Query 040842
Match_columns 394
No_of_seqs 125 out of 681
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 20:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 44.1 30 0.0022 25.3 6.5 55 77-131 3-77 (97)
2 d2i4ra1 c.149.1.1 (A:4-79) V-t 30.1 9.1 0.00066 26.8 1.4 45 19-63 26-76 (76)
3 d2outa1 a.140.3.2 (A:94-131) U 11.9 33 0.0024 19.7 0.8 16 259-274 6-21 (38)
4 d1iloa_ c.47.1.1 (A:) MTH985, 7.0 27 0.002 24.3 -1.3 35 261-296 25-59 (77)
5 d1pzra_ a.38.2.1 (A:) Erythron 6.6 1.2E+02 0.0089 19.0 2.0 32 75-112 28-59 (60)
6 d1v8ca2 d.129.5.1 (A:88-165) M 5.4 1E+02 0.0074 20.5 1.0 24 283-307 48-74 (78)
7 d1qlsa_ a.39.1.2 (A:) Calcycli 5.3 3.2E+02 0.023 19.0 4.1 18 172-189 36-61 (95)
8 d1nrjb_ c.37.1.8 (B:) Signal r 5.1 75 0.0055 24.6 0.3 19 54-72 1-19 (209)
9 d1rwya_ a.39.1.4 (A:) Parvalbu 5.1 4.8E+02 0.035 17.8 5.2 51 80-130 43-106 (109)
10 d1ctda_ a.39.1.5 (A:) Troponin 4.3 3.4E+02 0.025 15.2 2.7 24 108-131 3-31 (34)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.07 E-value=30 Score=25.26 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCC--chhcHHHHHHHHH---------------HhHHHHHhhccc---CCCCChHHHHHHHH
Q 040842 77 EHKWRYLYALLNRKPD--IEASLDACVKALK---------------GLEHKARLCYVE---NINISSDEFVKMML 131 (394)
Q Consensus 77 ~~K~~~l~~~l~~~~~--~~~~l~~~~~~i~---------------~~e~~~R~~Y~~---~~~~~~~ef~~Mml 131 (394)
+.|.||+=+.+..+.+ ....++.++..+. .+|..+|+|+.. ..+++.++|++.|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 3589999999987642 1234444443332 236677888752 22577777776664
No 2
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.09 E-value=9.1 Score=26.75 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHhhc------CCCeEeecCCCCccCCCCCcccceEeeC
Q 040842 19 ANEALVSSIKEKMERIV------SALCIDRAGVAVPQEHKDFYIPDKVSIG 63 (394)
Q Consensus 19 ~~~~~~~~i~~~l~~~~------~~~~I~rVP~~lr~~n~~aY~P~vVSIG 63 (394)
+.++....+++.++.-. ..-..-++|+.+++.-.+.-.|.++.||
T Consensus 26 ~~ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 26 SDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp SHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCSSEEEEEC
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHHhcCCCCEEEecC
Confidence 34566667776655422 4444557788888877888999999998
No 3
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=11.93 E-value=33 Score=19.72 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=12.5
Q ss_pred HHHHHcCcEEeeCCCC
Q 040842 259 KMLKEAGVLIKKSKTE 274 (394)
Q Consensus 259 ~eL~~aGVkfk~~~~~ 274 (394)
.+|-+.||.||.+.+.
T Consensus 6 aqltergitfkqsatk 21 (38)
T d2outa1 6 AQLTERGITFKQSATK 21 (38)
T ss_dssp HHHHHHTCCCSSSCCS
T ss_pred HHHHHcCceeeccchh
Confidence 4788999999987543
No 4
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.98 E-value=27 Score=24.31 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=22.1
Q ss_pred HHHcCcEEeeCCCCCccceEEcCcEEEeCcEEEecC
Q 040842 261 LKEAGVLIKKSKTENLLDIKFAHGVLEIPPIRVHQH 296 (394)
Q Consensus 261 L~~aGVkfk~~~~~~~lDI~F~~G~L~iP~l~id~~ 296 (394)
+.+.||.-...+-..+-+|. +.|++..|.|.||+.
