Query 040845
Match_columns 824
No_of_seqs 757 out of 5489
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 20:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.4E-57 4.8E-62 544.1 31.9 453 2-462 205-751 (768)
2 4asz_A BDNF/NT-3 growth factor 100.0 3.4E-54 1.2E-58 449.5 15.9 261 527-810 13-292 (299)
3 4aoj_A High affinity nerve gro 100.0 9.8E-54 3.3E-58 452.5 18.7 260 527-809 41-321 (329)
4 3omv_A RAF proto-oncogene seri 100.0 3.6E-53 1.2E-57 441.4 21.5 264 526-810 35-303 (307)
5 3rgz_A Protein brassinosteroid 100.0 4.7E-52 1.6E-56 496.4 32.8 435 2-447 183-716 (768)
6 4gt4_A Tyrosine-protein kinase 100.0 2E-53 6.7E-58 445.8 15.4 256 527-805 26-304 (308)
7 3t6q_A CD180 antigen; protein- 100.0 1.8E-51 6.3E-56 480.4 31.4 446 2-452 38-564 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 2E-51 7E-56 495.9 30.5 443 2-453 29-565 (844)
9 4fih_A Serine/threonine-protei 100.0 1.3E-51 4.4E-56 434.8 18.8 250 527-801 74-324 (346)
10 4g3f_A NF-kappa-beta-inducing 100.0 4.3E-51 1.5E-55 429.6 20.9 257 526-809 57-318 (336)
11 3hmm_A TGF-beta receptor type- 100.0 4.5E-51 1.5E-55 429.5 20.1 278 527-808 3-298 (303)
12 4aw0_A HPDK1, 3-phosphoinositi 100.0 9.2E-52 3.1E-56 429.2 14.5 251 526-801 31-285 (311)
13 3t6q_A CD180 antigen; protein- 100.0 1.6E-49 5.3E-54 464.1 34.7 419 2-430 62-565 (606)
14 3vq2_A TLR4, TOLL-like recepto 100.0 4.9E-50 1.7E-54 468.4 30.5 440 2-452 37-562 (606)
15 4ase_A Vascular endothelial gr 100.0 2E-51 6.8E-56 438.2 16.4 269 520-810 57-350 (353)
16 4b9d_A Serine/threonine-protei 100.0 3.3E-51 1.1E-55 432.4 16.7 251 526-801 23-277 (350)
17 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-49 6.1E-54 470.0 33.5 445 3-453 55-627 (680)
18 3fpq_A Serine/threonine-protei 100.0 3.4E-50 1.2E-54 415.9 20.6 245 530-801 29-283 (290)
19 4fie_A Serine/threonine-protei 100.0 2.2E-50 7.5E-55 435.9 19.2 250 527-801 151-401 (423)
20 3hyh_A Carbon catabolite-derep 100.0 4E-50 1.4E-54 411.5 16.9 247 526-801 12-263 (275)
21 3ubd_A Ribosomal protein S6 ki 100.0 2E-50 6.7E-55 419.6 11.1 248 527-801 24-282 (304)
22 2z63_A TOLL-like receptor 4, v 100.0 3.9E-48 1.3E-52 449.2 29.2 435 2-452 33-535 (570)
23 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-47 1.4E-51 443.7 33.5 413 2-430 61-563 (606)
24 4eco_A Uncharacterized protein 100.0 4.3E-48 1.5E-52 451.4 23.1 385 54-453 192-631 (636)
25 1ziw_A TOLL-like receptor 3; i 100.0 9.9E-47 3.4E-51 446.5 34.6 442 2-446 30-515 (680)
26 4g31_A Eukaryotic translation 100.0 5.1E-48 1.7E-52 403.8 19.3 250 527-801 5-280 (299)
27 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-47 9.4E-52 439.7 22.4 435 2-452 31-514 (549)
28 4ecn_A Leucine-rich repeat pro 100.0 3.5E-47 1.2E-51 450.0 21.5 437 2-454 328-872 (876)
29 3j0a_A TOLL-like receptor 5; m 100.0 7.2E-46 2.5E-50 447.5 31.1 421 2-430 53-565 (844)
30 2z63_A TOLL-like receptor 4, v 100.0 2.2E-46 7.5E-51 434.5 25.5 437 2-452 57-560 (570)
31 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-46 1.4E-50 426.7 22.4 431 2-452 5-485 (520)
32 4eco_A Uncharacterized protein 100.0 3.4E-46 1.2E-50 435.5 20.1 383 2-401 86-600 (636)
33 4f9c_A Cell division cycle 7-r 100.0 8.9E-46 3.1E-50 397.7 19.9 269 524-801 18-353 (361)
34 4b99_A Mitogen-activated prote 100.0 6.9E-46 2.3E-50 402.6 19.1 270 526-801 53-345 (398)
35 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-45 1.2E-49 422.1 20.7 416 2-430 55-515 (549)
36 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-45 8.5E-50 420.2 16.2 413 2-430 26-486 (520)
37 4ecn_A Leucine-rich repeat pro 100.0 4.5E-44 1.5E-48 423.5 26.3 417 21-449 323-841 (876)
38 3uto_A Twitchin; kinase, muscl 100.0 1.2E-44 4.3E-49 412.7 19.9 253 526-801 156-411 (573)
39 3v5w_A G-protein coupled recep 100.0 1.3E-44 4.4E-49 407.8 19.1 250 526-801 188-450 (689)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-43 2.3E-47 403.4 29.3 411 2-429 36-514 (562)
41 4g8a_A TOLL-like receptor 4; l 100.0 8.7E-43 3E-47 409.8 30.6 434 2-452 57-584 (635)
42 2qkw_B Protein kinase; three-h 100.0 1.3E-43 4.5E-48 379.2 20.1 281 518-807 30-315 (321)
43 3soc_A Activin receptor type-2 100.0 4.5E-43 1.5E-47 374.9 21.2 276 526-808 23-319 (322)
44 3s95_A LIMK-1, LIM domain kina 100.0 6.2E-43 2.1E-47 372.1 21.6 265 526-811 9-286 (310)
45 3uim_A Brassinosteroid insensi 100.0 1.1E-42 3.7E-47 373.1 21.1 282 513-804 16-308 (326)
46 3v47_A TOLL-like receptor 5B a 100.0 3.7E-42 1.3E-46 387.1 26.2 371 45-433 30-416 (455)
47 2psq_A Fibroblast growth facto 100.0 1.3E-42 4.5E-47 377.9 20.3 261 526-809 80-366 (370)
48 3fxz_A Serine/threonine-protei 100.0 1.7E-42 5.9E-47 365.7 20.3 251 526-801 19-270 (297)
49 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-42 2.1E-46 395.3 24.2 412 19-452 29-514 (562)
50 3p86_A Serine/threonine-protei 100.0 1.4E-42 4.7E-47 368.3 17.2 262 525-811 35-302 (309)
51 3cbl_A C-FES, proto-oncogene t 100.0 4.1E-43 1.4E-47 383.4 13.4 260 526-808 113-375 (377)
52 3kul_A Ephrin type-A receptor 100.0 2.2E-42 7.5E-47 369.7 18.0 263 526-811 48-317 (325)
53 2nru_A Interleukin-1 receptor- 100.0 4.7E-41 1.6E-45 357.2 27.8 281 514-807 12-306 (307)
54 4hcu_A Tyrosine-protein kinase 100.0 2.8E-42 9.6E-47 359.1 17.3 258 526-808 9-267 (269)
55 3ugc_A Tyrosine-protein kinase 100.0 1.6E-42 5.3E-47 366.3 15.4 275 526-809 9-293 (295)
56 2c30_A Serine/threonine-protei 100.0 1.2E-41 4.1E-46 363.3 21.8 261 516-801 24-295 (321)
57 3fe3_A MAP/microtubule affinit 100.0 3E-42 1E-46 368.0 16.8 248 526-801 14-265 (328)
58 3sxs_A Cytoplasmic tyrosine-pr 100.0 3.5E-42 1.2E-46 358.2 16.3 257 526-807 7-264 (268)
59 3zgw_A Maternal embryonic leuc 100.0 4.2E-42 1.4E-46 368.9 16.4 252 525-802 8-262 (347)
60 3lb7_A RAF proto-oncogene seri 100.0 1.6E-41 5.3E-46 360.0 20.5 264 526-810 35-303 (307)
61 3vhe_A Vascular endothelial gr 100.0 4.3E-42 1.5E-46 373.8 16.0 271 517-809 12-357 (359)
62 2qol_A Ephrin receptor; recept 100.0 6.3E-42 2.2E-46 372.7 16.5 260 526-808 44-310 (373)
63 2yab_A Death-associated protei 100.0 3.7E-41 1.3E-45 363.9 22.4 252 526-801 11-273 (361)
64 1tki_A Titin; serine kinase, m 100.0 1.8E-41 6.2E-46 361.6 19.4 253 526-802 4-259 (321)
65 3niz_A Rhodanese family protei 100.0 4.3E-41 1.5E-45 357.5 22.1 270 525-801 19-301 (311)
66 1o6l_A RAC-beta serine/threoni 100.0 2.2E-41 7.4E-46 362.4 19.8 249 526-801 4-261 (337)
67 3tki_A Serine/threonine-protei 100.0 1.4E-41 4.7E-46 363.0 18.1 254 526-801 6-262 (323)
68 3gen_A Tyrosine-protein kinase 100.0 1.3E-41 4.4E-46 357.0 16.8 258 526-808 23-281 (283)
69 3v47_A TOLL-like receptor 5B a 100.0 6.1E-41 2.1E-45 377.2 23.5 378 4-405 17-412 (455)
70 3tt0_A Basic fibroblast growth 100.0 2.3E-41 7.9E-46 370.4 18.5 264 526-812 68-357 (382)
71 1luf_A Muscle-specific tyrosin 100.0 1E-41 3.4E-46 368.5 14.9 267 523-812 43-340 (343)
72 3poz_A Epidermal growth factor 100.0 1.8E-41 6.1E-46 363.3 16.5 259 526-808 14-279 (327)
73 4eqm_A Protein kinase; transfe 100.0 4.3E-41 1.5E-45 354.6 19.1 261 526-807 10-275 (294)
74 3q4u_A Activin receptor type-1 100.0 1.2E-40 4.2E-45 352.9 22.7 265 526-805 7-300 (301)
75 3mdy_A Bone morphogenetic prot 100.0 2.2E-40 7.4E-45 357.1 25.0 269 523-809 33-333 (337)
76 1t46_A HOMO sapiens V-KIT hard 100.0 3.5E-41 1.2E-45 359.3 18.4 264 526-811 22-311 (313)
77 1rjb_A FL cytokine receptor; k 100.0 2.6E-41 8.8E-46 365.3 17.6 266 525-812 43-339 (344)
78 4aw2_A Serine/threonine-protei 100.0 5.8E-42 2E-46 378.3 12.7 262 520-801 67-339 (437)
79 1k9a_A Carboxyl-terminal SRC k 100.0 5.7E-41 1.9E-45 374.8 20.8 252 526-808 192-446 (450)
80 3h4j_B AMPK kdaid, SNF1-like p 100.0 3.5E-41 1.2E-45 360.3 18.1 248 526-802 8-260 (336)
81 1jl5_A Outer protein YOPM; leu 100.0 1.9E-40 6.3E-45 370.0 24.5 384 2-449 16-430 (454)
82 4g8a_A TOLL-like receptor 4; l 100.0 5.6E-40 1.9E-44 385.9 29.9 419 2-429 81-584 (635)
83 3l9p_A Anaplastic lymphoma kin 100.0 6.7E-42 2.3E-46 372.1 12.4 260 526-808 70-346 (367)
