Query 040841
Match_columns 280
No_of_seqs 233 out of 1388
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.6E-35 2.2E-39 231.5 10.1 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 3.3E-34 1.1E-38 236.4 11.9 109 13-122 1-109 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.5E-34 5.2E-39 230.7 8.3 105 14-119 1-105 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 6.7E-34 2.3E-38 233.4 9.3 108 8-116 21-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 1.2E-33 4E-38 231.7 9.9 106 8-115 5-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 6.4E-33 2.2E-37 235.3 4.6 119 12-131 4-123 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.7E-31 5.8E-36 226.5 9.2 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 8.9E-24 3E-28 173.1 3.4 91 40-131 1-92 (128)
9 2dim_A Cell division cycle 5-l 99.9 3.9E-23 1.3E-27 152.8 3.7 67 8-75 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.7 9.1E-19 3.1E-23 156.4 6.7 106 9-115 3-200 (246)
11 2juh_A Telomere binding protei 99.7 4.9E-19 1.7E-23 144.0 3.8 82 9-91 12-103 (121)
12 2d9a_A B-MYB, MYB-related prot 99.7 1.5E-18 5E-23 124.4 4.8 58 8-66 2-59 (60)
13 2llk_A Cyclin-D-binding MYB-li 99.7 1.6E-18 5.6E-23 129.4 3.9 57 54-111 10-66 (73)
14 1gvd_A MYB proto-oncogene prot 99.7 2.4E-18 8.1E-23 119.9 4.3 52 12-64 1-52 (52)
15 2roh_A RTBP1, telomere binding 99.7 3.4E-18 1.2E-22 139.2 5.7 79 9-88 26-114 (122)
16 2dim_A Cell division cycle 5-l 99.7 4.9E-18 1.7E-22 125.3 5.0 65 62-126 4-69 (70)
17 1guu_A C-MYB, MYB proto-oncoge 99.7 3.8E-18 1.3E-22 118.8 3.3 52 12-64 1-52 (52)
18 2din_A Cell division cycle 5-l 99.7 1.1E-17 3.9E-22 122.0 5.8 61 60-121 2-62 (66)
19 1ity_A TRF1; helix-turn-helix, 99.7 5.7E-18 2E-22 124.7 3.6 62 9-71 5-68 (69)
20 2cu7_A KIAA1915 protein; nucle 99.7 2.9E-17 9.9E-22 121.9 6.2 64 61-125 3-66 (72)
21 1x41_A Transcriptional adaptor 99.6 5.6E-17 1.9E-21 116.3 3.9 56 9-65 3-58 (60)
22 2d9a_A B-MYB, MYB-related prot 99.6 6.9E-17 2.3E-21 115.6 4.2 55 62-116 3-58 (60)
23 3sjm_A Telomeric repeat-bindin 99.6 3.6E-17 1.2E-21 119.1 2.8 55 11-66 8-64 (64)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 2.2E-16 7.5E-21 109.8 5.0 50 65-114 1-51 (52)
25 1gvd_A MYB proto-oncogene prot 99.6 3.6E-16 1.2E-20 108.8 5.3 50 65-114 1-51 (52)
26 1w0t_A Telomeric repeat bindin 99.6 1.9E-16 6.4E-21 110.7 3.0 49 13-62 1-51 (53)
27 1ity_A TRF1; helix-turn-helix, 99.6 6.6E-16 2.2E-20 113.6 5.6 61 60-120 3-66 (69)
28 2yum_A ZZZ3 protein, zinc fing 99.6 1.6E-16 5.4E-21 118.6 2.1 62 8-70 2-68 (75)
29 2din_A Cell division cycle 5-l 99.6 1.3E-16 4.4E-21 116.4 0.4 58 8-68 3-60 (66)
30 2elk_A SPCC24B10.08C protein; 99.6 6.3E-16 2.1E-20 110.2 3.3 52 10-61 5-56 (58)
31 1x41_A Transcriptional adaptor 99.6 1.1E-15 3.9E-20 109.5 4.6 53 62-114 3-56 (60)
32 1w0t_A Telomeric repeat bindin 99.6 1.6E-15 5.5E-20 106.0 4.9 49 66-114 1-52 (53)
33 3osg_A MYB21; transcription-DN 99.6 1.6E-15 5.5E-20 123.8 4.0 70 62-131 6-75 (126)
34 2yum_A ZZZ3 protein, zinc fing 99.5 2.8E-15 9.6E-20 111.8 4.5 58 62-119 3-66 (75)
35 2cu7_A KIAA1915 protein; nucle 99.5 1E-15 3.5E-20 113.5 2.0 59 7-67 2-60 (72)
36 1gv2_A C-MYB, MYB proto-oncoge 99.5 1.9E-15 6.6E-20 119.2 3.6 68 64-131 1-69 (105)
37 3sjm_A Telomeric repeat-bindin 99.5 5.8E-15 2E-19 107.4 4.6 52 65-116 9-63 (64)
38 2elk_A SPCC24B10.08C protein; 99.5 1E-14 3.5E-19 103.9 5.1 51 62-112 4-56 (58)
39 2ltp_A Nuclear receptor corepr 99.2 1.8E-15 6.2E-20 116.8 0.0 56 60-115 9-64 (89)
40 2aje_A Telomere repeat-binding 99.5 1.8E-14 6.3E-19 114.4 5.4 79 8-87 7-95 (105)
41 3zqc_A MYB3; transcription-DNA 99.5 1.4E-14 4.7E-19 118.9 4.7 65 67-131 2-67 (131)
42 2k9n_A MYB24; R2R3 domain, DNA 99.5 6.9E-15 2.4E-19 116.7 2.9 65 67-131 1-66 (107)
43 2ckx_A NGTRF1, telomere bindin 99.5 3.8E-14 1.3E-18 108.2 5.3 69 15-84 1-79 (83)
44 2llk_A Cyclin-D-binding MYB-li 99.5 2.5E-14 8.7E-19 106.6 3.9 58 6-67 15-72 (73)
45 2yus_A SWI/SNF-related matrix- 99.4 7.4E-14 2.5E-18 105.6 4.2 53 6-60 10-62 (79)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.4E-13 8.3E-18 101.3 5.1 51 63-113 14-68 (73)
47 2ltp_A Nuclear receptor corepr 99.0 7.1E-14 2.4E-18 107.8 0.0 55 7-63 9-63 (89)
48 2yus_A SWI/SNF-related matrix- 99.3 3.4E-13 1.2E-17 101.9 3.3 48 64-111 15-62 (79)
49 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.1E-13 1.4E-17 100.1 2.4 55 7-62 11-68 (73)
50 1ign_A Protein (RAP1); RAP1,ye 99.3 9.3E-13 3.2E-17 117.7 4.4 68 63-131 4-77 (246)
51 2juh_A Telomere binding protei 99.3 1.3E-12 4.4E-17 106.1 2.5 54 61-114 11-69 (121)
52 2aje_A Telomere repeat-binding 99.3 6.6E-12 2.2E-16 99.7 6.3 54 62-115 8-66 (105)
53 1x58_A Hypothetical protein 49 99.3 5.7E-12 2E-16 90.6 5.3 49 66-114 7-58 (62)
54 2ckx_A NGTRF1, telomere bindin 99.3 4.7E-12 1.6E-16 96.5 5.1 48 68-115 1-53 (83)
55 2roh_A RTBP1, telomere binding 99.2 4.6E-12 1.6E-16 103.1 4.7 53 62-114 26-83 (122)
56 2cjj_A Radialis; plant develop 99.2 2.1E-11 7.3E-16 94.8 5.1 50 66-115 7-60 (93)
57 2cjj_A Radialis; plant develop 99.0 5E-11 1.7E-15 92.7 2.0 48 13-61 7-57 (93)
58 3hm5_A DNA methyltransferase 1 99.0 5.2E-10 1.8E-14 86.8 5.7 67 50-120 17-88 (93)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1.1E-09 3.9E-14 78.4 5.4 46 66-111 11-56 (61)
60 1x58_A Hypothetical protein 49 98.9 1.1E-09 3.7E-14 78.8 3.2 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.7E-09 5.9E-14 80.2 4.4 51 64-115 5-59 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 2.4E-09 8.2E-14 76.7 3.7 52 8-61 6-57 (61)
63 2iw5_B Protein corest, REST co 98.7 1.2E-08 4.2E-13 90.4 5.1 49 66-114 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.6 1.5E-08 5.3E-13 75.0 2.5 50 10-61 4-56 (72)
65 1fex_A TRF2-interacting telome 98.6 1.6E-08 5.3E-13 72.2 2.3 48 14-62 2-58 (59)
66 2xag_B REST corepressor 1; ami 98.5 4.1E-08 1.4E-12 95.9 3.9 44 68-111 381-424 (482)
67 1wgx_A KIAA1903 protein; MYB D 98.5 9.5E-08 3.2E-12 70.9 4.6 46 67-112 8-57 (73)
68 1wgx_A KIAA1903 protein; MYB D 98.5 4.6E-08 1.6E-12 72.6 2.6 48 14-62 8-58 (73)
69 2iw5_B Protein corest, REST co 98.4 1.8E-07 6.1E-12 83.0 3.8 51 10-62 129-179 (235)
70 1fex_A TRF2-interacting telome 98.3 3.7E-07 1.3E-11 65.0 4.2 47 67-113 2-58 (59)
71 4eef_G F-HB80.4, designed hema 98.1 9.8E-07 3.4E-11 65.3 2.1 44 14-58 20-66 (74)
72 4eef_G F-HB80.4, designed hema 98.1 8.1E-07 2.8E-11 65.7 1.5 43 67-109 20-66 (74)
73 1ug2_A 2610100B20RIK gene prod 98.1 4E-06 1.4E-10 64.3 5.0 51 69-119 35-88 (95)
74 2yqk_A Arginine-glutamic acid 98.1 4.3E-06 1.5E-10 60.1 5.0 49 62-110 4-53 (63)
75 1ofc_X ISWI protein; nuclear p 98.0 6.5E-06 2.2E-10 76.2 6.6 101 15-116 111-277 (304)
76 2lr8_A CAsp8-associated protei 97.2 1E-06 3.5E-11 64.1 0.0 45 69-114 16-63 (70)
77 2yqk_A Arginine-glutamic acid 98.0 6.2E-06 2.1E-10 59.2 4.1 51 7-59 2-53 (63)
78 4iej_A DNA methyltransferase 1 97.8 2.6E-05 8.9E-10 60.2 5.7 61 55-119 22-87 (93)
79 2crg_A Metastasis associated p 97.6 8.2E-05 2.8E-09 54.5 4.7 43 67-109 8-51 (70)
80 4a69_C Nuclear receptor corepr 97.6 7.4E-05 2.5E-09 57.8 4.7 44 67-110 43-86 (94)
81 2xag_B REST corepressor 1; ami 97.5 3.9E-05 1.3E-09 75.0 3.7 49 11-61 377-425 (482)
82 3hm5_A DNA methyltransferase 1 97.5 4.8E-05 1.7E-09 58.8 2.7 49 12-61 28-80 (93)
83 4a69_C Nuclear receptor corepr 97.3 0.00012 4.1E-09 56.6 2.8 44 14-59 43-86 (94)
84 2crg_A Metastasis associated p 97.2 0.00015 5.2E-09 53.0 3.0 45 13-59 7-52 (70)
85 2ebi_A DNA binding protein GT- 97.0 0.00025 8.7E-09 53.3 2.3 49 67-115 4-66 (86)
86 2ebi_A DNA binding protein GT- 97.0 0.00011 3.8E-09 55.3 -0.1 48 13-60 3-62 (86)
87 2y9y_A Imitation switch protei 96.7 0.0023 8E-08 60.6 6.8 102 15-117 124-294 (374)
88 1ug2_A 2610100B20RIK gene prod 96.7 0.0019 6.4E-08 49.5 4.6 48 11-59 30-79 (95)
89 4b4c_A Chromodomain-helicase-D 96.5 0.0016 5.6E-08 56.3 3.8 32 12-43 5-38 (211)
90 2lr8_A CAsp8-associated protei 95.3 0.00059 2E-08 49.6 0.0 49 11-61 11-61 (70)
91 4b4c_A Chromodomain-helicase-D 95.7 0.0085 2.9E-07 51.7 4.3 39 4-42 124-162 (211)
92 4iej_A DNA methyltransferase 1 95.1 0.011 3.8E-07 45.4 2.7 48 12-60 28-79 (93)
93 1irz_A ARR10-B; helix-turn-hel 94.7 0.044 1.5E-06 39.3 4.7 47 65-111 5-56 (64)
94 1ofc_X ISWI protein; nuclear p 93.5 0.1 3.4E-06 48.2 5.8 48 67-114 110-158 (304)
95 2xb0_X Chromo domain-containin 92.4 0.1 3.5E-06 47.4 4.2 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 86.2 0.65 2.2E-05 33.2 3.5 49 11-59 4-55 (64)
97 2xb0_X Chromo domain-containin 77.2 3.7 0.00013 37.1 5.9 49 67-115 3-56 (270)
98 2o8x_A Probable RNA polymerase 59.1 6.5 0.00022 26.5 2.8 42 70-113 16-57 (70)
99 3cz6_A DNA-binding protein RAP 56.0 9.2 0.00032 32.1 3.6 25 10-34 110-142 (168)
100 1ku3_A Sigma factor SIGA; heli 55.9 8 0.00027 26.8 2.8 41 73-114 13-57 (73)
101 2rq5_A Protein jumonji; develo 55.3 4 0.00014 32.4 1.2 45 36-83 65-113 (121)
