Query 040842
Match_columns 394
No_of_seqs 125 out of 681
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 20:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kru_A Light-independent proto 16.3 39 0.0013 24.3 0.6 14 175-188 15-28 (63)
2 2l09_A ASR4154 protein; proto- 11.1 41 0.0014 24.2 -0.6 14 175-188 14-27 (62)
3 2l27_B Peptide agonist; CRF, E 9.5 71 0.0024 20.4 0.2 20 289-309 1-20 (38)
4 2x4i_A CAG38848, uncharacteriz 9.1 2.9E+02 0.0099 22.1 3.7 33 331-364 28-60 (114)
5 3mc1_A Predicted phosphatase, 8.8 2.9E+02 0.01 22.8 4.0 56 330-393 167-225 (226)
6 2j6b_A AFV3-109; sulfolobus, c 8.7 2.4E+02 0.0081 22.4 3.0 33 331-364 26-58 (109)
7 2i15_A A05_ORF129, hypothetica 8.6 2.4E+02 0.0081 22.1 2.9 26 114-139 47-72 (135)
8 3drx_A BTB/POZ domain-containi 8.6 1.7E+02 0.0057 25.9 2.3 50 21-70 100-164 (202)
9 3f2b_A DNA-directed DNA polyme 7.9 7.9E+02 0.027 27.1 7.7 95 258-359 935-1031(1041)
10 1pve_A HHR23B, UV excision rep 6.8 5.6E+02 0.019 18.6 4.1 42 82-130 17-58 (72)
No 1
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=16.29 E-value=39 Score=24.30 Aligned_cols=14 Identities=21% Similarity=0.683 Sum_probs=10.5
Q ss_pred ccchHHHHHHHHhh
Q 040842 175 NQIPFFILQRLFEI 188 (394)
Q Consensus 175 NQiPffVL~~L~~~ 188 (394)
++|||||=.++=.-
T Consensus 15 kkIP~FVR~kvrr~ 28 (63)
T 2kru_A 15 GKVPFFVRKKVRKN 28 (63)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 56999998776554
No 2
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=11.08 E-value=41 Score=24.15 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=10.3
Q ss_pred ccchHHHHHHHHhh
Q 040842 175 NQIPFFILQRLFEI 188 (394)
Q Consensus 175 NQiPffVL~~L~~~ 188 (394)
++|||||=.++=.-
T Consensus 14 kkIP~FVR~kvrr~ 27 (62)
T 2l09_A 14 KNIPFFARSQAKAR 27 (62)
T ss_dssp HTSCGGGHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 46999997766544
No 3
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=9.48 E-value=71 Score=20.43 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=13.7
Q ss_pred CcEEEecChhHHHHHHHHHHh
Q 040842 289 PPIRVHQHTESLLRNLIAFEQ 309 (394)
Q Consensus 289 P~l~id~~T~~llrNLiA~Eq 309 (394)
||+.+ |-|--+|||++-...