84 2y0a_A Death-associated protei 100.0 1.2E-40 4E-45 356.5 21.4 252 526-801 10-272 (326)
85 3o0g_A Cell division protein k 100.0 1.4E-40 4.9E-45 350.6 21.2 269 527-801 2-283 (292)
86 2ivs_A Proto-oncogene tyrosine 100.0 5E-41 1.7E-45 358.2 17.9 260 526-808 22-312 (314)
87 1ob3_A PFPK5, cell division co 100.0 9.5E-41 3.3E-45 351.1 19.3 268 527-801 2-281 (288)
88 1csn_A Casein kinase-1; phosph 100.0 3.3E-40 1.1E-44 349.1 23.4 266 526-812 9-288 (298)
89 3soa_A Calcium/calmodulin-depe 100.0 1E-40 3.4E-45 370.0 20.3 254 525-801 9-268 (444)
90 3c0i_A Peripheral plasma membr 100.0 7.8E-41 2.7E-45 361.6 18.9 253 526-801 23-287 (351)
91 1mp8_A Focal adhesion kinase 1 100.0 4.5E-41 1.5E-45 352.3 16.5 259 526-809 14-278 (281)
92 4euu_A Serine/threonine-protei 100.0 2.4E-40 8.1E-45 353.6 22.3 273 526-804 8-306 (319)
93 3t9t_A Tyrosine-protein kinase 100.0 5.5E-41 1.9E-45 349.0 16.8 258 526-808 7-265 (267)
94 1qcf_A Haematopoetic cell kina 100.0 1.7E-41 5.7E-46 379.9 13.8 258 526-809 187-446 (454)
95 1kob_A Twitchin; kinase, intra 100.0 9.1E-41 3.1E-45 364.1 19.2 253 526-801 50-305 (387)
96 3qup_A Tyrosine-protein kinase 100.0 5.3E-41 1.8E-45 359.5 16.9 260 526-808 22-299 (323)
97 4dc2_A Protein kinase C IOTA t 100.0 6.4E-41 2.2E-45 365.0 17.6 255 526-801 51-319 (396)
98 3txo_A PKC-L, NPKC-ETA, protei 100.0 2.2E-41 7.4E-46 364.8 13.7 249 526-801 22-281 (353)
99 2bdw_A Hypothetical protein K1 100.0 1.3E-40 4.6E-45 360.7 19.7 253 525-801 27-285 (362)
100 3kex_A Receptor tyrosine-prote 100.0 2.1E-41 7.1E-46 362.6 13.1 259 527-809 13-278 (325)
101 4e5w_A Tyrosine-protein kinase 100.0 5.8E-41 2E-45 355.6 16.3 269 527-806 21-301 (302)
102 3og7_A AKAP9-BRAF fusion prote 100.0 1E-40 3.6E-45 351.0 18.2 259 526-806 23-287 (289)
103 1fot_A TPK1 delta, CAMP-depend 100.0 1.2E-40 4.2E-45 354.0 18.7 246 526-801 5-259 (318)
104 4f0f_A Serine/threonine-protei 100.0 1.9E-40 6.3E-45 348.9 19.8 253 526-805 18-287 (287)
105 3g2f_A Bone morphogenetic prot 100.0 1.2E-40 4.2E-45 358.8 18.7 281 526-815 12-326 (336)
106 3op5_A Serine/threonine-protei 100.0 1E-40 3.5E-45 363.1 18.1 272 526-811 34-333 (364)
107 2izr_A Casein kinase I isoform 100.0 2.9E-40 9.9E-45 354.6 21.4 264 526-809 8-283 (330)
108 3v8s_A RHO-associated protein 100.0 5.8E-41 2E-45 367.5 15.0 258 521-801 63-330 (410)
109 3dtc_A Mitogen-activated prote 100.0 7.2E-41 2.5E-45 348.9 14.8 251 526-805 6-271 (271)
110 2pvf_A Fibroblast growth facto 100.0 1.1E-40 3.9E-45 358.4 16.8 262 526-810 34-321 (334)
111 1o6v_A Internalin A; bacterial 100.0 2.2E-39 7.4E-44 364.9 27.7 349 18-428 43-391 (466)
112 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 5.4E-41 1.9E-45 375.2 14.5 262 526-813 183-446 (452)
113 2xir_A Vascular endothelial gr 100.0 1.2E-40 4E-45 355.7 16.4 271 518-810 18-313 (316)
114 3lzb_A Epidermal growth factor 100.0 1.3E-40 4.3E-45 356.4 16.7 260 526-809 14-280 (327)
115 1xjd_A Protein kinase C, theta 100.0 5.1E-41 1.7E-45 360.4 13.6 250 524-800 14-269 (345)
116 3lxl_A Tyrosine-protein kinase 100.0 6.3E-41 2.2E-45 359.4 14.2 277 526-810 22-306 (327)
117 3c1x_A Hepatocyte growth facto 100.0 8.2E-41 2.8E-45 363.5 15.3 263 527-812 89-360 (373)
118 3gni_B Strad alpha; kinase fol 100.0 4E-40 1.4E-44 362.0 20.9 272 526-801 24-334 (389)
119 4fr4_A YANK1, serine/threonine 100.0 2.9E-40 1E-44 358.6 19.6 250 526-800 14-271 (384)
120 2eva_A TAK1 kinase - TAB1 chim 100.0 4.3E-40 1.5E-44 349.2 20.3 257 526-810 7-266 (307)
121 3lxp_A Non-receptor tyrosine-p 100.0 2.4E-40 8.4E-45 353.1 18.4 272 529-811 33-314 (318)
122 1rdq_E PKA C-alpha, CAMP-depen 100.0 1.8E-40 6.3E-45 357.4 17.4 246 526-801 40-294 (350)
123 1u59_A Tyrosine-protein kinase 100.0 2.8E-40 9.6E-45 347.4 18.1 265 526-814 8-279 (287)
124 3a8x_A Protein kinase C IOTA t 100.0 2.2E-40 7.6E-45 356.3 17.6 255 526-801 8-276 (345)
125 2x4f_A Myosin light chain kina 100.0 2E-40 6.7E-45 360.7 17.3 248 531-801 93-343 (373)
126 3kmu_A ILK, integrin-linked ki 100.0 3.3E-40 1.1E-44 343.9 18.3 252 526-807 9-270 (271)
127 3qd2_B Eukaryotic translation 100.0 3.3E-40 1.1E-44 354.9 18.6 251 526-801 5-326 (332)
128 2vd5_A DMPK protein; serine/th 100.0 1.3E-40 4.3E-45 365.1 15.5 261 520-801 54-328 (412)
129 1opk_A P150, C-ABL, proto-onco 100.0 8E-41 2.7E-45 377.8 14.3 256 526-806 219-477 (495)
130 3f66_A Hepatocyte growth facto 100.0 6.3E-40 2.1E-44 346.9 20.2 263 526-811 24-295 (298)
131 2pmi_A Negative RE, cyclin-dep 100.0 5E-40 1.7E-44 350.4 19.6 269 526-801 4-294 (317)
132 3cok_A Serine/threonine-protei 100.0 3.7E-40 1.3E-44 344.9 18.2 250 526-801 10-263 (278)
133 2zv2_A Calcium/calmodulin-depe 100.0 1.7E-40 5.7E-45 351.2 15.7 250 526-801 12-293 (298)
134 2i0e_A Protein kinase C-beta I 100.0 2.2E-40 7.4E-45 356.7 16.8 249 526-801 19-277 (353)
135 4fvq_A Tyrosine-protein kinase 100.0 1.5E-40 5.1E-45 350.0 15.3 253 526-808 7-276 (289)
136 3dbq_A Dual specificity protei 100.0 3.3E-40 1.1E-44 355.9 18.2 253 526-802 8-275 (343)
137 3a62_A Ribosomal protein S6 ki 100.0 2.3E-40 8E-45 354.3 16.8 249 526-801 16-277 (327)
138 2w4o_A Calcium/calmodulin-depe 100.0 3.9E-40 1.3E-44 355.6 18.5 252 525-801 51-306 (349)
139 3brb_A Proto-oncogene tyrosine 100.0 3.6E-40 1.2E-44 351.3 18.0 263 525-810 32-311 (313)
140 3kn6_A Ribosomal protein S6 ki 100.0 3.1E-40 1.1E-44 352.8 17.5 249 532-801 16-271 (325)
141 3f3z_A Calcium/calmodulin-depe 100.0 9.7E-40 3.3E-44 341.5 20.8 251 526-801 8-262 (277)
142 2w1i_A JAK2; chromosomal rearr 100.0 2.3E-40 8E-45 354.7 16.5 272 526-809 40-324 (326)
143 3uc3_A Serine/threonine-protei 100.0 2.6E-40 8.8E-45 358.6 16.7 253 526-801 19-275 (361)
144 3fdn_A Serine/threonine-protei 100.0 3.8E-40 1.3E-44 345.0 17.3 248 526-802 8-259 (279)
145 2i1m_A Macrophage colony-stimu 100.0 1.3E-40 4.6E-45 358.0 14.3 265 525-811 44-330 (333)
146 3cc6_A Protein tyrosine kinase 100.0 3.7E-40 1.3E-44 345.4 17.1 258 526-808 11-274 (281)
147 2yex_A Serine/threonine-protei 100.0 1E-39 3.4E-44 341.2 20.2 255 525-801 5-262 (276)
148 1p4o_A Insulin-like growth fac 100.0 4.5E-41 1.5E-45 359.9 10.1 266 521-809 19-301 (322)
149 1b6c_B TGF-B superfamily recep 100.0 4.5E-39 1.5E-43 347.6 25.7 277 518-809 33-338 (342)
150 2id5_A Lingo-1, leucine rich r 100.0 2.9E-39 1E-43 365.5 25.3 347 72-452 14-360 (477)
151 3pls_A Macrophage-stimulating 100.0 6.8E-40 2.3E-44 346.7 18.9 262 528-811 22-291 (298)
152 1qpc_A LCK kinase; alpha beta 100.0 4E-40 1.4E-44 344.8 16.9 260 526-811 12-273 (279)
153 3p1a_A MYT1 kinase, membrane-a 100.0 6.7E-40 2.3E-44 348.4 18.8 245 527-801 57-305 (311)
154 3ork_A Serine/threonine protei 100.0 1.2E-40 4.1E-45 354.5 13.0 260 526-806 11-280 (311)
155 2a2a_A Death-associated protei 100.0 1.5E-39 5.1E-44 347.6 21.5 252 526-801 11-273 (321)
156 1mqb_A Ephrin type-A receptor 100.0 5.9E-40 2E-44 352.3 18.2 260 527-809 44-311 (333)
157 2h34_A Serine/threonine-protei 100.0 6.5E-40 2.2E-44 348.3 18.2 263 526-811 33-300 (309)
158 3mtl_A Cell division protein k 100.0 3.6E-40 1.2E-44 352.7 16.3 268 527-801 2-282 (324)
159 2wqm_A Serine/threonine-protei 100.0 8.7E-40 3E-44 347.8 19.0 265 526-812 31-302 (310)
160 3e7e_A HBUB1, BUB1A, mitotic c 100.0 2.1E-39 7.3E-44 353.0 22.4 253 526-809 64-341 (365)
161 2buj_A Serine/threonine-protei 100.0 5.7E-40 1.9E-44 350.5 17.5 261 526-807 28-306 (317)
162 3kfa_A Tyrosine-protein kinase 100.0 4.3E-40 1.5E-44 346.4 16.2 258 525-807 11-271 (288)
163 3hko_A Calcium/calmodulin-depe 100.0 8.3E-40 2.8E-44 353.7 18.7 260 522-801 21-331 (345)
164 2y94_A 5'-AMP-activated protei 100.0 5.5E-40 1.9E-44 366.2 17.8 248 526-801 15-267 (476)
165 2zmd_A Dual specificity protei 100.0 8.8E-40 3E-44 358.1 18.9 252 527-802 56-322 (390)
166 4hgt_A Casein kinase I isoform 100.0 2.3E-39 7.9E-44 342.2 21.3 266 525-811 7-284 (296)
167 2ozo_A Tyrosine-protein kinase 100.0 7.9E-40 2.7E-44 378.3 19.2 261 529-813 337-604 (613)
168 3gxj_A TGF-beta receptor type- 100.0 4.2E-41 1.4E-45 356.9 7.5 267 526-807 2-297 (303)