102 2li6_A SWI/SNF chromatin-remod 54.1 3.4 0.00012 32.3 0.6 39 24-63 53-98 (116)
103 1u78_A TC3 transposase, transp 53.7 52 0.0018 24.8 7.6 87 15-108 5-100 (141)
104 2li6_A SWI/SNF chromatin-remod 53.3 6.1 0.00021 30.8 2.0 38 78-115 54-99 (116)
105 2y9y_A Imitation switch protei 53.0 17 0.00058 34.3 5.3 45 68-112 124-170 (374)
106 2lm1_A Lysine-specific demethy 50.6 14 0.00047 28.1 3.6 39 77-115 48-98 (107)
107 2jrz_A Histone demethylase jar 49.9 13 0.00043 29.0 3.3 39 77-115 44-94 (117)
108 2p7v_B Sigma-70, RNA polymeras 49.7 8.7 0.0003 26.2 2.1 40 74-114 9-52 (68)
109 1ig6_A MRF-2, modulator recogn 46.9 6 0.00021 30.3 1.0 40 24-63 37-87 (107)
110 2jrz_A Histone demethylase jar 46.7 5.4 0.00018 31.2 0.7 40 24-63 44-93 (117)
111 2q1z_A RPOE, ECF SIGE; ECF sig 45.2 24 0.00083 28.0 4.5 31 83-114 148-178 (184)
112 2cxy_A BAF250B subunit, HBAF25 45.1 17 0.00058 28.6 3.4 38 78-115 56-105 (125)
113 2eqy_A RBP2 like, jumonji, at 44.9 17 0.00058 28.5 3.4 38 78-115 47-96 (122)
114 3cz6_A DNA-binding protein RAP 42.5 20 0.00069 30.0 3.6 34 53-86 99-141 (168)
115 1c20_A DEAD ringer protein; DN 42.0 6.5 0.00022 31.1 0.5 40 24-63 56-106 (128)
116 1kkx_A Transcription regulator 41.4 8.5 0.00029 30.5 1.1 40 78-117 53-100 (123)
117 3hug_A RNA polymerase sigma fa 41.4 17 0.00059 26.2 2.8 40 73-113 40-79 (92)
118 1c20_A DEAD ringer protein; DN 38.0 25 0.00086 27.6 3.4 39 77-115 56-107 (128)
119 2cxy_A BAF250B subunit, HBAF25 36.8 13 0.00046 29.2 1.6 40 24-63 55-104 (125)
120 2eqy_A RBP2 like, jumonji, at 36.5 8.8 0.0003 30.2 0.5 40 24-63 46-95 (122)
121 2rq5_A Protein jumonji; develo 36.5 23 0.00077 28.0 2.9 77 14-116 7-98 (121)
122 2jxj_A Histone demethylase jar 36.0 11 0.00039 28.0 1.0 37 78-114 41-89 (96)
123 2kk0_A AT-rich interactive dom 35.6 12 0.00041 30.3 1.1 53 24-76 68-133 (145)
124 2kk0_A AT-rich interactive dom 34.3 29 0.00098 28.0 3.3 39 77-115 68-119 (145)
125 2yqf_A Ankyrin-1; death domain 33.5 32 0.0011 26.2 3.3 36 70-106 13-48 (111)
126 1tty_A Sigma-A, RNA polymerase 33.3 29 0.00098 24.8 2.8 39 74-113 22-64 (87)
127 1zda_A Mini protein A domain, 33.2 27 0.00091 22.2 2.2 22 257-278 13-35 (38)
128 1l6x_B Minimized B-domain of p 33.1 24 0.00082 21.8 1.9 22 257-278 8-30 (34)
129 1or7_A Sigma-24, RNA polymeras 31.2 36 0.0012 27.1 3.4 30 84-114 154-183 (194)
130 1x3u_A Transcriptional regulat 31.2 47 0.0016 22.7 3.6 40 70-112 17-56 (79)
131 1k78_A Paired box protein PAX5 30.1 1.2E+02 0.004 23.3 6.2 67 14-85 30-106 (149)
132 3e7l_A Transcriptional regulat 27.8 45 0.0015 22.5 2.9 35 73-108 19-53 (63)
133 3c57_A Two component transcrip 27.6 51 0.0017 24.0 3.4 42 69-113 27-68 (95)
134 1ntc_A Protein (nitrogen regul 27.4 64 0.0022 23.4 3.9 35 73-108 51-85 (91)
135 3ulq_B Transcriptional regulat 27.1 63 0.0022 23.4 3.8 45 67-114 27-71 (90)
136 2of5_H Leucine-rich repeat and 27.1 32 0.0011 26.6 2.3 31 75-106 13-43 (118)
137 1xsv_A Hypothetical UPF0122 pr 27.1 51 0.0017 25.0 3.4 39 74-113 29-67 (113)
138 1wxp_A THO complex subunit 1; 26.6 53 0.0018 24.9 3.5 31 75-106 18-48 (110)
139 2of5_A Death domain-containing 26.5 38 0.0013 26.2 2.6 40 63-106 15-54 (114)
140 2o71_A Death domain-containing 26.1 39 0.0013 26.2 2.6 36 67-106 19-54 (115)
141 1je8_A Nitrate/nitrite respons 25.9 50 0.0017 23.3 3.0 41 69-112 21-61 (82)
142 2p1m_A SKP1-like protein 1A; F 25.8 36 0.0012 27.5 2.5 35 38-80 119-153 (160)
143 1fse_A GERE; helix-turn-helix 25.6 53 0.0018 21.9 3.0 42 68-112 10-51 (74)
144 2jpc_A SSRB; DNA binding prote 25.1 65 0.0022 20.7 3.3 37 75-113 3-39 (61)
145 3i4p_A Transcriptional regulat 24.9 21 0.00072 28.7 0.9 43 20-64 3-45 (162)
146 2nml_A Enhancer of rudimentary 24.1 51 0.0018 25.4 2.8 31 249-279 30-65 (104)
147 3i4p_A Transcriptional regulat 23.9 34 0.0012 27.4 2.0 44 73-117 3-47 (162)
148 1rp3_A RNA polymerase sigma fa 23.3 58 0.002 26.6 3.4 37 76-113 193-229 (239)
149 1ef4_A Subunit N, DNA-directed 23.2 45 0.0015 22.9 2.1 20 247-266 9-28 (55)
150 3mzy_A RNA polymerase sigma-H 22.9 50 0.0017 25.2 2.7 29 84-113 122-150 (164)
151 1tc3_C Protein (TC3 transposas 22.7 1E+02 0.0036 18.1 3.8 38 69-108 5-42 (51)
152 2rnj_A Response regulator prot 22.4 61 0.0021 23.1 2.9 41 69-112 29-69 (91)
153 1dee_G Immunoglobulin G bindin 22.1 47 0.0016 22.6 2.0 21 258-278 9-30 (54)
154 2kzi_A Engineered protein, ZHE 20.2 38 0.0013 24.2 1.3 21 258-278 25-46 (70)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=6.6e-35 Score=231.46 Aligned_cols=105 Identities=44% Similarity=0.829 Sum_probs=99.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCccc
Q 040841 11 GLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWS 90 (280)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~ 90 (280)
++++|+||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999999899999999998 9999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHhhhhHH
Q 040841 91 LIAGRLPGRTDNEIKNYWNTHLSKRL 116 (280)
Q Consensus 91 ~IA~~lpgRt~~qck~Rw~~~l~~~~ 116 (280)
.||+.|||||+++|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999987753
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=3.3e-34 Score=236.40 Aligned_cols=109 Identities=41% Similarity=0.780 Sum_probs=104.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCccccc
Q 040841 13 QRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLI 92 (280)
Q Consensus 13 kkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~I 92 (280)
.||+||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++|+||+|||++|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3799999999999999999998899999999998 999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHhhhhHHhhCCCC
Q 040841 93 AGRLPGRTDNEIKNYWNTHLSKRLRVQGTD 122 (280)
Q Consensus 93 A~~lpgRt~~qck~Rw~~~l~~~~~~~~~~ 122 (280)
|+.|||||+++|++||+++|++++....++
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNH 109 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTS
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCc
Confidence 999999999999999999999998776554
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.5e-34 Score=230.67 Aligned_cols=105 Identities=29% Similarity=0.531 Sum_probs=100.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCcccccc
Q 040841 14 RGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIA 93 (280)
Q Consensus 14 kg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA 93 (280)
||+||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999999899999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhHHhhC
Q 040841 94 GRLPGRTDNEIKNYWNTHLSKRLRVQ 119 (280)
Q Consensus 94 ~~lpgRt~~qck~Rw~~~l~~~~~~~ 119 (280)
+.|||||+++|++||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999988766543
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=6.7e-34 Score=233.42 Aligned_cols=108 Identities=43% Similarity=0.807 Sum_probs=102.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGN 87 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~ 87 (280)
.+|++++|+||+|||++|+++|+.||.++|..||..|++ |++.||++||.++|+|.+++++||+|||++|++++.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 468999999999999999999999998899999999998 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhhHH
Q 040841 88 RWSLIAGRLPGRTDNEIKNYWNTHLSKRL 116 (280)
Q Consensus 88 ~W~~IA~~lpgRt~~qck~Rw~~~l~~~~ 116 (280)
+|+.||+.|||||+++|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999887653
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.2e-33 Score=231.75 Aligned_cols=106 Identities=35% Similarity=0.648 Sum_probs=101.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGN 87 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~ 87 (280)
.+++.+||+||+|||++|+++|..||. +|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999998 99999999998 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhhH
Q 040841 88 RWSLIAGRLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 88 ~W~~IA~~lpgRt~~qck~Rw~~~l~~~ 115 (280)
+|..||+.|||||+++|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999877553
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=6.4e-33 Score=235.28 Aligned_cols=119 Identities=27% Similarity=0.594 Sum_probs=76.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ccc
Q 040841 12 LQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGN-RWS 90 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~-~W~ 90 (280)
+++++||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 68999999999999999999999899999999998 9999999999999999999999999999999999999995 799
Q ss_pred cccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccccccCCC
Q 040841 91 LIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTHKKLSE 131 (280)
Q Consensus 91 ~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~~~l~~ 131 (280)
.||..|||||+.||++||+++|.+.++...|+++++..|..
