Query 040843
Match_columns 379
No_of_seqs 196 out of 1715
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02505 omega-6 fatty acid de 100.0 1.2E-74 2.6E-79 552.4 37.0 377 1-379 1-381 (381)
2 PLN02498 omega-3 fatty acid de 100.0 5.3E-68 1.2E-72 508.8 33.4 338 19-378 94-440 (450)
3 PLN02598 omega-6 fatty acid de 100.0 9.4E-58 2E-62 441.6 32.0 324 23-376 74-400 (421)
4 cd03507 Delta12-FADS-like The 100.0 4.6E-40 1E-44 296.2 19.6 220 43-325 1-222 (222)
5 PLN03198 delta6-acyl-lipid des 100.0 2.4E-38 5.2E-43 315.2 25.2 314 27-363 187-516 (526)
6 PLN03199 delta6-acyl-lipid des 100.0 9E-38 2E-42 310.7 23.4 324 28-362 113-471 (485)
7 COG3239 DesA Fatty acid desatu 100.0 2.3E-37 4.9E-42 295.1 24.8 284 24-339 13-299 (343)
8 cd03511 Rhizopine-oxygenase-li 100.0 9.2E-37 2E-41 286.1 27.9 269 28-339 2-276 (285)
9 cd03506 Delta6-FADS-like The D 100.0 1.8E-36 3.8E-41 270.4 17.1 198 84-339 2-202 (204)
10 cd03508 Delta4-sphingolipid-FA 100.0 2E-32 4.3E-37 254.2 22.8 247 39-338 10-260 (289)
11 cd03514 CrtR_beta-carotene-hyd 100.0 1.5E-32 3.3E-37 244.6 19.0 180 81-338 23-204 (207)
12 cd03513 CrtW_beta-carotene-ket 100.0 6E-31 1.3E-35 235.3 20.9 192 78-328 28-224 (225)
13 cd03509 DesA_FADS-like Fatty a 100.0 2.5E-30 5.4E-35 240.8 20.9 221 84-338 29-259 (288)
14 PLN02579 sphingolipid delta-4 100.0 6.9E-30 1.5E-34 240.0 22.7 232 78-354 69-302 (323)
15 cd03510 Rhizobitoxine-FADS-lik 100.0 1.3E-30 2.8E-35 226.0 14.6 169 56-332 2-175 (175)
16 PF00487 FA_desaturase: Fatty 100.0 9.7E-31 2.1E-35 239.8 12.8 245 79-339 3-249 (257)
17 KOG4232 Delta 6-fatty acid des 100.0 3E-28 6.5E-33 228.1 22.6 301 26-361 98-419 (430)
18 KOG2987 Fatty acid desaturase 99.9 3E-22 6.5E-27 174.8 15.5 253 27-333 21-281 (324)
19 cd03512 Alkane-hydroxylase Alk 99.8 2E-18 4.4E-23 162.9 18.5 211 77-331 67-286 (314)
20 cd01060 Membrane-FADS-like The 99.7 7.8E-18 1.7E-22 137.6 8.3 59 95-153 14-72 (122)
21 PF11960 DUF3474: Domain of un 98.6 6.1E-08 1.3E-12 77.7 4.8 47 17-63 89-135 (136)
22 COG1398 OLE1 Fatty-acid desatu 98.5 1.7E-06 3.6E-11 77.8 12.8 52 100-152 66-118 (289)
23 PLN02220 delta-9 acyl-lipid de 98.4 4.3E-05 9.2E-10 71.5 18.1 48 103-151 80-127 (299)
24 KOG1600 Fatty acid desaturase 97.6 0.0011 2.4E-08 61.2 12.6 48 103-151 91-138 (321)
25 cd03505 Delta9-FADS-like The D 97.4 0.0034 7.4E-08 54.3 12.1 48 103-151 27-74 (178)
26 cd03508 Delta4-sphingolipid-FA 40.4 56 0.0012 30.7 5.2 16 309-324 99-114 (289)
27 PF13829 DUF4191: Domain of un 38.3 87 0.0019 28.2 5.7 60 26-93 7-66 (224)
28 PRK15358 pathogenicity island 32.9 1.6E+02 0.0034 25.7 6.1 23 12-34 10-32 (239)
29 cd03509 DesA_FADS-like Fatty a 31.7 3.7E+02 0.008 25.1 9.2 16 135-150 230-245 (288)
30 PF06781 UPF0233: Uncharacteri 29.9 1.8E+02 0.0038 22.0 5.4 17 12-28 2-18 (87)
31 TIGR02230 ATPase_gene1 F0F1-AT 29.3 2.7E+02 0.0059 21.6 6.9 10 42-51 35-44 (100)
32 cd03511 Rhizopine-oxygenase-li 26.1 2E+02 0.0043 26.6 6.4 14 309-322 97-110 (285)
33 PF13239 2TM: 2TM domain 25.9 2.7E+02 0.0059 20.4 7.4 25 78-102 41-65 (83)
34 PRK00159 putative septation in 24.7 3.1E+02 0.0068 20.7 6.9 15 12-26 2-16 (87)
35 KOG4232 Delta 6-fatty acid des 24.4 3E+02 0.0066 27.2 7.3 54 263-320 155-208 (430)
36 PLN02505 omega-6 fatty acid de 23.6 2.9E+02 0.0062 27.1 7.1 41 83-123 256-296 (381)
37 PF03839 Sec62: Translocation 23.6 2.8E+02 0.0061 25.0 6.5 7 69-75 127-133 (224)
38 cd03507 Delta12-FADS-like The 22.5 5.3E+02 0.012 22.9 8.3 13 309-321 86-98 (222)
39 PF04298 Zn_peptidase_2: Putat 22.4 29 0.00062 31.2 -0.0 18 89-106 83-100 (222)
40 PLN03199 delta6-acyl-lipid des 21.9 3.1E+02 0.0067 27.8 7.3 36 1-37 1-36 (485)
No 1
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=1.2e-74 Score=552.44 Aligned_cols=377 Identities=80% Similarity=1.435 Sum_probs=332.2
Q ss_pred CCCCCCCc----cccccccccCCCCCCCCCCCHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 040843 1 MGAGGPSL----QREKKESLIQPAPHTKPPFTLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSP 76 (379)
Q Consensus 1 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~ 76 (379)
|++++-++ +.++++...+..|.++|++|++|||+++|++||++|++|++.++++|+++++++++++..+.+.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~ 80 (381)
T PLN02505 1 MGAGGRMSVPTSSKKGSASAVKRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGP 80 (381)
T ss_pred CCCCCcCCCCccccCccccccccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 67777665 22356666788888899999999999999999999999999999999999998877655343334555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCccccc
Q 040843 77 FAYLAWPIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPK 156 (379)
Q Consensus 77 ~~~~~~~l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~ 156 (379)
+.+.+++++++++|.++.++++++|||+|+++++++++|+++|.+++.+++.|+..||.+|+.||++||+.++||++.|.
T Consensus 81 ~~~~l~~~~~~~~G~~~~~l~vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~ 160 (381)
T PLN02505 81 LSYVAWPLYWAAQGCVLTGVWVIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPK 160 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCc
Confidence 56778888999999999999999999999999999999999999999899999999999999999999999999999887
Q ss_pred ccccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHH
Q 040843 157 TKSEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLY 236 (379)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (379)
+++++....+..++|+.++..++++..+|||+|++.+..++.+.+..++++|.+++++++++.++.+++++++++.++++
T Consensus 161 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~ 240 (381)
T PLN02505 161 KKSALPWYSKYLNNPPGRLLHIVVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLY 240 (381)
T ss_pred CHHHHhHHHHHhcChHHHHHHHHHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654434444578887777766788899999999888876655567889998888888999999999988888877776
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCcchhhhhhhcccCCCcchHHHhcCcccchhhhhh
Q 040843 237 RVAMAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHL 316 (379)
Q Consensus 237 ~~~~~~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~~~l~~l~~~i~nyH~~HHl 316 (379)
.++...|++.++.+|++|+++++.++.+++|+||++|++|++++++|++.++|+.|+|++|++++++++||+++|+.||+
T Consensus 241 ~~~~~~G~~~~l~~y~vP~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv~HHl 320 (381)
T PLN02505 241 RLAAAKGLAWVLCVYGVPLLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHL 320 (381)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccchhhc
Confidence 66666799999999999999999999999999999999999999999999999999999999999999999669999999
Q ss_pred cCCCCccCHHHHHHHHHhhhhhccccCCchHHHHHHHHhhcCEeecCCCCCCCcceEEeecCC
Q 040843 317 FSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYRNKL 379 (379)
Q Consensus 317 fP~iP~y~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
+|+||+|||+||++.+|+.++++|++++.++++++|++.|+|++||+|+|. +||++||++.
T Consensus 321 ~srIP~Y~l~eA~~aik~~lg~~y~~~~~~~~~~l~~~~~~C~~v~~~~~~--~~v~~~~~~~ 381 (381)
T PLN02505 321 FSTMPHYHAMEATKAIKPILGEYYQFDGTPVYKALWREAKECIYVEPDEGG--KGVFWYNNKF 381 (381)
T ss_pred cCCCCCCCHHHHHHHHHHHhHHHhcCCCCcHHHHHHHHhcceEEeCcCCCC--CceEEEecCC
Confidence 999999999999999999999999998999999999999999999988663 8999999974
No 2
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=5.3e-68 Score=508.79 Aligned_cols=338 Identities=37% Similarity=0.722 Sum_probs=296.3
Q ss_pred CCCCCCCCCCHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHh
Q 040843 19 PAPHTKPPFTLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWV 98 (379)
Q Consensus 19 ~~~~~~~~~~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~ 98 (379)
..|..+|++|++|||+++|++||++|++|++.++++|+++++++++++. +. .+|++++++++++|+++.++++
T Consensus 94 ~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~-~~------~~w~~wpl~w~~~G~~~~gL~v 166 (450)
T PLN02498 94 FDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAA-YF------NNWVVWPLYWFAQGTMFWALFV 166 (450)
T ss_pred cCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HH------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999999999999999999999999999999999888776553 21 1477889999999999999999
Q ss_pred HhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHH
Q 040843 99 IAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTL 178 (379)
Q Consensus 99 l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~ 178 (379)
++|||+|+++|+++|+|+++|.+++.++++|+..||.+|+.||++||+.++||++.|.++++++.+ ++..+++++
T Consensus 167 l~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y~~l-----~~~~~~~~~ 241 (450)
T PLN02498 167 LGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKSL-----DKVTRTLRF 241 (450)
T ss_pred HHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHhc-----cccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887653322 112233321
Q ss_pred H-HHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040843 179 L-VTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAMAKGLAWLICVYGVPLLI 257 (379)
Q Consensus 179 ~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~~~ 257 (379)
. ....+|||+|++.+..++ ..++|+|.+++|.++++.++++++++++++.++++.++...|+..++++|++|+++
T Consensus 242 ~~~~~~~g~p~YL~~~~~g~----~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv 317 (450)
T PLN02498 242 TLPFPMLAYPFYLWSRSPGK----KGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWI 317 (450)
T ss_pred HHHHHHHHHHHHHhhhccCC----cCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 233679999988877654 25889998889999999998888888887777777777778999999999999999
Q ss_pred HHHHHHHhhhcccC--CCCCCccCCCCcchhhhhhhcccCCCcchHHHhcCcccchhhhhhcCCCCccCHHHHHHHHHhh
Q 040843 258 VNGFLVLITYLQHT--HPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPI 335 (379)
Q Consensus 258 ~~~~~~~~~~~~H~--~~~~p~~~~~~~~~~~~~l~T~~~~~~~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~l~~~ 335 (379)
+++|+.+++|+||+ ++++|++++++|++.++|+.|+|++|||++.+++|| ++|+.||+||+||+|||+||++.+|+.