169 3dls_A PAS domain-containing s 100.0 4.8E-40 1.7E-44 352.8 15.9 243 525-801 22-275 (335)
170 4eut_A Serine/threonine-protei 100.0 9.4E-40 3.2E-44 359.3 18.4 277 526-808 8-310 (396)
171 3kk8_A Calcium/calmodulin depe 100.0 1.6E-39 5.5E-44 341.2 19.3 252 526-801 5-262 (284)
172 3oz6_A Mitogen-activated prote 100.0 7E-40 2.4E-44 359.8 17.3 270 524-801 6-329 (388)
173 4agu_A Cyclin-dependent kinase 100.0 1.1E-39 3.9E-44 347.2 17.9 269 526-801 2-285 (311)
174 3uzp_A CKI-delta, CKID, casein 100.0 4.3E-39 1.5E-43 340.2 22.1 265 526-811 8-284 (296)
175 4ejn_A RAC-alpha serine/threon 100.0 3.1E-40 1E-44 369.2 14.0 249 526-801 147-405 (446)
176 2ac3_A MAP kinase-interacting 100.0 7.5E-40 2.6E-44 349.4 16.3 266 526-801 11-296 (316)
177 3llt_A Serine/threonine kinase 100.0 1.5E-39 5.1E-44 353.8 18.9 277 514-801 22-356 (360)
178 3g33_A Cell division protein k 100.0 2.5E-39 8.5E-44 343.9 20.0 269 525-801 7-297 (308)
179 2eue_A Carbon catabolite derep 100.0 6E-40 2E-44 342.7 14.7 247 526-801 12-263 (275)
180 3n9x_A Phosphotransferase; mal 100.0 2.3E-39 8E-44 360.0 20.3 201 526-731 25-254 (432)
181 1byg_A CSK, protein (C-termina 100.0 6.8E-40 2.3E-44 342.8 15.0 252 526-808 20-274 (278)
182 1jl5_A Outer protein YOPM; leu 100.0 7.8E-39 2.7E-43 356.8 24.3 358 13-430 4-377 (454)
183 2h8h_A Proto-oncogene tyrosine 100.0 2.4E-40 8.2E-45 377.3 12.3 262 525-812 265-528 (535)
184 2v62_A Serine/threonine-protei 100.0 4.8E-40 1.6E-44 355.0 14.0 266 526-806 36-327 (345)
185 2r5t_A Serine/threonine-protei 100.0 5.2E-40 1.8E-44 356.3 14.2 249 526-801 37-290 (373)
186 1u5q_A Serine/threonine protei 100.0 6.8E-40 2.3E-44 353.1 14.8 247 527-802 54-307 (348)
187 3bhy_A Death-associated protei 100.0 4.2E-39 1.4E-43 337.8 20.5 252 526-801 4-266 (283)
188 1xbb_A Tyrosine-protein kinase 100.0 1.5E-39 5.2E-44 342.6 17.1 261 526-811 15-283 (291)
189 3ttj_A Mitogen-activated prote 100.0 3.4E-39 1.2E-43 360.8 20.9 266 525-801 60-356 (464)
190 1fvr_A Tyrosine-protein kinase 100.0 1.4E-39 4.8E-44 348.9 17.0 259 527-811 25-304 (327)
191 2jam_A Calcium/calmodulin-depe 100.0 2.8E-39 9.4E-44 342.9 19.0 251 526-801 8-262 (304)
192 2qr7_A Ribosomal protein S6 ki 100.0 6.1E-40 2.1E-44 352.4 13.9 254 525-802 20-279 (342)
193 2jii_A Serine/threonine-protei 100.0 1.7E-39 5.7E-44 352.0 17.3 266 527-811 42-340 (352)
194 1o6v_A Internalin A; bacterial 100.0 3.6E-38 1.2E-42 354.9 28.6 343 2-407 51-393 (466)
195 2acx_A G protein-coupled recep 100.0 1.9E-39 6.7E-44 366.1 18.1 251 526-801 183-445 (576)
196 2yfx_A Tyrosine-protein kinase 100.0 7E-40 2.4E-44 351.3 13.8 259 526-807 29-304 (327)
197 3gbz_A Kinase, CMGC CDK; ssgci 100.0 2.3E-39 7.8E-44 347.2 17.7 271 523-801 30-319 (329)
198 3i6u_A CDS1, serine/threonine- 100.0 3.5E-39 1.2E-43 356.9 19.6 254 524-801 132-400 (419)
199 3rp9_A Mitogen-activated prote 100.0 3E-39 1E-43 362.8 19.1 195 526-725 52-280 (458)
200 1ua2_A CAK, cell division prot 100.0 2.2E-39 7.5E-44 350.0 17.3 272 523-801 6-292 (346)
201 2rku_A Serine/threonine-protei 100.0 2E-39 6.8E-44 342.3 16.4 250 526-802 14-267 (294)
202 2y7j_A Phosphorylase B kinase 100.0 6.3E-39 2.2E-43 348.4 20.7 258 520-801 87-360 (365)
203 3is5_A Calcium-dependent prote 100.0 2.5E-39 8.6E-44 339.6 16.8 251 526-801 21-279 (285)
204 3mwu_A Calmodulin-domain prote 100.0 5.2E-39 1.8E-43 363.3 20.5 251 526-801 21-277 (486)
205 2vgo_A Serine/threonine-protei 100.0 3.2E-39 1.1E-43 338.8 17.4 247 526-801 13-263 (284)
206 3pg1_A Mitogen-activated prote 100.0 6E-39 2E-43 349.3 19.6 278 516-801 11-317 (362)
207 1t4h_A Serine/threonine-protei 100.0 1.1E-38 3.8E-43 335.8 21.0 248 527-801 26-283 (290)
208 3ll6_A Cyclin G-associated kin 100.0 5E-39 1.7E-43 346.4 18.7 258 526-810 27-311 (337)
209 4fl3_A Tyrosine-protein kinase 100.0 3.1E-39 1.1E-43 374.1 18.0 252 533-809 375-633 (635)
210 1nxk_A MAP kinase-activated pr 100.0 1.3E-38 4.4E-43 349.8 22.0 251 526-802 60-323 (400)
211 2owb_A Serine/threonine-protei 100.0 2.3E-39 7.7E-44 348.2 15.5 249 526-801 40-292 (335)
212 2a19_B Interferon-induced, dou 100.0 2.2E-39 7.4E-44 340.2 15.0 252 525-811 9-278 (284)
213 2j7t_A Serine/threonine-protei 100.0 1.2E-39 4.1E-44 345.5 13.0 253 526-801 18-276 (302)
214 3nyv_A Calmodulin-domain prote 100.0 4.2E-39 1.4E-43 364.3 17.7 252 526-802 25-283 (484)
215 3nsz_A CK II alpha, casein kin 100.0 9.4E-39 3.2E-43 343.1 19.4 263 526-801 35-320 (330)
216 2h6d_A 5'-AMP-activated protei 100.0 4.9E-39 1.7E-43 336.0 16.6 248 526-801 10-262 (276)
217 3com_A Serine/threonine-protei 100.0 6.5E-39 2.2E-43 341.8 17.8 252 525-801 27-279 (314)
218 3c4z_A Rhodopsin kinase; Ser/T 100.0 7.1E-39 2.4E-43 361.0 18.9 254 526-801 184-449 (543)
219 3mi9_A Cell division protein k 100.0 1.2E-38 4.2E-43 345.2 20.1 271 526-801 16-312 (351)
220 2clq_A Mitogen-activated prote 100.0 7.7E-39 2.6E-43 338.0 17.8 251 528-801 23-279 (295)
221 4aaa_A Cyclin-dependent kinase 100.0 3.4E-39 1.2E-43 346.5 15.3 269 525-801 23-307 (331)
222 3q5i_A Protein kinase; CDPK, m 100.0 1.5E-38 5.2E-43 361.0 21.3 252 525-801 34-302 (504)
223 1u46_A ACK-1, activated CDC42 100.0 1.2E-39 3.9E-44 343.6 11.1 259 526-807 17-284 (291)
224 3lij_A Calcium/calmodulin depe 100.0 9.7E-39 3.3E-43 361.7 19.5 251 526-801 36-292 (494)
225 3byv_A Rhoptry kinase; malaria 100.0 1.3E-39 4.4E-44 356.1 11.8 246 526-806 72-367 (377)
226 3eqc_A Dual specificity mitoge 100.0 5.9E-39 2E-43 349.0 16.7 265 526-802 32-326 (360)
227 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-38 1.2E-42 351.8 23.1 354 8-430 29-392 (457)
228 3sv0_A Casein kinase I-like; t 100.0 3.4E-38 1.2E-42 352.4 22.9 265 526-809 6-280 (483)
229 2wtk_C Serine/threonine-protei 100.0 1.3E-38 4.5E-43 337.9 18.6 252 525-801 3-264 (305)
230 1vzo_A Ribosomal protein S6 ki 100.0 3.8E-39 1.3E-43 349.0 14.6 255 526-802 53-323 (355)
231 3a7i_A MST3 kinase, serine/thr 100.0 8.1E-39 2.8E-43 339.2 16.8 251 526-803 21-273 (303)
232 3eb0_A Putative uncharacterize 100.0 2.2E-38 7.7E-43 347.0 20.5 273 523-807 3-330 (383)
233 2pml_X PFPK7, Ser/Thr protein 100.0 8.6E-39 2.9E-43 346.2 16.9 265 526-801 30-323 (348)
234 1cm8_A Phosphorylated MAP kina 100.0 8.6E-39 2.9E-43 347.4 16.9 264 526-801 24-308 (367)
235 3q60_A ROP5B; pseudokinase, tr 100.0 2.6E-39 8.8E-44 353.0 12.4 255 526-801 61-353 (371)
236 3fme_A Dual specificity mitoge 100.0 1.1E-38 3.8E-43 335.9 16.8 251 526-801 6-267 (290)
237 3kvw_A DYRK2, dual specificity 100.0 2.3E-38 7.7E-43 351.3 19.8 197 526-732 96-302 (429)
238 1x8b_A WEE1HU, WEE1-like prote 100.0 9.2E-39 3.1E-43 336.3 15.9 244 526-801 10-280 (289)
239 2ycf_A Serine/threonine-protei 100.0 3.5E-38 1.2E-42 337.2 20.2 253 525-801 8-275 (322)
240 2r3i_A Cell division protein k 100.0 3.3E-38 1.1E-42 333.9 19.7 269 526-801 2-284 (299)
241 3lm5_A Serine/threonine-protei 100.0 1.7E-38 5.7E-43 340.2 17.6 256 523-801 24-288 (327)
242 2xrw_A Mitogen-activated prote 100.0 5.3E-38 1.8E-42 342.3 21.8 266 526-802 24-320 (371)
243 2w5a_A Serine/threonine-protei 100.0 3.2E-39 1.1E-43 338.0 11.2 253 526-803 5-270 (279)
244 2id5_A Lingo-1, leucine rich r 100.0 1.5E-37 5.1E-42 351.5 25.8 348 24-430 14-361 (477)
245 2vwi_A Serine/threonine-protei 100.0 7.9E-39 2.7E-43 339.4 14.3 263 525-801 13-288 (303)
246 1phk_A Phosphorylase kinase; g 100.0 2.7E-38 9.3E-43 334.3 18.3 253 525-801 15-284 (298)
247 3an0_A Dual specificity mitoge 100.0 2.4E-38 8.2E-43 341.4 17.9 251 526-801 50-311 (340)
248 3pfq_A PKC-B, PKC-beta, protei 100.0 1.3E-38 4.6E-43 371.3 16.8 250 525-801 339-598 (674)
249 3qyz_A Mitogen-activated prote 100.0 3.7E-38 1.3E-42 342.9 18.7 268 526-801 26-314 (364)
250 2x7f_A TRAF2 and NCK-interacti 100.0 1.1E-38 3.7E-43 342.1 14.2 257 520-801 17-287 (326)
251 2j0j_A Focal adhesion kinase 1 100.0 1.7E-38 5.9E-43 369.2 16.1 258 526-808 389-652 (656)
252 3cek_A Dual specificity protei 100.0 3.8E-38 1.3E-42 335.6 17.4 254 525-802 26-294 (313)
