILVLAGDIGYLTD-----APRFAP-LLLA---LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CCCCCCCEEEECCCCCCCcc-----hHHHHH-HHHh---hcCCccEEEeCCCcceE
Confidence 35578999999999875321 122221 1111 13458999999999985
No 38
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=97.75 E-value=3e-05 Score=63.54 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=35.8
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCC-ChHHHHHHHh-----------------------hcC-----CC--CCCCceE
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGED-DPAFLDSFTS-----------------------IYT-----AP--SLQKQWY 51 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~~-----------------------~~~-----~~--~l~~p~~ 51 (131)
..|.++++|+||..||.|. .+.++.. --+..+.+.+ .+. .+ ..++|+|
T Consensus 36 ~~a~~~~vD~VLiaGDLFd-~~~Ps~~~~~~~~~~lr~~~~g~~p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf 114 (405)
T TIGR00583 36 QIAKEQDVDMILLGGDLFH-ENKPSRKSLYQVLRSLRLYCLGDKPCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVF 114 (405)
T ss_pred HHHHHcCCCEEEECCccCC-CCCCCHHHHHHHHHHHHHhhccCCccchhhccchhhhcccccccccccccccccCCCCEE
Confidence 4677889999999999764 4443321 1122222322 000 01 2469999
Q ss_pred EeCCCcccCC
Q 040839 52 NVLGNHDYRG 61 (131)
Q Consensus 52 ~vlGNHD~~~ 61 (131)
+|.||||...
T Consensus 115 ~I~GNHD~p~ 124 (405)
T TIGR00583 115 SIHGNHDDPS 124 (405)
T ss_pred EEcCCCCCcc
Confidence 9999999975
No 39
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=97.65 E-value=9.5e-05 Score=56.11 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=32.2
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+++.++|+||.+||..... . .++....+.+.. ..+.+|+++++||||..
T Consensus 27 ~~~~~~D~vv~~GDl~~~g-~----~~~~~~~~l~~l--~~l~~pv~~V~GNhD~~ 75 (224)
T cd07388 27 APETGADAIVLIGNLLPKA-A----KSEDYAAFFRIL--GEAHLPTFYVPGPQDAP 75 (224)
T ss_pred HhhcCCCEEEECCCCCCCC-C----CHHHHHHHHHHH--HhcCCceEEEcCCCChH
Confidence 3456899999999976521 1 233222233333 24679999999999964
No 40
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=97.57 E-value=0.00012 Score=55.39 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+||+||.+||.+. . .. .......++ .. ..+..|+|+|+||||+.
T Consensus 41 ~~D~viiaGDl~~-~-~~---~~~~~~~l~-~l--~~l~~~v~~V~GNHD~~ 84 (232)
T cd07393 41 PEDIVLIPGDISW-A-MK---LEEAKLDLA-WI--DALPGTKVLLKGNHDYW 84 (232)
T ss_pred CCCEEEEcCCCcc-C-CC---hHHHHHHHH-HH--HhCCCCeEEEeCCcccc
Confidence 8999999999762 1 11 112222222 22 13456899999999984
No 41
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=97.48 E-value=0.00024 Score=49.05 Aligned_cols=47 Identities=26% Similarity=0.252 Sum_probs=28.4
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCc-eEEeCCCcccCC
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQ-WYNVLGNHDYRG 61 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p-~~~vlGNHD~~~ 61 (131)
..++|+||.+||.+.. |. ...+ ..+.+.+. .+..| +++|+||||+..
T Consensus 17 ~~~~D~vi~~GD~~~~-~~----~~~~-~~~~~~l~--~~~~~~~~~v~GNHD~~~ 64 (135)
T cd07379 17 IPDGDVLIHAGDLTER-GT----LEEL-QKFLDWLK--SLPHPHKIVIAGNHDLTL 64 (135)
T ss_pred CCCCCEEEECCCCCCC-CC----HHHH-HHHHHHHH--hCCCCeEEEEECCCCCcC
Confidence 3579999999997632 11 1222 22333332 34444 578999999864
No 42
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.44 E-value=0.00016 Score=54.84 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=30.0
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~ 60 (131)
.+||.|+.+||.|.. .+.+.....+...+.+.+. ....++|+|.++||||..
T Consensus 31 ~~~d~l~i~GDl~d~-~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNHD~~ 83 (241)
T PRK05340 31 RQADALYILGDLFEA-WIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNRDFL 83 (241)
T ss_pred ccCCEEEEccceecc-ccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCCchh
Confidence 579999999998842 1111111122222222221 112348999999999975
No 43
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=97.43 E-value=8.5e-05 Score=61.74 Aligned_cols=56 Identities=29% Similarity=0.488 Sum_probs=35.7
Q ss_pred hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHH---------------------HHhhcCCCCCC--CceEEeCCCcc
Q 040839 2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDS---------------------FTSIYTAPSLQ--KQWYNVLGNHD 58 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~---------------------~~~~~~~~~l~--~p~~~vlGNHD 58 (131)
+.+.+..+.||+|.+|||.-..-. +.-+|+-. |.++|...-|+ +|||.|+||||
T Consensus 92 Nal~~~~p~df~is~GD~~nn~~~---nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~v~GNHD 168 (492)
T TIGR03768 92 NDLHKRDRFDFGISLGDACNSTQY---NELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQVLGNHD 168 (492)
T ss_pred HHhhcCCCceEEEeccccccchhH---HHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEEeecCCc
Confidence 345678899999999998742100 11122211 22455444566 99999999999
Q ss_pred cC
Q 040839 59 YR 60 (131)
Q Consensus 59 ~~ 60 (131)
.-
T Consensus 169 ~~ 170 (492)
T TIGR03768 169 HF 170 (492)
T ss_pred cc
Confidence 74
No 44
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.39 E-value=0.00021 Score=53.91 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=29.6
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~ 60 (131)
+||+|+.+||.|. ..+.......+.+.+.+.+. .....+|+|+++||||..
T Consensus 30 ~~d~lii~GDi~d-~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 30 KADALYILGDLFE-AWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred cCCEEEEcCceec-cccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 7999999999874 21111111122222222221 012358999999999975
No 45
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=97.37 E-value=0.00026 Score=54.26 Aligned_cols=45 Identities=29% Similarity=0.214 Sum_probs=30.2
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
..++.+||+||++||..- ...+ .++.+ ..+..|+|.++||||+..
T Consensus 20 ~l~~~~pD~Vl~~GDi~~-------~~~~---~~~~l---~~l~~p~~~V~GNHD~~~ 64 (238)
T cd07397 20 ALHLLQPDLVLFVGDFGN-------ESVQ---LVRAI---SSLPLPKAVILGNHDAWY 64 (238)
T ss_pred HHhccCCCEEEECCCCCc-------ChHH---HHHHH---HhCCCCeEEEcCCCcccc
Confidence 345678999999999641 1111 12222 245689999999999864
No 46
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.35 E-value=0.00025 Score=53.75 Aligned_cols=51 Identities=22% Similarity=0.155 Sum_probs=32.9
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
++.++.+|+.||.+||.++..+.. ..+. .+.+... .+..+++.|+||||-.
T Consensus 52 ~li~~~~~d~vIi~GDl~h~~~~~----~~~~-~~~~~l~--~~~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 52 SIADKYGIEALIINGDLKHEFKKG----LEWR-FIREFIE--VTFRDLILIRGNHDAL 102 (225)
T ss_pred HHHhhcCCCEEEEcCccccccCCh----HHHH-HHHHHHH--hcCCcEEEECCCCCCc
Confidence 345677899999999998644321 1121 1222332 2457999999999963
No 47
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=97.23 E-value=0.00028 Score=55.35 Aligned_cols=53 Identities=26% Similarity=0.284 Sum_probs=32.7
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchh
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEA 65 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~a 65 (131)
+..||+|+.+||++..... ..... +.+.+..-....++|++.|||||......
T Consensus 71 ~~~~DlivltGD~~~~~~~--~~~~~----~~~~L~~L~~~~gv~av~GNHd~~~~~~~ 123 (284)
T COG1408 71 NELPDLIVLTGDYVDGDRP--PGVAA----LALFLAKLKAPLGVFAVLGNHDYGVDRSN 123 (284)
T ss_pred hcCCCEEEEEeeeecCCCC--CCHHH----HHHHHHhhhccCCEEEEeccccccccccc
Confidence 3457999999998853111 12222 33333221235789999999999865433
No 48
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.21 E-value=0.00063 Score=52.03 Aligned_cols=56 Identities=21% Similarity=0.142 Sum_probs=41.8
Q ss_pred hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
.++.+..+|+-+|.+||+.+.-+.+......+...|.+.+... -|..+.||||-..
T Consensus 56 ~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~----evi~i~GNHD~~i 111 (235)
T COG1407 56 DRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER----EVIIIRGNHDNGI 111 (235)
T ss_pred HHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC----cEEEEeccCCCcc
Confidence 3467788999999999999888776555555555566655422 4999999999764
No 49
>PRK09453 phosphodiesterase; Provisional
Probab=97.19 E-value=0.00062 Score=49.39 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=30.3
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCC----CChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGE----DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~----~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.++.+||.|+.+||.+. .|.... .++. +.+ +.+ ..+..+++.|+||||..