T Consensus 1 PPiSl-DLTFhlLR~m~emar 20 (38)
T 2l27_B 1 PPISL-DLTFNLLREVLEIAK 20 (38)
T ss_dssp CCCCS-HHHHHHHHHHHHHHH
T ss_pred CCcch-hHHHHHHHHHHHHHH
Confidence 45544 357889999986543
No 4
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=9.06 E-value=2.9e+02 Score=22.11 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=26.5
Q ss_pred ChhhHHHHHHCCceeccCCCChhHHHHHHhhhcC
Q 040842 331 TRKDAKSLKRRQILINYDVDENDGSRLFDRLSKG 364 (394)
Q Consensus 331 t~~DV~lL~~~gIi~~~~lg~de~a~lfn~L~~~ 364 (394)
|.++++.+..++-+++. .|.+..|++.+.||.-
T Consensus 28 s~~EAk~~v~~~~~iSa-IGH~sTA~lls~Llg~ 60 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINS-IGHDSTIQLINSLCGT 60 (114)
T ss_dssp CHHHHHHHHCCTTEEEC-CCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcccCeEEe-eccHHHHHHHHHHhCC
Confidence 36778888877778888 8887669999999963
No 5
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=8.78 E-value=2.9e+02 Score=22.75 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=30.3
Q ss_pred CChhhHHHHHHCCc---eeccCCCChhHHHHHHhhhcCCccCCCCCccHHHHHHHHHhhhccCCcCC
Q 040842 330 PTRKDAKSLKRRQI---LINYDVDENDGSRLFDRLSKGVNEGDLKDFCFDGLCEQVMKYKKTGWRRV 393 (394)
Q Consensus 330 ~t~~DV~lL~~~gI---i~~~~lg~de~a~lfn~L~~~~~~~~~~~~~~~~v~~~ln~~~~~rw~~w 393 (394)
|+..|++-++..|+ .+++ |......+-...+..+. .-+.++.+-+....+++|++.
T Consensus 167 D~~~Di~~a~~aG~~~i~v~~--g~~~~~~~~~~~ad~v~------~s~~el~~~~~~~~~~~~~~~ 225 (226)
T 3mc1_A 167 DREYDVIGALKNNLPSIGVTY--GFGSYEELKNAGANYIV------NSVDELHKKILELREGHHHHH 225 (226)
T ss_dssp SSHHHHHHHHTTTCCEEEESS--SSSCHHHHHHHTCSEEE------SSHHHHHHHHHTC--------
T ss_pred CCHHHHHHHHHCCCCEEEEcc--CCCCHHHHHHcCCCEEE------CCHHHHHHHHHHHhccccccC
Confidence 78899999999999 6664 33222222222232222 347788888888898888763
No 6
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=8.70 E-value=2.4e+02 Score=22.43 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.4
Q ss_pred ChhhHHHHHHCCceeccCCCChhHHHHHHhhhcC
Q 040842 331 TRKDAKSLKRRQILINYDVDENDGSRLFDRLSKG 364 (394)
Q Consensus 331 t~~DV~lL~~~gIi~~~~lg~de~a~lfn~L~~~ 364 (394)
|.++++.+..++-+++. .|.+..|++.++||.-
T Consensus 26 s~~Ea~~~l~~~~~vSa-IGH~sTA~lls~Llg~ 58 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSA-IGHQATAELLSSILGV 58 (109)
T ss_dssp CHHHHHHHHHHSCEEEC-BCSHHHHHHHHHHHTS
T ss_pred CHHHHHHHhcccceEEe-eccHHHHHHHHHHhCC
Confidence 56788888777777788 8887669999999963
No 7
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=8.64 E-value=2.4e+02 Score=22.15 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=18.5
Q ss_pred hcccCCCCChHHHHHHHHHHHHHHHH
Q 040842 114 CYVENINISSDEFVKMMLLDGGFIIE 139 (394)
Q Consensus 114 ~Y~~~~~~~~~ef~~MmllDGCFiLe 139 (394)
-|.++.--+..-|.+=||-||.||-.
