BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040842
         (394 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1C72|A Chain A, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
 pdb|1C72|B Chain B, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
 pdb|1C72|C Chain C, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
 pdb|1C72|D Chain D, Tyr115, Gln165 And Trp209 Contribute To The
           1,2-Epoxy-3-(P- Nitrophenoxy)propane Conjugating
           Activities Of Glutathione S-Transferase Cgstm1-1
          Length = 219

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 194 KFNQSLTSLAFQFFRNMIPGDRTIHRERFSLDGNHLLDL----IRHCFLPTIPRVKPS 247
           K  QS   L +   ++ + G+  + ++R  +  NHL+DL     R C+ P   ++KP+
Sbjct: 68  KLTQSNAILRYIARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPA 125


>pdb|1GSU|A Chain A, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
           1.94 Angstrom Resolution
 pdb|1GSU|B Chain B, An Avian Class-Mu Glutathione S-Transferase, Cgstm1-1 At
           1.94 Angstrom Resolution
          Length = 219

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 194 KFNQSLTSLAFQFFRNMIPGDRTIHRERFSLDGNHLLDL----IRHCFLPTIPRVKPS 247
           K  QS   L +   ++ + G+  + ++R  +  NHL+DL     R C+ P   ++KP+
Sbjct: 68  KLTQSNAILRYIARKHNMCGETEVEKQRVDVLENHLMDLRMAFARLCYSPDFEKLKPA 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,971,259
Number of Sequences: 62578
Number of extensions: 439728
Number of successful extensions: 1130
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 8
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)