T Consensus 23 ~~~~~~d~ii~lGDi~~-~~~~~~~~~~~~~~--~~~-~~l--~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 23 FAQSGADWLVHLGDVLY-HGPRNPLPEGYAPK--KVA-ELL--NAYADKIIAVRGNCDSE 76 (182)
T ss_pred HHhcCCCEEEEcccccc-cCcCCCCccccCHH--HHH-HHH--HhcCCceEEEccCCcch
Confidence 34578999999999774 232111 1111 112 222 13457899999999974
No 50
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=97.16 E-value=0.00032 Score=51.68 Aligned_cols=54 Identities=26% Similarity=0.223 Sum_probs=30.7
Q ss_pred cCCCEEEEcCCccCCC-CCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 8 LEIDFVISTGDNFYED-GLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~-G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
.+|+.||.+||.|-.. +............+..........++++.++||||...
T Consensus 29 ~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD~~~ 83 (217)
T cd07398 29 GEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHDFLL 83 (217)
T ss_pred CCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCchHHH
Confidence 5899999999988421 11111111111111222211235689999999999853
No 51
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=97.12 E-value=0.00043 Score=48.02 Aligned_cols=37 Identities=41% Similarity=0.546 Sum_probs=22.0
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.+||+|+.+||.+-+ .++.+ .+. .+ |+++++||||..
T Consensus 24 ~~~d~vi~~GDi~~~--------~~~~~----~~~--~~--~~~~v~GNHD~~ 60 (156)
T PF12850_consen 24 NEPDFVIILGDIFDP--------EEVLE----LLR--DI--PVYVVRGNHDNW 60 (156)
T ss_dssp TTESEEEEES-SCSH--------HHHHH----HHH--HH--EEEEE--CCHST
T ss_pred cCCCEEEECCCchhH--------HHHHH----HHh--cC--CEEEEeCCcccc
Confidence 579999999996531 22222 221 12 999999999963
No 52
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.09 E-value=0.0011 Score=50.25 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=31.4
Q ss_pred cCCCEEEEcCCccCCCCCCCCCC--------hHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDD--------PAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d--------~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
.+++.||.+||.+-..+.....+ .+....+.+.+..-.-.+|++.++||||....
T Consensus 34 ~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~v~~ipGNHD~~~~ 96 (243)
T cd07386 34 SRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSHIKIIIIPGNHDAVRQ 96 (243)
T ss_pred cCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccCCeEEEeCCCCCcccc
Confidence 36799999999874322100000 11112233444311124899999999998643
No 53
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=96.99 E-value=0.0015 Score=46.17 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=26.8
Q ss_pred hhc-CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 6 EKL-EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 6 ~~~-~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.. +||.|+.+||.+ +... ++.+. .+..|++.|+||||..
T Consensus 24 ~~~~~~d~ii~~GD~~---------~~~~---~~~l~---~~~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 24 NLESNVDLVIHAGDLT---------SPFV---LKEFE---DLAAKVIAVRGNNDGE 64 (158)
T ss_pred hhccCCCEEEEcCCCC---------CHHH---HHHHH---HhCCceEEEccCCCch
Confidence 344 899999999965 1222 22111 2456899999999974
No 54
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=96.98 E-value=0.00031 Score=58.72 Aligned_cols=22 Identities=45% Similarity=0.848 Sum_probs=17.2
Q ss_pred hhcCCCCCCCceEEeCCCcccC
Q 040839 39 SIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 39 ~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.++..+-|++|||.|+||||.-
T Consensus 175 ~p~~a~Gl~~Pwy~v~GNHD~~ 196 (496)
T TIGR03767 175 APVTSPGLDLPWYSVFGNHDDL 196 (496)
T ss_pred CcccccCcCCceeeeccCCccc
Confidence 4444456789999999999974
No 55
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.84 E-value=0.0011 Score=47.58 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=28.1
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
.++|.|+.+||.+... . .+.. .+.+ ..++.|++.|+||||...
T Consensus 41 ~~~d~vi~~GDl~~~~-~----~~~~----~~~l--~~~~~~~~~v~GNHD~~~ 83 (168)
T cd07390 41 GPDDTVYHLGDFSFGG-K----AGTE----LELL--SRLNGRKHLIKGNHDSSL 83 (168)
T ss_pred CCCCEEEEeCCCCCCC-C----hHHH----HHHH--HhCCCCeEEEeCCCCchh
Confidence 3689999999976432 2 1121 1222 135679999999999764
No 56
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=96.78 E-value=0.0016 Score=45.65 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=25.4
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
+|.|+.+||.... +... . .....|++.|+||||...
T Consensus 25 ~d~ii~~GD~~~~-~~~~----~-----------~~~~~~~~~V~GNhD~~~ 60 (155)
T cd00841 25 VDLIIHAGDVLYP-GPLN----E-----------LELKAPVIAVRGNCDGEV 60 (155)
T ss_pred CCEEEECCccccc-cccc----h-----------hhcCCcEEEEeCCCCCcC
Confidence 9999999996642 2211 1 123579999999999864
No 57
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=96.64 E-value=0.002 Score=49.34 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=27.0
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHH-------------------------HHHHhhcCCCCCCCceEEeCCCcc
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFL-------------------------DSFTSIYTAPSLQKQWYNVLGNHD 58 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~-------------------------~~~~~~~~~~~l~~p~~~vlGNHD 58 (131)
++++.+||.||++||..-.. . ....|. ..|.+.+ ..+++|++.+|||||
T Consensus 27 ~~~e~~~D~~v~~G~~~~~~-a---~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L--~~~~~p~~~vPG~~D 100 (255)
T PF14582_consen 27 VIPEKGPDAVVFVGDLLKAE-A---RSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL--GELGVPVFVVPGNMD 100 (255)
T ss_dssp HHHHHT-SEEEEES-SS-TC-H---HHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH--HCC-SEEEEE--TTS
T ss_pred hccccCCCEEEEeccccccc-h---hhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH--HhcCCcEEEecCCCC
Confidence 45677999999999975221 1 112232 0122232 357899999999999
Q ss_pred cC
Q 040839 59 YR 60 (131)
Q Consensus 59 ~~ 60 (131)
-.
T Consensus 101 ap 102 (255)
T PF14582_consen 101 AP 102 (255)
T ss_dssp -S
T ss_pred ch
Confidence 84
No 58
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.34 E-value=0.0078 Score=41.51 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=24.9
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
+.++|.++++||.. . .. ...+.+. ...|++.|+||||.
T Consensus 20 ~~~~d~ii~~GD~~--------~-~~-~~~~~~~-----~~~~~~~V~GN~D~ 57 (129)
T cd07403 20 LEGVDLILSAGDLP--------K-EY-LEYLVTM-----LNVPVYYVHGNHDV 57 (129)
T ss_pred CCCCCEEEECCCCC--------h-HH-HHHHHHH-----cCCCEEEEeCCCcc
Confidence 47799999999941 1 11 1112221 24689999999994
No 59
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=96.32 E-value=0.0039 Score=46.55 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=29.4
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC-CCCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT-APSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~-~~~l~~p~~~vlGNHD~~ 60 (131)
.+.|.+|++||.+ +.|..+ .+....+.+... ....+.+++.++||||..
T Consensus 31 ~~~d~lv~lGD~v-drG~~~---~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 31 GGSTHLVQLGDIF-DRGPDV---IEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CCCcEEEEECCCc-CCCcCH---HHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4689999999987 344322 122222222211 112357899999999975
No 60
>PHA02239 putative protein phosphatase
Probab=96.25 E-value=0.0045 Score=47.22 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=27.6
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.|.+|++||.+ +.|..+ . +.++.+.....-..++++++||||..
T Consensus 29 ~~d~li~lGD~i-DrG~~s---~---~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 29 PEETIVFLGDYV-DRGKRS---K---DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CCCEEEEecCcC-CCCCCh---H---HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 369999999987 445432 1 22333322111235799999999963
No 61
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=96.17 E-value=0.0024 Score=52.74 Aligned_cols=59 Identities=29% Similarity=0.568 Sum_probs=24.8
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCCC------------------CCCh-HHHHHHHhhcCCCCC-----CCceEEeCCCcc
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLTG------------------EDDP-AFLDSFTSIYTAPSL-----QKQWYNVLGNHD 58 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~~------------------~~d~-~~~~~~~~~~~~~~l-----~~p~~~vlGNHD 58 (131)
.++++.+|||+|++||+||.++... .... .+...+.+....+.+ ++|++++.=.||
T Consensus 126 ~~a~~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHd 205 (453)
T PF09423_consen 126 RIAERDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHD 205 (453)
T ss_dssp HHTT-S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STT
T ss_pred hhhccCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCce
Confidence 4555578999999999999986300 0111 111122222222222 489999999999
Q ss_pred cCC
Q 040839 59 YRG 61 (131)
Q Consensus 59 ~~~ 61 (131)
+..
T Consensus 206 i~n 208 (453)
T PF09423_consen 206 IGN 208 (453)
T ss_dssp TST
T ss_pred ecc
Confidence 863
No 62
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=96.15 E-value=0.0084 Score=43.70 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=26.1
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.++|.|+.+||.+. +.....++ .+..|+++|.||||+.