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 99999999999999999999999999999999999887654
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.7e-31 Score=226.49 Aligned_cols=108 Identities=43% Similarity=0.796 Sum_probs=102.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGN 87 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~ 87 (280)
..|++++|+||+|||++|+++|..||.++|..||..|++ |++.||++||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 468999999999999999999999998789999999998 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCHHHHHHHHHHhhhhHH
Q 040841 88 RWSLIAGRLPGRTDNEIKNYWNTHLSKRL 116 (280)
Q Consensus 88 ~W~~IA~~lpgRt~~qck~Rw~~~l~~~~ 116 (280)
+|+.||+.|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999887653
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.88 E-value=8.9e-24 Score=173.07 Aligned_cols=91 Identities=25% Similarity=0.518 Sum_probs=66.6
Q ss_pred cccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCC-ccccccccCCCCCHHHHHHHHHHhhhhHHhh
Q 040841 40 LPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGN-RWSLIAGRLPGRTDNEIKNYWNTHLSKRLRV 118 (280)
Q Consensus 40 IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~ 118 (280)
||+.|++ |++.||++||.++|+|.+++|+||+|||++|+++|.+||. +|..||..|||||..||++||+++|.+.++.
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7888998 9999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCCCccccccCCC
Q 040841 119 QGTDPNTHKKLSE 131 (280)
Q Consensus 119 ~~~~~~e~~~l~~ 131 (280)
+.|+++|+..|..
T Consensus 80 ~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 80 TSWTEEEDRIIYQ 92 (128)
T ss_dssp SCCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 9999999877664
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.9e-23 Score=152.83 Aligned_cols=67 Identities=24% Similarity=0.538 Sum_probs=64.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHH
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDED 75 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED 75 (280)
+.|.+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 568999999999999999999999998899999999998 9999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.75 E-value=9.1e-19 Score=156.40 Aligned_cols=106 Identities=15% Similarity=0.242 Sum_probs=91.6
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCccccchhhhhhhhhccCCCCC-----------------
Q 040841 9 KVGLQRGPWTPREDTLLTEYIQVHGEGH-----WRSLPKKAGLLRCGKSCRLRWMNYLRPDIK----------------- 66 (280)
Q Consensus 9 k~~lkkg~WT~EED~~L~~lV~~~G~~~-----W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ik----------------- 66 (280)
.+.++|++||+|||+.|+++|.+||..+ |..||+.|++ ||+.|||.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4678899999999999999999998743 9999999998 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 040841 67 ------------RGNITPDEDDLIIRLHSL-L--------------------------------GN-------------- 87 (280)
Q Consensus 67 ------------kg~WT~EED~~L~~lv~~-~--------------------------------G~-------------- 87 (280)
+..||.+||-.|+..+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 2 11
Q ss_pred -----------ccccccccCCCCCHHHHHHHHHHhhhhH
Q 040841 88 -----------RWSLIAGRLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 88 -----------~W~~IA~~lpgRt~~qck~Rw~~~l~~~ 115 (280)
.|..||+.+|+||.+++|+||..+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999877554
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.74 E-value=4.9e-19 Score=144.00 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=77.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----CccccchhhhhhhhhccC-----CCCCCC-CCCHHHHHHH
Q 040841 9 KVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKA----GLLRCGKSCRLRWMNYLR-----PDIKRG-NITPDEDDLI 78 (280)
Q Consensus 9 k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~----~~~Rt~~qCr~Rw~~~L~-----p~ikkg-~WT~EED~~L 78 (280)
++..++++||+|||+.|+++|++||.|+|..|+..+ ++ ||..||++||+++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 568899999999999999999999999999999985 55 999999999999998 999999 9999999999
Q ss_pred HHHHHHhCCcccc
Q 040841 79 IRLHSLLGNRWSL 91 (280)
Q Consensus 79 ~~lv~~~G~~W~~ 91 (280)
+.++..+||+|..
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.5e-18 Score=124.37 Aligned_cols=58 Identities=24% Similarity=0.484 Sum_probs=55.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCC
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIK 66 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ik 66 (280)
+.|++++++||+|||++|+++|.+||.++|..||..|++ ||+.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 458999999999999999999999998799999999998 9999999999999999875
No 13
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-18 Score=129.38 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=46.8
Q ss_pred hhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHh
Q 040841 54 RLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTH 111 (280)
Q Consensus 54 r~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~ 111 (280)
.-||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 99999999999864
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.72 E-value=2.4e-18 Score=119.87 Aligned_cols=52 Identities=42% Similarity=0.818 Sum_probs=49.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCC
Q 040841 12 LQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPD 64 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ 64 (280)
+++|+||+|||++|+++|.+||.++|..||..|++ ||++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 58999999999999999999999889999999998 99999999999999985
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.72 E-value=3.4e-18 Score=139.19 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=73.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Cccccchhhhhhhhhcc-----CCCCCCCCCCHHH-HHHH
Q 040841 9 KVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKA----GLLRCGKSCRLRWMNYL-----RPDIKRGNITPDE-DDLI 78 (280)
Q Consensus 9 k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~----~~~Rt~~qCr~Rw~~~L-----~p~ikkg~WT~EE-D~~L 78 (280)
+...++++||+|||+.|+++|++||.|+|..|+... .+ ||+.||++||+|++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456789999999999999999999999999999874 55 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 040841 79 IRLHSLLGNR 88 (280)
Q Consensus 79 ~~lv~~~G~~ 88 (280)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 16
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-18 Score=125.29 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CccccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCcccc
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTH 126 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~ 126 (280)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+++..|+++|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4778999999999999999999999 7999999999999999999999999999999999998876
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.70 E-value=3.8e-18 Score=118.77 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=48.6
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCC
Q 040841 12 LQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPD 64 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ 64 (280)
+++++||+|||++|+++|.+||.++|..||+.|++ ||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57999999999999999999999999999999998 99999999999999985
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=121.99 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=57.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhhhHHhhCCC
Q 040841 60 YLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGT 121 (280)
Q Consensus 60 ~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~ 121 (280)
+|+|.+++++||+|||++|++++.+||++|..||+ |+|||++||++||+.+|++.++...-
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 79999999999999999999999999999999999 88999999999999999999887643
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=5.7e-18 Score=124.67 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=58.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccchhhhhhhhhccCCCCCCCCCC
Q 040841 9 KVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAG--LLRCGKSCRLRWMNYLRPDIKRGNIT 71 (280)
Q Consensus 9 k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~--~~Rt~~qCr~Rw~~~L~p~ikkg~WT 71 (280)
++..++++||+|||++|+++|++||.++|..||..|+ + |++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5778999999999999999999999889999999999 7 999999999999999999988764
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.68 E-value=2.9e-17 Score=121.93 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=58.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccc
Q 040841 61 LRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNT 125 (280)
Q Consensus 61 L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e 125 (280)
.+|.+++++||+|||++|+++|.+||++|..||++|||||++|||+||+.++++..+. +.++.+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~ 66 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET 66 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence 5789999999999999999999999999999999999999999999999999888776 555543
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=5.6e-17 Score=116.35 Aligned_cols=56 Identities=20% Similarity=0.431 Sum_probs=52.4
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCC
Q 040841 9 KVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDI 65 (280)
Q Consensus 9 k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~i 65 (280)
.+.+.+++||+|||++|+++|+.||.++|..||+.|++ ||+.||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCCC
Confidence 47899999999999999999999998799999999998 999999999999998653
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=6.9e-17 Score=115.62 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CccccccccCCCCCHHHHHHHHHHhhhhHH
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLPGRTDNEIKNYWNTHLSKRL 116 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~ 116 (280)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 699999999999999999999999987754
No 23
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.65 E-value=3.6e-17 Score=119.08 Aligned_cols=55 Identities=24% Similarity=0.418 Sum_probs=49.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccchhhhhhhhhccCCCCC
Q 040841 11 GLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAG--LLRCGKSCRLRWMNYLRPDIK 66 (280)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~--~~Rt~~qCr~Rw~~~L~p~ik 66 (280)
..+|++||+|||++|+++|++||.++|..||+.++ + ||+.||++||+++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999999999999865 5 9999999999999988763
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=2.2e-16 Score=109.77 Aligned_cols=50 Identities=30% Similarity=0.563 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 65 IKRGNITPDEDDLIIRLHSLLGN-RWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 65 ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999999875
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=3.6e-16 Score=108.76 Aligned_cols=50 Identities=36% Similarity=0.711 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 65 IKRGNITPDEDDLIIRLHSLLGN-RWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 65 ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999998865
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.61 E-value=1.9e-16 Score=110.75 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=46.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCccccccccC--ccccchhhhhhhhhccC
Q 040841 13 QRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAG--LLRCGKSCRLRWMNYLR 62 (280)
Q Consensus 13 kkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~--~~Rt~~qCr~Rw~~~L~ 62 (280)
++++||+|||++|+++|+.||.++|..||..++ + ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 7 999999999999875
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=6.6e-16 Score=113.61 Aligned_cols=61 Identities=23% Similarity=0.200 Sum_probs=55.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CccccccccCC--CCCHHHHHHHHHHhhhhHHhhCC
Q 040841 60 YLRPDIKRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLP--GRTDNEIKNYWNTHLSKRLRVQG 120 (280)
Q Consensus 60 ~L~p~ikkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lp--gRt~~qck~Rw~~~l~~~~~~~~ 120 (280)
...+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++.+....
