BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040843
         (379 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DDD|A Chain A, Crystal Structure Of An Immunogenic Protein From Ehrlichia
           Chaffeensis
          Length = 327

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 296 DYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYK 349
           DYG  NK+  +I+ T  + +  +++  Y  M+ +I    +  EYY ++G+ FY+
Sbjct: 59  DYGKDNKIICSISSTTGSVYNLNSI-RYSNMDISIVQSDL--EYYAYNGLGFYE 109


>pdb|4GME|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
           Efi-502209) From Caulobacter Crescentus Cb15 Complexed
           With Magnesium And D-Mannonate
 pdb|4GME|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
           Efi-502209) From Caulobacter Crescentus Cb15 Complexed
           With Magnesium And D-Mannonate
          Length = 426

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 26/126 (20%)

Query: 83  PIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHS 142
           P+Y +  G   TGV V  H  G       + ++DT+      A  V Y +  Y   R  +
Sbjct: 128 PVYQLLGGACRTGVTVYGHANG-------ETIEDTI------AEAVKYKAMGYKAIRLQT 174

Query: 143 ------NTASLERDEVFVPKTKSEVPF-----YSKYFNNPPGRALTLLVTLTLGWPLYLA 191
                 +T  + +D++F     +++P       +KY N+ P   L       LGW ++L 
Sbjct: 175 GVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVP--KLFERAREVLGWDVHLL 232

Query: 192 LNVSGR 197
            +V  R
Sbjct: 233 HDVHHR 238


>pdb|3VCN|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
           Efi-502209) From Caulobacter Crescentus Cb15
 pdb|3VCN|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
           Efi-502209) From Caulobacter Crescentus Cb15
          Length = 425

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 26/126 (20%)

Query: 83  PIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHS 142
           P+Y +  G   TGV V  H  G       + ++DT+      A  V Y +  Y   R  +
Sbjct: 127 PVYQLLGGACRTGVTVYGHANG-------ETIEDTI------AEAVKYKAMGYKAIRLQT 173

Query: 143 ------NTASLERDEVFVPKTKSEVPF-----YSKYFNNPPGRALTLLVTLTLGWPLYLA 191
                 +T  + +D++F     +++P       +KY N+ P   L       LGW ++L 
Sbjct: 174 GVPGLASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVP--KLFERAREVLGWDVHLL 231

Query: 192 LNVSGR 197
            +V  R
Sbjct: 232 HDVHHR 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,026,650
Number of Sequences: 62578
Number of extensions: 558759
Number of successful extensions: 1658
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1657
Number of HSP's gapped (non-prelim): 4
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)