T Consensus 27 ~~~~d~iih~GDi~~---------~~~~~~l~------~~~~~~~~V~GN~D~~ 65 (178)
T cd07394 27 PGKIQHVLCTGNLCS---------KETYDYLK------TIAPDVHIVRGDFDEN 65 (178)
T ss_pred cCCCCEEEECCCCCC---------HHHHHHHH------hhCCceEEEECCCCcc
Confidence 356999999999753 11111121 2345899999999975
No 63
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.13 E-value=0.0074 Score=50.86 Aligned_cols=56 Identities=14% Similarity=0.111 Sum_probs=32.9
Q ss_pred hcCCCEEEEcCCccCCCCCCCCC-----ChHHH---HHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 7 KLEIDFVISTGDNFYEDGLTGED-----DPAFL---DSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~-----d~~~~---~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
..+++.+|.+||.+-..|..... .+... ..+.+.+..-.-.+|++.+|||||....
T Consensus 282 ~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~ 345 (504)
T PRK04036 282 ASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAEYLKQIPEDIKIIISPGNHDAVRQ 345 (504)
T ss_pred hhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHHHHHhhhcCCeEEEecCCCcchhh
Confidence 56799999999998544432111 11111 1233333211124899999999998643
No 64
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=95.80 E-value=0.0062 Score=47.14 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=28.6
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.|.++++||.+ ..|..+ .+.++.+.. ++..+..|+||||..
T Consensus 26 ~~D~Li~lGDlV-dRGp~s------~evl~~l~~---l~~~v~~VlGNHD~~ 67 (257)
T cd07422 26 AKDRLWLVGDLV-NRGPDS------LETLRFVKS---LGDSAKTVLGNHDLH 67 (257)
T ss_pred CCCEEEEecCcC-CCCcCH------HHHHHHHHh---cCCCeEEEcCCchHH
Confidence 579999999987 445432 133444432 445788999999974
No 65
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=95.69 E-value=0.0084 Score=51.09 Aligned_cols=56 Identities=29% Similarity=0.479 Sum_probs=31.9
Q ss_pred hhhhcC-CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcC--CCCC-CCceEEeCCCcccC
Q 040839 4 IGEKLE-IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYT--APSL-QKQWYNVLGNHDYR 60 (131)
Q Consensus 4 ~~~~~~-~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~--~~~l-~~p~~~vlGNHD~~ 60 (131)
+.+..+ +|+|+.+||+.-+. +-......-.....+++. .+.+ ++|+|.++||||-.
T Consensus 204 ike~~~~iD~I~wTGD~~~H~-~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~ 263 (577)
T KOG3770|consen 204 IKENHKDIDYIIWTGDNVAHD-VWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIH 263 (577)
T ss_pred HHhcCCCCCEEEEeCCCCccc-chhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCC
Confidence 344455 99999999988554 211111111111222221 0233 59999999999985
No 66
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=95.64 E-value=0.013 Score=45.80 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=29.1
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.+.|.++++||.+ ..|..+ .+.++.+. .++.++++|+||||..
T Consensus 27 ~~~D~li~lGDlV-drGp~s------~~vl~~l~---~l~~~~~~VlGNHD~~ 69 (275)
T PRK00166 27 PAKDTLWLVGDLV-NRGPDS------LEVLRFVK---SLGDSAVTVLGNHDLH 69 (275)
T ss_pred CCCCEEEEeCCcc-CCCcCH------HHHHHHHH---hcCCCeEEEecChhHH
Confidence 3579999999987 345432 13344443 2456799999999983
No 67
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=95.59 E-value=0.026 Score=43.79 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=30.5
Q ss_pred cCCCEEEEcCCccCCCCCCCCCCh------H---HHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDP------A---FLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~------~---~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
.++|+||..||-.- ..+.+|. + -...|.+.+.. ...++|++.|.||||-.
T Consensus 27 ~~~D~lI~~GDf~~---~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~ 86 (262)
T cd00844 27 TKVDLLICCGDFQA---VRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEAS 86 (262)
T ss_pred CCCcEEEEcCCCCC---cCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCH
Confidence 46999999999532 2222221 1 11225455543 23578899999999953
No 68
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.47 E-value=0.017 Score=42.74 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=28.9
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.+++.+|++||.+ +.|..+ .+.++.+........+++++.||||..
T Consensus 23 ~~~d~li~lGD~v-drg~~~------~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 23 PPNDKLIFLGDYV-DRGPDS------VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred CCCCEEEEECCEe-CCCCCc------HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 4689999999977 344322 233332222111156899999999985
No 69
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=95.25 E-value=0.019 Score=43.20 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=27.4
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.+.+|++||.+ +.|..+. +.++.+.... -+-.++.+.||||..
T Consensus 33 ~~d~lvflGD~I-DRGp~S~------~vl~~l~~l~-~~~~~~~l~GNHE~~ 76 (222)
T cd07413 33 PERQVVFLGDLI-DRGPEIR------ELLEIVKSMV-DAGHALAVMGNHEFN 76 (222)
T ss_pred CCCEEEEeCccc-CCCCCHH------HHHHHHHHhh-cCCCEEEEEccCcHH
Confidence 467999999987 5555431 2333333211 123688999999974
No 70
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.07 E-value=0.015 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.4
Q ss_pred hhhhhcCCCEEEEcCCccCCCCCC
Q 040839 3 LIGEKLEIDFVISTGDNFYEDGLT 26 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~~G~~ 26 (131)
.+|+++++|+|+.-||.|+.+-++
T Consensus 46 ~iA~e~~VDmiLlGGDLFHeNkPS 69 (646)
T KOG2310|consen 46 EIAQENDVDMILLGGDLFHENKPS 69 (646)
T ss_pred HHHHhcCCcEEEecCcccccCCcc
Confidence 578899999999999999876443
No 71
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=94.44 E-value=0.047 Score=40.37 Aligned_cols=41 Identities=27% Similarity=0.299 Sum_probs=26.8
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.++|.++++||.+. .|..+ .+.++.+.. .+++++.||||..
T Consensus 27 ~~~d~~~~~GD~v~-~g~~~------~~~~~~l~~-----~~~~~v~GNhe~~ 67 (207)
T cd07424 27 PARDRLISVGDLID-RGPES------LACLELLLE-----PWFHAVRGNHEQM 67 (207)
T ss_pred CCCCEEEEeCCccc-CCCCH------HHHHHHHhc-----CCEEEeECCChHH
Confidence 35899999999873 34321 233433321 3689999999965
No 72
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=94.22 E-value=0.044 Score=41.83 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=26.7
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
.|.+|++||.+ +.|..+. +.++.+... .....++++.||||.
T Consensus 37 ~d~li~lGDli-DRGp~S~------~vl~~~~~~-~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 37 QRKLAFVGDLT-DRGPHSL------RMIEIVWEL-VEKKAAYYVPGNHCN 78 (245)
T ss_pred CCEEEEECccc-CCCcChH------HHHHHHHHH-hhCCCEEEEeCccHH
Confidence 47899999988 5565432 233323221 123579999999985
No 73
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=93.88 E-value=0.051 Score=41.03 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=26.5
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
+.|.+|++||.+ +.|..+ .+.++.+... ..+..++.+.||||.
T Consensus 37 ~~d~lv~lGDlI-DrG~~s------~evl~~l~~l-~~~~~~~~v~GNHE~ 79 (234)
T cd07423 37 EGRRAVFVGDLV-DRGPDS------PEVLRLVMSM-VAAGAALCVPGNHDN 79 (234)
T ss_pred CCCEEEEECCcc-CCCCCH------HHHHHHHHHH-hhCCcEEEEECCcHH
Confidence 368999999988 345432 1333333211 012358899999997
No 74
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=93.83 E-value=0.039 Score=43.32 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
+.|-++++||.+ ..|..+. +.++.+. +++..+..|+||||.
T Consensus 28 ~~D~l~~lGDlV-dRGP~sl------evL~~l~---~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 28 GQDTLWLTGDLV-ARGPGSL------EVLRYVK---SLGDAVRLVLGNHDL 68 (279)
T ss_pred CCCEEEEeCCcc-CCCCCHH------HHHHHHH---hcCCCeEEEEChhHH
Confidence 468999999987 4455321 2233332 233456789999997
No 75
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=93.73 E-value=0.048 Score=40.80 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
+.|-++++||.+ +.|..+ . +.++.+.. ..++.++||||.
T Consensus 44 ~~D~li~lGDlv-DrGp~s----~--~vl~~l~~-----~~~~~v~GNHE~ 82 (218)
T PRK11439 44 WRDLLISVGDLI-DRGPQS----L--RCLQLLEE-----HWVRAVRGNHEQ 82 (218)
T ss_pred ccCEEEEcCccc-CCCcCH----H--HHHHHHHc-----CCceEeeCchHH
Confidence 578999999988 445432 1 23333321 235789999995
No 76
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=0.074 Score=40.78 Aligned_cols=50 Identities=26% Similarity=0.466 Sum_probs=29.6
Q ss_pred CCCEEEEcCCccCCCCCCCCC-ChHHHHHHH-hhcCCCCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGED-DPAFLDSFT-SIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~-d~~~~~~~~-~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.|.+..+||.|- |-...+ -++..+... .+.....-..|+|.++||||..