T Consensus 318 ~~~WL~~iTyLhHt~~~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I-~tHV~HHlf~~IPhYhl~eAt~aiK~~ 396 (450)
T PLN02498 318 FVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPV 396 (450)
T ss_pred HHHHHHHhhhhcccCCCCCCCCCCCCCcchhhccceeecCcccchhhhhcCc-ccchhhhccCCCCCcCHHHHHHHHHHH
Confidence 99999999999999 688999999999999999999999999999999999 699999999999999999999999999
Q ss_pred hhhccccCCch------HHHHHHHHhhcCEeecCCCCCCCcceEEeecC
Q 040843 336 LGEYYQFDGMP------FYKAAWREAKECLYVEPDENSPTKGLFWYRNK 378 (379)
Q Consensus 336 ~~~~~~~~~~~------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 378 (379)
++++|++.+.+ +++++|+++|+|+.||+| +||+||++.
T Consensus 397 lg~yy~e~~~~~~~p~~~~~~l~r~~~~c~~v~~~-----~~v~~y~~~ 440 (450)
T PLN02498 397 LGKYYREPKKSGPLPFHLLGSLIRSMKQDHYVSDT-----GDVVYYQTD 440 (450)
T ss_pred hHHheecCCCCCCchhHHHHHHHHHhcceEEEeCC-----CCEEEEecc
Confidence 99999988875 899999999999999977 789999873
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=9.4e-58 Score=441.57 Aligned_cols=324 Identities=24% Similarity=0.430 Sum_probs=265.9
Q ss_pred CCCCCCHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhc
Q 040843 23 TKPPFTLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHE 102 (379)
Q Consensus 23 ~~~~~~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hd 102 (379)
.++++|++|||+++|++||++|++|++.+++.+++++++++++.. . .+|++++++++++|+.+.++++++||
T Consensus 74 ~~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~~~-~-------~~w~~~~l~~~~~G~~~~~l~vl~He 145 (421)
T PLN02598 74 LPDNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAAIA-V-------APWYLLPLAWAWLGTAITGFFVIGHD 145 (421)
T ss_pred CCCCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-H-------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999988765544221 1 24667888899999999999999999
Q ss_pred cccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHHHH
Q 040843 103 CGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLVTL 182 (379)
Q Consensus 103 a~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
|+|+++++++++|+++|.+++.++++|+..||.+|+.||++||+.++|||+.|.+++++. + ..++.++ +++.
T Consensus 146 c~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~---~--~~~~~r~---l~~~ 217 (421)
T PLN02598 146 CGHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFD---N--ADPLRKA---MMRA 217 (421)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHh---h--cCHHHHH---HHHH
Confidence 999999999999999999999999999999999999999999999999999987766421 1 1333332 3456
Q ss_pred HHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040843 183 TLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATY-VLYRVAMAKGLAWLICVYGVPLLIVNGF 261 (379)
Q Consensus 183 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~l~~~l~P~~~~~~~ 261 (379)
.+| |+|.+.+... +..+++++. .++++++.++.++.+++.++.. ++..+...+|.+.++.+|++|+++.+++
T Consensus 218 ~~G-P~yl~~~~~~----~~~~hf~~~--~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~w 290 (421)
T PLN02598 218 GMG-PLWWWASIGH----WLFWHFDLN--KFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFW 290 (421)
T ss_pred hHh-HHHHHHhhhc----ceeeccCcc--cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 778 8888766532 124556653 3677778787777766655332 2222334578888889999999999999
Q ss_pred HHHhhhcccCCCCCCccCCCCcchhhhhhh-cccCCCc-chHHHhcCcccchhhhhhcCCCCccCHHHHHHHHHhhhhhc
Q 040843 262 LVLITYLQHTHPALPHYNSSEWDWLRGALS-TVDRDYG-VLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEY 339 (379)
Q Consensus 262 ~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~-T~~~~~~-~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~l~~~~~~~ 339 (379)
+++++++||++|++|++++++|++.++++. |++++++ |++++++|+ |||++||+||+||+||||++++.+++.++++
T Consensus 291 l~~it~lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnI-n~HV~HHLfP~IP~Y~lpea~~alk~~~g~~ 369 (421)
T PLN02598 291 MSTFTMVHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDI-SVHIPHHISSKIPSYNLRKAHASLQENWGKH 369 (421)
T ss_pred HHHHHHHhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCC-ccchhhhcCCCCCcchHHHHHHHHHHHhccc
Confidence 999999999999999988889999999987 7888886 779999998 8999999999999999999999999999999
Q ss_pred cccCCchHHHHHHHHhhcCEeecCCCCCCCcceEEee
Q 040843 340 YQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYR 376 (379)
Q Consensus 340 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 376 (379)
|++. ...++++++..|+|++||+| +|-+.|+
T Consensus 370 y~~~-~~~~~~l~~~~~~C~~~d~~-----~~~~~f~ 400 (421)
T PLN02598 370 LNKA-TFNWRLMKTILTQCHVYDKE-----KNYVPFD 400 (421)
T ss_pred cccC-chhHHHHHHHhhheEEEcCC-----CCeeecc
Confidence 8876 34588999999999999977 3355554
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=4.6e-40 Score=296.24 Aligned_cols=220 Identities=48% Similarity=0.867 Sum_probs=170.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHH
Q 040843 43 RSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLIL 122 (379)
Q Consensus 43 ~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~ 122 (379)
||.++++.+++.|+++++++++++... .+|++++++++++|+.+.++++++|||+|+++++++++|+++|.++
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~ 73 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLL-------LSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHIL 73 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHH
Confidence 577899999999999998877654211 2467888899999999999999999999999999999999999999
Q ss_pred HhhcccchHHhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 040843 123 HSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRF 202 (379)
Q Consensus 123 ~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 202 (379)
+.+++.|+..||..|+.||++||+.++|+|+.|..+.++. ++.... + |.
T Consensus 74 ~~~~~~p~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~-------~~~~~~-----------~-y~------------ 122 (222)
T cd03507 74 HSPLLVPYHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYA-------ELPKRL-----------P-YR------------ 122 (222)
T ss_pred HHHHhCChHHHHHHHHHHHhccCCCCCCCcccCcCHHHhh-------cccccc-----------h-HH------------
Confidence 9999999999999999999999999999999776543210 000000 0 00
Q ss_pred ccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCC
Q 040843 203 ACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAMAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSE 282 (379)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~~~~~ 282 (379)
...+. +........++ +..+ ++++|++|+++.+.+++++++++|++|++|++++++
T Consensus 123 --------------~~~~~----~~~~~~g~~~~---~~~~---~~~~~~ip~l~~~~~l~~~t~l~H~~~~~~~~~~~~ 178 (222)
T cd03507 123 --------------LYRNP----FLMLSLGWPYY---LLLN---VLLYYLIPYLVVNAWLVLITYLQHTFPDIPWYRADE 178 (222)
T ss_pred --------------HHHHH----HHHHHHHHHHH---HHHH---HHHHHHhHHHHHHHHHHeeeEecCCCCCCCCcCccc
Confidence 00000 00000000011 0111 567889999999999999999999999999988889
Q ss_pred cchhhhhhh-cccCCCc-chHHHhcCcccchhhhhhcCCCCccCH
Q 040843 283 WDWLRGALS-TVDRDYG-VLNKVFHNITDTHVAHHLFSTMPHYHA 325 (379)
Q Consensus 283 ~~~~~~~l~-T~~~~~~-~l~~l~~~i~nyH~~HHlfP~iP~y~L 325 (379)
|++.+.|+. |+|++++ |++++++|+ |||+|||+||+||+|+|
T Consensus 179 w~~~~~q~~~t~~~~~~~~~~~l~~~i-~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 179 WNFAQAGLLGTVDRDYGGWLNWLTHII-GTHVAHHLFPRIPHYNL 222 (222)
T ss_pred cchhhhcceeeeeccccHHHHHHhcCC-CcccchhcCCCCCcCcC
Confidence 999777876 5677775 788899998 89999999999999985
No 5
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=2.4e-38 Score=315.19 Aligned_cols=314 Identities=13% Similarity=0.124 Sum_probs=209.3
Q ss_pred CCHHHHHHhcC-CCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhcccc
Q 040843 27 FTLSQIKKAIP-PHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHECGH 105 (379)
Q Consensus 27 ~~~~~ir~~lp-~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda~H 105 (379)
-.++++|+++. +++|++++.+....++..++++++++++.+ . .. .++..+++++++|+++.++++++|||+|
T Consensus 187 ~dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~-~---~~---~~~~~ll~a~llgl~~~q~g~l~HD~~H 259 (526)
T PLN03198 187 KDFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIIC-C---SK---SISAVLASACMMALCFQQCGWLSHDFLH 259 (526)
T ss_pred hhHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHH-H---Hc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46889999876 579999988777666666555555554332 1 11 1334566788999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHHh-hcccchHHhHHhhhccccCCCCCC-----CCCcccccccccchhhhhhhc----CchhHH
Q 040843 106 HAFSDYQWVDDTVGLILHS-ALLVPYFSWKYSHRRHHSNTASLE-----RDEVFVPKTKSEVPFYSKYFN----NPPGRA 175 (379)
Q Consensus 106 ~~~~~~~~~N~~~G~l~~~-~~~~p~~~wr~~H~~HH~~tn~~~-----~Dpd~~p~~~~~~~~~~~~~~----~~~~~~ 175 (379)
+++++++++|+++|.+++. +++.|+.+||..||.||++||..+ +|||+...+-. ++.++..+ ..+.++
T Consensus 260 ~s~~~~~~~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~--~~~~~~~~~~~~~~~~~~ 337 (526)
T PLN03198 260 NQVFETRWLNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLI--AWSKDILATVENKTFLRI 337 (526)
T ss_pred ccccCCcHHHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCcccee--EechhhhhcchhhhHHHH
Confidence 9999999999999988764 567999999999999999999987 79998433211 11111111 111121
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHH-H-HHHhhHHHHHHHHHH
Q 040843 176 LTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYR-V-AMAKGLAWLICVYGV 253 (379)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~g~~~~l~~~l~ 253 (379)
..+|+++.+|++.+....+.. ....+..... .+..++. .+++..+++++++. + +...+.+..++++++
T Consensus 338 --~~yQh~~f~~ll~l~~~~~~~---~s~~~~~~~~-~~~~~~~----~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l 407 (526)
T PLN03198 338 --LQYQHLFFMALLFFARGSWLF---WSWRYTSTAK-LAPADRL----LEKGTILFHYFWFIGTACYLLPGWKPLVWMAV 407 (526)
T ss_pred --HhhhhHHHHHHHHHHHHHHHH---HHHHHHhccc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 136777777665443221100 0000000000 0111121 22233333222221 1 122333334556677
Q ss_pred HHHHHHHHHHHhhhcccCCCCCCccCCCCcchhhhhhhc-ccCCCc-chHHHhcCcccchhhhhhcCCCCccCHHHHHHH
Q 040843 254 PLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALST-VDRDYG-VLNKVFHNITDTHVAHHLFSTMPHYHAMEATIA 331 (379)
Q Consensus 254 P~~~~~~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T-~~~~~~-~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~ 331 (379)
..++.+.++.++++++|+.+++.. .+ -+|.+.|+.| .|.+.+ |++|+++|+ |||+||||||+||++|||+++++
T Consensus 408 ~~~~~g~~l~~vF~lnH~~~~v~~--~~-~dw~~~Qv~tT~n~~~~~~~~wf~GGL-N~QiEHHLFP~iP~~~l~~i~pi 483 (526)
T PLN03198 408 TELMCGMLLGFVFVLSHNGMEVYN--KS-KEFVNAQIVSTRDIKANIFNDWFTGGL-NRQIEHHLFPTMPRHNLNKIAPQ 483 (526)
T ss_pred HHHHHHHHHHhhhhccccCCCCCC--CC-cCHHHHHHhcCcCcCCchHHHHhhcCC-cccchhhcCCCCchhhHHHHhHH
Confidence 888899999999999999876542 22 2789999986 344334 678899997 99999999999999999999999
Q ss_pred HHhhhhhc-cccCCchHHHHHHHHhhcCEeecC
Q 040843 332 MKPILGEY-YQFDGMPFYKAAWREAKECLYVEP 363 (379)
Q Consensus 332 l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~ 363 (379)
+++.|+|+ ..|+..++++++.++++.++-+..
