Query 040843
Match_columns 379
No_of_seqs 196 out of 1715
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 20:08:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dae_A KIAA0733 protein; mitog 56.4 8 0.00027 26.8 2.7 34 309-342 10-58 (75)
2 2kpm_A Uncharacterized protein 48.9 27 0.00093 26.3 4.9 59 321-379 38-98 (105)
3 3bpy_A FORK head domain, forkh 27.0 1.2E+02 0.004 21.7 5.1 50 323-374 26-82 (85)
4 2c6y_A Forkhead box protein K2 25.8 1.4E+02 0.0047 22.6 5.5 50 324-374 38-90 (111)
5 1vtn_C HNF-3/FORK head DNA-rec 25.7 1.2E+02 0.0041 22.6 5.1 50 324-374 25-77 (102)
6 2hfh_A Genesis, HFH-2; HNF-3 h 23.0 67 0.0023 24.3 3.3 50 324-374 25-77 (109)
7 3l2c_A Forkhead box protein O4 19.5 1.8E+02 0.0063 21.8 5.1 50 323-374 45-101 (110)
8 2hdc_A Protein (transcription 19.2 1.6E+02 0.0054 21.7 4.6 50 324-374 24-76 (97)
9 3coa_C Forkhead box protein O1 15.2 2.3E+02 0.0079 21.6 4.8 50 323-374 32-88 (117)
10 2kzv_A Uncharacterized protein 14.9 1.9E+02 0.0066 20.9 4.1 55 322-378 26-81 (92)
No 1
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.38 E-value=8 Score=26.81 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=27.4
Q ss_pred cchhhhhh---cCCCC-----------ccCHHHHHHHHHhhhhhc-ccc
Q 040843 309 DTHVAHHL---FSTMP-----------HYHAMEATIAMKPILGEY-YQF 342 (379)
Q Consensus 309 nyH~~HHl---fP~iP-----------~y~Lp~~~~~l~~~~~~~-~~~ 342 (379)
++|+-|.| ||.|| .+|+.++-..|.++.++| |-+
T Consensus 10 d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kYLY~e 58 (75)
T 2dae_A 10 DFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGE 58 (75)
T ss_dssp CHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcccceecc
Confidence 68888887 89998 578888888888888887 444
No 2
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=48.89 E-value=27 Score=26.32 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=43.2
Q ss_pred CccCHHHHHHHHHhhhhhc-cccCCchHHHHHHHH-hhcCEeecCCCCCCCcceEEeecCC
Q 040843 321 PHYHAMEATIAMKPILGEY-YQFDGMPFYKAAWRE-AKECLYVEPDENSPTKGLFWYRNKL 379 (379)
Q Consensus 321 P~y~Lp~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
-|.+|-++-..|....|++ -+.+|.+=+..+.+. +....+-+.+.+...+.++|.|++|
T Consensus 38 GWa~Lg~vG~~L~k~~PdFDpRnYGy~kLs~Li~a~~~~FEi~~r~~~~~~~~~vyvr~~~ 98 (105)
T 2kpm_A 38 GWANLGNFGNYLNKLQPDFDSRLYGYKKLSDLVKARTDLFVTEERQVPGSTQKALYLRAKL 98 (105)
T ss_dssp SCEEHHHHHHHHHHHCTTCCGGGTTCSSHHHHHHHCTTTEEEEEEECTTCSSEEEEEEECC
T ss_pred CcEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhhCCcEEEEeecCCCCCceEEEEehhc
Confidence 3667777888888777777 455566656678887 6666666666666778899999886
No 3
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=27.03 E-value=1.2e+02 Score=21.74 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=29.2
Q ss_pred cCHHHHHHHHHhhhhhccccCC----chHHH-HHHHHh--hcCEeecCCCCCCCcceEE
Q 040843 323 YHAMEATIAMKPILGEYYQFDG----MPFYK-AAWREA--KECLYVEPDENSPTKGLFW 374 (379)
Q Consensus 323 y~Lp~~~~~l~~~~~~~~~~~~----~~~~~-~~~~~~--r~~~~~~~~~~~~~~~~~~ 374 (379)
--|.++++.+++.+| +|+..+ ..=|+ ++.-++ ..|-. +..+++++||-+|
T Consensus 26 ltL~eIY~~i~~~fp-yy~~~~~~~s~~gWqNSIRHNLSln~~F~-Kv~r~~~GKg~~W 82 (85)
T 3bpy_A 26 LTLAQIYEWMVRTVP-YFKDKGDSNSSAGWKNSIRHNLSLHSKFI-KVHNEATGKSSWW 82 (85)
T ss_dssp BCHHHHHHHHHHHCG-GGTTCTTCCTTSHHHHHHHHHHHHCTTEE-EECCCSTTCCCEE
T ss_pred ccHHHHHHHHHHhCc-chhcCccCccCCCcchhhhhhccHhhhhe-eCCCCCCCCCCce
Confidence 358899999998875 444432 12243 343333 34443 3334557899887
No 4
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=25.83 E-value=1.4e+02 Score=22.63 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHH--hhcCEe-ecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWRE--AKECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~r~~~~-~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.++ +++.....+-.++.-+ +..|-. +.++.++++||-+|
T Consensus 38 tL~eIY~~I~~~fP-yyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 38 TLNGIYTHITKNYP-YYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp EHHHHHHHHHHHCT-TSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred cHHHHHHHHHHcCC-ccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 58899999998875 5555433322233333 345544 33344557899877
No 5
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=25.67 E-value=1.2e+02 Score=22.57 Aligned_cols=50 Identities=18% Similarity=0.419 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHH--hhcCEe-ecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWRE--AKECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~r~~~~-~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.++ +++.....+-.++.-+ +..|-. ++.+.++++||-+|
T Consensus 25 tL~eIY~~I~~~fp-yyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W 77 (102)