T Consensus 29 ~ad~lyilGDifd--~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 29 QADALYILGDIFD--GWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred cCcEEEEechhhh--hhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 3489999999873 222222 223333322 2221113358999999999974
No 77
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=93.35 E-value=0.13 Score=39.44 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=26.7
Q ss_pred cCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 8 LEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 8 ~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
..++ ++|..||.+-..........+ . ..+.+. .++. -++++||||+..+
T Consensus 36 ~~~~~l~l~~GD~~~g~~~~~~~~g~--~-~~~~l~--~l~~-d~~~~GNHefd~g 85 (257)
T cd07406 36 ENPNTLVLFSGDVLSPSLLSTATKGK--Q-MVPVLN--ALGV-DLACFGNHEFDFG 85 (257)
T ss_pred cCCCEEEEECCCccCCccchhhcCCc--c-HHHHHH--hcCC-cEEeecccccccC
Confidence 3466 899999988544332211111 1 112221 2333 3678999999643
No 78
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=92.89 E-value=0.17 Score=38.53 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=32.2
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHH--HhhcCCCCCCCceEEeCCCcccCC
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSF--TSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~--~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
.++..++|++|..||..|-. ..++.-.... .... ....+|++++|||-|-..
T Consensus 25 ~~~~~~~D~lviaGDlt~~~----~~~~~~~~~~~~~e~l--~~~~~~v~avpGNcD~~~ 78 (226)
T COG2129 25 AAADIRADLLVIAGDLTYFH----FGPKEVAEELNKLEAL--KELGIPVLAVPGNCDPPE 78 (226)
T ss_pred HHhhccCCEEEEecceehhh----cCchHHHHhhhHHHHH--HhcCCeEEEEcCCCChHH
Confidence 45566899999999987311 1222221111 1111 246799999999999764
No 79
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=92.82 E-value=0.1 Score=41.40 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=25.1
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCC--CCceEEeCCCcccC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSL--QKQWYNVLGNHDYR 60 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l--~~p~~~vlGNHD~~ 60 (131)
.+.+|++||.+ +.|..+. ..++.+...... ...+..+.||||..
T Consensus 35 ~~~iVfLGDyV-DRGPdS~------eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 35 SALVIFLGDYC-DRGPETR------KVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred CcEEEEeCCcC-CCCCCHH------HHHHHHHHhhhcccccceEEEecCChHH
Confidence 56899999977 4554321 223222211111 12578899999954
No 80
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=92.81 E-value=0.11 Score=38.74 Aligned_cols=45 Identities=31% Similarity=0.433 Sum_probs=28.9
Q ss_pred CCCEEEEcCCccCCCCCCCC-CChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 9 EIDFVISTGDNFYEDGLTGE-DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~-~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
+=|.|+..||.=..--++.. .|-+|- ..|+..=|++-|||||+..
T Consensus 43 ~eDiVllpGDiSWaM~l~ea~~Dl~~i---------~~LPG~K~m~rGNHDYWw~ 88 (230)
T COG1768 43 PEDIVLLPGDISWAMRLEEAEEDLRFI---------GDLPGTKYMIRGNHDYWWS 88 (230)
T ss_pred hhhEEEecccchhheechhhhhhhhhh---------hcCCCcEEEEecCCccccc
Confidence 34788999996543323211 122221 3578889999999999865
No 81
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=92.49 E-value=0.07 Score=41.10 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=26.6
Q ss_pred cCCCEEEE-cCCccCCCCCCCCCC---h-HHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 8 LEIDFVIS-TGDNFYEDGLTGEDD---P-AFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 8 ~~~d~vv~-~GDn~Y~~G~~~~~d---~-~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
..|+.++. .||.|..+..++... . +... .-+.+. .++. -++++||||+..+
T Consensus 42 ~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~-~~~~ln--~~g~-d~~~lGNHe~d~g 97 (277)
T cd07410 42 ENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHP-MIAAMN--ALGY-DAGTLGNHEFNYG 97 (277)
T ss_pred cCCCeEEEeCCccCCccHHHHHhhhcccCCCCh-HHHHHH--hcCC-CEEeecccCcccC
Confidence 45777665 999986554322110 0 0001 112221 2333 4778899999754
No 82
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=92.37 E-value=0.22 Score=37.51 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=27.1
Q ss_pred cCCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 8 LEID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 8 ~~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
..|+ ++|.+||.+.+....... .... ..+.+. .+ ..-++++||||+..+
T Consensus 35 ~~~~~l~v~~GD~~~~~~~~~~~--~~~~-~~~~l~--~~-g~d~~~~GNHe~d~g 84 (252)
T cd00845 35 ENENTLLLDAGDNFDGSPPSTAT--KGEA-NIELMN--AL-GYDAVTIGNHEFDYG 84 (252)
T ss_pred cCCCeEEEeCCccCCCccchhcc--CCcH-HHHHHH--hc-CCCEEeecccccccc
Confidence 3467 779999998655443211 1111 112221 22 345678999999753
No 83
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=91.80 E-value=0.23 Score=36.20 Aligned_cols=41 Identities=27% Similarity=0.234 Sum_probs=28.2
Q ss_pred hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
...++|+||.+||...+. .... ++. .+..++++|-||.|..
T Consensus 25 ~~~~~d~vih~GD~~~~~-----~~~~----l~~-----~~~~~i~~V~GN~D~~ 65 (172)
T COG0622 25 NLEKVDAVIHAGDSTSPF-----TLDA----LEG-----GLAAKLIAVRGNCDGE 65 (172)
T ss_pred hhcCCCEEEECCCcCCcc-----chHH----hhc-----ccccceEEEEccCCCc
Confidence 346899999999976422 1112 111 1568999999999986
No 84
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=90.90 E-value=0.24 Score=36.03 Aligned_cols=42 Identities=26% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
=|.+.++||..- ..++.+ ....+. +.|+....+|+||||-.+
T Consensus 46 ~D~lwhLGDl~~-----~~n~~~---~a~~Il--erLnGrkhlv~GNhDk~~ 87 (186)
T COG4186 46 DDVLWHLGDLSS-----GANRER---AAGLIL--ERLNGRKHLVPGNHDKCH 87 (186)
T ss_pred cceEEEeccccc-----ccchhh---HHHHHH--HHcCCcEEEeeCCCCCCc
Confidence 467889999542 223322 233443 357788899999999865
No 85
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=90.76 E-value=0.41 Score=34.13 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=29.9
Q ss_pred hhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcc
Q 040839 6 EKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHD 58 (131)
Q Consensus 6 ~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD 58 (131)
++.++|++|.+||-|-.. . .+ ..|...+.. ....+|.|.+-|||.
T Consensus 23 k~gpFd~~ic~Gdff~~~---~-~~----~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 23 KKGPFDALLCVGDFFGDD---E-DD----EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred ccCCeeEEEEecCccCCc---c-ch----hhHHHHhcCCccCCCCEEEECCCCC
Confidence 345799999999966211 1 11 235445533 356799999999995
No 86
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=90.38 E-value=0.3 Score=36.64 Aligned_cols=40 Identities=33% Similarity=0.484 Sum_probs=25.5
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCccc
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDY 59 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~ 59 (131)
.+.|.++++||.+. .|..+ .+.++.+.. -.++.+.||||.
T Consensus 41 ~~~d~l~~lGD~vd-rG~~~------~~~l~~l~~-----~~~~~v~GNHE~ 80 (218)
T PRK09968 41 PETDLLISVGDNID-RGPES------LNVLRLLNQ-----PWFISVKGNHEA 80 (218)
T ss_pred CCCCEEEECCCCcC-CCcCH------HHHHHHHhh-----CCcEEEECchHH
Confidence 36799999999873 44432 123332221 246789999997
No 87
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=90.22 E-value=0.27 Score=37.54 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=27.0
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
++.+++..||+|-.......... .. .-+.+. .+..-+ +++||||+..+
T Consensus 37 ~~~l~l~~GD~~~gs~~~~~~~g--~~-~~~~ln--~~g~d~-~~~GNHefd~G 84 (257)
T cd07408 37 DNDLLVDAGDAIQGLPISDLDKG--ET-IIKIMN--AVGYDA-VTPGNHEFDYG 84 (257)
T ss_pred CCEEEEeCCCcCCCchhhhhcCC--cH-HHHHHH--hcCCcE-EccccccccCC
Confidence 57899999999854433221111 11 112221 344455 57899999754
No 88
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=90.22 E-value=0.19 Score=42.23 Aligned_cols=22 Identities=50% Similarity=0.587 Sum_probs=19.2
Q ss_pred hhhcCCCEEEEcCCccCCCCCC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLT 26 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~ 26 (131)
..+++|||||++||.||..|..
T Consensus 164 ma~~~~D~viH~GDyIYeyg~~ 185 (522)
T COG3540 164 MAKEEPDFVIHLGDYIYEYGPI 185 (522)
T ss_pred HHhcCCCEEEEcCCeeeccCCc
Confidence 4567799999999999998875
No 89
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=88.67 E-value=0.26 Score=37.83 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=25.5
Q ss_pred CCCEE-EEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 9 EIDFV-ISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 9 ~~d~v-v~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
.++.+ +..||.+..++.+... +... .-+.+. . +++.++.||||+..+
T Consensus 50 ~~~~l~l~~GD~~~gs~~~~~~--~g~~-~~~~l~--~--~g~da~~GNHefd~g 97 (264)
T cd07411 50 NPNTLLLDGGDTWQGSGEALYT--RGQA-MVDALN--A--LGVDAMVGHWEFTYG 97 (264)
T ss_pred CCCeEEEeCCCccCCChHHhhc--CChh-HHHHHH--h--hCCeEEecccccccC
Confidence 68876 6799998655432111 1111 112221 1 555555599999854
No 90
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=85.61 E-value=1 Score=35.07 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=28.3
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
.+.+.+|++||-+ +.|..+ .+.+..++.. ...+-.++.+.||||..