T Consensus 484 Vk~~C~k~GlpY~~~~~~~a~~~~l~~L~~vg~ 516 (526)
T PLN03198 484 VEAFCIKHGLVYEDVSIAAGTCKVLKALKEVAE 516 (526)
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999998 666777889988888776665443
No 6
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=9e-38 Score=310.74 Aligned_cols=324 Identities=11% Similarity=0.069 Sum_probs=209.2
Q ss_pred CHHHHHHhcC-CCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhccccc
Q 040843 28 TLSQIKKAIP-PHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHECGHH 106 (379)
Q Consensus 28 ~~~~ir~~lp-~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda~H~ 106 (379)
.++++++++. .++|++++......++..++++++++++.+ + .+ +++..+++++++|+.+.++++++|||+|+
T Consensus 113 ~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~l~aillg~~~~~~g~l~HDa~H~ 185 (485)
T PLN03199 113 GYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVF-Y---SD---RFAMHIASALLLGLFFQQCGWLAHDFLHH 185 (485)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHH-H---cC---cHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4789999998 478999977655544444444444443322 1 12 34556788999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHH-hhcccchHHhHHhhhccccCCCC-------CCCCCcccccc--c---c---cc-hhhhhhhc
Q 040843 107 AFSDYQWVDDTVGLILH-SALLVPYFSWKYSHRRHHSNTAS-------LERDEVFVPKT--K---S---EV-PFYSKYFN 169 (379)
Q Consensus 107 ~~~~~~~~N~~~G~l~~-~~~~~p~~~wr~~H~~HH~~tn~-------~~~Dpd~~p~~--~---~---~~-~~~~~~~~ 169 (379)
++++++++|+++|.+++ .+.+.|..+||..||.||++||. +++|||+...+ + . .+ +.......
T Consensus 186 ~~~~~~~~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~ 265 (485)
T PLN03199 186 QVFKKRKHGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKD 265 (485)
T ss_pred hhhCCchHHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccc
Confidence 99999999999997775 44689999999999999999997 36899973211 0 0 00 00001111
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcCC--CCCCcc--cccCCCCCC-CChhhhhHHHHHHHHHHHHHHHHHHHHH--H-
Q 040843 170 NPPGRALTLLVTLTLGWPLYLALNVSGR--PYDRFA--CHFDPKSPI-YSDRERLQIYISDAGIFAATYVLYRVAM--A- 241 (379)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~- 241 (379)
....+++. .+|+++.+|++.+....+. .+.... ........+ ..+++... ...+++..+++++++..+. .
T Consensus 266 ~~~~~~~~-~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~lp~~~~ 343 (485)
T PLN03199 266 SGFVKFAI-KFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQY-PLLEKAGILLHYAWMFTLSSGFG 343 (485)
T ss_pred cchhhHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 11223322 4788877777654332110 000000 000000000 01111111 2223344444333332111 2
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCcchhhhhhhc-ccCCC-----c-chHHHhcCcccchhh
Q 040843 242 -KGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALST-VDRDY-----G-VLNKVFHNITDTHVA 313 (379)
Q Consensus 242 -~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T-~~~~~-----~-~l~~l~~~i~nyH~~ 313 (379)
.+++..+.++++..++.++++.+++.+.|...+.+. +++..+|.+.|+.| .|.+. + |++|+++|+ |||+|
T Consensus 344 ~~~~~~~l~~~~~~~~~~g~~l~~~f~l~H~~~~~~~-~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGL-N~QIE 421 (485)
T PLN03199 344 RFSFAYSAFYFFTATASCGFFLAIVFGLGHNGMATYD-ADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGL-QYQVD 421 (485)
T ss_pred cccHHHHHHHHHHHHHHHhhHheEEEecCCccccccC-CCCCccHHHHHHHhccCccCCCCCcchHHHHHhccc-hhhhh
Confidence 344445667788888899999999999998655432 23344788999986 34432 2 688899987 99999
Q ss_pred hhhcCCCCccCHHHHHHHHHhhhhhc-cccCCchHHHHHHHHhhcCEeec
Q 040843 314 HHLFSTMPHYHAMEATIAMKPILGEY-YQFDGMPFYKAAWREAKECLYVE 362 (379)
Q Consensus 314 HHlfP~iP~y~Lp~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~ 362 (379)
|||||+||++|||++.+++|+.|+|+ .+|++.++.+++.++++.++-+.
T Consensus 422 HHLFP~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~~~~~L~~vg 471 (485)
T PLN03199 422 HHLFPMLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTMEVLHHLGKVA 471 (485)
T ss_pred hhcCCCCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 67777778888888777665544
No 7
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=2.3e-37 Score=295.07 Aligned_cols=284 Identities=25% Similarity=0.410 Sum_probs=187.3
Q ss_pred CCCCCHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhcc
Q 040843 24 KPPFTLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHEC 103 (379)
Q Consensus 24 ~~~~~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda 103 (379)
....+.+.+++.+|+++++++..+.+..++...++++++..... + + .+|+..+++++++|+.+.++++++|||
T Consensus 13 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~---~~w~~~~l~~~~~~~~l~~~~~v~Hd~ 85 (343)
T COG3239 13 NLAAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLA-Y---W---PSWWLLPLALLLAGLLLTGLFSVGHDC 85 (343)
T ss_pred hcccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHH-h---h---hhHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34568899999999998999888877766655555555433221 2 1 137788888999999999999999999
Q ss_pred ccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHHHHH
Q 040843 104 GHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLVTLT 183 (379)
Q Consensus 104 ~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (379)
+||+++|++|+||++|.+++.+.+.|+..||..|+.||++||++|+|||........ ...... ..+. +...
T Consensus 86 ~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~~~~~-~~~~~l----~~~~----i~~~ 156 (343)
T COG3239 86 GHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPETYVSYPEQ-LRRGPL----RFQL----IRLP 156 (343)
T ss_pred cccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHHHHhCchh-hhhhhH----HHHH----HHHH
Confidence 999999999999999999999988999999999999999999998887752211110 000000 0000 0000
Q ss_pred HHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHH
Q 040843 184 LGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAMAKGLAWLICVY-GVPLLIVNGFL 262 (379)
Q Consensus 184 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-l~P~~~~~~~~ 262 (379)
+. .+.+...+. ...+......+.+.++...........+. +. ...+..+..+| ++|+++.+.+.
T Consensus 157 ~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~----~~~~~~l~~~~~~~p~l~~~~~~ 221 (343)
T COG3239 157 WL--AFGFGPRWA------LLHFELLEKLFKRSGKAPKAAALATLLAA---IG----LAALLALAFFWGLIPLLLVGLWL 221 (343)
T ss_pred HH--HHhhhhhhh------hhhhhhhhhccCCcccchHHHHHHHHHHH---HH----HHHHHHHHHHHhHhHHHHHHHHH
Confidence 00 000000000 00000000011111111111111110000 00 01112223444 68999999999
Q ss_pred HHhhhcccCCCCCCccCCCCcchhhhhhh-cccCCCc-chHHHhcCcccchhhhhhcCCCCccCHHHHHHHHHhhhhhc
Q 040843 263 VLITYLQHTHPALPHYNSSEWDWLRGALS-TVDRDYG-VLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEY 339 (379)
Q Consensus 263 ~~~~~~~H~~~~~p~~~~~~~~~~~~~l~-T~~~~~~-~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~l~~~~~~~ 339 (379)
..+++++|..+.+++...+++++..+++. |++.+++ +++++++|+ |||+|||+||+||+|+||++++.+|+.+++.