T 1vtn_C 25 TLSEIYQWIMDLFP-YYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYW 77 (102)
T ss_dssp CHHHHHHHHHHHCG-GGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEE
T ss_pred cHHHHHHHHHHcCC-ccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceE
Confidence 48889999998875 5554333222233333 345544 33444567888877
No 6
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=23.05 E-value=67 Score=24.28 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=28.7
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHHh--hcCEe-ecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWREA--KECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--r~~~~-~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.++ +|+.....+-.++.-++ ..|-. ++++.++++||-+|
T Consensus 25 tL~eIY~~I~~~fP-yyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 77 (109)
T 2hfh_A 25 TLSGICEFISNRFP-YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYW 77 (109)
T ss_dssp CHHHHHHHHHTTCH-HHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCB
T ss_pred cHHHHHHHHHHhcc-hhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeE
Confidence 47788888887775 55554444333333333 34443 33444567788776
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=19.50 E-value=1.8e+02 Score=21.83 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHhhhhhccccCC----chHHH-HHHHHh--hcCEeecCCCCCCCcceEE
Q 040843 323 YHAMEATIAMKPILGEYYQFDG----MPFYK-AAWREA--KECLYVEPDENSPTKGLFW 374 (379)
Q Consensus 323 y~Lp~~~~~l~~~~~~~~~~~~----~~~~~-~~~~~~--r~~~~~~~~~~~~~~~~~~ 374 (379)
--|.++++.|++.++ ||+... ..=|+ ++.-++ ..| +++..++.++||-+|
T Consensus 45 LtL~eIY~~I~~~fP-yyr~~~~~~s~~gWqNSIRHNLSln~~-F~Kv~r~~~GKG~~W 101 (110)
T 3l2c_A 45 LTLAQIYEWMVRTVP-YFKDKGDSNSSAGWKNSIRHNLSLHSK-FIKVHNEATGKSSWW 101 (110)
T ss_dssp BCHHHHHHHHHHHCG-GGTTCTTCCTTSHHHHHHHHHHHHCTT-EEEECCCSTTCCCEE
T ss_pred cCHHHHHHHHHHhCc-hhhcCccccCCCCcccchhhhccHhhh-heeCCCCCCCCCceE
Confidence 469999999998886 555432 12244 344333 455 344344557899887
No 8
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=19.20 E-value=1.6e+02 Score=21.65 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=28.5
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHH--hhcCEe-ecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWRE--AKECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~r~~~~-~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.++ +++.....+-.++.-+ +..|-. ++.+.++++||-+|
T Consensus 24 tL~eIY~~i~~~fp-yyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W 76 (97)
T 2hdc_A 24 TLSGICEFISNRFP-YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYW 76 (97)
T ss_dssp CHHHHHHHHHHHCH-HHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEE
T ss_pred CHHHHHHHHHHhch-hhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceE
Confidence 47888888887775 4444443322233322 234433 34455667899887
No 9
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=15.25 E-value=2.3e+02 Score=21.56 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHhhhhhccccCCc----hHHHH-HHHH--hhcCEeecCCCCCCCcceEE
Q 040843 323 YHAMEATIAMKPILGEYYQFDGM----PFYKA-AWRE--AKECLYVEPDENSPTKGLFW 374 (379)
Q Consensus 323 y~Lp~~~~~l~~~~~~~~~~~~~----~~~~~-~~~~--~r~~~~~~~~~~~~~~~~~~ 374 (379)
--|.++++.|++.+| ||+..+. .=|+. +.-+ +..|-.=.+ ++.++||-+|
T Consensus 32 LTL~eIY~~I~~~fP-yyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~-~~~~GKg~~W 88 (117)
T 3coa_C 32 LTLSQIYEWMVKSVP-YFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQ-NEGTGKSSWW 88 (117)
T ss_dssp BCHHHHHHHHHHHCG-GGTTCCSHHHHHHHHHHHHHHHHHCTTEEEEC-CSSTTCCCEE
T ss_pred ccHHHHHHHHHHhCc-ccccCCCCcccccchhccchheecchhhcccc-cCCCCCcceE
Confidence 358899999998885 6665431 22332 3222 345544333 3457788877
No 10
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=14.87 E-value=1.9e+02 Score=20.92 Aligned_cols=55 Identities=9% Similarity=-0.177 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHhhhhhc-cccCCchHHHHHHHHhhcCEeecCCCCCCCcceEEeecC
Q 040843 322 HYHAMEATIAMKPILGEY-YQFDGMPFYKAAWREAKECLYVEPDENSPTKGLFWYRNK 378 (379)
Q Consensus 322 ~y~Lp~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 378 (379)
|.+|-++-..|....|++ -+.+|.+=+..+.+......+-+.+.+. +-++|+|++
T Consensus 26 Wa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~~~~~fe~~~~~~~~--~~~i~vR~~ 81 (92)
T 2kzv_A 26 WAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVKKLDFLTVQESRNGS--KLHSEIRLR 81 (92)
T ss_dssp SCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHHTCTTEEEEEEEETT--EEEEEEEEC
T ss_pred cEeHHHHHHHHHHhCcCCCccccCcccHHHHHHhcCcEEEEEcCCCC--ceEEEEEeC
Confidence 667777778888777777 4556766566777775555544433222 567888864
Done!