T Consensus 53 ~~~~~~vfLGD~V-DrG~~s------~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 53 PPDTNYVFLGDYV-DRGPFS------IEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCCceEEEeCCcc-CCCCCh------HHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 3467899999976 555533 2333333211 12235689999999985
No 91
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=85.40 E-value=2 Score=33.26 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=28.2
Q ss_pred hhhcCCCEEEEcCCccCCC-CCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 5 GEKLEIDFVISTGDNFYED-GLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~-G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
-++.++||+|..|||+-.. |++ +.. .+.+. .+.+- .+++|||+|..+
T Consensus 25 k~~~~~D~vi~NgEn~~gg~gl~----~~~---~~~L~---~~G~D-~iTlGNH~fD~g 72 (255)
T cd07382 25 KKEYKIDFVIANGENAAGGKGIT----PKI---AKELL---SAGVD-VITMGNHTWDKK 72 (255)
T ss_pred HHHCCCCEEEECCccccCCCCCC----HHH---HHHHH---hcCCC-EEEecccccCcc
Confidence 3466899999999998542 332 222 22222 23333 556799999754
No 92
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=84.20 E-value=1.2 Score=35.71 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=26.0
Q ss_pred CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCC-CCCCceEEeCCCcccC
Q 040839 11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAP-SLQKQWYNVLGNHDYR 60 (131)
Q Consensus 11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~-~l~~p~~~vlGNHD~~ 60 (131)
+..|++||-+ +.|..+. +.+.-++... ..+-.++++.|||+..
T Consensus 80 ~~~lFLGDyV-DRG~~s~------Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 80 NPYVFNGDFV-DRGKRSI------EILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred ceEEEecccc-CCCCCcH------HHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 5799999976 4554432 2233333211 1234699999999885
No 93
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=83.36 E-value=1.2 Score=36.44 Aligned_cols=43 Identities=28% Similarity=0.492 Sum_probs=26.4
Q ss_pred CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
+.+|++||.+ +.|..+ .+.+..++.. -...--++++.||||..
T Consensus 95 ~~ylFLGDyV-DRGp~S------lEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 95 RFYVFNGDYV-DRGAWG------LETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred ceEEEecccc-CCCCCh------HHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 3599999966 566543 2333333221 12345689999999985
No 94
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=83.15 E-value=0.49 Score=34.72 Aligned_cols=62 Identities=19% Similarity=0.063 Sum_probs=31.3
Q ss_pred hcCCCEEEEcCCccCCCCCCC---------CCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC-chhhcC
Q 040839 7 KLEIDFVISTGDNFYEDGLTG---------EDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD-VEAQLS 68 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~---------~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~-~~aq~~ 68 (131)
+.+|+.+|++|+-+-...... .....+...+...+..-.-.+++..+||+||-... +..|..
T Consensus 29 ~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvlvPg~~D~~~~~~lPq~p 100 (209)
T PF04042_consen 29 ASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQVVLVPGPNDPTSSPVLPQPP 100 (209)
T ss_dssp CTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSEEEEE--TTCTT-S-SCSB--
T ss_pred cCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccEEEEeCCCccccccCCCCCCC
Confidence 678999999999664322110 00111222222333211125899999999999876 555543
No 95
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=83.00 E-value=2.1 Score=33.21 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=50.2
Q ss_pred cCCCEEEEcCCccCCCCCCCC--------------CChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhcCcc--c
Q 040839 8 LEIDFVISTGDNFYEDGLTGE--------------DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQLSPV--L 71 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~--------------~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~~~~--~ 71 (131)
.+..-+|..||.+-..+.... ....-.+.++..+..-.-.+|+..+|||||-......|.... +
T Consensus 41 s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~l 120 (257)
T cd07387 41 SSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCL 120 (257)
T ss_pred cceEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHH
Confidence 345679999999865543211 001112223333331122599999999999987666666421 1
Q ss_pred cccC---CCCcc-cceEEecCCeEEEEEEeCCcCcc
Q 040839 72 TRKD---SRWLC-SRSFILDAEIAEFVFVDTTPFVD 103 (131)
Q Consensus 72 ~~~~---~~w~~-p~~~~~~~~~v~~~~lDT~~~~~ 103 (131)
-... ....+ ..-|.++-+.++|+.-.-+...+
T Consensus 121 fp~s~~~~~~~~vtNP~~~~i~g~~vLgtsGqni~D 156 (257)
T cd07387 121 FPKSSNYSTLNLVTNPYEFSIDGVRVLGTSGQNVDD 156 (257)
T ss_pred hhcccccCCcEEeCCCeEEEECCEEEEEECCCCHHH
Confidence 0111 11111 11233444568887777666433
No 96
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=82.93 E-value=2.3 Score=32.95 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 9 EID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 9 ~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
.++ +++..||.+..+...+....+ . .-+++. .++.- .+++||||+..+
T Consensus 48 ~~~~l~ld~GD~~~gs~~~~~~~g~--~-~~~~ln--~~g~D-~~~lGNHefd~G 96 (281)
T cd07409 48 NPNVLFLNAGDAFQGTLWYTLYKGN--A-DAEFMN--LLGYD-AMTLGNHEFDDG 96 (281)
T ss_pred CCCEEEEeCCCCCCCcchhhhcCCh--H-HHHHHH--hcCCC-EEEeccccccCC
Confidence 455 566699998765443321111 1 112222 34444 556899999754
No 97
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=82.79 E-value=1.5 Score=34.68 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=26.7
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
.+-+|++||-+ +.|..+ .+.+..++.. -...--++++.||||..
T Consensus 70 ~~~ylFLGDyV-DRG~~s------~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 70 NTRYLFLGDYV-DRGYFS------IECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CceEEEECCcc-CCCCCh------HHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 47799999966 455432 2333333321 11234689999999974
No 98
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=82.41 E-value=1.2 Score=35.24 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=25.9
Q ss_pred EEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 12 FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 12 ~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
-+|++||-+ +.|..+ .+.+..++.. ...+-.++.+.||||..
T Consensus 85 ~~vfLGDyV-DRGp~s------~evl~ll~~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 85 DYLFLGDYV-DRGSNS------LETICLLLALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred eEEEECCcc-CCCCCh------HHHHHHHHHhhhcCCCcEEEeccccchH
Confidence 488999966 555432 2334433321 12345799999999974
No 99
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=82.08 E-value=0.99 Score=35.15 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
..++|..||+|..++..+... +-.... +++. .+++- ++++||||+..+
T Consensus 43 ~~l~ld~GD~~~gs~~~s~~~-~g~~~~-~~~n--~~g~D-a~t~GNHefd~G 90 (288)
T cd07412 43 NSLFVSAGDLIGASPFESALL-QDEPTI-EALN--AMGVD-ASAVGNHEFDEG 90 (288)
T ss_pred CeEEEeCCcccccccchhhcc-cCCcHH-HHHH--hhCCe-eeeecccccccC
Confidence 358999999996554421100 000111 2221 23333 478899998743
No 100
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=79.71 E-value=1.6 Score=34.30 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
+.+.+|++||-+ +.|..+ .+.+..++.. ...+..++.+.||||..
T Consensus 68 ~~~~~lfLGDyV-DRG~~s------~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 68 PDTNYLFLGDYV-DRGYYS------VETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CCCeEEEEeEEC-CCCcCH------HHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 345799999965 455432 2333333221 12345799999999974
No 101
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=79.51 E-value=4.1 Score=34.38 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCCEEEEcCCccCCCCCCCCC--------ChHHHHHHHhhcCCCCCCCceEEeCCCcccCCCchhhc
Q 040839 9 EIDFVISTGDNFYEDGLTGED--------DPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGDVEAQL 67 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~--------d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~~~aq~ 67 (131)
+...++..||.+-.-|+-..+ -..-++.+...+....-.+.+++.|||||..-....|-
T Consensus 262 ~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~a~PQp 328 (481)
T COG1311 262 RVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPEHIKVFIMPGNHDAVRQALPQP 328 (481)
T ss_pred ceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhCCCCceEEEecCCCCccccccCCC
Confidence 456789999988555553221 11122223333332223589999999999976555554
No 102
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=79.42 E-value=2 Score=33.81 Aligned_cols=45 Identities=13% Similarity=0.243 Sum_probs=26.5
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
+.+-+|++||-+ +.|..+. +.+..++.. -..+-.++.+.||||..
T Consensus 76 ~~~~~lfLGDyV-DRG~~s~------e~i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 76 PESNYLFLGDYV-DRGKQSL------ETICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred CcceEEEEeeEe-cCCCCcH------HHHHHHHHhhhhCCCcEEEEecccchh
Confidence 345789999966 5565432 223222211 11233589999999985
No 103
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=78.99 E-value=3.6 Score=32.10 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
-++.++||+|..|+|.- .|.. -.+.. .+.+. ...+-+..+ |||.|...
T Consensus 26 k~~~~~D~vIaNgEn~~-gG~G--i~~~~---~~~L~---~~GvDviT~-GNH~~Dkg 73 (266)
T TIGR00282 26 KSKYQADLVIANGENTT-HGKG--LTLKI---YEFLK---QSGVNYITM-GNHTWFQK 73 (266)
T ss_pred HHhCCCCEEEEcCcccC-CCCC--CCHHH---HHHHH---hcCCCEEEc-cchhccCc
Confidence 34668999999999983 3321 12222 22332 244555554 99999743
No 104
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=78.45 E-value=1.6 Score=37.97 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=32.9
Q ss_pred hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
+.+.+..-+|-+-.+|| ||+.|..+. ...+.+...+++++-| ||||..