T Consensus 222 ~~~~~~~h~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~-nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~ 299 (343)
T COG3239 222 VLVLFVHHTFDLLPHHGLEDWQWSDRALNARSNVDAPPLLRFLTGNI-NYHVEHHLFPDVPWYRLPRAHRLIKEALGER 299 (343)
T ss_pred HHHHHhhcccccccccccccchHHHHHHhccCccCchHHHHHhcCCc-cccHhhhCCCCCchhhHHHHHHHHHHHcCcC
Confidence 99999999988788776677888888887 4455556 688899998 8999999999999999999999999888744
No 8
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=9.2e-37 Score=286.10 Aligned_cols=269 Identities=21% Similarity=0.221 Sum_probs=180.1
Q ss_pred CHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhcccccc
Q 040843 28 TLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHECGHHA 107 (379)
Q Consensus 28 ~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda~H~~ 107 (379)
+.+|+++ +.++|+++++..++.++++++++.+++... . ++++.+++.+++|..+.+++.++|||+|++
T Consensus 2 ~~~~~~~-----L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g~~~~~~~~~~He~~H~~ 69 (285)
T cd03511 2 PRQELKQ-----LMQRSDAPGLLDTALWLGALAVSGILIAWT----W---GSWWALPAFLVYGVLYAALFARWHECVHGT 69 (285)
T ss_pred CHHHHHH-----HhCCcchhHHHHHHHHHHHHHHHHHHHHHH----h---hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566666 678999999999999988887765433211 1 233445557888999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHHHHHHHHH
Q 040843 108 FSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLVTLTLGWP 187 (379)
Q Consensus 108 ~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 187 (379)
++++|++|+++|.+++.+++.|+..||..|+.||++||++++|||........ +.+++ ....|++
T Consensus 70 ~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~-----------~~~~~----~~~~g~~ 134 (285)
T cd03511 70 AFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPT-----------LREYL----LALSGLP 134 (285)
T ss_pred ccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchH-----------HHHHH----HHHhChH
Confidence 99999999999999999999999999999999999999999999974211110 11111 1111111
Q ss_pred --HHHHHHh----cCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040843 188 --LYLALNV----SGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAMAKGLAWLICVYGVPLLIVNGF 261 (379)
Q Consensus 188 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~~~~~~~ 261 (379)
.+.+... .+. ....+ ++...++++.++.......++++.++..++...|++.++.+|++|++++..+
T Consensus 135 ~~~~~l~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~ 207 (285)
T cd03511 135 YWWGKLRTVFRHAFGA------VSEAE-KPFIPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPI 207 (285)
T ss_pred HHHHHHHHHHHHHhcc------ccccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 1111110 110 00011 1112233344444443334444444444445567777788999999998888
Q ss_pred HHHhhhcccCCCCCCccCCCCcchhhhhhhcccCCCcchHHHhcCcccchhhhhhcCCCCccCHHHHHHHHHhhhhhc
Q 040843 262 LVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGEY 339 (379)
Q Consensus 262 ~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~~~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~l~~~~~~~ 339 (379)
+.+++++||.+. +.. +.+. ++ .+|+..+ .|++++++|+ |||+|||+||+||+|+||++++.+++.+++.
T Consensus 208 ~~~~~~~eH~~~--~~~---~~~~-~~-trs~~~~-~~~~~l~~n~-nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~ 276 (285)
T cd03511 208 LRLFLLAEHGGC--PED---ANDL-RN-TRTTLTN-PPLRFLYWNM-PYHAEHHMYPSVPFHALPKLHELIKDDLPVP 276 (285)
T ss_pred HHHHHHhhcCCC--Ccc---cchh-hh-hhhhhhh-HHHHHHHcCC-chHHHHhcCCCCcHhHHHHHHHHHHHhCCCC
Confidence 888999999853 221 1111 11 1222111 3678889998 8999999999999999999999999887654
No 9
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=1.8e-36 Score=270.39 Aligned_cols=198 Identities=21% Similarity=0.277 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCcccccccccchh
Q 040843 84 IYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSEVPF 163 (379)
Q Consensus 84 l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~ 163 (379)
++++++|+.+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||++||++++|||+.+.+...
T Consensus 2 ~~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~--- 78 (204)
T cd03506 2 LLAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLA--- 78 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEE---
Confidence 35777888888999999999999999999999999999999889999999999999999999999999985433210
Q ss_pred hhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 040843 164 YSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAMAKG 243 (379)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 243 (379)
. ..+. + . ..+..++..... .. ++..++.+
T Consensus 79 ~----~~~~--------------~------~------------------~~~~~~~~~~~q---~~-~~~~~~~~----- 107 (204)
T cd03506 79 R----SEPA--------------F------G------------------KDQKKRFLHRYQ---HF-YFFPLLAL----- 107 (204)
T ss_pred e----cccc--------------c------c------------------cchHHHHHHHHH---HH-HHHHHHHH-----
Confidence 0 0000 0 0 000000000000 00 00011110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcc-CCCCcchhhhhhhc-ccCCCc-chHHHhcCcccchhhhhhcCCC
Q 040843 244 LAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHY-NSSEWDWLRGALST-VDRDYG-VLNKVFHNITDTHVAHHLFSTM 320 (379)
Q Consensus 244 ~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~-~~~~~~~~~~~l~T-~~~~~~-~l~~l~~~i~nyH~~HHlfP~i 320 (379)
.+.+|++|.++.+.+++++++++|..++++.. +++++||.+.|++| +|.+.+ |++++++|+ |||+||||||+|
T Consensus 108 ---~~~~~~~~~~~~~~~l~~~~~~~H~~~~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggl-n~qieHHLfP~i 183 (204)
T cd03506 108 ---LLLAFLVVQLAGGLWLAVVFQLNHFGMPVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGL-NYQIEHHLFPTM 183 (204)
T ss_pred ---HHHHHHHHHHHHhhhhheEeecccccccccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcch-hhHHHHhcCCCc
Confidence 05678999999999999999999998887764 45678999999885 455444 789999998 899999999999
Q ss_pred CccCHHHHHHHHHhhhhhc
Q 040843 321 PHYHAMEATIAMKPILGEY 339 (379)
Q Consensus 321 P~y~Lp~~~~~l~~~~~~~ 339 (379)
|+++||++++.+|+.|+|+
T Consensus 184 p~~~l~~~~~~v~~~~~~~ 202 (204)
T cd03506 184 PRHNYPKVAPLVRELCKKH 202 (204)
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 9999999999999888875
No 10
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=2e-32 Score=254.22 Aligned_cols=247 Identities=19% Similarity=0.236 Sum_probs=152.8
Q ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHH-HHHHHHHHHHHHHHhHhhccccccCCCCchhhHH
Q 040843 39 HCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWP-IYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDT 117 (379)
Q Consensus 39 ~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~-l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~ 117 (379)
++|++|+...+..++..++.+++++++. + .+|+..+ +++++.|+.+.++++++|||+|+++++++++|++
T Consensus 10 ~L~~~~~~~~~~~~~~v~~~~~~~~~l~--------~-~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~ 80 (289)
T cd03508 10 KLFGPDPLTKWVVLGVVLLQIITAYLLR--------D-SSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRL 80 (289)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHh--------c-CcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHH
Confidence 4789998887777666666655543211 1 2355444 4456677777899999999999999999999999
Q ss_pred HHHHHHhhcccchH-HhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 040843 118 VGLILHSALLVPYF-SWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSG 196 (379)
Q Consensus 118 ~G~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 196 (379)
+|.+++.+++.|+. .||..|+.||+++|+++.|||+.+.. ..++.+++.++... ... .+++...+...
T Consensus 81 ~g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~------~~~l~~~~~g~~~~---~~~--~~~~~~~rp~~ 149 (289)
T cd03508 81 FGIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEF------EGKLFSTVLGKAIW---VTL--QPFFYALRPLF 149 (289)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHH------HHHHHhCchHHHHH---HHH--HHHHHHhcccc
Confidence 99999999999998 59999999999999999999986522 23445666554321 100 11221111110
Q ss_pred CCCCCcccccCCCCCCCChhhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 040843 197 RPYDRFACHFDPKSPIYSDRERLQIYISDAGI-FAATYVLYRVAMAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPAL 275 (379)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~ 275 (379)
. .+ ++ ..+..+.+... +++.+++ ...+|++.++ |+++.++.+... | |..
T Consensus 150 -------~--~~-----~~--~~~~~~~n~~~~~~~~~~l---~~~~G~~~~l--yll~~~~~~~~~-------~--p~~ 199 (289)
T cd03508 150 -------V--RP-----KP--PTRLEVINIVVQITFDYLI---YYFFGWKSLA--YLLLGSFLGGGL-------H--PLA 199 (289)
T ss_pred -------c--CC-----Cc--chhHHHHHHHHHHHHHHHH---HHHhCcHHHH--HHHHHHHHHHhh-------c--ccc
Confidence 0 00 11 11222233333 2222222 2346776533 444443333321 1 111
Q ss_pred CccCCCCcchhhhhhhcccCC-CcchHHHhcCcccchhhhhhcCCCCccCHHHHHHHHHhhhhh
Q 040843 276 PHYNSSEWDWLRGALSTVDRD-YGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMKPILGE 338 (379)
Q Consensus 276 p~~~~~~~~~~~~~l~T~~~~-~~~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~l~~~~~~ 338 (379)
.....|.|+.......| ++ |+++|++++|+ |||.|||++|+||+|+||++++..++.+++
T Consensus 200 g~~i~Eh~~~~~~~~~t--~S~y~~~~~~~~n~-~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~~ 260 (289)
T cd03508 200 GHFISEHYVFTGKGQET--YSYYGPLNLLTFNV-GYHNEHHDFPYIPGTRLPKLRKIAPEFYDN 260 (289)
T ss_pred cccccccccccccCcCC--ccchHHHHHHhhcc-ChHHHhcCCCCCCcccHHHHHHHCHHHHhC
Confidence 11112333332211123 33 38899999998 899999999999999999999998766654
No 11
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=1.5e-32 Score=244.56 Aligned_cols=180 Identities=24% Similarity=0.358 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCccccccccc
Q 040843 81 AWPIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTKSE 160 (379)
Q Consensus 81 ~~~l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~ 160 (379)
-.+++.+++|+.+.++++++|||+|++++++|++|+++|.+++.+++.|+..||..|+.||++||++++|||+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~------ 96 (207)
T cd03514 23 PLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF------ 96 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH------
Confidence 34566777888999999999999999999999999999999998889999999999999999999999999973
Q ss_pred chhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040843 161 VPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAM 240 (379)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (379)
+... .. . ....++. ++....