253 2wei_A Calmodulin-domain prote 100.0 7.9E-38 2.7E-42 328.7 19.0 254 523-801 18-277 (287)
254 2fst_X Mitogen-activated prote 100.0 1.8E-38 6.1E-43 344.5 13.8 264 525-801 27-312 (367)
255 4e7w_A Glycogen synthase kinas 100.0 7.4E-38 2.5E-42 343.5 18.8 265 526-801 39-322 (394)
256 2i6l_A Mitogen-activated prote 100.0 6.1E-38 2.1E-42 335.3 17.6 269 526-801 10-306 (320)
257 1zy4_A Serine/threonine-protei 100.0 4.4E-38 1.5E-42 333.6 16.3 253 526-801 5-284 (303)
258 1blx_A Cyclin-dependent kinase 100.0 1.6E-37 5.3E-42 333.1 20.7 269 525-801 9-297 (326)
259 1j1b_A Glycogen synthase kinas 100.0 7.3E-38 2.5E-42 346.4 18.5 263 527-801 54-337 (420)
260 1wak_A Serine/threonine-protei 100.0 6.7E-38 2.3E-42 345.8 18.0 266 526-801 36-392 (397)
261 4exu_A Mitogen-activated prote 100.0 7.9E-38 2.7E-42 340.9 18.1 263 526-801 41-324 (371)
262 2y4i_B KSR2, HKSR2, kinase sup 100.0 5.6E-39 1.9E-43 343.2 8.8 261 525-810 31-305 (319)
263 1z57_A Dual specificity protei 100.0 1.5E-37 5.1E-42 335.2 20.0 265 526-801 13-329 (339)
264 3rgf_A Cyclin-dependent kinase 100.0 6.6E-38 2.3E-42 346.0 17.1 269 527-801 20-334 (405)
265 2b9h_A MAP kinase FUS3, mitoge 100.0 8.2E-38 2.8E-42 339.2 16.5 269 526-801 10-306 (353)
266 3p23_A Serine/threonine-protei 100.0 1.3E-37 4.6E-42 344.6 16.6 251 526-801 23-284 (432)
267 2vx3_A Dual specificity tyrosi 100.0 5.1E-37 1.8E-41 336.1 20.6 200 525-732 52-261 (382)
268 3bz5_A Internalin-J, INLJ; leu 100.0 9.6E-37 3.3E-41 340.3 23.0 358 23-446 20-385 (457)
269 3aln_A Dual specificity mitoge 100.0 2.1E-37 7.2E-42 332.1 16.9 254 526-801 21-286 (327)
270 3e3p_A Protein kinase, putativ 100.0 5.8E-37 2E-41 333.5 20.6 275 520-801 16-315 (360)
271 3fhr_A MAP kinase-activated pr 100.0 1.9E-37 6.6E-42 333.0 16.4 254 525-802 26-289 (336)
272 3o6n_A APL1; leucine-rich repe 100.0 1.5E-36 5.3E-41 333.7 23.9 334 94-452 45-378 (390)
273 2rio_A Serine/threonine-protei 100.0 1.7E-37 6E-42 344.9 16.4 251 528-801 16-296 (434)
274 2iwi_A Serine/threonine-protei 100.0 5.9E-38 2E-42 334.0 12.0 245 522-801 26-284 (312)
275 3coi_A Mitogen-activated prote 100.0 2.4E-37 8.3E-42 335.2 16.3 263 526-801 23-306 (353)
276 2eu9_A Dual specificity protei 100.0 6.7E-37 2.3E-41 332.4 19.7 265 526-801 18-334 (355)
277 3a99_A Proto-oncogene serine/t 100.0 8.3E-38 2.8E-42 333.7 10.9 243 524-801 40-294 (320)
278 1q8y_A SR protein kinase; tran 100.0 2.9E-37 1E-41 337.6 14.6 266 526-801 18-334 (373)
279 2dyl_A Dual specificity mitoge 100.0 5.8E-37 2E-41 327.4 16.0 252 526-801 24-284 (318)
280 3o6n_A APL1; leucine-rich repe 100.0 9.5E-36 3.2E-40 327.4 24.5 311 19-378 43-353 (390)
281 3oja_B Anopheles plasmodium-re 100.0 6.8E-36 2.3E-40 346.6 23.8 335 93-452 50-384 (597)
282 3qa8_A MGC80376 protein; kinas 100.0 8.1E-37 2.8E-41 347.6 13.5 272 526-807 13-309 (676)
283 3uqc_A Probable conserved tran 100.0 9.3E-36 3.2E-40 311.7 18.9 232 527-808 31-266 (286)
284 4fmz_A Internalin; leucine ric 100.0 7.2E-35 2.5E-39 315.2 24.7 307 41-425 40-346 (347)
285 3oja_B Anopheles plasmodium-re 100.0 4.9E-35 1.7E-39 339.4 24.3 312 19-379 49-360 (597)
286 4fmz_A Internalin; leucine ric 100.0 9.3E-35 3.2E-39 314.3 24.7 308 16-401 39-346 (347)
287 3m2w_A MAP kinase-activated pr 100.0 5.5E-35 1.9E-39 308.8 20.4 232 526-802 16-258 (299)
288 2pzi_A Probable serine/threoni 100.0 1.6E-35 5.5E-40 348.1 17.9 241 526-807 79-328 (681)
289 3dzo_A Rhoptry kinase domain; 100.0 9.6E-36 3.3E-40 328.7 13.2 241 526-801 77-364 (413)
290 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-35 1.6E-39 310.7 16.7 255 197-453 50-309 (313)
291 2vuw_A Serine/threonine-protei 100.0 3.5E-35 1.2E-39 315.9 8.1 245 526-801 19-332 (336)
292 2ft3_A Biglycan; proteoglycan, 100.0 6.2E-33 2.1E-37 297.7 22.4 287 70-399 34-331 (332)
293 1xku_A Decorin; proteoglycan, 100.0 2.1E-32 7.1E-37 293.4 24.8 288 70-399 32-330 (330)
294 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-37 9.8E-42 347.9 -14.1 383 21-425 3-440 (461)
295 2ft3_A Biglycan; proteoglycan, 100.0 2.1E-32 7.3E-37 293.5 24.5 312 6-351 13-331 (332)
296 1xku_A Decorin; proteoglycan, 100.0 7E-32 2.4E-36 289.3 26.5 293 19-351 29-330 (330)
297 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-32 6.2E-37 290.8 15.0 250 172-426 51-306 (313)
298 1z7x_W Ribonuclease inhibitor; 100.0 9.8E-36 3.4E-40 335.3 -10.8 358 45-427 3-413 (461)
299 2z66_A Variable lymphocyte rec 100.0 9.4E-30 3.2E-34 269.7 16.5 254 198-452 29-291 (306)
300 2z66_A Variable lymphocyte rec 100.0 1E-29 3.5E-34 269.4 16.3 277 97-430 10-292 (306)
301 2z80_A TOLL-like receptor 2, v 100.0 2.1E-29 7.3E-34 272.6 18.0 294 44-354 30-332 (353)
302 3zyi_A Leucine-rich repeat-con 100.0 6.4E-29 2.2E-33 278.3 21.7 232 196-429 74-307 (452)
303 3zyj_A Leucine-rich repeat-con 100.0 8E-29 2.7E-33 276.4 22.3 231 197-429 64-296 (440)
304 2z80_A TOLL-like receptor 2, v 100.0 1.7E-29 5.7E-34 273.5 15.2 279 117-430 30-319 (353)
305 3ogk_B Coronatine-insensitive 100.0 6.6E-32 2.3E-36 314.2 -7.5 410 10-427 62-528 (592)
306 3zyi_A Leucine-rich repeat-con 100.0 7.4E-28 2.5E-32 269.6 25.5 245 48-329 57-303 (452)
307 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4E-33 258.3 17.3 233 197-430 32-266 (285)
308 3zyj_A Leucine-rich repeat-con 100.0 7.3E-28 2.5E-32 268.7 24.6 246 47-329 45-292 (440)
309 1ozn_A Reticulon 4 receptor; N 100.0 3.6E-28 1.2E-32 254.6 20.6 254 72-361 14-269 (285)
310 4fcg_A Uncharacterized protein 100.0 1.4E-28 4.9E-33 262.4 17.0 223 199-425 83-314 (328)
311 3g06_A SSPH2 (leucine-rich rep 100.0 8.1E-28 2.8E-32 275.8 24.3 268 22-364 41-308 (622)
312 3g06_A SSPH2 (leucine-rich rep 100.0 7.1E-28 2.4E-32 276.3 22.6 269 45-388 40-308 (622)
313 3o53_A Protein LRIM1, AGAP0063 100.0 1.8E-29 6.2E-34 268.5 7.1 266 48-358 13-281 (317)
314 3oja_A Leucine-rich immune mol 100.0 1.7E-29 5.7E-34 284.4 5.4 217 169-425 32-250 (487)
315 4fcg_A Uncharacterized protein 100.0 6.3E-28 2.2E-32 257.4 17.3 182 218-401 124-314 (328)
316 3ogk_B Coronatine-insensitive 100.0 6.5E-30 2.2E-34 297.4 1.1 397 19-422 110-548 (592)
317 3o53_A Protein LRIM1, AGAP0063 100.0 1E-29 3.6E-34 270.3 2.5 266 99-407 15-282 (317)
318 4azs_A Methyltransferase WBDD; 99.9 2.8E-29 9.7E-34 286.2 4.1 185 535-729 242-438 (569)
319 1wwl_A Monocyte differentiatio 99.9 9.7E-29 3.3E-33 262.2 7.4 202 116-353 93-309 (312)
320 1wwl_A Monocyte differentiatio 99.9 5.4E-29 1.9E-33 264.2 3.7 202 219-426 93-310 (312)
321 3oja_A Leucine-rich immune mol 99.9 5E-27 1.7E-31 264.2 11.6 235 94-348 34-270 (487)
322 2z62_A TOLL-like receptor 4, v 99.9 7.7E-26 2.6E-30 235.7 16.6 227 175-431 11-243 (276)
323 2p1m_B Transport inhibitor res 99.9 1.9E-28 6.5E-33 285.2 -5.6 397 16-424 61-518 (594)
324 2z62_A TOLL-like receptor 4, v 99.9 2.3E-25 7.9E-30 232.0 18.2 226 145-404 10-240 (276)
325 1p9a_G Platelet glycoprotein I 99.9 2E-25 6.8E-30 233.5 17.3 206 217-428 6-211 (290)
326 2o6q_A Variable lymphocyte rec 99.9 8.3E-25 2.8E-29 226.8 19.3 206 222-430 17-223 (270)
327 1p9a_G Platelet glycoprotein I 99.9 6.4E-25 2.2E-29 229.6 16.3 208 240-452 5-212 (290)
328 3en9_A Glycoprotease, O-sialog 99.9 8E-26 2.7E-30 256.3 7.8 186 530-730 339-539 (540)
329 3rfs_A Internalin B, repeat mo 99.9 6.3E-25 2.1E-29 227.9 10.9 165 219-413 83-247 (272)
330 2o6q_A Variable lymphocyte rec 99.9 9.7E-24 3.3E-28 218.8 19.7 203 172-402 17-219 (270)
331 3rfs_A Internalin B, repeat mo 99.9 1.5E-24 5.1E-29 225.1 12.1 180 243-431 61-241 (272)
332 2p1m_B Transport inhibitor res 99.9 1.7E-27 5.8E-32 277.1 -11.8 403 17-425 101-544 (594)
333 2xwt_C Thyrotropin receptor; s 99.9 8.9E-24 3E-28 214.9 13.5 197 197-422 31-236 (239)
334 2ca6_A RAN GTPase-activating p 99.9 9.1E-26 3.1E-30 247.3 -2.8 189 216-404 89-319 (386)
335 4glp_A Monocyte differentiatio 99.9 4.2E-24 1.4E-28 226.3 9.8 230 171-426 64-308 (310)
336 3goz_A Leucine-rich repeat-con 99.9 6E-25 2.1E-29 238.2 3.2 260 2-284 3-299 (362)
337 3goz_A Leucine-rich repeat-con 99.9 7.4E-25 2.5E-29 237.5 1.6 59 26-84 3-66 (362)