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 356778899999999999999999999 69999999999 99999999999999999876543
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-16 Score=118.62 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=57.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccCccccchhhhhhhhhccCCCCCCCCC
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGE-----GHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNI 70 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~-----~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~W 70 (280)
++|++++++||+|||++|+++|..||. .+|..||+.|++ ||..||+.||.++|.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999999996 689999999998 99999999999999987777643
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-16 Score=116.38 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=53.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCC
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRG 68 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg 68 (280)
..|.+++++||+|||++|+++|+.||. +|..||+ +++ ||+.||++||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 578999999999999999999999998 9999999 776 999999999999999877654
No 30
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.58 E-value=6.3e-16 Score=110.22 Aligned_cols=52 Identities=21% Similarity=0.436 Sum_probs=47.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhcc
Q 040841 10 VGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 (280)
Q Consensus 10 ~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L 61 (280)
..+.+++||+|||++|+++|++||.++|..||+.|+++||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4467899999999999999999998899999999993399999999999875
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.1e-15 Score=109.48 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999988753
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=1.6e-15 Score=105.96 Aligned_cols=49 Identities=27% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CccccccccCC--CCCHHHHHHHHHHhhhh
Q 040841 66 KRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLP--GRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 66 kkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lp--gRt~~qck~Rw~~~l~~ 114 (280)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998764
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.55 E-value=1.6e-15 Score=123.77 Aligned_cols=70 Identities=21% Similarity=0.458 Sum_probs=65.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccccccCCC
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTHKKLSE 131 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~~~l~~ 131 (280)
.+..++|.||+|||++|+++|.+||.+|..||..|+|||..||+.||.++|.+.++.+.|+++|+..|..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999987664
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=111.78 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CccccccccCCCCCHHHHHHHHHHhhhhHHhhC
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLG------NRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQ 119 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G------~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~ 119 (280)
+|.+.++.||+|||++|++++.+|| ++|..||.+|+|||..||++||+++|.+.++.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g 66 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG 66 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999999999999 789999999999999999999999998877654
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.54 E-value=1e-15 Score=113.50 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=54.7
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCC
Q 040841 7 CSKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKR 67 (280)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikk 67 (280)
++.|.+++++||+|||++|+++|..||. +|..||.+|++ ||..||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999999999999998 99999999998 99999999999998876655
No 36
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.54 E-value=1.9e-15 Score=119.17 Aligned_cols=68 Identities=26% Similarity=0.558 Sum_probs=63.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ccccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccccccCCC
Q 040841 64 DIKRGNITPDEDDLIIRLHSLLGN-RWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTHKKLSE 131 (280)
Q Consensus 64 ~ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~~~l~~ 131 (280)
++++|+||+|||++|+++|.+||. +|..||..|||||..||+.||.++|.+.++.+.|+++|+..|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 368999999999999999999996 79999999999999999999999999999999999999887764
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=5.8e-15 Score=107.38 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CccccccccCC--CCCHHHHHHHHHHhhhhHH
Q 040841 65 IKRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLP--GRTDNEIKNYWNTHLSKRL 116 (280)
Q Consensus 65 ikkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lp--gRt~~qck~Rw~~~l~~~~ 116 (280)
.++++||+|||++|+++|.+|| .+|..||+.++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999887654
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1e-14 Score=103.87 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=46.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CccccccccCC-CCCHHHHHHHHHHhh
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLG-NRWSLIAGRLP-GRTDNEIKNYWNTHL 112 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G-~~W~~IA~~lp-gRt~~qck~Rw~~~l 112 (280)
+..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999 89999999999 999999999998764
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=1.8e-15 Score=116.80 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=52.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhhhH
Q 040841 60 YLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 60 ~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~~ 115 (280)
.++|.+++++||+|||++|+++|.+||++|..||..|+|||++||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999887664
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.49 E-value=1.8e-14 Score=114.39 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=68.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----Cccccchhhhhhhhhcc-----CCCCCCCCCCHHHHHH-
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKA----GLLRCGKSCRLRWMNYL-----RPDIKRGNITPDEDDL- 77 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~----~~~Rt~~qCr~Rw~~~L-----~p~ikkg~WT~EED~~- 77 (280)
-++..++++||+|||+.|+++|++||.|+|..|+..+ ++ ||..+|++||++++ +|.+++|.-++.|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4577899999999999999999999999999999976 55 99999999999998 7999999888877665
Q ss_pred HHHHHHHhCC
Q 040841 78 IIRLHSLLGN 87 (280)
Q Consensus 78 L~~lv~~~G~ 87 (280)
+++|+..+|+
T Consensus 86 v~~~~~~~~~ 95 (105)
T 2aje_A 86 VLNAHGYWTQ 95 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.49 E-value=1.4e-14 Score=118.91 Aligned_cols=65 Identities=26% Similarity=0.476 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CccccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccccccCCC
Q 040841 67 RGNITPDEDDLIIRLHSLLG-NRWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTHKKLSE 131 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G-~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~~~l~~ 131 (280)
+|+||+|||++|+++|.+|| .+|..||..|||||..||+.||.++|.+.++.+.|+++|+..|..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 68999999999999999999 689999999999999999999999999999999999999887654
No 42
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.49 E-value=6.9e-15 Score=116.69 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ccccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccccccCCC
Q 040841 67 RGNITPDEDDLIIRLHSLLGN-RWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTHKKLSE 131 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G~-~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~~~l~~ 131 (280)
+|.||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.++.++|+++|+..|..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 579999999999999999995 89999999999999999999999999999999999999887654
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.47 E-value=3.8e-14 Score=108.15 Aligned_cols=69 Identities=25% Similarity=0.479 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCccccchhhhhhhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 040841 15 GPWTPREDTLLTEYIQVHGEGHWRSLPKK----AGLLRCGKSCRLRWMNYL-----RPDIKRG-NITPDEDDLIIRLHSL 84 (280)
Q Consensus 15 g~WT~EED~~L~~lV~~~G~~~W~~IA~~----~~~~Rt~~qCr~Rw~~~L-----~p~ikkg-~WT~EED~~L~~lv~~ 84 (280)
++||+|||+.|+++|++||.|+|..|++. +++ ||+.||++||+|++ +|.+++| +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 676 99999999999987 6877766 5677777888888765
No 44
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=106.61 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCC
Q 040841 6 CCSKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKR 67 (280)
Q Consensus 6 ~~~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikk 67 (280)
-...|++++|+||+|||++|+++|++||. +|..||+.| + ||..||+.||.. |......
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 34689999999999999999999999998 699999999 6 999999999985 5444443
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=7.4e-14 Score=105.58 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=49.5
Q ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhc
Q 040841 6 CCSKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNY 60 (280)
Q Consensus 6 ~~~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~ 60 (280)
.+.+....+++||+|||++|+++|++|| ++|..||++|++ ||..||+.||.++
T Consensus 10 ~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 10 AKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 4567788899999999999999999999 699999999998 9999999999998
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=2.4e-13 Score=101.31 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CccccccccCCCCCHHHHHHHHHHhhh
Q 040841 63 PDIKRGNITPDEDDLIIRLHSLLG----NRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 63 p~ikkg~WT~EED~~L~~lv~~~G----~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
+.+.+++||.+||.+|++++..|| ++|..||++|||||.+||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999998753
No 47
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.04 E-value=7.1e-14 Score=107.84 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=51.3
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCC
Q 040841 7 CSKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRP 63 (280)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p 63 (280)
...|++.+|+||+|||++|+++|..||. +|..||..|++ ||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 4568999999999999999999999998 89999999998 9999999999998853
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=3.4e-13 Score=101.93 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=44.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHh
Q 040841 64 DIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTH 111 (280)
Q Consensus 64 ~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~ 111 (280)
...+++||+|||.+|++++.+||++|..||++|+|||..||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999765
No 49
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.32 E-value=4.1e-13 Score=100.08 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=49.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccchhhhhhhhhccC
Q 040841 7 CSKVGLQRGPWTPREDTLLTEYIQVHGE---GHWRSLPKKAGLLRCGKSCRLRWMNYLR 62 (280)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~lV~~~G~---~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~ 62 (280)
-.++...+++||++||++|+++|+.||. .+|.+||..|++ ||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4577889999999999999999999993 489999999998 999999999998764
No 50
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.30 E-value=9.3e-13 Score=117.69 Aligned_cols=68 Identities=26% Similarity=0.418 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------cccccccCCCCCHHHHHHHHHHhhhhHHhhCCCCccccccCCC
Q 040841 63 PDIKRGNITPDEDDLIIRLHSLLGNR------WSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQGTDPNTHKKLSE 131 (280)
Q Consensus 63 p~ikkg~WT~EED~~L~~lv~~~G~~------W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~~~~~~e~~~l~~ 131 (280)
+.++++.||+|||++|+++|++||++ |..||+.|||||++|||+||+.+|++++... |...++..+..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~ 77 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVR 77 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhh
Confidence 35678999999999999999999975 9999999999999999999999999998744 77777666553
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.26 E-value=1.3e-12 Score=106.14 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=49.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-cccccccc----CCCCCHHHHHHHHHHhhhh
Q 040841 61 LRPDIKRGNITPDEDDLIIRLHSLLGN-RWSLIAGR----LPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 61 L~p~ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~----lpgRt~~qck~Rw~~~l~~ 114 (280)
+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 566788999999999999999999997 99999997 4999999999999999874
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.25 E-value=6.6e-12 Score=99.68 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-ccccccccC----CCCCHHHHHHHHHHhhhhH
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLGN-RWSLIAGRL----PGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~l----pgRt~~qck~Rw~~~l~~~ 115 (280)
.+..++++||+|||+.|+++|.+||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34668899999999999999999997 999999965 8999999999999987543
No 53
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.25 E-value=5.7e-12 Score=90.62 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcccccc---ccCCCCCHHHHHHHHHHhhhh
Q 040841 66 KRGNITPDEDDLIIRLHSLLGNRWSLIA---GRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 66 kkg~WT~EED~~L~~lv~~~G~~W~~IA---~~lpgRt~~qck~Rw~~~l~~ 114 (280)
.+.+||+|||+.|++.|++||.+|..|+ .++++||..++|+||+++++.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 688999999999999987653
No 54
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.25 E-value=4.7e-12 Score=96.55 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC-cccccccc----CCCCCHHHHHHHHHHhhhhH
Q 040841 68 GNITPDEDDLIIRLHSLLGN-RWSLIAGR----LPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 68 g~WT~EED~~L~~lv~~~G~-~W~~IA~~----lpgRt~~qck~Rw~~~l~~~ 115 (280)
++||+|||+.|+++|.+||. +|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999997 99999995 89999999999999988654
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.24 E-value=4.6e-12 Score=103.05 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=47.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-cccccccc----CCCCCHHHHHHHHHHhhhh
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLGN-RWSLIAGR----LPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G~-~W~~IA~~----lpgRt~~qck~Rw~~~l~~ 114 (280)
....++++||.|||+.|+++|++||. +|+.|++. |+|||..+||+||+++++.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34557899999999999999999996 99999986 4899999999999999853
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.16 E-value=2.1e-11 Score=94.76 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CccccccccCCCCCHHHHHHHHHHhhhhH
Q 040841 66 KRGNITPDEDDLIIRLHSLLG----NRWSLIAGRLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 66 kkg~WT~EED~~L~~lv~~~G----~~W~~IA~~lpgRt~~qck~Rw~~~l~~~ 115 (280)
.++.||.|||.+|++++..|| ++|..||..|||||.++|++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999987664
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.03 E-value=5e-11 Score=92.69 Aligned_cols=48 Identities=13% Similarity=0.385 Sum_probs=43.2
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccchhhhhhhhhcc
Q 040841 13 QRGPWTPREDTLLTEYIQVHGE---GHWRSLPKKAGLLRCGKSCRLRWMNYL 61 (280)
Q Consensus 13 kkg~WT~EED~~L~~lV~~~G~---~~W~~IA~~~~~~Rt~~qCr~Rw~~~L 61 (280)
.+++||+|||++|.+++..||. .+|..||..|++ ||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3678999999999999999983 479999999998 99999999999864
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=5.2e-10 Score=86.80 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=59.7
Q ss_pred chhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCccccccccC-----CCCCHHHHHHHHHHhhhhHHhhCC
Q 040841 50 GKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRL-----PGRTDNEIKNYWNTHLSKRLRVQG 120 (280)
Q Consensus 50 ~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~l-----pgRt~~qck~Rw~~~l~~~~~~~~ 120 (280)
..=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+.++ ++||..++|+||..+.++.+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34578999999976 79999999999999999999999999999 589999999999998887776653
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=78.39 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHh
Q 040841 66 KRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTH 111 (280)
Q Consensus 66 kkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~ 111 (280)
..++||+||+.++++++.+||.+|..||..|||||..+|..+|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999754
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.86 E-value=1.1e-09 Score=78.75 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=44.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccc---cccCccccchhhhhhhhhccC
Q 040841 12 LQRGPWTPREDTLLTEYIQVHGEGHWRSLP---KKAGLLRCGKSCRLRWMNYLR 62 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G~~~W~~IA---~~~~~~Rt~~qCr~Rw~~~L~ 62 (280)
-.+++||+|||+.|++.|++||. +|..|+ .++.+ ||...+.+||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 37899999999999999999998 999999 56666 999999999998654
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=1.7e-09 Score=80.16 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CccccccccCCCCCHHHHHHHHHHhhhhH
Q 040841 64 DIKRGNITPDEDDLIIRLHSLLG----NRWSLIAGRLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 64 ~ikkg~WT~EED~~L~~lv~~~G----~~W~~IA~~lpgRt~~qck~Rw~~~l~~~ 115 (280)
..+.+.||.||+++|.+++.+|+ ++|..||..| |||..+|++||+.+....
