Query 040843
Match_columns 379
No_of_seqs 196 out of 1715
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 20:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040843.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040843hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 35.5 28 0.002 22.8 4.6 50 324-374 18-71 (75)
2 d2c6ya1 a.4.5.14 (A:1-98) Inte 32.6 43 0.0032 23.0 5.5 50 324-374 25-77 (98)
3 d1d5va_ a.4.5.14 (A:) Adipocyt 32.4 26 0.0019 24.0 4.2 51 323-374 25-78 (94)
4 d2hdca_ a.4.5.14 (A:) Genesis 24.8 36 0.0027 23.4 3.9 50 324-374 24-76 (97)
5 d3bpya1 a.4.5.14 (A:93-177) Af 16.6 1.2E+02 0.0087 20.0 5.0 50 323-374 26-82 (85)
6 d2heka1 a.211.1.1 (A:1-369) Hy 11.3 44 0.0032 28.3 1.8 16 95-110 78-93 (369)
7 d2o6ia1 a.211.1.1 (A:1-453) Hy 8.9 52 0.0038 29.2 1.4 15 96-110 105-119 (453)
8 d1kcfa1 a.140.2.1 (A:3-38) Mit 7.9 1.1E+02 0.0083 15.8 1.9 30 97-126 5-34 (36)
9 d2a07f1 a.4.5.14 (F:503-584) F 7.1 1.4E+02 0.01 19.4 2.7 47 324-374 24-71 (82)
10 d2e9xb1 a.278.1.2 (B:62-173) D 5.1 1.9E+02 0.014 19.9 2.5 30 312-341 18-47 (112)
No 1
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.52 E-value=28 Score=22.75 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHHh--hcCEe-ecCCCCCC-CcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWREA--KECLY-VEPDENSP-TKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--r~~~~-~~~~~~~~-~~~~~~ 374 (379)
-|.++++.+++.+| ++++....+-.++.-++ ..|-. ++++.+++ +||-+|
T Consensus 18 tL~eIy~~i~~~fp-y~r~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~~gKg~~W 71 (75)
T d1kq8a_ 18 TLAEINEYLMGKFP-FFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYW 71 (75)
T ss_dssp CHHHHHHHHHHHCT-TGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCE
T ss_pred cHHHHHHHHHHhCc-ccccCCccchhHhhecccccceeEecCCCCCCCCCCccEE
Confidence 47888999988875 55555444333444433 23322 22343333 688776
No 2
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.55 E-value=43 Score=22.98 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHHh--hcCEe-ecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWREA--KECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--r~~~~-~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.+| +++.....+-.++.-++ ..|-. +..+.++++||-+|
T Consensus 25 tL~eIy~~i~~~fp-yfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W 77 (98)
T d2c6ya1 25 TLNGIYTHITKNYP-YYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 77 (98)
T ss_dssp EHHHHHHHHHHHCT-TSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred cHHHHHHHHHHhCc-ccccCCCCcchhhchhcccccceEeccCCCCCCCCCceE
Confidence 47888999987775 55655443323344333 45543 33444556788876
No 3
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.38 E-value=26 Score=24.00 Aligned_cols=51 Identities=18% Similarity=0.378 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHhhhhhccccCCchHHHHHHHHh--hcCEe-ecCCCCCCCcceEE
Q 040843 323 YHAMEATIAMKPILGEYYQFDGMPFYKAAWREA--KECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 323 y~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--r~~~~-~~~~~~~~~~~~~~ 374 (379)
--|.++++.+++.+| +++.....+-.++.-++ +.|-. +..+.++++||-+|
T Consensus 25 ltL~eIY~~i~~~fp-yfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W 78 (94)
T d1d5va_ 25 ITLNGIYQFIMDRFP-FYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYW 78 (94)
T ss_dssp BCHHHHHHHHHHHCT-HHHHCCTTHHHHHHHHHHHCSSEEECCCCTTSCSCCCCE
T ss_pred ccHHHHHHHHHHHCC-ccCccccchHHHHHHHccccceEEEcCcCCCCCCCCceE
Confidence 358899999998874 55555544333444444 44444 33445556788765
No 4
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.77 E-value=36 Score=23.35 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHHh--hcCEe-ecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWREA--KECLY-VEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--r~~~~-~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.+| +++.....+-.++.-++ ..|-. +..+.++++||-+|
T Consensus 24 tL~eIY~~i~~~fp-yfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gKg~~W 76 (97)
T d2hdca_ 24 TLSGICEFISNRFP-YYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYW 76 (97)
T ss_dssp CHHHHHHHHHHHCH-HHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEE
T ss_pred cHHHHHHHHHHhCc-cccCCCCCchhhhhhhcchhhhhcccCCCCCCCCCCcEE
Confidence 47888888887775 55544444333444443 33332 44555667889776
No 5
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.64 E-value=1.2e+02 Score=19.98 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=28.8
Q ss_pred cCHHHHHHHHHhhhhhccccCC----chHHHH-HHHH--hhcCEeecCCCCCCCcceEE
Q 040843 323 YHAMEATIAMKPILGEYYQFDG----MPFYKA-AWRE--AKECLYVEPDENSPTKGLFW 374 (379)
Q Consensus 323 y~Lp~~~~~l~~~~~~~~~~~~----~~~~~~-~~~~--~r~~~~~~~~~~~~~~~~~~ 374 (379)
--|.++++.+++.+| +|++.+ ..=++. +.-+ ++.| ++.-+++.++||-+|
T Consensus 26 ltL~eIY~~i~~~fP-yyr~~~~~~~~~gWkNSIRHnLSl~~~-F~kv~r~~~gKg~~W 82 (85)
T d3bpya1 26 LTLAQIYEWMVRTVP-YFKDKGDSNSSAGWKNSIRHNLSLHSK-FIKVHNEATGKSSWW 82 (85)
T ss_dssp BCHHHHHHHHHHHCG-GGTTCTTCCTTSHHHHHHHHHHHHCTT-EEEECCCSTTCCCEE
T ss_pred ccHHHHHHHHHHhCh-hhhccCcccccccchhhHHHHhhHhhh-eeeCCCCCCCCCcee
Confidence 358999999998885 555432 122443 3333 3455 343334456788776
No 6
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]}
Probab=11.27 E-value=44 Score=28.29 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.1
Q ss_pred HHHhHhhccccccCCC
Q 040843 95 GVWVIAHECGHHAFSD 110 (379)
Q Consensus 95 ~l~~l~Hda~H~~~~~ 110 (379)
.+..++||.||+.|+.