338 4glp_A Monocyte differentiatio 99.9 2.1E-23 7.2E-28 221.0 12.3 233 142-401 64-307 (310)
339 2xwt_C Thyrotropin receptor; s 99.9 7.1E-23 2.4E-27 208.2 15.0 197 171-398 31-236 (239)
340 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.2E-27 213.2 17.0 194 41-282 37-230 (308)
341 4ay9_X Follicle-stimulating ho 99.9 1.7E-22 5.9E-27 217.7 16.6 167 228-398 87-256 (350)
342 2ca6_A RAN GTPase-activating p 99.9 1E-24 3.5E-29 238.9 -1.0 194 93-308 93-318 (386)
343 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.7E-28 226.3 7.0 224 46-303 48-282 (336)
344 3m19_A Variable lymphocyte rec 99.9 2.3E-22 7.9E-27 205.9 16.4 175 224-401 17-192 (251)
345 3m19_A Variable lymphocyte rec 99.9 2.8E-22 9.6E-27 205.3 16.5 183 245-430 14-197 (251)
346 1h6u_A Internalin H; cell adhe 99.9 1.1E-22 3.6E-27 215.0 13.5 191 221-426 41-231 (308)
347 2ast_B S-phase kinase-associat 99.9 8.9E-24 3E-28 227.0 3.2 228 198-430 71-311 (336)
348 1zar_A RIO2 kinase; serine kin 99.9 8.5E-23 2.9E-27 212.0 10.0 152 520-702 83-252 (282)
349 4ay9_X Follicle-stimulating ho 99.9 1E-21 3.5E-26 211.6 15.8 238 175-422 13-256 (350)
350 2o6s_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 184.2 17.3 161 198-365 29-190 (208)
351 3cvr_A Invasion plasmid antige 99.8 9E-21 3.1E-25 214.6 13.5 169 221-413 80-255 (571)
352 3cvr_A Invasion plasmid antige 99.8 2.6E-20 9E-25 210.8 14.6 183 221-430 59-248 (571)
353 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-20 4.8E-25 188.0 8.4 154 273-429 15-170 (220)
354 2o6s_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 176.9 17.8 190 121-354 10-199 (208)
355 2v9t_B SLIT homolog 2 protein 99.8 2.7E-20 9.3E-25 186.0 9.1 136 294-429 33-169 (220)
356 1h6t_A Internalin B; cell adhe 99.8 5E-20 1.7E-24 192.6 11.4 170 219-401 44-213 (291)
357 1m9s_A Internalin B; cell inva 99.8 1E-19 3.6E-24 208.4 14.7 192 20-259 20-211 (605)
358 2xot_A Amphoterin-induced prot 99.8 7.5E-20 2.6E-24 197.8 11.7 179 224-428 21-205 (361)
359 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.9E-24 207.2 13.7 191 45-283 21-211 (605)
360 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.7E-24 189.3 12.4 187 226-427 29-215 (291)
361 2v9t_B SLIT homolog 2 protein 99.8 1.8E-19 6.2E-24 180.0 12.0 155 296-452 14-169 (220)
362 2xot_A Amphoterin-induced prot 99.8 4.7E-19 1.6E-23 191.6 13.3 173 175-352 22-201 (361)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-19 1.3E-23 177.6 11.1 156 224-405 14-170 (220)
364 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.8E-23 175.5 13.8 155 248-429 22-176 (229)
365 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.9E-23 175.4 13.0 155 295-452 21-176 (229)
366 1dce_A Protein (RAB geranylger 99.8 5.1E-21 1.8E-25 218.0 -5.5 140 18-184 346-499 (567)
367 1w8a_A SLIT protein; signaling 99.8 3E-19 1E-23 174.3 7.8 128 272-402 11-140 (192)
368 1xeu_A Internalin C; cellular 99.8 7E-19 2.4E-23 180.9 9.7 168 68-282 18-185 (263)
369 3sb4_A Hypothetical leucine ri 99.8 7.3E-19 2.5E-23 187.6 9.1 263 68-394 48-327 (329)
370 4b8c_D Glucose-repressible alc 99.8 5.8E-19 2E-23 207.5 8.3 196 142-374 173-369 (727)
371 1xeu_A Internalin C; cellular 99.8 4.1E-19 1.4E-23 182.6 5.9 168 220-401 18-185 (263)
372 4ezg_A Putative uncharacterize 99.7 1.4E-18 4.7E-23 170.5 8.6 150 269-425 44-194 (197)
373 1zth_A RIO1 serine protein kin 99.7 7.3E-19 2.5E-23 180.2 6.4 138 528-677 48-219 (258)
374 1dce_A Protein (RAB geranylger 99.7 3.2E-20 1.1E-24 211.4 -4.7 180 218-402 346-547 (567)
375 4ezg_A Putative uncharacterize 99.7 3.6E-18 1.2E-22 167.6 10.5 131 42-184 41-172 (197)
376 4b8c_D Glucose-repressible alc 99.7 4.1E-19 1.4E-23 208.8 3.1 163 226-398 206-369 (727)
377 1w8a_A SLIT protein; signaling 99.7 9.7E-18 3.3E-22 163.6 11.9 155 296-452 11-166 (192)
378 3sb4_A Hypothetical leucine ri 99.7 7.6E-18 2.6E-22 179.7 11.4 287 19-323 23-328 (329)
379 4fdw_A Leucine rich hypothetic 99.7 4.5E-16 1.6E-20 169.4 22.9 266 19-329 111-383 (401)
380 2wfh_A SLIT homolog 2 protein 99.7 8.1E-18 2.8E-22 164.1 7.4 131 296-429 13-143 (193)
381 4fs7_A Uncharacterized protein 99.7 7.6E-16 2.6E-20 168.5 23.5 336 8-417 58-393 (394)
382 4fdw_A Leucine rich hypothetic 99.7 8.8E-16 3E-20 167.1 21.3 265 93-401 112-383 (401)
383 2o6r_A Variable lymphocyte rec 99.7 2E-16 6.7E-21 152.3 10.5 134 295-430 9-142 (177)
384 4gyi_A RIO2 kinase; protein ki 99.6 7.7E-17 2.6E-21 170.7 6.9 138 528-677 96-265 (397)
385 4fs7_A Uncharacterized protein 99.6 4.2E-15 1.5E-19 162.6 20.9 318 57-422 59-376 (394)
386 2ell_A Acidic leucine-rich nuc 99.6 1.4E-16 4.6E-21 152.0 7.8 111 290-401 46-160 (168)
387 2ell_A Acidic leucine-rich nuc 99.6 2.6E-16 9E-21 149.9 8.1 134 292-427 23-162 (168)
388 2wfh_A SLIT homolog 2 protein 99.6 7.9E-16 2.7E-20 149.9 10.8 128 272-402 13-140 (193)
389 2je0_A Acidic leucine-rich nuc 99.6 5.3E-16 1.8E-20 144.6 7.6 128 20-150 16-148 (149)
390 2je0_A Acidic leucine-rich nuc 99.6 4.6E-16 1.6E-20 145.0 5.7 126 270-396 18-148 (149)
391 1a9n_A U2A', U2A'; complex (nu 99.6 7.9E-16 2.7E-20 147.8 7.5 145 1-154 1-152 (176)
392 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.3E-19 139.6 14.1 131 23-186 9-139 (177)
393 1a9n_A U2A', U2A'; complex (nu 99.6 1E-15 3.4E-20 147.1 5.0 132 289-425 15-153 (176)
394 1ds9_A Outer arm dynein; leuci 99.5 5.5E-17 1.9E-21 159.2 -6.2 134 241-378 14-154 (198)
395 1ds9_A Outer arm dynein; leuci 99.5 5.1E-17 1.7E-21 159.5 -7.9 155 265-425 14-185 (198)
396 4gt6_A Cell surface protein; l 99.5 1.6E-12 5.6E-17 142.0 25.2 336 8-376 50-390 (394)
397 3g39_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 134.7 8.7 109 295-429 11-119 (170)
398 3g39_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 132.9 9.3 105 270-401 10-115 (170)
399 2r9u_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 133.7 8.5 104 296-401 15-118 (174)
400 2r9u_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 132.5 8.7 110 318-430 14-123 (174)
401 4gt6_A Cell surface protein; l 99.4 6.6E-12 2.3E-16 137.2 23.5 302 92-424 85-390 (394)
402 3un9_A NLR family member X1; l 99.4 2.8E-15 9.7E-20 161.5 -5.2 165 21-186 72-254 (372)
403 3un9_A NLR family member X1; l 99.4 3.8E-15 1.3E-19 160.5 -5.7 126 118-266 126-260 (372)
404 2ifg_A High affinity nerve gro 99.3 2.3E-12 7.7E-17 138.4 8.2 103 297-401 12-116 (347)
405 3tm0_A Aminoglycoside 3'-phosp 99.3 9.3E-12 3.2E-16 127.8 11.6 146 523-675 10-212 (263)
406 4h09_A Hypothetical leucine ri 99.3 3.6E-10 1.2E-14 122.7 24.8 129 215-347 211-340 (379)
407 2ifg_A High affinity nerve gro 99.3 2.1E-12 7.2E-17 138.6 6.6 132 319-453 11-146 (347)
408 4h09_A Hypothetical leucine ri 99.2 5.1E-10 1.7E-14 121.5 21.3 313 42-411 43-355 (379)
409 1nd4_A Aminoglycoside 3'-phosp 99.1 6.1E-11 2.1E-15 121.6 9.0 136 528-675 21-213 (264)
410 3dxp_A Putative acyl-COA dehyd 98.9 1.7E-09 5.8E-14 116.4 10.1 141 532-676 43-248 (359)
411 2ra8_A Uncharacterized protein 98.9 3.3E-10 1.1E-14 120.7 3.2 160 93-280 171-341 (362)
412 2ra8_A Uncharacterized protein 98.9 1.3E-10 4.5E-15 123.9 -0.1 182 218-423 136-341 (362)
413 3sg8_A APH(2'')-ID; antibiotic 98.9 1.2E-09 4.1E-14 114.6 4.9 188 532-730 25-288 (304)
414 3r70_A Aminoglycoside phosphot 98.6 2.3E-07 7.7E-12 97.8 12.2 136 528-676 38-237 (320)
415 1io0_A Tropomodulin; LRR prote 98.6 1.1E-08 3.9E-13 98.2 1.3 62 94-155 93-164 (185)
416 1io0_A Tropomodulin; LRR prote 98.5 1.9E-08 6.7E-13 96.5 0.2 124 112-258 30-164 (185)
417 3rw6_A Nuclear RNA export fact 98.5 1.7E-08 5.8E-13 101.7 -0.2 80 67-148 168-257 (267)
418 3d1u_A Putative fructosamine-3 98.4 1.8E-06 6.2E-11 88.9 13.8 139 531-675 19-215 (288)
419 3rw6_A Nuclear RNA export fact 98.4 2.3E-08 7.8E-13 100.8 -0.5 80 337-418 167-257 (267)
420 4gkh_A Aminoglycoside 3'-phosp 98.4 1.1E-06 3.6E-11 90.3 12.0 134 534-675 31-222 (272)
421 3tdw_A Gentamicin resistance p 98.4 1.4E-06 4.8E-11 90.9 12.2 136 532-676 24-224 (306)
422 3ats_A Putative uncharacterize 98.2 1.6E-06 5.6E-11 92.9 8.4 79 533-611 26-121 (357)