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence 45678999999999999999997 6799999998 999999999998876553
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=76.69 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=45.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhcc
Q 040841 8 SKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 (280)
Q Consensus 8 ~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L 61 (280)
.+..-..++||+||++++.+++..||. +|..||..|++ ||..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 344456789999999999999999996 99999999998 99999999997643
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=1.2e-08 Score=90.41 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 66 KRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 66 kkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
....||+||+.++++++.+||++|..||+.|++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999876543
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.59 E-value=1.5e-08 Score=75.02 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccchhhhhhhhhcc
Q 040841 10 VGLQRGPWTPREDTLLTEYIQVHGE---GHWRSLPKKAGLLRCGKSCRLRWMNYL 61 (280)
Q Consensus 10 ~~lkkg~WT~EED~~L~~lV~~~G~---~~W~~IA~~~~~~Rt~~qCr~Rw~~~L 61 (280)
....++.||.|||++|.+++..|+. .+|.+||+.+ + ||..||+.||....
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHH
Confidence 3456789999999999999999984 4699999998 4 99999999998754
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.59 E-value=1.6e-08 Score=72.18 Aligned_cols=48 Identities=23% Similarity=0.466 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCccccchhhhhhhhhccC
Q 040841 14 RGPWTPREDTLLTEYIQVH--------GEGHWRSLPK-KAGLLRCGKSCRLRWMNYLR 62 (280)
Q Consensus 14 kg~WT~EED~~L~~lV~~~--------G~~~W~~IA~-~~~~~Rt~~qCr~Rw~~~L~ 62 (280)
|.+||+|||..|+++|..| |..-|..+++ .++. +|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6789999999999999999 5556999999 7887 999999999999874
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.52 E-value=4.1e-08 Score=95.85 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHh
Q 040841 68 GNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTH 111 (280)
Q Consensus 68 g~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~ 111 (280)
..||.||-.++++++.+||.+|..||+.+++||..|||++|..+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999754
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=9.5e-08 Score=70.92 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CccccccccCCCCCHHHHHHHHHHhh
Q 040841 67 RGNITPDEDDLIIRLHSLLG----NRWSLIAGRLPGRTDNEIKNYWNTHL 112 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G----~~W~~IA~~lpgRt~~qck~Rw~~~l 112 (280)
...||.+|+.+|.+++..|+ .+|..||..|||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 46999999999999999999998763
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=4.6e-08 Score=72.63 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCccccchhhhhhhhhccC
Q 040841 14 RGPWTPREDTLLTEYIQVHGE---GHWRSLPKKAGLLRCGKSCRLRWMNYLR 62 (280)
Q Consensus 14 kg~WT~EED~~L~~lV~~~G~---~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~ 62 (280)
...||.+|+++|.+++..|+. ++|..||..+|+ ||..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 457999999999999999986 479999999999 999999999998754
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.37 E-value=1.8e-07 Score=83.00 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=46.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccC
Q 040841 10 VGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLR 62 (280)
Q Consensus 10 ~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~ 62 (280)
..-...+||.||++++++++.+||. +|..||+.+++ ||..||+.+|.++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3456789999999999999999997 99999999998 999999999998763
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.34 E-value=3.7e-07 Score=64.98 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-cccccc-cCCCCCHHHHHHHHHHhhh
Q 040841 67 RGNITPDEDDLIIRLHSLL--------GNR-WSLIAG-RLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~--------G~~-W~~IA~-~lpgRt~~qck~Rw~~~l~ 113 (280)
+.+||+|||..|+..|.+| |+. |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 8999999999999987653
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.10 E-value=9.8e-07 Score=65.25 Aligned_cols=44 Identities=11% Similarity=0.323 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CccccccccCccccchhhhhhhh
Q 040841 14 RGPWTPREDTLLTEYIQVHGEG---HWRSLPKKAGLLRCGKSCRLRWM 58 (280)
Q Consensus 14 kg~WT~EED~~L~~lV~~~G~~---~W~~IA~~~~~~Rt~~qCr~Rw~ 58 (280)
.+.||.+|+++|.+++..|+.+ .|.+||..||+ ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999875 79999999998 99999999985
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.09 E-value=8.1e-07 Score=65.71 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----ccccccccCCCCCHHHHHHHHH
Q 040841 67 RGNITPDEDDLIIRLHSLLGN----RWSLIAGRLPGRTDNEIKNYWN 109 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G~----~W~~IA~~lpgRt~~qck~Rw~ 109 (280)
.+.||.+|+++|.++...|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999983 7999999999999999999884
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.07 E-value=4e-06 Score=64.27 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHhCC---ccccccccCCCCCHHHHHHHHHHhhhhHHhhC
Q 040841 69 NITPDEDDLIIRLHSLLGN---RWSLIAGRLPGRTDNEIKNYWNTHLSKRLRVQ 119 (280)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~---~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~~~ 119 (280)
.||.|||..|+..+++-|. .|..||+.|.+|+.+||++||+.+++-.-...
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999995 89999999999999999999999887655443
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=4.3e-06 Score=60.05 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCccccccc-cCCCCCHHHHHHHHHH
Q 040841 62 RPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAG-RLPGRTDNEIKNYWNT 110 (280)
Q Consensus 62 ~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~-~lpgRt~~qck~Rw~~ 110 (280)
.|.++...||+||-.+..+.+.+||.+|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367778899999999999999999999999999 6899999999988853
No 75
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.02 E-value=6.5e-06 Score=76.23 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhh-------hhhhc---------------------------
Q 040841 15 GPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRL-------RWMNY--------------------------- 60 (280)
Q Consensus 15 g~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~-------Rw~~~--------------------------- 60 (280)
+.||..+...++.++.+||..+|..||..|++ ++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999987 77765532 22100
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHHHhCC----ccccccc------------cCCCCCHHHHHHHH
Q 040841 61 -------------L---RPDIKRGNITPDEDDLIIRLHSLLGN----RWSLIAG------------RLPGRTDNEIKNYW 108 (280)
Q Consensus 61 -------------L---~p~ikkg~WT~EED~~L~~lv~~~G~----~W~~IA~------------~lpgRt~~qck~Rw 108 (280)
| .+..+...||++||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 12234568999999999999999994 6999962 45789999999999
Q ss_pred HHhhhhHH
Q 040841 109 NTHLSKRL 116 (280)
Q Consensus 109 ~~~l~~~~ 116 (280)
+.+++-..
T Consensus 270 ~tLi~~ie 277 (304)
T 1ofc_X 270 NTLITLIE 277 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99886543
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.21 E-value=1e-06 Score=64.09 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---ccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 69 NITPDEDDLIIRLHSLLGN---RWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~---~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
.||.|||..|+..+++-|. .|..||..| +|+++||++||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999996 799999999 99999999999988754
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=6.2e-06 Score=59.21 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=46.1
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccchhhhhhhhh
Q 040841 7 CSKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPK-KAGLLRCGKSCRLRWMN 59 (280)
Q Consensus 7 ~~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~-~~~~~Rt~~qCr~Rw~~ 59 (280)
+..|.+....||+||-++..+++..||. +|..|++ .++. |+..||..-|..
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 3578899999999999999999999998 9999998 5887 999999888754
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.82 E-value=2.6e-05 Score=60.22 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=51.6
Q ss_pred hhhhhccCCCCCCCCCCHHHHHHHHHHHHHhCCccccccccCC-----CCCHHHHHHHHHHhhhhHHhhC
Q 040841 55 LRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLP-----GRTDNEIKNYWNTHLSKRLRVQ 119 (280)
Q Consensus 55 ~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lp-----gRt~~qck~Rw~~~l~~~~~~~ 119 (280)
+-|..+|. ...||.||...|+.|+++|+-+|..|+..+. +||-.++|.||..+.++.++..