T Consensus 97 -----------~~~~--------~~---------------------------------~-----~~~~~~~---~~~~~~ 116 (207)
T cd03514 97 -----------LLEW--------LV---------------------------------A-----RSLFITL---LVIAIL 116 (207)
T ss_pred -----------HHHH--------HH---------------------------------H-----HHHHHHH---HHHHHH
Confidence 0000 00 0 0000010 011111
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCCCCccCCCCcchhhhhhhcccCCCc-chHHHhcCcccchhhhhhcC
Q 040843 241 AKGLAWLICVYGVPLLIVNGFLV-LITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYG-VLNKVFHNITDTHVAHHLFS 318 (379)
Q Consensus 241 ~~g~~~~l~~~l~P~~~~~~~~~-~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~~-~l~~l~~~i~nyH~~HHlfP 318 (379)
..+.+.++++|++|.++.+.+++ +.++++|... .++++|+..+ + . .+ +++++++|+ |||.|||+||
T Consensus 117 ~~~~~~~~l~~~iP~l~~~~~l~~~~~~~~H~~~----~~~~~~~~~~----~--~-~~~l~~~l~~~~-nyH~~HHL~P 184 (207)
T cd03514 117 FGFLWELLNLWFLPALIVGTYLALFFDWLPHHPF----EETQRWDNSR----V--Y-PSKLLNPLIMGQ-NYHLVHHLWP 184 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheeeCccCC----CCccchhhhh----c--c-cchhHheeecCC-chhHHHhCCC
Confidence 23334567889999999999987 5779999731 1223343211 1 1 14 458888997 8999999999
Q ss_pred CCCccCHHHHHHHHHhhhhh
Q 040843 319 TMPHYHAMEATIAMKPILGE 338 (379)
Q Consensus 319 ~iP~y~Lp~~~~~l~~~~~~ 338 (379)
+||+||||++++.+|+++.+
T Consensus 185 ~IP~y~Lp~a~~~~~~~~~~ 204 (207)
T cd03514 185 SIPWYRYPEAYYANKPLLDA 204 (207)
T ss_pred CCchhhhHHHHHHhHHHHhh
Confidence 99999999999999977654
No 12
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.98 E-value=6e-31 Score=235.26 Aligned_cols=192 Identities=20% Similarity=0.225 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhccccccCC-CCchhhHHHHHHHH-hhcccchHHhHHhhhccccCCCCCCCCCcccc
Q 040843 78 AYLAWPIYWIFQGCVLTGVWVIAHECGHHAFS-DYQWVDDTVGLILH-SALLVPYFSWKYSHRRHHSNTASLERDEVFVP 155 (379)
Q Consensus 78 ~~~~~~l~~v~~G~~~~~l~~l~Hda~H~~~~-~~~~~N~~~G~l~~-~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p 155 (379)
++.+.+++++++|+.+.++++++|||+|++++ +++++|+++|.+++ ++.+.|+..||..|+.||+++|++ +|||+.+
T Consensus 28 ~~~~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~ 106 (225)
T cd03513 28 SLLLIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHK 106 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCC
Confidence 34445556788999999999999999999999 79999999999984 567899999999999999999998 9999976
Q ss_pred cccccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 040843 156 KTKSEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVL 235 (379)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (379)
.++. +++... + .++.+ + ++ ..+. +.+.+++ .+
T Consensus 107 ~~~~----------~~~~wy---------~---~f~~~------------y------~~---~~ql----i~l~ivw-~~ 138 (225)
T cd03513 107 GNPS----------GFLPWY---------L---HFMSN------------Y------FG---WRQL----AILAAVW-LL 138 (225)
T ss_pred CCCC----------ChHHHH---------H---HHHHh------------H------hH---HHHH----HHHHHHH-HH
Confidence 4322 111110 0 00000 0 00 1111 1111111 11
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCCCCccCCCCcchhhhhhhcccCCC-cchHHH-hcCcccchh
Q 040843 236 YRVAMAKGLAWLICVYGVPLLIVNGFLVLI-TYLQHTHPALPHYNSSEWDWLRGALSTVDRDY-GVLNKV-FHNITDTHV 312 (379)
Q Consensus 236 ~~~~~~~g~~~~l~~~l~P~~~~~~~~~~~-~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~-~~l~~l-~~~i~nyH~ 312 (379)
+......+...++++|++|.+++++.+..+ +++.|..++.|..+ +. ++ + +.++ .|++.+ |.++ +||.
T Consensus 139 ~l~~~~~~~~~~~~~~~~P~l~~~~~l~~f~T~lpH~~~~~~~~~---~~--~a--~--~~~~~~~~~~l~c~~f-gyH~ 208 (225)
T cd03513 139 LLGLGSAPLANLLLFWALPLILSSLQLFYFGTWLPHRPGRGGFAD---RH--RA--R--SSRLSPVLSFLTCYHF-GYHH 208 (225)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC---cc--cc--e--ecCccHHHHHHHHHhc-Ccch
Confidence 111111355668999999999999988755 89999865544422 11 11 1 2333 478885 5888 6999
Q ss_pred hhhhcCCCCccCHHHH
Q 040843 313 AHHLFSTMPHYHAMEA 328 (379)
Q Consensus 313 ~HHlfP~iP~y~Lp~~ 328 (379)
|||+||+||||+||++
T Consensus 209 eHH~fP~~Pw~~Lp~~ 224 (225)
T cd03513 209 EHHLSPSTPWWRLPEL 224 (225)
T ss_pred hhccCCCCCcccCccc
Confidence 9999999999999986
No 13
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=2.5e-30 Score=240.79 Aligned_cols=221 Identities=20% Similarity=0.246 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCC--CCCCCCcccccccccc
Q 040843 84 IYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTA--SLERDEVFVPKTKSEV 161 (379)
Q Consensus 84 l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn--~~~~Dpd~~p~~~~~~ 161 (379)
++.++.|+.....+.++|||+|++++|+|++|+++|.++ ..++.|+..||.+|+.||++|| ++++|||....+..++
T Consensus 29 ~~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~ 107 (288)
T cd03509 29 LATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQW 107 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHH
Confidence 456667777777789999999999999999999999885 3556999999999999999999 4468999754332221
Q ss_pred hhhhhhhcCchhHHHHHHHHHHHHH----HHHHHHHhcCCCCCCcccccCCCCCCCChhhh--hHHHHHHHHHHHHHHHH
Q 040843 162 PFYSKYFNNPPGRALTLLVTLTLGW----PLYLALNVSGRPYDRFACHFDPKSPIYSDRER--LQIYISDAGIFAATYVL 235 (379)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 235 (379)
+ + ..++.+......+..++. |.+.+...... + .+ .+.++++ .+++...++.++ .++
T Consensus 108 ~---~--~~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~~---------~-~~-~~~~~~~~~~~~~~~~~~~~~--~~l 169 (288)
T cd03509 108 A---R--LPRWQRALLRANNTLLGRLILGPPLGLIAFARD---------E-FR-ALRAGDRAALRAWLLHAALLA--PLL 169 (288)
T ss_pred h---h--CcHHHHHHHHHhhcchhHHhhhhHHHHHHHHHH---------H-HH-HhccccHHHHHHHHHHHHHHH--HHH
Confidence 1 1 011222222122222221 22222111100 0 00 0112222 222222222211 111
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH-HHHhhhcccCCCCCCccCCCCcchhhhhhhcccCCCc-chHHHhcCcccchhh
Q 040843 236 YRVAMAKGLAWLICVYGVPLLIVNGF-LVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYG-VLNKVFHNITDTHVA 313 (379)
Q Consensus 236 ~~~~~~~g~~~~l~~~l~P~~~~~~~-~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~~-~l~~l~~~i~nyH~~ 313 (379)
..+....|+.. .+|++|....+.. ..+.++.||.... +.+ + +|+..+.+ +++++++|+ |||.|
T Consensus 170 ~~~~~~~~~~~--~~~~l~~~~la~~~~~~~~~~Eh~~~~----~~~-------~-rs~~~~~~~~~~~l~~ni-nyH~~ 234 (288)
T cd03509 170 AWLQLSAGIPW--WAYLLAVYYPALSLAKIRTFLEHRAHE----RPR-------G-RTVINEAGGPLRLLFLNN-NLHVV 234 (288)
T ss_pred HHHHHHhhHHH--HHHHHHHHHHHHHHHhhchHhhccCCC----Ccc-------C-CceeeeCcHHHHHHHhcC-CchHh
Confidence 11111223322 2334555554444 4678899997421 101 1 22212223 578899998 89999
Q ss_pred hhhcCCCCccCHHHHHHHHHhhhhh
Q 040843 314 HHLFSTMPHYHAMEATIAMKPILGE 338 (379)
Q Consensus 314 HHlfP~iP~y~Lp~~~~~l~~~~~~ 338 (379)
||++|+||+|+||++++.+++.+++
T Consensus 235 HH~~P~vP~y~Lp~~h~~~~~~~~~ 259 (288)
T cd03509 235 HHDLPTLPWYDLPRLYRARRDAYLR 259 (288)
T ss_pred hcCCCCCCcccHHHHHHHhHHHHhh
Confidence 9999999999999999999987665
No 14
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.97 E-value=6.9e-30 Score=240.05 Aligned_cols=232 Identities=15% Similarity=0.172 Sum_probs=136.0
Q ss_pred hHHHHHH-HHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHHhhcccchH-HhHHhhhccccCCCCCCCCCcccc
Q 040843 78 AYLAWPI-YWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYF-SWKYSHRRHHSNTASLERDEVFVP 155 (379)
Q Consensus 78 ~~~~~~l-~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p 155 (379)
+|+..++ ++++.|+...++++++|||+|+++|+++++|+++|.+++.+++.|+. +||..|+.||++||+++.|||...
T Consensus 69 ~w~~~l~~a~~~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t 148 (323)
T PLN02579 69 GWPKILLVAYFFGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPS 148 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCc
Confidence 4665555 56777888899999999999999999999999999999888999997 699999999999999999999632
Q ss_pred cccccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHH
Q 040843 156 KTKSEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVL 235 (379)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (379)
..+ . +..+++..+++. ..++ ++++..+ .. . +.+ .+..++. . .++++.+.+.