423 3ovc_A Hygromycin-B 4-O-kinase 98.2 3.7E-06 1.3E-10 89.8 10.8 74 531-610 45-121 (362)
424 2olc_A MTR kinase, methylthior 98.0 3.2E-05 1.1E-09 84.0 11.8 75 532-608 35-120 (397)
425 3e4g_A ATP synthase subunit S, 97.9 5.3E-06 1.8E-10 77.3 3.2 59 21-79 61-124 (176)
426 2q83_A YTAA protein; 2635576, 97.9 4.5E-05 1.5E-09 81.0 10.6 138 533-675 38-251 (346)
427 3e4g_A ATP synthase subunit S, 97.8 5.7E-06 2E-10 77.1 2.6 34 198-231 62-95 (176)
428 3f7w_A Putative fructosamine-3 97.7 0.00023 8E-09 73.3 13.0 77 529-609 17-96 (288)
429 3jr1_A Putative fructosamine-3 97.7 0.00015 5.1E-09 75.2 11.3 136 532-672 41-232 (312)
430 1pgv_A TMD-1, tropomodulin TMD 97.6 1.1E-05 3.9E-10 76.5 0.6 121 115-258 38-170 (197)
431 1pgv_A TMD-1, tropomodulin TMD 97.4 2.3E-05 7.8E-10 74.5 0.6 46 139-185 38-84 (197)
432 2pyw_A Uncharacterized protein 97.4 0.00045 1.6E-08 75.4 10.8 78 645-726 231-313 (420)
433 3dxq_A Choline/ethanolamine ki 97.4 0.00044 1.5E-08 71.7 9.8 71 532-610 23-95 (301)
434 2ppq_A HSK, HK, homoserine kin 97.4 0.00058 2E-08 71.6 10.8 159 514-675 4-216 (322)
435 3csv_A Aminoglycoside phosphot 97.2 0.00095 3.3E-08 70.3 10.3 139 533-676 24-217 (333)
436 1zyl_A Hypothetical protein YI 97.2 0.0039 1.3E-07 65.3 13.9 158 514-675 8-222 (328)
437 2qg7_A Ethanolamine kinase PV0 97.1 0.0018 6.3E-08 70.8 10.8 73 533-610 114-188 (458)
438 1nw1_A Choline kinase (49.2 KD 97.0 0.0012 4E-08 72.0 8.9 71 533-609 79-158 (429)
439 3rfe_A Platelet glycoprotein I 97.0 0.00081 2.8E-08 59.6 5.9 58 368-427 12-70 (130)
440 2yle_A Protein spire homolog 1 97.0 0.0047 1.6E-07 58.8 10.8 104 609-730 34-137 (229)
441 3feg_A Choline/ethanolamine ki 96.9 0.0022 7.6E-08 68.2 9.6 138 533-675 56-253 (379)
442 3c5i_A Choline kinase; choline 96.8 0.0017 5.7E-08 69.5 7.1 72 533-609 39-120 (369)
443 3rfe_A Platelet glycoprotein I 96.7 0.002 6.7E-08 57.1 5.6 37 119-155 32-68 (130)
444 3i1a_A Spectinomycin phosphotr 96.3 0.021 7.2E-07 60.0 12.0 66 538-610 34-108 (339)
445 3f2s_A CK, chetk-alpha, cholin 96.3 0.0082 2.8E-07 64.1 8.4 139 533-675 58-279 (401)
446 3mes_A Choline kinase; malaria 96.0 0.0094 3.2E-07 64.3 7.6 72 533-609 76-156 (424)
447 3g15_A CK, chetk-alpha, cholin 94.0 0.12 4.1E-06 55.5 8.8 29 647-675 245-279 (401)
448 4ann_A ESSB; membrane protein, 86.1 1.8 6.1E-05 41.1 7.5 129 573-737 36-165 (215)
449 2jwa_A Receptor tyrosine-prote 81.3 1.1 3.9E-05 30.1 2.8 10 472-481 13-22 (44)
450 4ano_A ESSB; membrane protein, 79.9 5.5 0.00019 37.9 8.2 116 581-732 48-165 (219)
451 3cxl_A N-chimerin; SH2, RHO-GA 73.4 0.34 1.2E-05 52.9 -2.4 59 531-592 146-213 (463)
452 2l2t_A Receptor tyrosine-prote 72.3 2.3 8E-05 28.6 2.3 6 473-478 12-17 (44)
453 2lz0_A Uncharacterized protein 54.5 22 0.00076 28.9 5.7 46 209-255 8-53 (100)
454 2lz0_A Uncharacterized protein 46.8 39 0.0013 27.4 6.0 41 37-78 12-52 (100)
455 2k1k_A Ephrin type-A receptor 45.0 9.4 0.00032 24.8 1.5 13 473-485 13-25 (38)
456 2x6h_A GH13170P, VPS34, phosph 44.2 2.1E+02 0.0072 32.3 13.3 45 624-675 529-575 (696)
457 3ls8_A Phosphatidylinositol 3- 36.3 3.5E+02 0.012 29.9 13.3 46 623-675 454-501 (614)
458 2lx0_A Membrane fusion protein 24.7 48 0.0016 19.3 2.0 16 481-496 14-29 (32)
459 1cja_A Protein (actin-fragmin 22.9 1.2E+02 0.0042 30.7 6.1 76 597-676 156-237 (342)
460 2l6w_A Beta-type platelet-deri 27.0 20 0.00068 23.2 0.0 14 484-497 22-35 (39)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-57 Score=544.06 Aligned_cols=453 Identities=32% Similarity=0.530 Sum_probs=327.1
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|.+|++++.+|. |+++++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|.. .+++|++|++++|++
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc
Confidence 34555555555554 555555555555555555555555555555555555555555444433 455555555555555
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCcc-ccCCCCCCEEEccCCcCC-CCcC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPST-FGNLRNLEWLTLYDNNLT-SSTL 159 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~n~i~-~~~~ 159 (824)
++..+......+++|++|+|++|++++.+|..|..+++|++|+|++|++++.+|.. |.++++|++|++++|+++ .++.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 53322222222466667777777666666666666677777777777666555544 666666666766666665 2221
Q ss_pred ccc-------------------ccccCCC--CCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCC
Q 040845 160 DLS-------------------FLSSLSN--CKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEIT 218 (824)
Q Consensus 160 ~~~-------------------~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~ 218 (824)
.+. .+..+.. +++|++|++++|.+.+..|..+.. .++|+.|++++|++++.+|..+.
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGG
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCCcccCcccHHHh
Confidence 110 0111222 455666666666655555554432 34677777777777777777777
Q ss_pred CCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEE
Q 040845 219 NLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVL 298 (824)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 298 (824)
.+++|+.|++++|.+.+..|..|..+++|++|++++|++++..|..+..+++|+.|++++|++++..|..++.+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 77777777777777777777777777788888888888877777778888888888888888887788888888888888
Q ss_pred EcCCCCCC-CCCCcccccccccccccccccccCcCCccc-----------------------------------------
Q 040845 299 SLGSNELT-SIPLNFWSLKDILDLNLSSNCFSGPLPLEI----------------------------------------- 336 (824)
Q Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~----------------------------------------- 336 (824)
+|++|+++ .+|..+..+++|+.|++++|++.+.+|..+
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 88888887 677778888888888888888876666433
Q ss_pred -----------------------------cccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCcccccc
Q 040845 337 -----------------------------RNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDL 387 (824)
Q Consensus 337 -----------------------------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 387 (824)
..+++|+.|||++|++++.+|..|+.+++|+.|+|++|++++.+|..|+.+
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 335678889999999999999999999999999999999999999999999
Q ss_pred ccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCCCccccccccccCCccccCCCCCCCCCCCCc
Q 040845 388 ISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSPNLQVPPCKAS 462 (824)
Q Consensus 388 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~c~~~ 462 (824)
++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|..+++..+...+|.|||.+||.|. ++|...
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~ 751 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPS 751 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSC
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999884 367644
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=3.4e-54 Score=449.53 Aligned_cols=261 Identities=29% Similarity=0.456 Sum_probs=218.8
Q ss_pred ccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
++|.+.+.||+|+||+||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 56888899999999999999864 478899999986655667889999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCC------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 040845 601 VLEYMPHGSLEKYLHSSN------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHL 668 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 668 (824)
||||+++|+|.++++..+ ..+++.+++.++.|||+||+||| +++|+||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEE
Confidence 999999999999997642 46899999999999999999999 899999999999999999999999
Q ss_pred eecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhC
Q 040845 669 SDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 669 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
+|||+|+.....+.........||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.... .....+...