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34556664 3689999999999999999999999998773 7999999999999887776654
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.55 E-value=8.2e-05 Score=54.45 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccccccc-cCCCCCHHHHHHHHH
Q 040841 67 RGNITPDEDDLIIRLHSLLGNRWSLIAG-RLPGRTDNEIKNYWN 109 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G~~W~~IA~-~lpgRt~~qck~Rw~ 109 (280)
...||+||-.+..+.+.+||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999999999999 589999999999886
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.55 E-value=7.4e-05 Score=57.77 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHH
Q 040841 67 RGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNT 110 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~ 110 (280)
...||+||.++..+.+..||.+|..||..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999999988854
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.54 E-value=3.9e-05 Score=74.97 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=44.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhcc
Q 040841 11 GLQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61 (280)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L 61 (280)
.....+||.+|-+++++++.+||. +|..||..+++ ||..||+..|.++-
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 345789999999999999999997 99999999998 99999999998753
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.48 E-value=4.8e-05 Score=58.80 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=42.8
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccchhhhhhhhhcc
Q 040841 12 LQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAG----LLRCGKSCRLRWMNYL 61 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~----~~Rt~~qCr~Rw~~~L 61 (280)
|...+||.||+..|++|+++|+. .|..|+..+. ..||..+.+.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998 9999999983 2399999999998753
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.28 E-value=0.00012 Score=56.61 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=40.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhh
Q 040841 14 RGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMN 59 (280)
Q Consensus 14 kg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~ 59 (280)
...||+||.++..++...||. +|..|++.++. |+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHhc
Confidence 467999999999999999997 99999999998 999999988754
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.25 E-value=0.00015 Score=52.98 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=40.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCccccchhhhhhhhh
Q 040841 13 QRGPWTPREDTLLTEYIQVHGEGHWRSLPK-KAGLLRCGKSCRLRWMN 59 (280)
Q Consensus 13 kkg~WT~EED~~L~~lV~~~G~~~W~~IA~-~~~~~Rt~~qCr~Rw~~ 59 (280)
....||+||-++..+++..||. +|..|++ .+++ |+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 4568999999999999999998 9999999 5888 999999988764
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.02 E-value=0.00025 Score=53.35 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CccccccccCC----CCCHHHHHHHHHHhhhhH
Q 040841 67 RGNITPDEDDLIIRLHSLLG----------NRWSLIAGRLP----GRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G----------~~W~~IA~~lp----gRt~~qck~Rw~~~l~~~ 115 (280)
...||.+|-..||+++..+. ..|..||..|. .||+.||+.+|.++.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999987642 14999999873 699999999999865543
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.97 E-value=0.00011 Score=55.34 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=39.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCccccccccC---ccccchhhhhhhhhc
Q 040841 13 QRGPWTPREDTLLTEYIQVHGE---------GHWRSLPKKAG---LLRCGKSCRLRWMNY 60 (280)
Q Consensus 13 kkg~WT~EED~~L~~lV~~~G~---------~~W~~IA~~~~---~~Rt~~qCr~Rw~~~ 60 (280)
+...||.+|...|+++...+.. ..|..||..|. -.||+.||+.+|.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678999999999999976421 15999999864 359999999999875
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.73 E-value=0.0023 Score=60.60 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhc----------------------------------
Q 040841 15 GPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNY---------------------------------- 60 (280)
Q Consensus 15 g~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~---------------------------------- 60 (280)
+.||..+=..++.++.+||..+-..||..|+++++...++ +|.++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999989999999997226665544 22211
Q ss_pred --------------cC---CCC--CCCCCCHHHHHHHHHHHHHhC----Cccccccc------------cCCCCCHHHHH
Q 040841 61 --------------LR---PDI--KRGNITPDEDDLIIRLHSLLG----NRWSLIAG------------RLPGRTDNEIK 105 (280)
Q Consensus 61 --------------L~---p~i--kkg~WT~EED~~L~~lv~~~G----~~W~~IA~------------~lpgRt~~qck 105 (280)
|. +.. +...||++||..|+-++.+|| +.|..|-. ++..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 10 111 345799999999999999999 46999943 24689999999
Q ss_pred HHHHHhhhhHHh
Q 040841 106 NYWNTHLSKRLR 117 (280)
Q Consensus 106 ~Rw~~~l~~~~~ 117 (280)
.|...+|+-..+
T Consensus 283 rRc~tLi~~IeK 294 (374)
T 2y9y_A 283 RRGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999998865443
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.68 E-value=0.0019 Score=49.50 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=42.0
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCC--CCccccccccCccccchhhhhhhhh
Q 040841 11 GLQRGPWTPREDTLLTEYIQVHGE--GHWRSLPKKAGLLRCGKSCRLRWMN 59 (280)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~~~G~--~~W~~IA~~~~~~Rt~~qCr~Rw~~ 59 (280)
|-+=-.||.|||..++...++.|. ..|..||+.+++ |+..|..+||+.
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 344457999999999999999876 379999999998 999999999976
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.51 E-value=0.0016 Score=56.26 Aligned_cols=32 Identities=6% Similarity=0.041 Sum_probs=26.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhC--CCCccccccc
Q 040841 12 LQRGPWTPREDTLLTEYIQVHG--EGHWRSLPKK 43 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G--~~~W~~IA~~ 43 (280)
-....||..|-..|++++.+|| .+.|..|+..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d 38 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD 38 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH
Confidence 3456899999999999999999 5689999764
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.35 E-value=0.00059 Score=49.59 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=41.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCC--CCccccccccCccccchhhhhhhhhcc
Q 040841 11 GLQRGPWTPREDTLLTEYIQVHGE--GHWRSLPKKAGLLRCGKSCRLRWMNYL 61 (280)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~~~G~--~~W~~IA~~~~~~Rt~~qCr~Rw~~~L 61 (280)
|-.=-.||.|||..++..+++.|. ..|..||..+ + |++.|..+||...+
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLM 61 (70)
Confidence 334457999999999999999886 3699999999 4 99999999998754
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.67 E-value=0.0085 Score=51.69 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=33.1
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040841 4 APCCSKVGLQRGPWTPREDTLLTEYIQVHGEGHWRSLPK 42 (280)
Q Consensus 4 ~~~~~k~~lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~ 42 (280)
-|++.++......||.+||..|+-.|.+||.|+|..|-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 466666666677899999999999999999999999854
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.11 E-value=0.011 Score=45.44 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=41.3
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCccccccccC----ccccchhhhhhhhhc
Q 040841 12 LQRGPWTPREDTLLTEYIQVHGEGHWRSLPKKAG----LLRCGKSCRLRWMNY 60 (280)
Q Consensus 12 lkkg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~----~~Rt~~qCr~Rw~~~ 60 (280)
++...||.||...|.+++.+|.- .|-.|+.... ..|+..+..+||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 44578999999999999999998 9999988764 249999999999875
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.66 E-value=0.044 Score=39.31 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---cccccccC--CCCCHHHHHHHHHHh
Q 040841 65 IKRGNITPDEDDLIIRLHSLLGNR---WSLIAGRL--PGRTDNEIKNYWNTH 111 (280)
Q Consensus 65 ikkg~WT~EED~~L~~lv~~~G~~---W~~IA~~l--pgRt~~qck~Rw~~~ 111 (280)
..+-.||+|.-++.++++.++|.. ++.|.+.| +|.|..+|+.|.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999954 77888876 799999999998765
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.45 E-value=0.1 Score=48.21 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 67 RGNITPDEDDLIIRLHSLLG-NRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G-~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
-+.||..+....+.++.+|| ++|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999 5899999999999999998877666543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.41 E-value=0.1 Score=47.37 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 040841 15 GPWTPREDTLLTEYIQVHGEGHWRSLPK 42 (280)
Q Consensus 15 g~WT~EED~~L~~lV~~~G~~~W~~IA~ 42 (280)
-.|+.+||..|+-.|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999943
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=86.19 E-value=0.65 Score=33.16 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=35.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC--ccccccccCc-cccchhhhhhhhh
Q 040841 11 GLQRGPWTPREDTLLTEYIQVHGEGH--WRSLPKKAGL-LRCGKSCRLRWMN 59 (280)
Q Consensus 11 ~lkkg~WT~EED~~L~~lV~~~G~~~--W~~IA~~~~~-~Rt~~qCr~Rw~~ 59 (280)
.-.+-.||+|..++.+++|...|... ++.|.+.|+. +.|..++.-+.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44577899999999999999999521 5677776653 1577776655443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.21 E-value=3.7 Score=37.07 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC---Cccccccc--cCCCCCHHHHHHHHHHhhhhH
Q 040841 67 RGNITPDEDDLIIRLHSLLG---NRWSLIAG--RLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G---~~W~~IA~--~lpgRt~~qck~Rw~~~l~~~ 115 (280)
++.||+.|-..|++.+.+|| .+|..|+. .|+.++...++.-+..++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999965 678999999999888766554
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=59.12 E-value=6.5 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 70 ITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 70 WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
++ +.+..++.++...|-.+..||..| |-+...|+.+....++
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 44 445556667667889999999999 9999999988776543
No 99
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=56.02 E-value=9.2 Score=32.06 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.6
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhCC
Q 040841 10 VGLQRGPWTPREDTLLT--------EYIQVHGE 34 (280)
Q Consensus 10 ~~lkkg~WT~EED~~L~--------~lV~~~G~ 34 (280)
|.-.+|-||+|+|+.|. +++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 45678889999999885 57778764
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=55.86 E-value=8 Score=26.79 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH----hCCccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 73 DEDDLIIRLHSL----LGNRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 73 EED~~L~~lv~~----~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
+.+..++.+.-. .|-.|.+||..| |-+...|+.+....+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344455556554 577899999999 99999999987766543
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=55.35 E-value=4 Score=32.40 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=33.1
Q ss_pred CccccccccCccccc----hhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHH
Q 040841 36 HWRSLPKKAGLLRCG----KSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHS 83 (280)
Q Consensus 36 ~W~~IA~~~~~~Rt~----~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~ 83 (280)
.|..||..++...+. ...+..|.++|.|-- ..+++|-..|.+-+.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 699999999764432 456888998887632 478889888876654
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.07 E-value=3.4 Score=32.31 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHHHhCC-------CCccccccccCccccchhhhhhhhhccCC
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRCGKSCRLRWMNYLRP 63 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p 63 (280)
+|-.+|.+.|. +.|..||..++. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 46677777764 379999999987 4478888888888865
No 103
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=53.74 E-value=52 Score=24.78 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccC------CCCCCCCCCHHHHHHHHHHHHHhC-C
Q 040841 15 GPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLR------PDIKRGNITPDEDDLIIRLHSLLG-N 87 (280)
Q Consensus 15 g~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~------p~ikkg~WT~EED~~L~~lv~~~G-~ 87 (280)
...|.++-..++.++. -|. .-..||..++ .+...+ .||.+... ........+++++..|+++ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 4578888888877774 454 6789999887 444333 33433211 1112235788888888877 3333 2
Q ss_pred ccccccccCCC--CCHHHHHHHH
Q 040841 88 RWSLIAGRLPG--RTDNEIKNYW 108 (280)
Q Consensus 88 ~W~~IA~~lpg--Rt~~qck~Rw 108 (280)
.-..|+..+ | -+...|....