T Consensus 177 ~~lIqrL~VDhLHIvGD-IyDRGp~pd------~ImD~Lm~~hsvDIQW----GNHDIl 224 (640)
T PF06874_consen 177 SELIQRLAVDHLHIVGD-IYDRGPRPD------KIMDRLMNYHSVDIQW----GNHDIL 224 (640)
T ss_pred HHHHHHHhhhheeeccc-ccCCCCChh------HHHHHHhcCCCccccc----cchHHH
Confidence 34455667888899999 678888541 2344444456777777 999974
No 105
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=77.05 E-value=2.3 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=25.9
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
.+-++++||-+ +.|..+ .+.+..++.. -..+-.++.+.||||..
T Consensus 79 ~~~~lfLGDyV-DRG~~s------~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 79 YSNYLFLGDYV-DRGKHS------VETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred cccEEEeeeEe-cCCCCH------HHHHHHHHHHhhccCCeEEEEecccchH
Confidence 34688999966 455432 2333333211 12345799999999964
No 106
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=76.71 E-value=2.5 Score=33.84 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 10 IDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
.+-.|++||-+ +.|..+ .+.+..++.. -...-.++++.||||..
T Consensus 86 ~~~ylfLGDyV-DRG~~s------~evl~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 86 ESNYLFLGDYV-DRGKQS------LETICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred cceEEEeceec-CCCCCc------HHHHHHHHHhcccCCCceEEEecccchh
Confidence 45688999966 455432 2333333321 12234689999999974
No 107
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=76.13 E-value=2.2 Score=34.06 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=26.0
Q ss_pred CEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCC-CCCCceEEeCCCcccC
Q 040839 11 DFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAP-SLQKQWYNVLGNHDYR 60 (131)
Q Consensus 11 d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~-~l~~p~~~vlGNHD~~ 60 (131)
+-+|++||-+ +.|..+ .+.+..++... ...--++.+.|||+..
T Consensus 89 ~~ylFLGDyV-DRG~~S------~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 89 NPYLFNGDFV-DRGSFS------VEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred CeEEEEeeEe-cCCCCh------HHHHHHHHHhhhccCCceEEEeeccchH
Confidence 4799999966 555433 23343333211 1234689999999974
No 108
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=75.40 E-value=3.9 Score=34.89 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=26.8
Q ss_pred cCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 8 LEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
.+..++|..||+|.++-......-+ ... +++. .+ .-=++++||||+..+
T Consensus 48 ~~n~l~ldaGD~~~gs~~~~~~~g~--~~i-~~~N--~~-g~Da~~lGNHEFd~G 96 (550)
T TIGR01530 48 SKNALVLHAGDAIIGTLYFTLFGGR--ADA-ALMN--AA-GFDFFTLGNHEFDAG 96 (550)
T ss_pred CCCeEEEECCCCCCCccchhhcCCH--HHH-HHHh--cc-CCCEEEeccccccCC
Confidence 3456899999998655333211101 111 2221 12 334678999999754
No 109
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=74.10 E-value=4.5 Score=30.77 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=29.5
Q ss_pred EEEEcCCccCCCCCCCC---CChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 12 FVISTGDNFYEDGLTGE---DDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 12 ~vv~~GDn~Y~~G~~~~---~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
-++++||.++..|.... +-.++.++++.+. .++.-..++|| |++..
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~---~l~~~~~i~pG-H~~~~ 168 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLA---ALPDDTLVYCA-HEYTL 168 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHH---cCCCCeEEECC-CCchH
Confidence 37999999998775432 2335555565443 35555667888 98753
No 110
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=73.74 E-value=5 Score=37.34 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=26.2
Q ss_pred hcCCCEEEE-cCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 7 KLEIDFVIS-TGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 7 ~~~~d~vv~-~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
+.+|++|+. .||.|-.+...... +....+ +.+. .+ ..-++++||||+..+
T Consensus 688 ~~~~~~l~ld~GD~~~gs~~~~~~--~g~~~~-~~ln--~l-g~d~~~~GNHEfd~g 738 (1163)
T PRK09419 688 EENPNTILVDAGDVYQGSLYSNLL--KGLPVL-KMMK--EM-GYDASTFGNHEFDWG 738 (1163)
T ss_pred hhCCCeEEEecCCCCCCcchhhhc--CChHHH-HHHh--Cc-CCCEEEecccccccC
Confidence 346777655 99988544322111 111111 2221 22 334669999998653
No 111
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=73.52 E-value=3.1 Score=32.99 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=26.7
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCC-CCCCCceEEeCCCcccC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTA-PSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~-~~l~~p~~~vlGNHD~~ 60 (131)
+.+.+|++||-+ +.|..+ .+.+..++.. ....--++.+.||||..
T Consensus 69 ~~~~~lfLGDyV-DRG~~s------~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 69 PNANYIFIGDFV-DRGYNS------VETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CCceEEEeeeEc-CCCCCH------HHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 456799999965 455432 2333333321 11234589999999974
No 112
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=73.15 E-value=6.9 Score=33.27 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.3
Q ss_pred ceEEec-CCeEEEEEEeCCc
Q 040839 82 RSFILD-AEIAEFVFVDTTP 100 (131)
Q Consensus 82 ~~~~~~-~~~v~~~~lDT~~ 100 (131)
.||+|+ .+.++||+|||+.
T Consensus 292 ~YYSFd~~ggvrfIvLDSt~ 311 (496)
T TIGR03767 292 GYYTFDIAGGVRGISMDTTN 311 (496)
T ss_pred ceEEEEeECCEEEEEEeCCC
Confidence 378888 7889999999984
No 113
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=70.26 E-value=5.9 Score=30.96 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=26.1
Q ss_pred CCC-EEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 9 EID-FVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 9 ~~d-~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
.++ +++..||.|-.+.+......+.+.. -+++. .+ .-=++++||||..
T Consensus 49 ~~~~Llld~GD~~qGs~~~~~~~~~g~~~-~~~mN--~m-gyDa~tlGNHEFd 97 (282)
T cd07407 49 GVDLLLVDTGDLHDGNGLSDASPPPGSYS-NPIFR--MM-PYDLLTIGNHELY 97 (282)
T ss_pred CCCEEEEeCCCccCCeeceeeecCCChHH-HHHHH--hc-CCcEEeecccccC
Confidence 454 5778999997665544321122111 12221 11 2335789999995
No 114
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=69.12 E-value=5 Score=31.19 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=24.6
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
+..+++..||++..+..+..... .... +++. .++.- .+++||||+..+
T Consensus 42 ~~~l~ld~GD~~~Gs~~~~~~~g--~~~~-~~~n--~~g~D-a~~~GNHEfD~G 89 (285)
T cd07405 42 GYVLLLSGGDINTGVPESDLQDA--EPDF-RGMN--LVGYD-AMAVGNHEFDNP 89 (285)
T ss_pred CCEEEEeCCCcCCCchhHHhcCc--chHH-HHHH--hhCCc-EEeecccccccC
Confidence 44579999998854433211110 0111 1221 23333 456799999754
No 115
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=67.48 E-value=7 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=29.5
Q ss_pred EEEcCCccCCCCCCCC--CC-hHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 13 VISTGDNFYEDGLTGE--DD-PAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 13 vv~~GDn~Y~~G~~~~--~d-~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
++++||.++..|.... .+ .++..+++.+. .++....++|| |++.
T Consensus 122 ~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~kl~---~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLFEGTASQMYQSLKKIN---ALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCCCCCHHHHHHHHHHHH---cCCCCEEEECC-CCCh
Confidence 6999999998776422 22 35556665443 46666777888 9986
No 116
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=63.62 E-value=5.5 Score=33.84 Aligned_cols=46 Identities=30% Similarity=0.603 Sum_probs=30.3
Q ss_pred hhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 4 IGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
..+..-+|-+=.+|| +|+.|+.+. ..+. .+....++++.| ||||..