T Consensus 149 -~~E-~----~l~~~~~~~~~~----~~~~-~~f~~~r-p~------~--~~~-----~~~~~~~-~-in~~~~~~~~-- 199 (323)
T PLN02579 149 -QGE-A----RLVRNTLSKIVW----VFLQ-LFFYALR-PL------F--VNP-----KPPGLWE-F-INLLTQIAFD-- 199 (323)
T ss_pred -hhh-H----HHHHHHHHHHHH----HHHH-HHHHHhh-HH------h--hcc-----CCchHHH-H-HHHHHHHHHH--
Confidence 222 1 222344333221 0111 2222211 00 0 011 1111222 1 2333322221
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCcchhhhhhhcccCCCcchHHHhcCcccchhhhh
Q 040843 236 YRVAMAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHH 315 (379)
Q Consensus 236 ~~~~~~~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~~~l~~l~~~i~nyH~~HH 315 (379)
.++....|+..++.+ ++|.+++ .|.+|..++...+.+.....| .|. +-||++|++++|+ |||.|||
T Consensus 200 ~~l~~~~G~~~llyl-~~~~~~~----------~~lhp~~g~~~~ehy~~~~~~-ety-syyg~ln~l~~Ni-gYH~eHH 265 (323)
T PLN02579 200 AALVYFAGWKSLAYL-ILSTFLG----------GGLHPMAGHFISEHYVFNPGQ-ETY-SYYGPLNLLTWNV-GYHNEHH 265 (323)
T ss_pred HHHHHHHCHHHHHHH-HHHHHHh----------cccccccceeeccceeccCCC-Cce-eehhHHHHHhhcc-cccHhhc
Confidence 122335677764422 2222111 122233332112222222221 131 2238999999999 8999999
Q ss_pred hcCCCCccCHHHHHHHHHhhhhhccccCCchHHHHHHHH
Q 040843 316 LFSTMPHYHAMEATIAMKPILGEYYQFDGMPFYKAAWRE 354 (379)
Q Consensus 316 lfP~iP~y~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 354 (379)
+||+||+|+||++++...+-+. ..+. -.|+.+.+++-
T Consensus 266 ~fP~IP~~~Lp~l~~~~pe~y~-~l~~-~~sw~~~~~~f 302 (323)
T PLN02579 266 DFPRIPGSKLHKVKEIAPEYYD-NLKS-YKSWSQVIYMY 302 (323)
T ss_pred CCCCCchhhHHHHHHhCHHHHh-CCCC-cCcHHHHHHHH
Confidence 9999999999998875543322 1222 34577777774
No 15
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.3e-30 Score=226.02 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHH-HHhhcccchHHhH
Q 040843 56 LSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLI-LHSALLVPYFSWK 134 (379)
Q Consensus 56 ~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l-~~~~~~~p~~~wr 134 (379)
+++++++++++. + .+ +|++.+++++++|.++.++++++|||+|++++|++++|+++|.+ ++.|++.|+..||
T Consensus 2 w~~i~~~~~~~~-~---~~---~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r 74 (175)
T cd03510 2 WLVIAAAVALAL-A---WP---NWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYR 74 (175)
T ss_pred hHHHHHHHHHHH-H---hc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHH
Confidence 456666555543 2 22 47788888999999999999999999999999999999999965 5678899999999
Q ss_pred HhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCC
Q 040843 135 YSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYS 214 (379)
Q Consensus 135 ~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (379)
..|+.||+++|+ ++|||+.
T Consensus 75 ~~H~~HH~~~~~-~~Dpd~~------------------------------------------------------------ 93 (175)
T cd03510 75 RSHLKHHRHLGT-EDDPDLA------------------------------------------------------------ 93 (175)
T ss_pred HHHHHHhCccCC-CCCCcHH------------------------------------------------------------
Confidence 999999999998 7898751
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHhhhcccCCCCCCccCCCCcchhhhhhhcc
Q 040843 215 DRERLQIYISDAGIFAATYVLYRVAMAKGLAWLICVYGVPLLIVNGFL-VLITYLQHTHPALPHYNSSEWDWLRGALSTV 293 (379)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l~P~~~~~~~~-~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~ 293 (379)
.++++|++|+++....+ .++.+.||...+ .. ++.+. ...+|
T Consensus 94 -------------------------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~~--~~--~~~~~--~~tr~- 135 (175)
T cd03510 94 -------------------------------LYLLLWLVPLLTVFPLIGRIREIAEHAGVP--AD--EDPDA--RNTRT- 135 (175)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CC--Ccchh--hcCcc-
Confidence 12345677877777755 567889998432 11 11110 11122
Q ss_pred cCCCcchHH-Hh--cCcccchhhhhhcCCCCccCHHHHHHHH
Q 040843 294 DRDYGVLNK-VF--HNITDTHVAHHLFSTMPHYHAMEATIAM 332 (379)
Q Consensus 294 ~~~~~~l~~-l~--~~i~nyH~~HHlfP~iP~y~Lp~~~~~l 332 (379)
...+|++. ++ .|+ |||.|||++|+||+|+|||+|+.+
T Consensus 136 -~~~~~~~r~l~~p~~~-~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 136 -TFGGWIERLLFAPHNI-NYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred -ccccHHHHHHHcccCC-cHHHHHhCCcCCchhhHHHHHHhC
Confidence 22267664 44 477 899999999999999999999864
No 16
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=9.7e-31 Score=239.77 Aligned_cols=245 Identities=24% Similarity=0.349 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCccccccc
Q 040843 79 YLAWPIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVFVPKTK 158 (379)
Q Consensus 79 ~~~~~l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~~ 158 (379)
|++.+++.++.|..+.+++.++|||+|+++++++++|+++|.+++.+++.|+..||..|+.||+++|++++|||..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 45566778889999999999999999999999999999999999999899999999999999999999988999754310
Q ss_pred ccchhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHH
Q 040843 159 SEVPFYSKYFNNPPGRALTLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRV 238 (379)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 238 (379)
......... ....+++............+...... .......+...+.. ........+...++...
T Consensus 83 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (257)
T PF00487_consen 83 PPHQPWRPL--FSYRRFLFRFLLSLFFPIWYFIFFFR-----------KRRMRRRRKRPRRY-LILAALLLALLLALLAA 148 (257)
T ss_pred hhhhhhhhh--hhhhhccccccccccccchhhhhhcc-----------ccccccccccchhH-HHHHHHhhhhhhhhhhh
Confidence 000000000 00000000000000000000000000 00000000000011 11112222222222222
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCcchhhhhhhc-ccCCC-cchHHHhcCcccchhhhhh
Q 040843 239 AMAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALST-VDRDY-GVLNKVFHNITDTHVAHHL 316 (379)
Q Consensus 239 ~~~~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T-~~~~~-~~l~~l~~~i~nyH~~HHl 316 (379)
+...++...+++|++|.++...++.+++++||...+. ...++..++...++.+ .+... .+++++++|+ |||+|||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~H~~HHl 226 (257)
T PF00487_consen 149 LFFFSPWWALLLFLLPFLIGSFFLAFVTYLEHYGLDP-DDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGL-NYHIEHHL 226 (257)
T ss_pred hcccccccchhHHHHHHhHHHHHHHHhhHHhhhcccc-cccccccceecccccccccccCchhhhccccCC-CChHHhCC
Confidence 2233445567888899999999998888999986432 1122333444445443 23222 3678899998 89999999
Q ss_pred cCCCCccCHHHHHHHHHhhhhhc
Q 040843 317 FSTMPHYHAMEATIAMKPILGEY 339 (379)
Q Consensus 317 fP~iP~y~Lp~~~~~l~~~~~~~ 339 (379)
||+||+++||++++.+++.++++
T Consensus 227 ~P~vp~~~l~~~~~~~~~~~~~~ 249 (257)
T PF00487_consen 227 FPGVPWYNLPEAHPILKEVCPEY 249 (257)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988877
No 17
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.96 E-value=3e-28 Score=228.11 Aligned_cols=301 Identities=13% Similarity=0.162 Sum_probs=178.4
Q ss_pred CCCHHHHHHhcCC-CCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHHhHhhccc
Q 040843 26 PFTLSQIKKAIPP-HCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVLTGVWVIAHECG 104 (379)
Q Consensus 26 ~~~~~~ir~~lp~-~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~~~l~~l~Hda~ 104 (379)
..+++++|+++++ +++..++.-.+...+.+++..++++.+. +.+.+++++++|.++++.++++||.+
T Consensus 98 ~~~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i------------~~~~l~~a~Ll~~a~~Qs~~l~Hd~g 165 (430)
T KOG4232|consen 98 NESFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLLI------------YLLSLISAVLLGLAWAQSGWLQHDYG 165 (430)
T ss_pred hHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4578889999986 6677776655554444444443333221 22367789999999999999999999
Q ss_pred cccCCCCchhhHHHHHHHHhh-cccchHHhHHhhhccccCCCCCCCCCcccccc---ccc-----chhhh-hhhcCchhH
Q 040843 105 HHAFSDYQWVDDTVGLILHSA-LLVPYFSWKYSHRRHHSNTASLERDEVFVPKT---KSE-----VPFYS-KYFNNPPGR 174 (379)
Q Consensus 105 H~~~~~~~~~N~~~G~l~~~~-~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~p~~---~~~-----~~~~~-~~~~~~~~~ 174 (379)
|.+.+|++++|+++..+.+.. .+.|-.+|+..|+.||+++|..++|||....+ ... .+... ++...+.+.
T Consensus 166 H~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh 245 (430)
T KOG4232|consen 166 HLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQH 245 (430)
T ss_pred cccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccce
Confidence 999999999999999887765 56999999999999999999999999973222 000 00000 000011111
Q ss_pred HH------HHHHHHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 040843 175 AL------TLLVTLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGIFAATYVLYRVAMAKGLAWLI 248 (379)
Q Consensus 175 ~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l 248 (379)
+. .++.+..++.. ..+.... .. .+.+..+.. ...+.+.+..........+. .+
T Consensus 246 ~yf~~~~~p~l~~~~~~~~-~~~~~~~-------~~-------~w~Dl~~~~-~~~~~~~i~~~~~~~~~~~~-----~L 304 (430)
T KOG4232|consen 246 LYFFLIGPPFLRLMWFQQS-IIFVQTN-------LL-------LWYDLYWPD-RFYLRAFIYLHWGWGLLLLS-----CL 304 (430)
T ss_pred EEEEeccchHHHHHHHHHH-HHHHHhH-------HH-------HHHHhhhhh-hHHHhhHHHhcchhhhHHHH-----hc
Confidence 00 00111111210 0000000 00 000000000 00111111111000000000 01
Q ss_pred HHHHHHHHHHHHHHHHh-hhcccCCCCCCccCCCCcchhhhhhhc-ccCCC-cchHHHhcCcccchhhhhhcCCCCccCH
Q 040843 249 CVYGVPLLIVNGFLVLI-TYLQHTHPALPHYNSSEWDWLRGALST-VDRDY-GVLNKVFHNITDTHVAHHLFSTMPHYHA 325 (379)
Q Consensus 249 ~~~l~P~~~~~~~~~~~-~~~~H~~~~~p~~~~~~~~~~~~~l~T-~~~~~-~~l~~l~~~i~nyH~~HHlfP~iP~y~L 325 (379)
..|.+=.+.+ .+..++ ..+.|..+++....+...||...|+.| +|+.. .|++|+.++. |||+||||||+||++||
T Consensus 305 ~~w~~r~~~~-~~s~~v~l~~nH~~~~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghl-n~qieHHLFPtmpr~nL 382 (430)
T KOG4232|consen 305 PNWPIRFLFS-SWSFWVTLTMNHIDPEIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHL-NFQIEHHLFPTMPRHNL 382 (430)
T ss_pred cCchHHHHHH-HHHHHHHHhhhccchhhccCCcchhhHHHHHHhhccccCchhHHHHHHhhh-hhhHHhhcCCCCCccch
Confidence 1111111112 222222 366787655543322236788888874 46655 4889999987 89999999999999999
Q ss_pred HHHHHHHHhhhhhc-cccCCchHHHHHHHHhhcCEee
Q 040843 326 MEATIAMKPILGEY-YQFDGMPFYKAAWREAKECLYV 361 (379)
Q Consensus 326 p~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~ 361 (379)
+++.+.+++.|+++ ..+.+.++++++++..++.+..