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHH
Confidence 335677777 4 4555555433
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.32 E-value=6.1 Score=30.79 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHHHHHhC--------CccccccccCCCCCHHHHHHHHHHhhhhH
Q 040841 78 IIRLHSLLG--------NRWSLIAGRLPGRTDNEIKNYWNTHLSKR 115 (280)
Q Consensus 78 L~~lv~~~G--------~~W~~IA~~lpgRt~~qck~Rw~~~l~~~ 115 (280)
|..+|...| +.|..||..|.--....++..|..+|-+-
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 777788887 46999999884444789999999888664
No 105
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=53.00 E-value=17 Score=34.27 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CccccccccCC-CCCHHHHHHHHHHhh
Q 040841 68 GNITPDEDDLIIRLHSLLG-NRWSLIAGRLP-GRTDNEIKNYWNTHL 112 (280)
Q Consensus 68 g~WT~EED~~L~~lv~~~G-~~W~~IA~~lp-gRt~~qck~Rw~~~l 112 (280)
+.||.-+=..++.++.+|| ++-..||..|. |+|...|+.+.....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw 170 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFW 170 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4799999999999999999 56899999997 999999995554433
No 106
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=50.60 E-value=14 Score=28.12 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=28.5
Q ss_pred HHHHHHHHhC--------CccccccccCCCCC----HHHHHHHHHHhhhhH
Q 040841 77 LIIRLHSLLG--------NRWSLIAGRLPGRT----DNEIKNYWNTHLSKR 115 (280)
Q Consensus 77 ~L~~lv~~~G--------~~W~~IA~~lpgRt----~~qck~Rw~~~l~~~ 115 (280)
+|..+|.+.| +.|..||..|.--. ..++|..|..+|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 3666777777 46999999993322 468899998887664
No 107
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=49.93 E-value=13 Score=29.03 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.0
Q ss_pred HHHHHHHHhC--------CccccccccCCCCC----HHHHHHHHHHhhhhH
Q 040841 77 LIIRLHSLLG--------NRWSLIAGRLPGRT----DNEIKNYWNTHLSKR 115 (280)
Q Consensus 77 ~L~~lv~~~G--------~~W~~IA~~lpgRt----~~qck~Rw~~~l~~~ 115 (280)
+|..+|...| +.|..||..|.--. ..++|..|..+|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3777777777 46999999983222 568899999887764
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=49.71 E-value=8.7 Score=26.19 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHHH----HhCCccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 74 EDDLIIRLHS----LLGNRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 74 ED~~L~~lv~----~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
.+..++.+.- ..|-.+.+||..| |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444555554 3477899999999 99999999988766543
No 109
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=46.87 E-value=6 Score=30.26 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----chhhhhhhhhccCC
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRC----GKSCRLRWMNYLRP 63 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt----~~qCr~Rw~~~L~p 63 (280)
+|-.+|.+.|. +.|..||..++...+ +.+.+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46666776653 379999999986332 35678888888876
No 110
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.73 E-value=5.4 Score=31.20 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc---chhhhhhhhhccCC
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRC---GKSCRLRWMNYLRP 63 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt---~~qCr~Rw~~~L~p 63 (280)
+|-.+|.+.|. +.|..|+..++...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777764 379999999987332 45667778887754
No 111
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.17 E-value=24 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=25.3
Q ss_pred HHhCCccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 83 SLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 83 ~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
...|-...+||..| |-+...|+++....+++
T Consensus 148 ~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 148 FFGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34577899999999 99999999998776543
No 112
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=45.13 E-value=17 Score=28.57 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHhC--------CccccccccCCCCC----HHHHHHHHHHhhhhH
Q 040841 78 IIRLHSLLG--------NRWSLIAGRLPGRT----DNEIKNYWNTHLSKR 115 (280)
Q Consensus 78 L~~lv~~~G--------~~W~~IA~~lpgRt----~~qck~Rw~~~l~~~ 115 (280)
|..+|...| +.|..||..|.--+ ..++|..|..+|.+-
T Consensus 56 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 56 LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 667777777 46999999883222 468899999888775
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.88 E-value=17 Score=28.52 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=28.2
Q ss_pred HHHHHHHhC--------CccccccccCCCC--C--HHHHHHHHHHhhhhH
Q 040841 78 IIRLHSLLG--------NRWSLIAGRLPGR--T--DNEIKNYWNTHLSKR 115 (280)
Q Consensus 78 L~~lv~~~G--------~~W~~IA~~lpgR--t--~~qck~Rw~~~l~~~ 115 (280)
|..+|.+.| +.|..|+..|.-- + ...+|..|..+|.+-
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 667777777 4699999988322 1 368899999888774
No 114
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=42.53 E-value=20 Score=29.98 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=22.6
Q ss_pred hhhhhhhccC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 040841 53 CRLRWMNYLR-PDIKRGNITPDEDDLII--------RLHSLLG 86 (280)
Q Consensus 53 Cr~Rw~~~L~-p~ikkg~WT~EED~~L~--------~lv~~~G 86 (280)
.-+.|..-.. |.-..|-||.|+|+.|. +|.++||
T Consensus 99 VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 99 FLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 3344444443 55678999999999876 4555555
No 115
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=42.01 E-value=6.5 Score=31.14 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=28.2
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----chhhhhhhhhccCC
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRC----GKSCRLRWMNYLRP 63 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt----~~qCr~Rw~~~L~p 63 (280)
+|-.+|.++|. +.|..||..++...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667777764 379999999986432 35667778887755
No 116
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.36 E-value=8.5 Score=30.47 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=30.4
Q ss_pred HHHHHHHhC--------CccccccccCCCCCHHHHHHHHHHhhhhHHh
Q 040841 78 IIRLHSLLG--------NRWSLIAGRLPGRTDNEIKNYWNTHLSKRLR 117 (280)
Q Consensus 78 L~~lv~~~G--------~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~ 117 (280)
|..+|.+.| +.|..||..|.--....+|..|..+|-+--.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 666666666 2599999988444489999999998877543
No 117
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=41.36 E-value=17 Score=26.20 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 73 DEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 73 EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
+.+..++.++...|-.-..||..| |-+...|+.+....++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 344556666667788899999999 9999999998876543
No 118
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.04 E-value=25 Score=27.63 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred HHHHHHHHhC--------CccccccccCC--CC---CHHHHHHHHHHhhhhH
Q 040841 77 LIIRLHSLLG--------NRWSLIAGRLP--GR---TDNEIKNYWNTHLSKR 115 (280)
Q Consensus 77 ~L~~lv~~~G--------~~W~~IA~~lp--gR---t~~qck~Rw~~~l~~~ 115 (280)
+|..+|...| +.|..||..|. .. ...++|..|..+|.+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 4777777877 46999999882 22 2578899999988775
No 119
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=36.77 E-value=13 Score=29.16 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc---chhhhhhhhhccCC
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRC---GKSCRLRWMNYLRP 63 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt---~~qCr~Rw~~~L~p 63 (280)
+|-.+|.++|. +.|..||..++...+ +.+.+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667777664 379999999887432 34667777777643
No 120
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.55 E-value=8.8 Score=30.18 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=27.2
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc---chhhhhhhhhccCC
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRC---GKSCRLRWMNYLRP 63 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt---~~qCr~Rw~~~L~p 63 (280)
+|-.+|.+.|. +.|..|+..++...+ +.+.+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777764 379999999986332 24567777777643
No 121
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=36.53 E-value=23 Score=27.96 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=49.6
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHHHHHHhC-----
Q 040841 14 RGPWTPRED--TLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLG----- 86 (280)
Q Consensus 14 kg~WT~EED--~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~lv~~~G----- 86 (280)
+..|.+.+. +.|.+..+..|. ....++. +++ |. || =-+|..+|.+.|
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~-----------lD------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CE-----------LD------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EE-----------CC------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Ee-----------cc------------HHHHHHHHHHcCcHHHh
Confidence 456988765 456777777777 5555553 332 21 11 123677778887
Q ss_pred ---CccccccccC--CCC---CHHHHHHHHHHhhhhHH
Q 040841 87 ---NRWSLIAGRL--PGR---TDNEIKNYWNTHLSKRL 116 (280)
Q Consensus 87 ---~~W~~IA~~l--pgR---t~~qck~Rw~~~l~~~~ 116 (280)
+.|..||..| |.- ....+|.+|..+|-+--
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 4699999988 322 24688999988876654
No 122
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.95 E-value=11 Score=28.00 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=26.2
Q ss_pred HHHHHHHhC--------CccccccccCCCC----CHHHHHHHHHHhhhh
Q 040841 78 IIRLHSLLG--------NRWSLIAGRLPGR----TDNEIKNYWNTHLSK 114 (280)
Q Consensus 78 L~~lv~~~G--------~~W~~IA~~lpgR----t~~qck~Rw~~~l~~ 114 (280)
|..+|.+.| +.|..|+..|.-- ...++|..|..+|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 667777776 4699999988321 256888888877654
No 123
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=35.56 E-value=12 Score=30.32 Aligned_cols=53 Identities=30% Similarity=0.479 Sum_probs=33.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCcccc----chhhhhhhhhccCC--CCCCCCCCHHHHH
Q 040841 24 LLTEYIQVHGE-------GHWRSLPKKAGLLRC----GKSCRLRWMNYLRP--DIKRGNITPDEDD 76 (280)
Q Consensus 24 ~L~~lV~~~G~-------~~W~~IA~~~~~~Rt----~~qCr~Rw~~~L~p--~ikkg~WT~EED~ 76 (280)
+|-.+|.+.|. +.|..|+..++...+ +.+.+..|.++|.| ...+|.=.++|-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~ 133 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQ 133 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 45666666664 369999999986332 35678888888876 2234444444433
No 124
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.31 E-value=29 Score=28.02 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=29.2
Q ss_pred HHHHHHHHhC--------CccccccccCC--CC---CHHHHHHHHHHhhhhH
Q 040841 77 LIIRLHSLLG--------NRWSLIAGRLP--GR---TDNEIKNYWNTHLSKR 115 (280)
Q Consensus 77 ~L~~lv~~~G--------~~W~~IA~~lp--gR---t~~qck~Rw~~~l~~~ 115 (280)
+|..+|.+.| +.|..||..|. .. ....+|..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 3667777777 46999999882 22 2568999999988775
No 125
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=33.49 E-value=32 Score=26.19 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHH
Q 040841 70 ITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKN 106 (280)
Q Consensus 70 WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~ 106 (280)
=+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 366677788888899999999999999 888776654
No 126
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.29 E-value=29 Score=24.84 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHHHHH----hCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 74 EDDLIIRLHSL----LGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 74 ED~~L~~lv~~----~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
.+..++.+.-. .|-.+..||..| |-+...|+.+-...++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 34445555554 567899999999 9999999998776543
No 127
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=33.20 E-value=27 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=17.0
Q ss_pred HHHHHHccCC-chhhhhhHHHhh
Q 040841 257 EYLQILKNDD-EQLQLDCFAESL 278 (280)
Q Consensus 257 ~~~q~~~~~~-~~~~~~~~~~~~ 278 (280)
.++|+|+|++ .--|-+-|+.||
T Consensus 13 aFYevLh~~nLtEeQrn~yI~sl 35 (38)
T 1zda_A 13 RFYEALHDPNLNEEQRNAKIKSI 35 (38)
T ss_dssp HHHHHHSCSSSCTTHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHhHHHHh
Confidence 3689999988 334788888887
No 128
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=33.10 E-value=24 Score=21.83 Aligned_cols=22 Identities=14% Similarity=0.302 Sum_probs=16.8
Q ss_pred HHHHHHccCC-chhhhhhHHHhh
Q 040841 257 EYLQILKNDD-EQLQLDCFAESL 278 (280)
Q Consensus 257 ~~~q~~~~~~-~~~~~~~~~~~~ 278 (280)
.++|+|++++ .--|-+-|+.||
T Consensus 8 aFYevLh~~nLtEeQrn~yI~sl 30 (34)
T 1l6x_B 8 RFYEALHDPNLNEEQRNAKIKSI 30 (34)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHhHHHHH
Confidence 3689999988 334788888876
No 129
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.23 E-value=36 Score=27.07 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=24.4
Q ss_pred HhCCccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 84 LLGNRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 84 ~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
..|-...+||..| |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999988765443
No 130
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.23 E-value=47 Score=22.66 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhh
Q 040841 70 ITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHL 112 (280)
Q Consensus 70 WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l 112 (280)
+|+.|-+ ++.++ ..|-.-..||..| |-+...|+.+....+
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4555544 44555 6678899999999 889999998877654
No 131
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=30.15 E-value=1.2e+02 Score=23.30 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhc------cCCCCC----CCCCCHHHHHHHHHHHH
Q 040841 14 RGPWTPREDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNY------LRPDIK----RGNITPDEDDLIIRLHS 83 (280)
Q Consensus 14 kg~WT~EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~------L~p~ik----kg~WT~EED~~L~~lv~ 83 (280)
....|.++-..++.++. .|. ....||..++- +... ..||.+. +.+... ....+++..+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s~~T-V~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--SHGC-VSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHH-HHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHH-HHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 35689888888888874 454 67899998874 3333 3334321 333222 23478888888888887
Q ss_pred Hh
Q 040841 84 LL 85 (280)
Q Consensus 84 ~~ 85 (280)
+.