T Consensus 185 ~iqrLvVDhLHiVGD-IyDRGP~pd---~Imd---~L~~yhsvDiQW----GNHDil 230 (648)
T COG3855 185 LIQRLVVDHLHIVGD-IYDRGPYPD---KIMD---TLINYHSVDIQW----GNHDIL 230 (648)
T ss_pred HHHHHhhhheeeecc-cccCCCCch---HHHH---HHhhcccccccc----cCcceE
Confidence 344556788888999 789988541 2223 333335677777 999974
No 117
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=63.62 E-value=3.4 Score=32.58 Aligned_cols=17 Identities=53% Similarity=0.991 Sum_probs=14.4
Q ss_pred CCEEEEcCCccCCCCCC
Q 040839 10 IDFVISTGDNFYEDGLT 26 (131)
Q Consensus 10 ~d~vv~~GDn~Y~~G~~ 26 (131)
=+|+|.+|||++..|++
T Consensus 100 ~~f~l~LGDNi~~~~l~ 116 (286)
T COG1209 100 DDFVLYLGDNIFQDGLS 116 (286)
T ss_pred CceEEEecCceeccChH
Confidence 57999999999977664
No 118
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=56.65 E-value=62 Score=26.89 Aligned_cols=88 Identities=15% Similarity=0.257 Sum_probs=51.9
Q ss_pred CCCEEEEcCCccCCCCCCCC------C-ChHHH--HHHHhhcCCCC-CCCceEEeCCCcccCCCchhhcCccccccCCCC
Q 040839 9 EIDFVISTGDNFYEDGLTGE------D-DPAFL--DSFTSIYTAPS-LQKQWYNVLGNHDYRGDVEAQLSPVLTRKDSRW 78 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~------~-d~~~~--~~~~~~~~~~~-l~~p~~~vlGNHD~~~~~~aq~~~~~~~~~~~w 78 (131)
++|+++-.||- . .+.+. . -|.++ ..|-.-|+.+. -+||...|=|||+-. +..-.+.| -.|
T Consensus 30 kVDLLlccGDF--Q-avRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIFIGGNHEAs-nyL~eLpy------GGw 99 (456)
T KOG2863|consen 30 KVDLLLCCGDF--Q-AVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIFIGGNHEAS-NYLQELPY------GGW 99 (456)
T ss_pred CccEEEEccch--H-hhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEEecCchHHH-HHHHhccc------Cce
Confidence 89999999992 1 12211 1 22222 23667776532 358888899999964 33344443 458
Q ss_pred cccceEE------ecCCeEEEEEEeCCcCccccc
Q 040839 79 LCSRSFI------LDAEIAEFVFVDTTPFVDEYF 106 (131)
Q Consensus 79 ~~p~~~~------~~~~~v~~~~lDT~~~~~~y~ 106 (131)
+-|.-|+ ++.+.||+=-|-..+-..+|.
T Consensus 100 VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~ 133 (456)
T KOG2863|consen 100 VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYR 133 (456)
T ss_pred eccceEEeeecceEEECCEEEeeccchhhhhhcc
Confidence 8885443 334667777776554333443
No 119
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=51.73 E-value=13 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCE-EEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 10 IDF-VISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 10 ~d~-vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
|+. .|++||.+ +.|-.+..--.+-- .|. ...+-.|+..-|||+...
T Consensus 86 p~~~ylFLGDYV-DRG~~slE~i~LL~----a~K-i~yp~~~~lLRGNHE~~~ 132 (331)
T KOG0374|consen 86 PDQNYVFLGDYV-DRGKQSLETICLLF----ALK-IKYPENVFLLRGNHECAS 132 (331)
T ss_pred CcccEEEecccc-cCCccceEEeehhh----hhh-hhCCceEEEecccccccc
Confidence 444 89999976 44443321111111 111 234578999999999873
No 120
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=49.45 E-value=16 Score=31.07 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=24.0
Q ss_pred CCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 9 EIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
+..++|..||.|-.+-.+..... .... +++. .+++ =++++||||+..+
T Consensus 76 ~~~l~ldaGD~~~Gs~~s~~~~g--~~~i-~~mN--~~g~-Da~tlGNHEFD~G 123 (551)
T PRK09558 76 GSVLLLSGGDINTGVPESDLQDA--EPDF-RGMN--LIGY-DAMAVGNHEFDNP 123 (551)
T ss_pred CCEEEEcCCccccceEhhhhcCC--chhH-HHHh--cCCC-CEEcccccccCcC
Confidence 35679999998753322211100 0001 1221 2333 3556899999754
No 121
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=48.90 E-value=23 Score=29.80 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=29.0
Q ss_pred hcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCCC
Q 040839 7 KLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRGD 62 (131)
Q Consensus 7 ~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~~ 62 (131)
+.+..++|..||.+-.+.+.+. ..+.+... +++. .-..=++++|||+..-+
T Consensus 67 ~~~~~llld~GD~~~G~~l~~~-~~~g~~~~-~~mN---~m~yDa~tiGNHEFd~g 117 (517)
T COG0737 67 ENKNVLLLDAGDLIQGSPLSDY-LTKGEPTV-DLLN---ALGYDAMTLGNHEFDYG 117 (517)
T ss_pred hcCCeEEEeCCcccCCcccccc-ccCCChHH-HHHh---hcCCcEEeecccccccC
Confidence 4456789999999866555543 11111111 1221 11234678999999754
No 122
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=48.64 E-value=13 Score=29.89 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=28.1
Q ss_pred hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceE-EeCCCccc
Q 040839 2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWY-NVLGNHDY 59 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~-~vlGNHD~ 59 (131)
.++.++.+||+|+..||.+ +.+........+++|+. +--|++-+
T Consensus 86 ~~~~~~~~Pd~vlv~GD~~--------------~~la~alaA~~~~IPv~HveaG~rs~ 130 (365)
T TIGR03568 86 SDAFERLKPDLVVVLGDRF--------------EMLAAAIAAALLNIPIAHIHGGEVTE 130 (365)
T ss_pred HHHHHHhCCCEEEEeCCch--------------HHHHHHHHHHHhCCcEEEEECCccCC
Confidence 4566788999999999943 22332222234679988 55666743
No 123
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=46.05 E-value=10 Score=30.37 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=23.3
Q ss_pred hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEEeCC
Q 040839 2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLG 55 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlG 55 (131)
+.+.++.+||+||.+||-+ .-+....-. ..+++|+.-+=|
T Consensus 60 ~~~~~~~~Pd~Vlv~GD~~----------~~la~alaA----~~~~ipv~Hiea 99 (346)
T PF02350_consen 60 ADVLEREKPDAVLVLGDRN----------EALAAALAA----FYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHT-SEEEEETTSH----------HHHHHHHHH----HHTT-EEEEES-
T ss_pred HHHHHhcCCCEEEEEcCCc----------hHHHHHHHH----HHhCCCEEEecC
Confidence 4567789999999999943 223322222 236799766553
No 124
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=43.49 E-value=35 Score=28.19 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=26.5
Q ss_pred hhhhhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhcCCCCCCCceEE-eCCCc
Q 040839 2 GLIGEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIYTAPSLQKQWYN-VLGNH 57 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~-vlGNH 57 (131)
.++.++.+||.|+..||. ..-+..++... .+++|+.- --|+.
T Consensus 85 ~~vl~~~kPD~VlVhGDT----------~t~lA~alaa~----~~~IpV~HvEAGlR 127 (383)
T COG0381 85 SKVLEEEKPDLVLVHGDT----------NTTLAGALAAF----YLKIPVGHVEAGLR 127 (383)
T ss_pred HHHHHhhCCCEEEEeCCc----------chHHHHHHHHH----HhCCceEEEecccc
Confidence 456788999999999993 23343333322 25688654 45665
No 125
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=39.84 E-value=20 Score=28.13 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.1
Q ss_pred CCceEEeCCCcccCC
Q 040839 47 QKQWYNVLGNHDYRG 61 (131)
Q Consensus 47 ~~p~~~vlGNHD~~~ 61 (131)
+-.+..+-|||+-+.
T Consensus 101 P~ritLiRGNHEsRq 115 (303)
T KOG0372|consen 101 PDRITLIRGNHESRQ 115 (303)
T ss_pred cceeEEeeccchhhh
Confidence 456889999999874
No 126
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=36.64 E-value=36 Score=25.99 Aligned_cols=30 Identities=10% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCCCC-CCceEEeCCCcccCCC
Q 040839 33 FLDSFTSIYTAPSL-QKQWYNVLGNHDYRGD 62 (131)
Q Consensus 33 ~~~~~~~~~~~~~l-~~p~~~vlGNHD~~~~ 62 (131)
++..+++++...+. .-||++|+|||-+...
T Consensus 180 y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~ 210 (230)
T TIGR03707 180 YSRAKDEMFARTDTPEAPWTVVRSDDKKRAR 210 (230)
T ss_pred HHHHHHHHHHhcCCCCCCeEEEcCCCHHHHH
Confidence 33445555543344 4799999999988653
No 127
>PLN02469 hydroxyacylglutathione hydrolase
Probab=34.65 E-value=71 Score=24.49 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred EEEcCCccCCCCCCCC--CC-hHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 13 VISTGDNFYEDGLTGE--DD-PAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 13 vv~~GDn~Y~~G~~~~--~d-~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
++++||.++..|+... .+ .++..++++... .|+-...+.|| |+|..
T Consensus 130 ~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~~~l~--~Lp~~t~vypG-H~yt~ 178 (258)
T PLN02469 130 AVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLG--SLPKPTQVYCG-HEYTV 178 (258)
T ss_pred EEEecCcccCCCcCCCCCCCHHHHHHHHHHHHH--cCCCCeEEEcC-CCCch
Confidence 7999999988776422 33 356666654442 35555566666 77764
No 128
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=33.12 E-value=2.4e+02 Score=22.13 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=26.8
Q ss_pred hhhhcCCCEEEEcCCccCC-CCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 4 IGEKLEIDFVISTGDNFYE-DGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 4 ~~~~~~~d~vv~~GDn~Y~-~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
+-++.++||||..|-|--. .|++ ... ++.... . .-=++++|||=|..