T Consensus 25 ~~e~gi~a~v~kv~d~~ei~-~ygVmstPalvIdg~ 59 (77)
T d1iloa_ 25 VKELGIDAEFEKIKEMDQIL-EAGLTALPGLAVDGE 59 (77)
T ss_dssp HHHTTCCEEEEEECSHHHHH-HHTCSSSSCEEETTE
T ss_pred HHHcCCceEEEEeCCHHHHH-HcCCcCCCEEEECCE
Confidence 34566655443323333442 579999999999985
No 5
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=6.62 E-value=1.2e+02 Score=19.02 Aligned_cols=32 Identities=38% Similarity=0.558 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhcCCCchhcHHHHHHHHHHhHHHHH
Q 040842 75 MEEHKWRYLYALLNRKPDIEASLDACVKALKGLEHKAR 112 (394)
Q Consensus 75 mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R 112 (394)
|-+.|+| +.++|+ -..++.....+++.|-+|+
T Consensus 28 mtedkLR---RYLkRT---v~eLdsVtaRLrEvEyRAg 59 (60)
T d1pzra_ 28 MTEEKLR---RYLKRT---VTELDSVTARLREVEHRAG 59 (60)
T ss_dssp SHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHH---HHHHHH---HHHHHHHHHHHHHHHHhcc
Confidence 6566654 556676 5667777777887776553
No 6
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.38 E-value=1e+02 Score=20.48 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=15.6
Q ss_pred CcEEEeCcEEEec---ChhHHHHHHHHH
Q 040842 283 HGVLEIPPIRVHQ---HTESLLRNLIAF 307 (394)
Q Consensus 283 ~G~L~iP~l~id~---~T~~llrNLiA~ 307 (394)
-|.|+||+|.|.- ..++++- =|||
T Consensus 48 vgsl~ip~lrvevege~ae~w~~-ria~ 74 (78)
T d1v8ca2 48 VGSLSIPQLRVEVEGEEAERWFE-RIAF 74 (78)
T ss_dssp ETTEEEEEEEEEEEETTHHHHHH-HHHH
T ss_pred ecceecceEEEEeccHHHHHHHH-HHHh
Confidence 4889999998764 3445543 3454
No 7
>d1qlsa_ a.39.1.2 (A:) Calcyclin (S100) {Pig (Sus scrofa), calgizzarin s100c (s100a11) [TaxId: 9823]}
Probab=5.35 E-value=3.2e+02 Score=18.97 Aligned_cols=18 Identities=17% Similarity=0.556 Sum_probs=15.5
Q ss_pred hhcccchHHH--------HHHHHhhc
Q 040842 172 LLENQIPFFI--------LQRLFEIV 189 (394)
Q Consensus 172 LLENQiPffV--------L~~L~~~~ 189 (394)
||++|+|=|+ ++++++.+
T Consensus 36 Ll~~El~~~l~~~~d~~~vd~im~~L 61 (95)
T d1qlsa_ 36 FMNTELAAFTQNQKDPGVLDRMMKKL 61 (95)
T ss_dssp HHTTTSHHHHHHCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 8899999887 88888876
No 8
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.13 E-value=75 Score=24.56 Aligned_cols=19 Identities=32% Similarity=0.572 Sum_probs=16.5
Q ss_pred CcccceEeeCCCCCCCCcc
Q 040842 54 FYIPDKVSIGPLHYGEGPL 72 (394)
Q Consensus 54 aY~P~vVSIGPyHhg~~~L 72 (394)
.|.|.|+=+||-..|+..|
T Consensus 1 ~~~p~V~lvG~~n~GKTSL 19 (209)
T d1nrjb_ 1 SYQPSIIIAGPQNSGKTSL 19 (209)
T ss_dssp CCCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 5999999999999997554
No 9
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}
Probab=5.06 E-value=4.8e+02 Score=17.76 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCchhcHHHHHHHHHHh--------HH---HHHhhcccCC--CCChHHHHHHH
Q 040842 80 WRYLYALLNRKPDIEASLDACVKALKGL--------EH---KARLCYVENI--NISSDEFVKMM 130 (394)
Q Consensus 80 ~~~l~~~l~~~~~~~~~l~~~~~~i~~~--------e~---~~R~~Y~~~~--~~~~~ef~~Mm 130 (394)
++.+=..+...+++..+.+++...++.+ ++ .+-+.|..+- .++-+||+.||
T Consensus 43 ~~~~F~~~D~d~~G~I~~~El~~~l~~l~~~~~~~~~~e~~~~~~~~D~d~dG~i~~~EF~~~m 106 (109)
T d1rwya_ 43 VKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLV 106 (109)
T ss_dssp HHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred HHHHhhcccCCCCCcCcHHHHHHHHHHhccccccCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 3333334444332245666666665543 11 2223332222 46667777776
No 10
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.29 E-value=3.4e+02 Score=15.15 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=14.6
Q ss_pred HHHHHhhcc---cCC--CCChHHHHHHHH
Q 040842 108 EHKARLCYV---ENI--NISSDEFVKMML 131 (394)
Q Consensus 108 e~~~R~~Y~---~~~--~~~~~ef~~Mml 131 (394)
|+++-.|+. ... -++.+||++|+=
T Consensus 3 EeELae~FRifDkNaDGyiD~eEl~~ilr 31 (34)
T d1ctda_ 3 EEELANAFRIFDKNADGYIDIEELGEILR 31 (34)
T ss_dssp HHHHHHHHHTTCCSSSSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccccHHHHHHHHH
Confidence 344455553 333 278899999874
Done!