T Consensus 47 iyedddyddq~ff~kpmlsd~ffi~s 72 (135)
T 2i15_A 47 IYEDDDYDDQSFFLKPMLSDAFFISS 72 (135)
T ss_dssp TTTSSCCCSCHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCcchhhhhhhccchhhhH
Confidence 35544334556789999999999854
No 8
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=8.55 E-value=1.7e+02 Score=25.92 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhc------CCCeEeecCCC-------CccCCCCCc-ccceEeeC-CCCCCCC
Q 040842 21 EALVSSIKEKMERIV------SALCIDRAGVA-------VPQEHKDFY-IPDKVSIG-PLHYGEG 70 (394)
Q Consensus 21 ~~~~~~i~~~l~~~~------~~~~I~rVP~~-------lr~~n~~aY-~P~vVSIG-PyHhg~~ 70 (394)
+.++..+++++.... ++-++|||=.. +.....+.+ -.++|||| .|.+|.+
T Consensus 100 ~~Lv~~l~~~i~ere~~~~~~~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~~~~~~~~~~~~~ 164 (202)
T 3drx_A 100 TSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNE 164 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSCCCEEEEEEECSTHHHHHHHTCCTTCEEEEEEEC---------
T ss_pred HHHHHHHHHHHHHHhcccccCCCcceeeeeeCCHHHHHHHHHhhccccChhheEeccccccCCCc
Confidence 566777766665432 34478887554 223344555 47899999 7888864
No 9
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=7.88 E-value=7.9e+02 Score=27.14 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=68.9
Q ss_pred HHHHHHcCcEEeeCC-CCCc-cceEEcCcEEEeCcEEEecChhHHHHHHHHHHhcCCCCCcccchHHHHHhhhCCChhhH
Q 040842 258 AKMLKEAGVLIKKSK-TENL-LDIKFAHGVLEIPPIRVHQHTESLLRNLIAFEQCPCDNTQHISSYVILMKSLIPTRKDA 335 (394)
Q Consensus 258 A~eL~~aGVkfk~~~-~~~~-lDI~F~~G~L~iP~l~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fm~~Li~t~~DV 335 (394)
+.|.++.||+|.+.. ..|- .+-+..+|.+..|--.|..-.+....++++--+ ...++|.--|....--+...+
T Consensus 935 v~Ea~~~Gi~vlppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~-----~gpF~s~~Df~~R~~v~k~~l 1009 (1041)
T 3f2b_A 935 ALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRARE-----EGEFLSKEDLQQRGKLSKTLL 1009 (1041)
T ss_dssp HHHHHHTTCEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHH-----TSCCCSHHHHHHHHTCCHHHH
T ss_pred HHHHHHcCCeeCcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHh-----CCCCCCHHHHHHHHCcCHHHH
Confidence 457789999999854 2232 233345788999988899999999999887332 134888888888877899999
Q ss_pred HHHHHCCceeccCCCChhHHHHHH
Q 040842 336 KSLKRRQILINYDVDENDGSRLFD 359 (394)
Q Consensus 336 ~lL~~~gIi~~~~lg~de~a~lfn 359 (394)
+.|.+.|.+.. |+......+|.
T Consensus 1010 E~Li~aGAfd~--l~~~~ql~~f~ 1031 (1041)
T 3f2b_A 1010 EYLESRGCLDS--LPDHNQLSLFS 1031 (1041)
T ss_dssp HHHHHTTTTTT--SCSSCSCCCC-
T ss_pred HHHHHCCCCcC--CCchhhhhhhc
Confidence 99999999976 46332244443
No 10
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=6.83 E-value=5.6e+02 Score=18.63 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCchhcHHHHHHHHHHhHHHHHhhcccCCCCChHHHHHHH
Q 040842 82 YLYALLNRKPDIEASLDACVKALKGLEHKARLCYVENINISSDEFVKMM 130 (394)
Q Consensus 82 ~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~~~~~~ef~~Mm 130 (394)
.++..+... ...+..++..|..--.++.+-.. -+.++|+.||
T Consensus 17 qlR~~vqqN---P~lL~~lLqqL~~~NPqL~q~I~----~n~e~Fl~ll 58 (72)
T 1pve_A 17 QMRQIIQQN---PSLLPALLQQIGRENPQLLQQIS----QHQEHFIQML 58 (72)
T ss_dssp THHHHHTTC---GGGHHHHHHHHHTTCHHHHHHHH----TTHHHHHHHH
T ss_pred HHHHHHHHC---HHHHHHHHHHHHhHCHHHHHHHH----HCHHHHHHHH
Confidence 356777777 56777777776655555554433 4688999988
Done!