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~--~~~~~i~~~- 246 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN--EVIECITQG- 246 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HHHHHHHHT-
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH--HHHHHHHcC-
Confidence 99999987654444434445569999999999999999999999999999999999 89999764221 111111110
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
.....|..|+.++.+||.+||+.||++||||+|+++.|+++.++.+
T Consensus 247 -----------------~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 247 -----------------RVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp -----------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred -----------------CCCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 0112234577889999999999999999999999999999876543
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=9.8e-54 Score=452.47 Aligned_cols=260 Identities=28% Similarity=0.461 Sum_probs=210.9
Q ss_pred ccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
++|.+.+.||+|+||+||+|+++ +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 46777889999999999999875 478899999976655667889999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCC--------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcE
Q 040845 601 VLEYMPHGSLEKYLHSSN--------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVA 666 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~ 666 (824)
||||+++|+|.++++... ..+++.+++.|+.|||+||+||| +++||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcE
Confidence 999999999999997643 35899999999999999999999 8999999999999999999999
Q ss_pred EEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhh
Q 040845 667 HLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVND 745 (824)
Q Consensus 667 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~ 745 (824)
||+|||+|+.....+.....+...||+.|||||++.+..++.++|||||||++|||+| |+.||.+....+ ....+..
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~--~~~~i~~ 275 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTE--AIDCITQ 275 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHH--HHHHHHH
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHH--HHHHHHc
Confidence 9999999987755444444455679999999999999999999999999999999999 899997632211 1111111
Q ss_pred hCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 746 CLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
..+...|..|++++.+||.+||+.||++||||+||+++|+.+.++.
T Consensus 276 ------------------g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 276 ------------------GRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp ------------------TCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred ------------------CCCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCC
Confidence 0112223467788999999999999999999999999999987653
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-53 Score=441.37 Aligned_cols=264 Identities=27% Similarity=0.448 Sum_probs=210.1
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.+++.+.+.||+|+||+||+|+++ ..||||+++... .+..+.|.+|++++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence 467888999999999999999876 369999986442 3345789999999999999999999999865 56799999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++|+|.++++.....+++.++..|+.|||+||+||| +++||||||||+|||+++++.+||+|||+|+........
T Consensus 112 y~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred cCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 99999999999877778999999999999999999999 899999999999999999999999999999876543333
Q ss_pred cccccccccccccCccCcC---CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 684 MTQTQTLATIGYMAPEYGR---EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
.......||+.|||||++. .+.|+.++|||||||++|||+||+.||.+..... .....+...... +..
T Consensus 189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~-~~~~~~~~~~~~-------p~~- 259 (307)
T 3omv_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMVGRGYAS-------PDL- 259 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHHHTTCCC-------CCS-
T ss_pred eeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcCCCC-------CCc-
Confidence 3445567999999999885 3468999999999999999999999997632211 111111111100 000
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
...+.+|+..+.+||.+||+.||++||||.||+++|+.++.+++
T Consensus 260 ------~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lp 303 (307)
T 3omv_A 260 ------SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ------TTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred ------ccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCC
Confidence 01123567889999999999999999999999999999877664
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-52 Score=496.38 Aligned_cols=435 Identities=34% Similarity=0.514 Sum_probs=364.3
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|++.+|.+++..|. ..+++|++|+|++|++++.+|. ++++++|++|+|++|++++.+|.++.++++|++|+|++|++
T Consensus 183 L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 183 LAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp EECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred EECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence 45566666665553 7888888889999988877776 99999999999999999988999999999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCC-CCCceEeccCccccccCCccccCCCCCCEEEccCCcCC-CCcC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNA-SKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLT-SSTL 159 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~ 159 (824)
++..+.. .+++|++|+|++|++++.+|..+... ++|++|+|++|++++.+|..|+++++|++|++++|.++ .++.
T Consensus 260 ~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 260 VGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp EESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred cCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 8765554 58999999999999999999988876 99999999999999999999999999999999999987 4442
Q ss_pred cccccccCCCCCCCcEEECcCCCCCccCCcccccc-------------------------ccccccEEEeecCcceecCC
Q 040845 160 DLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGN-------------------------LSHSLKNFYMYNCNVSGGIP 214 (824)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-------------------------l~~~L~~L~l~~n~l~~~~~ 214 (824)
..+..+++|++|++++|.+.+..|..+... ...+|++|++++|++++.+|
T Consensus 337 -----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 337 -----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp -----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred -----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 226777888888888888776555443221 13467778888888877888
Q ss_pred ccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCC
Q 040845 215 EEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTF 294 (824)
Q Consensus 215 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 294 (824)
..+.++++|+.|+|++|.+++..|..|..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..+.++++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcEEEcCCCCCC-CCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCc--------------
Q 040845 295 LKVLSLGSNELT-SIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPME-------------- 359 (824)
Q Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------------- 359 (824)
|++|+|++|+++ .+|..+..+++|+.|++++|++.+.+|..+.++++|+.|++++|++++.+|..
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 999999999888 67878888888999999999988888888888999999999988887666543
Q ss_pred --------------------------------------------------------cCCCCCCCeEEccCccccccCCcc
Q 040845 360 --------------------------------------------------------IGSLKNLENLFLEYNRLEGSIPDS 383 (824)
Q Consensus 360 --------------------------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~ 383 (824)
++.+++|+.|+|++|++++.+|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 334577888999999999889999
Q ss_pred ccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCC-CCccccccccccCCcc
Q 040845 384 FGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRG-GSFGNFSAESFKGNEL 447 (824)
Q Consensus 384 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~ 447 (824)
|+.+++|+.|+|++|+++|.+|..+..+++|+.|+|++|+++|.+|.. ..+..+..+.+.+|+.
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999999999999999999999999999999999999999888863 4466677777888864
No 6
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=2e-53 Score=445.77 Aligned_cols=256 Identities=25% Similarity=0.426 Sum_probs=213.7
Q ss_pred ccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
.++++.+.||+|+||+||+|++. +++.||||+++.... ...+.|.+|+.++++++|||||+++|+|.+++..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 34566789999999999999873 468899999865433 34578999999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC
Q 040845 600 LVLEYMPHGSLEKYLHSSN---------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM 664 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~ 664 (824)
+||||+++|+|.+++.... ..+++.++..++.|||+||+||| +++||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCC
Confidence 9999999999999996532 35899999999999999999999 99999999999999999999
Q ss_pred cEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhh
Q 040845 665 VAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWV 743 (824)
Q Consensus 665 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~ 743 (824)
.+||+|||+|+.....+.....+...||+.|||||++.++.|+.++|||||||++|||+| |+.||.+.... .....+
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~--~~~~~i 260 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ--DVVEMI 260 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH--HHHHHH
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH--HHHHHH
Confidence 999999999987755444444455679999999999999999999999999999999999 89998763221 112111
Q ss_pred hhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHH
Q 040845 744 NDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKI 805 (824)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 805 (824)
... ...+.+..|+..+.+||.+||+.||++||||+||+++|+++
T Consensus 261 ~~~------------------~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 261 RNR------------------QVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HTT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HcC------------------CCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 110 11123446788899999999999999999999999999764
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-51 Score=480.43 Aligned_cols=446 Identities=21% Similarity=0.187 Sum_probs=361.9
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|.+|.++++|++|++++|++
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 117 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence 67899999999999999999999999999999988899999999999999999999988899999999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCC--EEEccCCcCCCCcC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLE--WLTLYDNNLTSSTL 159 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~ 159 (824)
+++.... ...+++|++|+|++|++++.....+..+++|++|+|++|++++..+..|+++++|+ +|++++|.++..+.
T Consensus 118 ~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 118 SSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp SCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred ccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 8864332 24689999999999999875544555689999999999999988888889999888 88888888776543
Q ss_pred cccc----------------------------------------------------------------------cccCCC
Q 040845 160 DLSF----------------------------------------------------------------------LSSLSN 169 (824)
Q Consensus 160 ~~~~----------------------------------------------------------------------~~~l~~ 169 (824)
.... ...|..
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~ 276 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc
Confidence 2100 112566
Q ss_pred CCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccc-hhhcCCCCCC
Q 040845 170 CKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIP-ITLGKLQKLQ 248 (824)
Q Consensus 170 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 248 (824)
+++|++|++++|.+..+++ .+. . .++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..|..+++|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~-~l~-~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPS-GLV-G-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp CTTCSEEECTTSCCSCCCS-SCC-S-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccCCCEEeccCCccCCCCh-hhc-c-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 6777777777777765433 221 1 3467777777777777767777777777777777777764443 3477788888
Q ss_pred EEEcccccCcccC--CccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCC-C-cccccccccccccc
Q 040845 249 DVDLEYNQLEGSI--PDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIP-L-NFWSLKDILDLNLS 324 (824)
Q Consensus 249 ~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp-~-~~~~l~~L~~L~l~ 324 (824)
+|++++|.+++.. +..+..+++|++|++++|++.+..+..|..+++|+.|++++|+++..+ . .+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 8888888887655 667788888888888888888888888888888888888888887653 2 37778889999999
Q ss_pred cccccCcCCccccccccchhhhccccccccc---CCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccC
Q 040845 325 SNCFSGPLPLEIRNLKALIEIDFSMNNFSGI---IPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 325 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
+|.+.+..|..+.++++|+.|++++|++++. .+..+..+++|+.|++++|++++..|..|..+++|+.|+|++|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccC
Confidence 9998888888888899999999999998762 3356888899999999999999888888999999999999999999
Q ss_pred CCCcccccCCcccceeeccCCcccCCCCCC-CCccccccccccCCccccCCC
Q 040845 402 GTIPVSLEKLSYLKDLNLSFNKLKGEIPRG-GSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 402 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 452 (824)
+..|..+..++.| .|++++|++++.+|.. ..+.++..+.+.+||+.|+|+
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8889999999999 9999999999877753 446677888999999999876
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-51 Score=495.94 Aligned_cols=443 Identities=21% Similarity=0.202 Sum_probs=363.1
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccc-cccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEI-IHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNS 80 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (824)
|+|++|.|+++.|..|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|.+|.++++|++|+|++|+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 678999999999999999999999999999655455 7889999999999999999998889999999999999999999
Q ss_pred ccc-ccCccccCCCCCccEEEccCCeeeeecC-ccccCCCCCceEeccCccccccCCccccCC--CCCCEEEccCCcCCC
Q 040845 81 LSG-CLSSITDVGLPNLEVLYLWGNNFSGTIP-HFIFNASKLSKLALEMNSFSGFIPSTFGNL--RNLEWLTLYDNNLTS 156 (824)
Q Consensus 81 l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~n~i~~ 156 (824)
+++ .+....+..+++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+ ++|+.|+++.|.++.
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 987 3444334579999999999999987654 579999999999999999998888888887 889999999998876
Q ss_pred CcCcccccccCCCCC------CCcEEECcCCCCCccCCcccccc------------------------------------
Q 040845 157 STLDLSFLSSLSNCK------SLTHISLSNNPLDGILPRTYVGN------------------------------------ 194 (824)
Q Consensus 157 ~~~~~~~~~~l~~l~------~L~~L~Ls~n~l~~~~~~~~~~~------------------------------------ 194 (824)
... ..+..++ +|++|++++|.+.+..+..+...