T Consensus 105 ~~ 106 (149)
T 1k78_A 105 QN 106 (149)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 132
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.84 E-value=45 Score=22.46 Aligned_cols=35 Identities=11% Similarity=-0.079 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHH
Q 040841 73 DEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYW 108 (280)
Q Consensus 73 EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw 108 (280)
-|.+.|.++...+|++++..|+.| |=+...+..+-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 477788899999999999999998 66666555443
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.62 E-value=51 Score=23.98 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 69 NITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 46777766554 45 7788889999999 9999999998876543
No 134
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=27.37 E-value=64 Score=23.36 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHH
Q 040841 73 DEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYW 108 (280)
Q Consensus 73 EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw 108 (280)
-|...|.+++..+|++.+..|+.| |=+...+..+-
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 477788899999999999999999 77777776554
No 135
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.15 E-value=63 Score=23.44 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhhh
Q 040841 67 RGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSK 114 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~~ 114 (280)
....|+.|-+.|.-++ .|..-..||..| |-+...|+.+....+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467888877665444 788899999999 99999999998776443
No 136
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.11 E-value=32 Score=26.57 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCCccccccccCCCCCHHHHHH
Q 040841 75 DDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKN 106 (280)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~ 106 (280)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 3457777899999999999999 777776644
No 137
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.06 E-value=51 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 74 EDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 74 ED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
.+..++.++...|-....||..| |-+...|+.+.+..++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~ 67 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGD 67 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34456666667788999999999 9999999988776543
No 138
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.62 E-value=53 Score=24.88 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCccccccccCCCCCHHHHHH
Q 040841 75 DDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKN 106 (280)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~ 106 (280)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 3445566788899999999999 777777754
No 139
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.48 E-value=38 Score=26.22 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHH
Q 040841 63 PDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKN 106 (280)
Q Consensus 63 p~ikkg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~ 106 (280)
+.+-...=|.+ .|..+....|..|..+|+.| |=+..+|..
T Consensus 15 ~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 15 SHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp -CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred chhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 33444445555 45566788999999999999 777776654
No 140
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=26.13 E-value=39 Score=26.18 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHH
Q 040841 67 RGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKN 106 (280)
Q Consensus 67 kg~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~ 106 (280)
...=|.+ .|..+....|..|..+|+.| |=+..+|..
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3344555 45566788999999999999 777776654
No 141
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.94 E-value=50 Score=23.29 Aligned_cols=41 Identities=32% Similarity=0.376 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhh
Q 040841 69 NITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHL 112 (280)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l 112 (280)
..|+.|-+.|. ++ ..|-.-.+||+.| |-+...|+.+....+
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 46776665544 44 6788899999999 899999998877654
No 142
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=25.82 E-value=36 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=26.8
Q ss_pred cccccccCccccchhhhhhhhhccCCCCCCCCCCHHHHHHHHH
Q 040841 38 RSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIR 80 (280)
Q Consensus 38 ~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ikkg~WT~EED~~L~~ 80 (280)
+.||..+.| +|..+||.-+. + ...+|+||++.|.+
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 467888887 99999999762 2 33699999988764
No 143
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=25.63 E-value=53 Score=21.91 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhh
Q 040841 68 GNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHL 112 (280)
Q Consensus 68 g~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l 112 (280)
..+|+.|-+.|.. + ..|..-.+||..| |-+...|+.+....+
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3577777765544 4 5677899999999 889999998887654
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.08 E-value=65 Score=20.74 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 75 DDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
+..++.+ -..|-.-.+||..| |-+...|+.+....++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3445555 35687889999999 8999999998876543
No 145
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=24.94 E-value=21 Score=28.67 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCccccccccCccccchhhhhhhhhccCCC
Q 040841 20 REDTLLTEYIQVHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPD 64 (280)
Q Consensus 20 EED~~L~~lV~~~G~~~W~~IA~~~~~~Rt~~qCr~Rw~~~L~p~ 64 (280)
+-|.+|+++++..|.-.|..||+.++ =+...|+.|+.+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999998889999999998 67788888877654333
No 146
>2nml_A Enhancer of rudimentary homolog; HEF2/ERH fold, pseudo beta barrel, interaction network, transcription, cell cycle; 1.55A {Homo sapiens} SCOP: d.330.1.1 PDB: 1w9g_A 1wwq_A 1wz7_A
Probab=24.10 E-value=51 Score=25.45 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHccCC-----chhhhhhHHHhhc
Q 040841 249 NSLEKLYEEYLQILKNDD-----EQLQLDCFAESLL 279 (280)
Q Consensus 249 ~~~~~~~~~~~q~~~~~~-----~~~~~~~~~~~~~ 279 (280)
+.+=++|||++.-+|..- |-.||=.|+|+|-
T Consensus 30 egiC~iYE~~LK~~nP~~~~ItYdI~~Lf~fID~l~ 65 (104)
T 2nml_A 30 EGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLA 65 (104)
T ss_dssp HHHHHHHHHHHHHHSTTCSSCCCCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhccc
Confidence 345578999888776553 6688999999873
No 147
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.92 E-value=34 Score=27.36 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhC-CccccccccCCCCCHHHHHHHHHHhhhhHHh
Q 040841 73 DEDDLIIRLHSLLG-NRWSLIAGRLPGRTDNEIKNYWNTHLSKRLR 117 (280)
Q Consensus 73 EED~~L~~lv~~~G-~~W~~IA~~lpgRt~~qck~Rw~~~l~~~~~ 117 (280)
+-|.+|+++.++.| -.|..||+.+ |-+...|+.|++.+....+.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45778888888777 4799999999 99999999999887666553
No 148
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.32 E-value=58 Score=26.59 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 76 DLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 76 ~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
..++.++...|-...+||..| |-+...|+.+....++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 334444444577899999999 9999999988876543
No 149
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=23.22 E-value=45 Score=22.87 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHHHHccCC
Q 040841 247 GENSLEKLYEEYLQILKNDD 266 (280)
Q Consensus 247 ~~~~~~~~~~~~~q~~~~~~ 266 (280)
+-..+-.+||+|+++++.+.
T Consensus 9 CGkvi~~~we~y~~~~~~~~ 28 (55)
T 1ef4_A 9 CGKPVSAYFNEYQRRVADGE 28 (55)
T ss_dssp TTSCCHHHHHHHHHHHHHTC
T ss_pred CCCChhHHHHHHHHHHHcCC
Confidence 34456789999999997644
No 150
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.92 E-value=50 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=23.4
Q ss_pred HhCCccccccccCCCCCHHHHHHHHHHhhh
Q 040841 84 LLGNRWSLIAGRLPGRTDNEIKNYWNTHLS 113 (280)
Q Consensus 84 ~~G~~W~~IA~~lpgRt~~qck~Rw~~~l~ 113 (280)
..|-....||..| |-+...|+.+....++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3467899999999 8999999988876543
No 151
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.71 E-value=1e+02 Score=18.07 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHH
Q 040841 69 NITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYW 108 (280)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw 108 (280)
..++++-..++.++ .-|.....||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45677766677665 4577889999999 88888887644
No 152
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.43 E-value=61 Score=23.11 Aligned_cols=41 Identities=22% Similarity=0.093 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHhCCccccccccCCCCCHHHHHHHHHHhh
Q 040841 69 NITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHL 112 (280)
Q Consensus 69 ~WT~EED~~L~~lv~~~G~~W~~IA~~lpgRt~~qck~Rw~~~l 112 (280)
..|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+....+
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNIL 69 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3566666555 444 5788899999999 999999999887654
No 153
>1dee_G Immunoglobulin G binding protein A; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Staphylococcus aureus} SCOP: a.8.1.1
Probab=22.11 E-value=47 Score=22.62 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=15.2
Q ss_pred HHHHHccCC-chhhhhhHHHhh
Q 040841 258 YLQILKNDD-EQLQLDCFAESL 278 (280)
Q Consensus 258 ~~q~~~~~~-~~~~~~~~~~~~ 278 (280)
++|||+|.. .-.|-+-|..||
T Consensus 9 FYeil~lp~lte~qrng~i~sl 30 (54)
T 1dee_G 9 FYEILNMPNLNEAQRNGFIQSL 30 (54)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCcchhhhccccccc
Confidence 788998887 334667777766
No 154
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=20.23 E-value=38 Score=24.24 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=15.8
Q ss_pred HHHHHccCC-chhhhhhHHHhh
Q 040841 258 YLQILKNDD-EQLQLDCFAESL 278 (280)
Q Consensus 258 ~~q~~~~~~-~~~~~~~~~~~~ 278 (280)
|+|||+|++ .-.|-+-|+.||
T Consensus 25 FYeiL~~pnLtEeQrngfI~sl 46 (70)
T 2kzi_A 25 YWEIALLPNLNNQQKRAFIRSL 46 (70)
T ss_dssp SHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHcCCCcchhhhhcccccc
Confidence 789999988 334677787776
Done!