T Consensus 78 ~~A~LlHDiGh~PFsH 93 (369)
T d2heka1 78 KLAGLLHDLGHPPFSH 93 (369)
T ss_dssp HHHHHTTTTTCCSSSS
T ss_pred HHHHHHhhcccchhhh
Confidence 4556899999999975
No 7
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]}
Probab=8.90 E-value=52 Score=29.23 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=11.9
Q ss_pred HHhHhhccccccCCC
Q 040843 96 VWVIAHECGHHAFSD 110 (379)
Q Consensus 96 l~~l~Hda~H~~~~~ 110 (379)
+..+.||-|||.|+.
T Consensus 105 ~AaLlHDiGHgPfSH 119 (453)
T d2o6ia1 105 CAALLHDVGHGPYSH 119 (453)
T ss_dssp HHHHHTTTTCCTTHH
T ss_pred HHHHHhccCcccccc
Confidence 444889999999864
No 8
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=7.90 E-value=1.1e+02 Score=15.83 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=23.7
Q ss_pred HhHhhccccccCCCCchhhHHHHHHHHhhc
Q 040843 97 WVIAHECGHHAFSDYQWVDDTVGLILHSAL 126 (379)
Q Consensus 97 ~~l~Hda~H~~~~~~~~~N~~~G~l~~~~~ 126 (379)
.+++|-|--..++++.+-++++-.+...|+
T Consensus 5 sflqhickltglsrsgrkdellrrivdspi 34 (36)
T d1kcfa1 5 SFLQHICKLTGLSRSGRKDELLRRIVDSPI 34 (36)
T ss_dssp HHHHHHHHHTTCCCCSCTTHHHHHHHHCCC
T ss_pred HHHHHHHHhhcccccccHHHHHHHHhcCCC
Confidence 457788887888888888888888887764
No 9
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.13 E-value=1.4e+02 Score=19.38 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhhhhhccccCCchHHHHHHHHhhcC-EeecCCCCCCCcceEE
Q 040843 324 HAMEATIAMKPILGEYYQFDGMPFYKAAWREAKEC-LYVEPDENSPTKGLFW 374 (379)
Q Consensus 324 ~Lp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~ 374 (379)
-|.++++.+++.+| +++..+...-.++.-+++.. .++..+ +++|-+|
T Consensus 24 tL~eIy~~i~~~fp-yyr~~~~gWkNSIRHnLS~n~~F~kv~---~~kG~~W 71 (82)
T d2a07f1 24 TLNEIYSWFTRTFA-YFRRNAATWKNAVRHNLSLHKCFVRVE---NVKGAVW 71 (82)
T ss_dssp CHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCTTBCCEE---CSSSEEC
T ss_pred cHHHHHHHHHHhCc-ccccCCcccchhHhHhcccccceEeCC---CCCCCEE
Confidence 58899999998886 55654433223344344322 233333 4578655
No 10
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.08 E-value=1.9e+02 Score=19.88 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=21.1
Q ss_pred hhhhhcCCCCccCHHHHHHHHHhhhhhccc
Q 040843 312 VAHHLFSTMPHYHAMEATIAMKPILGEYYQ 341 (379)
Q Consensus 312 ~~HHlfP~iP~y~Lp~~~~~l~~~~~~~~~ 341 (379)
.++.-|-.+|++++-++...+-+.+.+...
T Consensus 18 ~~~~~f~~lP~~~~~Eia~~ll~~a~ddi~ 47 (112)
T d2e9xb1 18 RKEETFTPMPSPYYMELTKLLLNHASDNIP 47 (112)
T ss_dssp HHCSSCCCCSSTTHHHHHHHHHHHHGGGST
T ss_pred hcccccccCCcHHHHHHHHHHHHhcccCCC
Confidence 356678889988777777777766655543
Done!