T Consensus 383 ~~v~P~Vke~c~k~~l~y~~~~~~~~~~~~~~~lr~~ 419 (430)
T KOG4232|consen 383 NKVAPLVKELCKKHGLPYREKPHFEALGDIIQQLRNS 419 (430)
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHhhhc
Confidence 99999999999998 6777888999999888777643
No 18
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.89 E-value=3e-22 Score=174.77 Aligned_cols=253 Identities=19% Similarity=0.222 Sum_probs=155.2
Q ss_pred CCHHHHHHhcCC--CCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHH-HHHHHHHHHHHHHhHhhcc
Q 040843 27 FTLSQIKKAIPP--HCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPI-YWIFQGCVLTGVWVIAHEC 103 (379)
Q Consensus 27 ~~~~~ir~~lp~--~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l-~~v~~G~~~~~l~~l~Hda 103 (379)
=.++||.++.|+ .+|.+|+..-+..+..-++-+.+++ . +.+ ++|...+. +.++-|+.-+.+....||-
T Consensus 21 sRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~~-----l---l~d-l~W~~il~~AYf~gg~iNhsl~LAIHei 91 (324)
T KOG2987|consen 21 SRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAAY-----L---LRD-LDWKWILFIAYFFGGFINHSLTLAIHEI 91 (324)
T ss_pred hHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHHH-----H---Hhc-ccHHHHHHHHHHhhhhhchhHHHHHHHh
Confidence 467899999994 7899988765544333223222222 1 111 34544444 4566778889999999999
Q ss_pred ccccCCCC--chhhHHHHHHHHhhcccchH-HhHHhhhccccCCCCCCCCCcccccccccchhhhhhhcCchhHHHHHHH
Q 040843 104 GHHAFSDY--QWVDDTVGLILHSALLVPYF-SWKYSHRRHHSNTASLERDEVFVPKTKSEVPFYSKYFNNPPGRALTLLV 180 (379)
Q Consensus 104 ~H~~~~~~--~~~N~~~G~l~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (379)
+|+..|++ +-.|+++|.++.+|+++|++ ++|..|..||+|.+.++-|-|..... + ..+..+..+++++..+
T Consensus 92 SHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~-E-----a~~f~t~~~K~iw~~l 165 (324)
T KOG2987|consen 92 SHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRF-E-----AWLFDTAFGKLIWVTL 165 (324)
T ss_pred hhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchh-h-----eehhhhhhHHHHHHHH
Confidence 99999987 78999999999999999986 89999999999999999998873322 2 1334566777766545
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040843 181 TLTLGWPLYLALNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGI-FAATYVLYRVAMAKGLAWLICVYGVPLLIVN 259 (379)
Q Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~l~~~l~P~~~~~ 259 (379)
|.++ |.+.-. -..|+ ....+-..+..+ +.+..++ ..++||..+. +++.+
T Consensus 166 QpfF----Y~fRPl----------~i~pk-------p~t~me~iN~iiQ~~fd~li---~~f~G~ksl~------Yll~~ 215 (324)
T KOG2987|consen 166 QPFF----YAFRPL----------FIYPK-------PPTDMEFINTIIQLSFDLLI---VYFFGWKSLA------YLLAS 215 (324)
T ss_pred HHHH----Hhhhhh----------eecCC-------CchHHHHHHHHHHHHHHHHH---HHHHhHHHHH------HHHHH
Confidence 5221 221110 01221 111221222222 3332222 2457887642 22222
Q ss_pred HHHHHhhhcccCCCCCCccCCCCcchhhhhhhcccCC-CcchHHHhcCcccchhhhhhcCCCCccCHHHHHHHHH
Q 040843 260 GFLVLITYLQHTHPALPHYNSSEWDWLRGALSTVDRD-YGVLNKVFHNITDTHVAHHLFSTMPHYHAMEATIAMK 333 (379)
Q Consensus 260 ~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~-~~~l~~l~~~i~nyH~~HHlfP~iP~y~Lp~~~~~l~ 333 (379)
..++.. -| |..-+.-.+...+.++| +| .+ ||.+|++..|+ +||+|||-||.||..+||++.++..
T Consensus 216 s~lg~g---LH--P~aGHFisEHY~f~k~~-ET--ySYYGplN~~tfNv-GYH~EHHDFP~Ipg~~Lp~Vr~iAp 281 (324)
T KOG2987|consen 216 SFLGMG---LH--PIAGHFISEHYMFKKGQ-ET--YSYYGPLNLLTFNV-GYHVEHHDFPYIPGSRLPKVREIAP 281 (324)
T ss_pred HHHcCC---CC--cccchhhHhhhhhcCCc-cc--eeeecceeeEEEec-ccccccccCCCCCccccHHHHHhhH
Confidence 332221 12 11111111222333332 34 33 48999999999 6999999999999999999987665
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.80 E-value=2e-18 Score=162.92 Aligned_cols=211 Identities=20% Similarity=0.193 Sum_probs=122.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhh-ccccCCCCCCCCCccc
Q 040843 77 FAYLAWPIYWIFQGCVLTGV-WVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHR-RHHSNTASLERDEVFV 154 (379)
Q Consensus 77 ~~~~~~~l~~v~~G~~~~~l-~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~-~HH~~tn~~~~Dpd~~ 154 (379)
.+++..+.+.+.+|+...++ ...+||++| |++++|+++|.++..+. ++..|+..|+ .||++++++ +|||..
T Consensus 67 ~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~tp-~DP~ta 139 (314)
T cd03512 67 LSALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVATP-EDPATA 139 (314)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCCCC-CCcccc
Confidence 45667777788888877654 458888888 56999999999876544 4555999999 899999984 899874
Q ss_pred ccccccchhhhhhhcCchhHHHHHHHHHHHH-----HHHHHH-HHhcCCCCCCcccccCCCCCCCChhhhhHHHHHHHHH
Q 040843 155 PKTKSEVPFYSKYFNNPPGRALTLLVTLTLG-----WPLYLA-LNVSGRPYDRFACHFDPKSPIYSDRERLQIYISDAGI 228 (379)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (379)
...+.-+++. .+...| |-...- ....+ .| .... +..++. .
T Consensus 140 r~ge~~y~f~---------------~r~~~g~~~~aw~~e~~rl~~~g----------~~---~~~~--~n~~l~----~ 185 (314)
T cd03512 140 RRGESFYRFL---------------PRALVGSFRSAWKLEKKRLRRKG----------RS---PWSP--RNEVLR----Y 185 (314)
T ss_pred ccCccHHHHH---------------HHHHHHHHHHHHHHHHHHHHhcC----------CC---CCcc--chHHHH----H
Confidence 3221111111 111111 111000 00000 00 0110 111111 1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCcchhhhhhh-cccCCCcchHHHhcCc
Q 040843 229 FAATYVLYRVAMAKGLAWLICVYGVPLLIVNGFLVLITYLQHTHPALPHYNSSEWDWLRGALS-TVDRDYGVLNKVFHNI 307 (379)
Q Consensus 229 ~~~~~~l~~~~~~~g~~~~l~~~l~P~~~~~~~~~~~~~~~H~~~~~p~~~~~~~~~~~~~l~-T~~~~~~~l~~l~~~i 307 (379)
.++.++++.++..++.+..+.++++|.+++...+..+.|+||.+ +....+++-.+.+.+-. +-|.+....|+++.|+
T Consensus 186 ~~~~~a~~~~~~~~~g~~~l~~~l~~~~~g~~~l~~~nY~EHyG--L~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl 263 (314)
T cd03512 186 LALAVALLALAAALGGLAGLLFLLIQAFYAKSLLELVNYIEHYG--LLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNL 263 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CccccCCCCccccCCCccCcCcCcHHHHHHHHhc
Confidence 11222233333334444456778889888888889999999984 33221111111111111 1122212467788997
Q ss_pred ccchhhhhhcCCCCccCHHHHHHH
Q 040843 308 TDTHVAHHLFSTMPHYHAMEATIA 331 (379)
Q Consensus 308 ~nyH~~HHlfP~iP~y~Lp~~~~~ 331 (379)
++|.+||.+|++|++.|+...+.
T Consensus 264 -~rHsdHH~~p~~~y~~L~~~~~~ 286 (314)
T cd03512 264 -QRHSDHHAHPTRPYQALRPFPEA 286 (314)
T ss_pred -chhhhhccCCCCchhhccCCccC
Confidence 89999999999999999988764
No 20
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.73 E-value=7.8e-18 Score=137.57 Aligned_cols=59 Identities=39% Similarity=0.621 Sum_probs=55.4
Q ss_pred HHHhHhhccccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCcc
Q 040843 95 GVWVIAHECGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEVF 153 (379)
Q Consensus 95 ~l~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~ 153 (379)
++..++|||+|+++++++++|++++.+++.+++.|+..|+..|+.||+++|++++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 77889999999999999999999999999988899999999999999999998788864
No 21
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=98.59 E-value=6.1e-08 Score=77.71 Aligned_cols=47 Identities=47% Similarity=0.778 Sum_probs=42.0
Q ss_pred cCCCCCCCCCCCHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHH
Q 040843 17 IQPAPHTKPPFTLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFY 63 (379)
Q Consensus 17 ~~~~~~~~~~~~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~ 63 (379)
.+-.|.++|++|++|||++||++||++|++|++.|+++|++++++++
T Consensus 89 ~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 89 EEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred cccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 44457789999999999999999999999999999999999987653
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.53 E-value=1.7e-06 Score=77.83 Aligned_cols=52 Identities=25% Similarity=0.476 Sum_probs=40.4
Q ss_pred hhcc-ccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCCc
Q 040843 100 AHEC-GHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDEV 152 (379)
Q Consensus 100 ~Hda-~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 152 (379)
-|-| +|+++.-.+++..++.....+-...|...|-..|..||++|.+ +.||-
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tDT-d~DPh 118 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKTDT-DQDPH 118 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcccCC-CCCCC
Confidence 4544 6888888888888876555445668889999999999999954 57873
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.36 E-value=4.3e-05 Score=71.49 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=37.3
Q ss_pred cccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCC
Q 040843 103 CGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDE 151 (379)
Q Consensus 103 a~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 151 (379)
-+|+++.-++++..++..+.......+...|...|..||+++.+ ++||
T Consensus 80 ~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt-~~DP 127 (299)
T PLN02220 80 LAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDS-DRDP 127 (299)
T ss_pred HHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CCCc
Confidence 47888877888877765554444557888899999999999986 4687
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.62 E-value=0.0011 Score=61.24 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=37.8
Q ss_pred cccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCC
Q 040843 103 CGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDE 151 (379)
Q Consensus 103 a~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 151 (379)
=+|.++.-++++..++.......+..+.-.|-..|..||++|.+ |+||
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdT-D~DP 138 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDT-DADP 138 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhcccccc-CCCC
Confidence 57888888888888876555444556666799999999999987 5888
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=97.39 E-value=0.0034 Score=54.28 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=39.5
Q ss_pred cccccCCCCchhhHHHHHHHHhhcccchHHhHHhhhccccCCCCCCCCC
Q 040843 103 CGHHAFSDYQWVDDTVGLILHSALLVPYFSWKYSHRRHHSNTASLERDE 151 (379)
Q Consensus 103 a~H~~~~~~~~~N~~~G~l~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dp 151 (379)
.+|+++.-++++..++..+.......|...|...|..||+++.++ +||
T Consensus 27 ~aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~-~DP 74 (178)
T cd03505 27 WAHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTD-GDP 74 (178)
T ss_pred HhhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCC-CCC
Confidence 368999888888888876665555688889999999999999864 686
No 26
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=40.37 E-value=56 Score=30.69 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=12.9
Q ss_pred cchhhhhhcCCCCccC
Q 040843 309 DTHVAHHLFSTMPHYH 324 (379)
Q Consensus 309 nyH~~HHlfP~iP~y~ 324 (379)
.+|.+||.+++.+...
