BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040842
(394 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 202/407 (49%), Gaps = 38/407 (9%)
Query: 16 PAKANEALVSSIKEKMERIVSA----LCIDRAGVAVPQEHKDFYIPDKVSIGPLHYGEGP 71
P+ L S KE + + SA CI R + + Y P VSIGP HYGE
Sbjct: 20 PSAFRNYLSSGSKEPVLLLESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKH 79
Query: 72 LKAMEEHKWRYLYALLN--RKPDIEASLDACVKALKGLEHKARLCYVENINISSDEFVKM 129
L+ +++HK R L L+ +K D+E + VKA+ LE K R Y E + D + M
Sbjct: 80 LQMIQQHKPRLLQLFLDEAKKKDVEE--NVLVKAVVDLEDKIRKSYSEELKTGHD-LMFM 136
Query: 130 MLLDGGFIIELFLRHAVKVLRRRNDPLFSSPGSLSDLRRDMMLLENQIPFFILQRLFEIV 189
M+LDG FI+ +FL + + DP+FS P LS ++ D++LLENQ+PFF+LQ L+ V
Sbjct: 137 MVLDGCFILMVFLIMSGNI-ELSEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLY--V 193
Query: 190 PLPEKFNQSLTSLAFQFFRNMIPGDRTIHRERFSLDGNHLLDLIRHCFLPTI-------- 241
+ L +AF FF+N I + + + + HLLDLIR FLP
Sbjct: 194 GSKIGVSSDLNRIAFHFFKNPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASS 253
Query: 242 PRVK-----------PS-EANATQRLESAKMLKEAGV--LIKKSKTENLLDIKFAHGVLE 287
P V+ PS ++ A + SAK L+ G+ +++SK +++L+++ L+
Sbjct: 254 PHVQVQLHEGKSGNVPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQ 313
Query: 288 IPPIRVHQHTESLLRNLIAFEQCPCDNTQHISSYVILMKSLIPTRKDAKSLKRRQILI-N 346
IP +R S N +AFEQ D++ I++Y++ M L+ +D L+ +++I N
Sbjct: 314 IPQLRFDGFISSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIEN 373
Query: 347 YDVDENDGSRLFDRLSKGV---NEGDLKDFCFDGLCEQVMKYKKTGW 390
+ N+ S F +SK V + + F G+ E K+ W
Sbjct: 374 HFGSNNEVSEFFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLW 420
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 51 HKDFYIPDKVSIGPLHYGEGPLKAMEEHKWRYLYALLNRKPDIEASLDACVKALKGLEHK 110
H D Y P +VSIGP H + L ME +K + N+ V+ L+ +E K
Sbjct: 56 HPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFR--FHDLVEKLQSMEIK 113
Query: 111 ARLCYVENINISSDEFVKMMLLDGGFIIELFLRHAVKVLRRRNDPLFSSPGSLSDLRRDM 170
R CY + I + + + +M +D F+IE ++ R+ + L + G +++ RD+
Sbjct: 114 IRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSF----RKVETLINRVGH-NEILRDI 168
Query: 171 MLLENQIPFFILQRLFEI-VPLPEKFNQSLTSLAFQFFRNMIP-----GDRTIHRERFSL 224
M++ENQIP F+L++ E + E + L S+ +++ P D I + +F
Sbjct: 169 MMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKDLSPLVIKFDDDQILKAQFQ- 227
Query: 225 DGNHLLDLIRHCFLPTI 241
+ NH+LD + +P I
Sbjct: 228 ECNHILDFLYQMIVPRI 244
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 257 SAKMLKEAGVLIKKSKTENLLDIKF--AHGVLEIPPIRVHQHTESLLRNLIAFEQCPCDN 314
S L +AGV K + N+ + F G +P I + +TE++LRNL+A+E
Sbjct: 347 SVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNTSG 406
Query: 315 TQHISSYVILMKSLIPTRKDAKSLKRRQILINYDVDENDGSRLFDRLSKGVNEGDLKDFC 374
+ Y L+ +I + +D + L+ + +L++ + + + +++ +SK V L
Sbjct: 407 PLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVR---LTKVG 463
Query: 375 F-DGLCEQVMKYKKTGWR 391
F D E V +Y W+
Sbjct: 464 FLDKTIEDVNRYYTGRWK 481
>sp|P17442|PHO81_YEAST Phosphate system positive regulatory protein PHO81 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHO81 PE=1
SV=2
Length = 1178
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 49 QEH-KDFYIPDKVSIGPLHYGEGPLKAMEEHKWRYLYALL--------NRKPDIEAS 96
Q H KDFY+ VSI P+ +GPLK +E L+ LL NR+ DI++S
Sbjct: 160 QSHDKDFYLATVVSIQPIFTRDGPLKLNDET----LHILLELNDIDNNNRRADIQSS 212
>sp|B0VXM6|ACDH_GEOSE Acetaldehyde dehydrogenase OS=Geobacillus stearothermophilus
GN=pheF PE=3 SV=1
Length = 294
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 250 NATQRLESAKMLKEAGVLIKKSKTENLLDIK-FAHGVLEIPPIRVHQHTESLLRNLI 305
+A + AK+LKEAG + +LD+ A G L +PP+ +H+H + NLI
Sbjct: 76 SAKAHIRHAKLLKEAG--------KTVLDLTPAAVGALVVPPVNLHKHLDEWNVNLI 124
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,113,036
Number of Sequences: 539616
Number of extensions: 5755197
Number of successful extensions: 13394
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13382
Number of HSP's gapped (non-prelim): 9
length of query: 394
length of database: 191,569,459
effective HSP length: 119
effective length of query: 275
effective length of database: 127,355,155
effective search space: 35022667625
effective search space used: 35022667625
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)