T Consensus 25 lk~kyk~dfvI~N~ENaa~G~Git----~k~---y~~l~~---~-G~dviT~GNH~wd~ 72 (266)
T COG1692 25 LKSKYKIDFVIVNGENAAGGFGIT----EKI---YKELLE---A-GADVITLGNHTWDQ 72 (266)
T ss_pred HHHhhcCcEEEEcCccccCCcCCC----HHH---HHHHHH---h-CCCEEecccccccc
Confidence 4456789999999998621 2221 122 222221 1 22256899999964
No 129
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=30.63 E-value=37 Score=26.43 Aligned_cols=48 Identities=29% Similarity=0.473 Sum_probs=22.6
Q ss_pred hhhhhcCCCEEEEcCCccCC-CCCCCCCChHHHHHHHhhcCCCCCCCceEEeCCCcccCC
Q 040839 3 LIGEKLEIDFVISTGDNFYE-DGLTGEDDPAFLDSFTSIYTAPSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~vv~~GDn~Y~-~G~~~~~d~~~~~~~~~~~~~~~l~~p~~~vlGNHD~~~ 61 (131)
++-++.++||||..|.|.-. .|++ ++- .++++. ..+- ..+.|||=|..
T Consensus 21 ~L~~~~~~DfVIaNgENaa~G~Git----~~~---~~~L~~---~GvD-viT~GNH~wdk 69 (253)
T PF13277_consen 21 ELKEEYGIDFVIANGENAAGGFGIT----PKI---AEELFK---AGVD-VITMGNHIWDK 69 (253)
T ss_dssp HHGG--G-SEEEEE-TTTTTTSS------HHH---HHHHHH---HT-S-EEE--TTTTSS
T ss_pred HHHhhcCCCEEEECCcccCCCCCCC----HHH---HHHHHh---cCCC-EEecCcccccC
Confidence 34467789999999999731 2232 222 223331 2232 35699999974
No 130
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=29.80 E-value=76 Score=20.93 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=14.9
Q ss_pred hhhcCCCEEEEcCCccCCCCCCCCCChHHHHHHHhhc
Q 040839 5 GEKLEIDFVISTGDNFYEDGLTGEDDPAFLDSFTSIY 41 (131)
Q Consensus 5 ~~~~~~d~vv~~GDn~Y~~G~~~~~d~~~~~~~~~~~ 41 (131)
.+..+-.=.|.+|| ++..|++.+..+.+.+
T Consensus 59 ~~~fP~~kfiLIGD-------sgq~DpeiY~~ia~~~ 88 (100)
T PF09949_consen 59 LRDFPERKFILIGD-------SGQHDPEIYAEIARRF 88 (100)
T ss_pred HHHCCCCcEEEEee-------CCCcCHHHHHHHHHHC
Confidence 33334334556666 2345666655554444
No 131
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=29.55 E-value=68 Score=28.00 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.5
Q ss_pred CCCEEEEcCCccCCCCC
Q 040839 9 EIDFVISTGDNFYEDGL 25 (131)
Q Consensus 9 ~~d~vv~~GDn~Y~~G~ 25 (131)
+..++|..||.|-.+-+
T Consensus 46 ~n~lllD~GD~~qGsp~ 62 (626)
T TIGR01390 46 KNSVLVDNGDLIQGSPL 62 (626)
T ss_pred CCeEEEECCCcCCCccc
Confidence 45689999999865433
No 132
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=28.83 E-value=29 Score=20.11 Aligned_cols=11 Identities=55% Similarity=1.253 Sum_probs=5.9
Q ss_pred EeCCCc-ccCCC
Q 040839 52 NVLGNH-DYRGD 62 (131)
Q Consensus 52 ~vlGNH-D~~~~ 62 (131)
.++||| ||.++
T Consensus 23 nliGeHtDy~gG 34 (52)
T PF10509_consen 23 NLIGEHTDYNGG 34 (52)
T ss_dssp EEE-TT-GGGT-
T ss_pred EecCcccccCCC
Confidence 356899 66553
No 133
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=27.98 E-value=59 Score=26.25 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCCE-EEEcCCccCCCCCCCCCChHHHH---HHHhhcCC----CCCCCceEEeCCCcccCC
Q 040839 9 EIDF-VISTGDNFYEDGLTGEDDPAFLD---SFTSIYTA----PSLQKQWYNVLGNHDYRG 61 (131)
Q Consensus 9 ~~d~-vv~~GDn~Y~~G~~~~~d~~~~~---~~~~~~~~----~~l~~p~~~vlGNHD~~~ 61 (131)
.|-+ +|.-||.+-+-|..+ .+|+--. .|+..|+. .-+.+|+|.=+||||...
T Consensus 125 ~~plGlV~ggDitddgggq~-~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq 184 (392)
T COG5555 125 NCPLGLVEGGDITDDGGGQS-FQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQ 184 (392)
T ss_pred CCceeEEeecceeccCCCcc-cCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcc
Confidence 3444 555678775544433 2333222 25555532 124589999999999864
No 134
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=26.79 E-value=42 Score=21.76 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=9.8
Q ss_pred CEEEEcCCccCCC
Q 040839 11 DFVISTGDNFYED 23 (131)
Q Consensus 11 d~vv~~GDn~Y~~ 23 (131)
.-|+.+|+||++.
T Consensus 17 t~VtI~GenF~~g 29 (85)
T cd01175 17 ATVIIIGDNFFDG 29 (85)
T ss_pred eEEEEECCCCCCC
Confidence 3488899999743
No 135
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=25.41 E-value=38 Score=26.77 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=11.1
Q ss_pred cCCCEEEEcCCccCC
Q 040839 8 LEIDFVISTGDNFYE 22 (131)
Q Consensus 8 ~~~d~vv~~GDn~Y~ 22 (131)
.+..++|..||.|-+
T Consensus 37 ~~~~l~ldaGD~~qG 51 (313)
T cd08162 37 YDNTLTLSSGDNFIP 51 (313)
T ss_pred CCCeEEEecCccccC
Confidence 345689999998843
No 136
>PLN02962 hydroxyacylglutathione hydrolase
Probab=25.03 E-value=1.2e+02 Score=23.19 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=26.3
Q ss_pred EEEcCCccCCCCCCCC----CCh-HHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 13 VISTGDNFYEDGLTGE----DDP-AFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 13 vv~~GDn~Y~~G~~~~----~d~-~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
++++||.++..|+.-. .++ .+..++.+.+. .++--..+.|| |++.
T Consensus 145 ~lftGD~Lf~~g~Gr~d~~~g~~~~l~~Sl~~~l~--~L~~~~~i~PG-Hg~~ 194 (251)
T PLN02962 145 MAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQIF--TLPKDTLIYPA-HDYK 194 (251)
T ss_pred eEEECCeeccCCcCCCCCCCCCHHHHHHHHHHHHH--cCCCCeEEECC-CCCC
Confidence 7999999998777432 232 44444543332 24433666677 7764
No 137
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=24.04 E-value=52 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.222 Sum_probs=14.4
Q ss_pred hhhhhhcCCCEEEEcCC
Q 040839 2 GLIGEKLEIDFVISTGD 18 (131)
Q Consensus 2 ~~~~~~~~~d~vv~~GD 18 (131)
.++.++.+||+|+..||
T Consensus 79 ~~~l~~~~pDiv~~~gd 95 (365)
T TIGR00236 79 EELLLEEKPDIVLVQGD 95 (365)
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 45667889999999999
No 138
>PLN02398 hydroxyacylglutathione hydrolase
Probab=23.77 E-value=1e+02 Score=24.75 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=25.8
Q ss_pred EEEcCCccCCCCCCCC--CCh-HHHHHHHhhcCCCCCCCceEEeCCCcccC
Q 040839 13 VISTGDNFYEDGLTGE--DDP-AFLDSFTSIYTAPSLQKQWYNVLGNHDYR 60 (131)
Q Consensus 13 vv~~GDn~Y~~G~~~~--~d~-~~~~~~~~~~~~~~l~~p~~~vlGNHD~~ 60 (131)
++++||.++..|.... .++ ++..+++.+. +++....+.|| |++.
T Consensus 201 vLFtGDtLf~~g~Gr~feg~~~~~~~SL~rL~---~L~~~t~VypG-Hgyt 247 (329)
T PLN02398 201 AIFTGDTLFSLSCGKLFEGTPEQMLSSLQKII---SLPDDTNIYCG-HEYT 247 (329)
T ss_pred EEEECCCcCCCCcCCCCCCCHHHHHHHHHHHH---cCCCCeEEECC-CCCh
Confidence 6899999998765422 333 5555565433 34433444454 8774
No 139
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=21.24 E-value=81 Score=27.58 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=33.5
Q ss_pred hhhhhcCCCE-EEEcCCccCCCCCCCCCChH-HHHHHHhhcCCCCCCCc-eEEeCCCcccCC
Q 040839 3 LIGEKLEIDF-VISTGDNFYEDGLTGEDDPA-FLDSFTSIYTAPSLQKQ-WYNVLGNHDYRG 61 (131)
Q Consensus 3 ~~~~~~~~d~-vv~~GDn~Y~~G~~~~~d~~-~~~~~~~~~~~~~l~~p-~~~vlGNHD~~~ 61 (131)
.+|....|++ ++.+||.--..|.++..+|+ ..+.+--.+ .| =.+++|||+...
T Consensus 80 ~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~------~~yD~l~lGNHEl~~ 135 (602)
T KOG4419|consen 80 ELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKM------MPYDILTLGNHELYQ 135 (602)
T ss_pred HHHhccCCCEEEEecccccCCceeeeccCCchHHHHHHHhc------Cccchhhhcchhhhh
Confidence 3455666776 78899987778887776665 433322111 22 245799999864
Done!