T Consensus 99 ~~H~~HH~~~n~~~~D 114 (289)
T cd03508 99 KYHLEHHRYLGEDGLD 114 (289)
T ss_pred HHHHHhccCCCCCCCC
Confidence 5899999999886543
No 27
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=38.33 E-value=87 Score=28.17 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCCHHHHHHhcCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHH
Q 040843 26 PFTLSQIKKAIPPHCFKRSLLRSFSYVVYDLSFSFLFYYTATNYFHLLPSPFAYLAWPIYWIFQGCVL 93 (379)
Q Consensus 26 ~~~~~~ir~~lp~~~f~~~~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~v~~G~~~ 93 (379)
+-++++|++...- .-+.|++-.++.++.-++.++++..+.+ . .. +|+++++.+++.|+..
T Consensus 7 ~~~~~Qi~q~y~~-trk~dp~l~~~ml~a~l~~~~v~v~ig~-l---~~---~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 7 PGRRKQIWQAYKM-TRKEDPKLPWLMLGAFLGPIAVFVLIGL-L---FG---SWWYWLIIGILLGLLA 66 (224)
T ss_pred chHHHHHHHHHHH-HHHHCcchHHHHHHHHHHHHHHHHHHHH-H---Hc---cHHHHHHHHHHHHHHH
Confidence 4467777775541 0134555555555544444444444443 1 12 4666667677776643
No 28
>PRK15358 pathogenicity island 2 effector protein SseF; Provisional
Probab=32.90 E-value=1.6e+02 Score=25.72 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=17.4
Q ss_pred ccccccCCCCCCCCCCCHHHHHH
Q 040843 12 KKESLIQPAPHTKPPFTLSQIKK 34 (379)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ir~ 34 (379)
|.+.+....|..+.-+|.++||+
T Consensus 10 ppeipap~tp~~pvlltpeqi~q 32 (239)
T PRK15358 10 PPEIPAPGTPAAPVLLTPEQIRQ 32 (239)
T ss_pred CCCCCCCCCCCCCeecCHHHHHH
Confidence 45666777777766789999987
No 29
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=31.65 E-value=3.7e+02 Score=25.14 Aligned_cols=16 Identities=25% Similarity=0.063 Sum_probs=12.5
Q ss_pred HhhhccccCCCCCCCC
Q 040843 135 YSHRRHHSNTASLERD 150 (379)
Q Consensus 135 ~~H~~HH~~tn~~~~D 150 (379)
..|..||.++..+-.+
T Consensus 230 nyH~~HH~~P~vP~y~ 245 (288)
T cd03509 230 NLHVVHHDLPTLPWYD 245 (288)
T ss_pred CchHhhcCCCCCCccc
Confidence 4699999999887543
No 30
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=29.88 E-value=1.8e+02 Score=22.03 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=8.9
Q ss_pred ccccccCCCCCCCCCCC
Q 040843 12 KKESLIQPAPHTKPPFT 28 (379)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (379)
|||+.+++...++++-+
T Consensus 2 PkSk~rKk~~~~~~~~~ 18 (87)
T PF06781_consen 2 PKSKVRKKAAYTPPPAS 18 (87)
T ss_pred CCccccccccCCCCCcc
Confidence 45666555555444433
No 31
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.29 E-value=2.7e+02 Score=21.61 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=5.8
Q ss_pred ccChHHHHHH
Q 040843 42 KRSLLRSFSY 51 (379)
Q Consensus 42 ~~~~~~~~~~ 51 (379)
+++.++++..
T Consensus 35 ~~~~~~~l~~ 44 (100)
T TIGR02230 35 TRSIWEGLGM 44 (100)
T ss_pred CCcHHHHHHH
Confidence 4566666644
No 32
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=26.06 E-value=2e+02 Score=26.64 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.3
Q ss_pred cchhhhhhcCCCCc
Q 040843 309 DTHVAHHLFSTMPH 322 (379)
Q Consensus 309 nyH~~HHlfP~iP~ 322 (379)
..|..||.+++.|-
T Consensus 97 ~~H~~HH~~~~~~~ 110 (285)
T cd03511 97 WSHARHHRYTQIPG 110 (285)
T ss_pred HHHHHHhcCcCCCC
Confidence 47899999997763
No 33
>PF13239 2TM: 2TM domain
Probab=25.90 E-value=2.7e+02 Score=20.42 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhhc
Q 040843 78 AYLAWPIYWIFQGCVLTGVWVIAHE 102 (379)
Q Consensus 78 ~~~~~~l~~v~~G~~~~~l~~l~Hd 102 (379)
.|+++++.+..+|+..+++.+.+.+
T Consensus 41 ~W~~~~~~~Wgi~L~~h~~~vf~~~ 65 (83)
T PF13239_consen 41 FWPLWPILGWGIGLAIHALKVFGSK 65 (83)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccc
Confidence 4778888888888888888876666
No 34
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=24.72 E-value=3.1e+02 Score=20.72 Aligned_cols=15 Identities=13% Similarity=0.084 Sum_probs=9.0
Q ss_pred ccccccCCCCCCCCC
Q 040843 12 KKESLIQPAPHTKPP 26 (379)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (379)
|||+.+++...++++
T Consensus 2 PkSK~RKk~~~t~~~ 16 (87)
T PRK00159 2 PKSKVRKKNDFTVSS 16 (87)
T ss_pred CCccccCCCCCCCCC
Confidence 466666665555555
No 35
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=24.41 E-value=3e+02 Score=27.22 Aligned_cols=54 Identities=20% Similarity=0.317 Sum_probs=26.4
Q ss_pred HHhhhcccCCCCCCccCCCCcchhhhhhhcccCCCcchHHHhcCcccchhhhhhcCCC
Q 040843 263 VLITYLQHTHPALPHYNSSEWDWLRGALSTVDRDYGVLNKVFHNITDTHVAHHLFSTM 320 (379)
Q Consensus 263 ~~~~~~~H~~~~~p~~~~~~~~~~~~~l~T~~~~~~~l~~l~~~i~nyH~~HHlfP~i 320 (379)
.-..+++|.........+..|+-..+. .+.+.--|. ..-+++ .-|.+||..|.+
T Consensus 155 ~Qs~~l~Hd~gH~~i~~~~~wN~~~~~-fv~n~L~G~-sa~WW~--~~H~~HHa~pN~ 208 (430)
T KOG4232|consen 155 AQSGWLQHDYGHLSIFKNSKWNHLAQK-FVGNHLKGF-SAAWWK--SHHNQHHAAPNS 208 (430)
T ss_pred HHHHHHhcccccccccccccHHHHHHH-HHhhhcccc-cHHHHH--HHHhhhhccCcc
Confidence 344678887544433344556543322 121110011 011122 478899999987
No 36
>PLN02505 omega-6 fatty acid desaturase
Probab=23.61 E-value=2.9e+02 Score=27.12 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhHhhccccccCCCCchhhHHHHHHHH
Q 040843 83 PIYWIFQGCVLTGVWVIAHECGHHAFSDYQWVDDTVGLILH 123 (379)
Q Consensus 83 ~l~~v~~G~~~~~l~~l~Hda~H~~~~~~~~~N~~~G~l~~ 123 (379)
++-.++.+..+..+..++|---.-...+..-+|-.-|.+.+
T Consensus 256 ~vP~lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 256 GVPLLIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 33345566666667779998777777777888888776654
No 37
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.56 E-value=2.8e+02 Score=25.00 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=3.8
Q ss_pred hhhcCCC
Q 040843 69 YFHLLPS 75 (379)
Q Consensus 69 ~~~~~~~ 75 (379)
.+|++|.
T Consensus 127 lFPlWP~ 133 (224)
T PF03839_consen 127 LFPLWPR 133 (224)
T ss_pred hhhcChH
Confidence 4466654
No 38
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=22.52 E-value=5.3e+02 Score=22.89 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=10.8
Q ss_pred cchhhhhhcCCCC
Q 040843 309 DTHVAHHLFSTMP 321 (379)
Q Consensus 309 nyH~~HHlfP~iP 321 (379)
..|..||.+++.+
T Consensus 86 ~~H~~HH~~~~~~ 98 (222)
T cd03507 86 ISHNRHHAHTGNL 98 (222)
T ss_pred HHHHHHHhccCCC
Confidence 5899999998864
No 39
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=22.37 E-value=29 Score=31.15 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHhhccccc
Q 040843 89 QGCVLTGVWVIAHECGHH 106 (379)
Q Consensus 89 ~G~~~~~l~~l~Hda~H~ 106 (379)
-|-...+..+-+|||||-
T Consensus 83 ~~~SiaAvaVAAHEvGHA 100 (222)
T PF04298_consen 83 NGRSIAAVAVAAHEVGHA 100 (222)
T ss_pred CCCCHHHHHHHHHHHhHH
Confidence 455667778889999994
No 40
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=21.94 E-value=3.1e+02 Score=27.81 Aligned_cols=36 Identities=17% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCHHHHHHhcC
Q 040843 1 MGAGGPSLQREKKESLIQPAPHTKPPFTLSQIKKAIP 37 (379)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~lp 37 (379)
||-||+....++.|-..+. .-+.+.+|.+|+++.-.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ev~~h~~ 36 (485)
T PLN03199 1 MGKGGDAAAAKGRSAALKL-AEKPQKISWQEVKKHAS 36 (485)
T ss_pred CCCCCCCCCCCCCcccccc-CccCCccCHHHHHhhCC
Confidence 7777776654433333332 23345689999887543
Done!