T Consensus 189 ~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 189 RVS-----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp CCC-----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred ccc-----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 432 1233333 48888888887765544433321
Q ss_pred ccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEE
Q 040845 195 LSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYEL 274 (824)
Q Consensus 195 l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 274 (824)
.+.+|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+.+|.++++|++|+|++|++++..+..|..+++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 13578888888888888888888888888888888888887778888888888888888888887778888888888888
Q ss_pred EccCccccccCCccccCCCCCcEEEcCCCCCCCCCC-------------------c----------------------cc
Q 040845 275 ELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL-------------------N----------------------FW 313 (824)
Q Consensus 275 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-------------------~----------------------~~ 313 (824)
++++|++....+..|.++++|++|+|++|.++.++. . +.
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~ 423 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHT
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhh
Confidence 888888887777788888888888888887776542 0 22
Q ss_pred ccccccccccccccccCcCCc-cccccccchhhhccccccc-----ccCCCccCCCCCCCeEEccCccccccCCcccccc
Q 040845 314 SLKDILDLNLSSNCFSGPLPL-EIRNLKALIEIDFSMNNFS-----GIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDL 387 (824)
Q Consensus 314 ~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 387 (824)
.+++|+.|+|++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|+|++..|..|.++
T Consensus 424 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 503 (844)
T 3j0a_A 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503 (844)
T ss_dssp TCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC
T ss_pred cCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch
Confidence 567777888888887754332 3556788888888888886 3445668889999999999999998888889999
Q ss_pred ccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCCCccccccccccCCccccCCCC
Q 040845 388 ISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSPN 453 (824)
Q Consensus 388 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~ 453 (824)
++|+.|+|++|+|++..|..+. ++|+.|+|++|++++.+|. .+.++..+.+.+||+.|+|+.
T Consensus 504 ~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 504 TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSSC
T ss_pred hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCccccccc
Confidence 9999999999999976666665 7999999999999998886 466888899999999998863
No 9
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.3e-51 Score=434.77 Aligned_cols=250 Identities=25% Similarity=0.328 Sum_probs=211.7
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
..|++.+.||+|+||+||+|+++ +|+.||||++........+.+.+|+++|+.++|||||++++++.+++..|+||||+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 46889999999999999999875 59999999998776666778899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMT 685 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~ 685 (824)
++|+|.+++... .+++.++..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.+..... .
T Consensus 154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~ 226 (346)
T 4fih_A 154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R 226 (346)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--C
T ss_pred CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--c
Confidence 999999999764 5899999999999999999999 99999999999999999999999999999987643322 2
Q ss_pred cccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhh
Q 040845 686 QTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDI 765 (824)
Q Consensus 686 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (824)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... ......+....+.
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~---------------- 288 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPP---------------- 288 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSSCC----------------
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC----------------
Confidence 3456799999999999999999999999999999999999999976321 1111111111110
Q ss_pred hhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 766 HFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 766 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+..+++++.+|+.+||+.||++|||++|+++|
T Consensus 289 ~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~H 324 (346)
T 4fih_A 289 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 324 (346)
T ss_dssp CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 011123456779999999999999999999999876
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=4.3e-51 Score=429.63 Aligned_cols=257 Identities=23% Similarity=0.289 Sum_probs=210.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.+.|+..++||+|+||+||+|+++ +|+.||||+++.... ..+|+.+++.++|||||++++++.+++..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 356788889999999999999875 589999999975422 24699999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCCCCc
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM-VAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg~a~~~~~~~~~ 683 (824)
+++|+|.+++...+ .+++.++..++.||+.||+||| +++||||||||+|||++.+| .+||+|||+|+.+......
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence 99999999998765 7999999999999999999999 99999999999999999987 6999999999877543221
Q ss_pred ---cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 684 ---MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 684 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+. .........
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~-~~~i~~~~~------------- 273 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL-CLKIASEPP------------- 273 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC-HHHHHHSCC-------------
T ss_pred cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHHcCCC-------------
Confidence 122335799999999999999999999999999999999999999976443322 111111100
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
.....+..+++.+.+++.+||+.||++|||+.|+++++....+..
T Consensus 274 ----~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 274 ----PIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp ----GGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred ----CchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 000122356778999999999999999999999999998887643
No 11
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.5e-51 Score=429.48 Aligned_cols=278 Identities=23% Similarity=0.326 Sum_probs=204.9
Q ss_pred ccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCC----eeEEEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE----FKALVL 602 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 602 (824)
.+|.+.+.||+|+||+||+|+++ |+.||||+++.... ....++.|+..+.+++|||||++++++.+++ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 45778899999999999999985 89999999865422 1222345666677899999999999997653 579999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY-----SAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
||+++|+|.++++.. .+++.++.+++.|+++||+|||+.+ ..+|+||||||+|||++.++.+||+|||+|+..
T Consensus 81 Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 999999999999865 5899999999999999999999321 239999999999999999999999999999876
Q ss_pred CCCCCcc--ccccccccccccCccCcCCC------CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCC
Q 040845 678 TGEDQSM--TQTQTLATIGYMAPEYGREG------QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPI 749 (824)
Q Consensus 678 ~~~~~~~--~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 749 (824)
....... ......||++|||||++.+. .++.++|||||||++|||+||++||......+.....+.......
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~ 238 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSV 238 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCH
T ss_pred cCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchH
Confidence 5443321 22345799999999998654 467899999999999999999988765433322222111100000
Q ss_pred c-chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 750 S-TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 750 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
. ....+.................++..+.+||.+||+.||++||||.||++.|+++.++
T Consensus 239 ~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 239 EEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 0 0000100011111111122335677899999999999999999999999999998754
No 12
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=9.2e-52 Score=429.21 Aligned_cols=251 Identities=25% Similarity=0.370 Sum_probs=212.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc---ccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ---CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||+||+|+.+ +|+.||||++... .....+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 367999999999999999999865 5899999999754 234456789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++|+|.+++.+.+ .+++.++..++.||+.||+||| +++|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 111 mEy~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~ 186 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPES 186 (311)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTT
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCC
Confidence 99999999999998765 7999999999999999999999 9999999999999999999999999999999876544
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
........+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.... ..........+
T Consensus 187 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-~~~~~i~~~~~-------------- 251 (311)
T 4aw0_A 187 KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG-LIFAKIIKLEY-------------- 251 (311)
T ss_dssp TCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTCC--------------
T ss_pred CcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHcCCC--------------
Confidence 444445568999999999999999999999999999999999999999763211 11111111110
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..+++++.+|+.+||+.||++|||++|+..+
T Consensus 252 ------~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 252 ------DFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp ------CCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred ------CCCcccCHHHHHHHHHHccCCHhHCcChHHHcCC
Confidence 0112345678999999999999999999997544
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-49 Score=464.15 Aligned_cols=419 Identities=22% Similarity=0.209 Sum_probs=371.9
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|.+|+++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+.++++|++|++++|++
T Consensus 62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred EECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 67899999999999999999999999999999988899999999999999999999977788899999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCc--eEeccCcccccc--------------------------
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLS--KLALEMNSFSGF-------------------------- 133 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~--~L~L~~N~i~~~-------------------------- 133 (824)
++++..... ++++|++|+|++|++++..+..+..+++|+ +|++++|.+++.
T Consensus 142 ~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 220 (606)
T 3t6q_A 142 SSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220 (606)
T ss_dssp CCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHH
T ss_pred cccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhh
Confidence 986433332 488999999999999877777777777777 666666665543
Q ss_pred -------------------------------------------------CCccccCCCCCCEEEccCCcCCCCcCccccc
Q 040845 134 -------------------------------------------------IPSTFGNLRNLEWLTLYDNNLTSSTLDLSFL 164 (824)
Q Consensus 134 -------------------------------------------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 164 (824)
.+..|.++++|++|++++|.++.++
T Consensus 221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp------ 294 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP------ 294 (606)
T ss_dssp HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC------
T ss_pred hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC------
Confidence 3444777889999999999998765
Q ss_pred ccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCc-cCCCCCCCCEEEecCCccCCcc--chhh
Q 040845 165 SSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPE-EITNLTDLTTIVLGGNKLNGSI--PITL 241 (824)
Q Consensus 165 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~~ 241 (824)
..+..+++|++|++++|.+.++.+..+.. .++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGG--CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhc--cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 45788999999999999999887766544 46899999999999876665 4999999999999999999766 7789
Q ss_pred cCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCc-cccCCCCCcEEEcCCCCCCCCC-Cccccccccc
Q 040845 242 GKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPA-CFSNMTFLKVLSLGSNELTSIP-LNFWSLKDIL 319 (824)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~lp-~~~~~l~~L~ 319 (824)
..+++|++|++++|++.+..|..+..+++|+.|++++|++.+..+. .+.++++|++|++++|.++.++ ..+..+++|+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 9999999999999999999999999999999999999999977654 4899999999999999999774 4578899999
Q ss_pred ccccccccccCc---CCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEcc
Q 040845 320 DLNLSSNCFSGP---LPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLS 396 (824)
Q Consensus 320 ~L~l~~N~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 396 (824)
.|++++|++.+. .+..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..|..+++| .|+++
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 999999999862 34678999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 397 YNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 397 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
+|++++..|..+..+++|+.|++++|+|+|.++.
T Consensus 532 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp SSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999988899999999999999999999998874
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.9e-50 Score=468.41 Aligned_cols=440 Identities=20% Similarity=0.170 Sum_probs=364.9
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|..|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|.+|.++++|++|+|++|++
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 67899999999999999999999999999999988888999999999999999999988899999999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeee-ecCccccCCCCCceEeccCccccccCCccccCCCCCC----EEEccCCcCCC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSG-TIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLE----WLTLYDNNLTS 156 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~----~L~L~~n~i~~ 156 (824)
++.+... ...+++|++|+|++|.+++ .+|..+.++++|++|+|++|++++..+..|+.+++|+ +|++++|.++.
T Consensus 117 ~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~ 195 (606)
T 3vq2_A 117 ASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195 (606)
T ss_dssp CCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE
T ss_pred ccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce
Confidence 8877443 3469999999999999986 4689999999999999999999988888787766554 68888887775
Q ss_pred CcCccc--------------------------------------------------------------------------
Q 040845 157 STLDLS-------------------------------------------------------------------------- 162 (824)
Q Consensus 157 ~~~~~~-------------------------------------------------------------------------- 162 (824)
++....
T Consensus 196 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 275 (606)
T 3vq2_A 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275 (606)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCC
T ss_pred eCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccccc
Confidence 543210
Q ss_pred -ccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhh
Q 040845 163 -FLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITL 241 (824)
Q Consensus 163 -~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 241 (824)
....+..+++|++|++++|.+..++ .+ .. ..+|++|++++|.+ +.+| .+ .+++|+.|++++|...+ +..+
T Consensus 276 ~~~~~~~~l~~L~~L~l~~~~~~~l~--~l-~~-~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~--~~~~ 346 (606)
T 3vq2_A 276 DDIVKFHCLANVSAMSLAGVSIKYLE--DV-PK-HFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI--SFKK 346 (606)
T ss_dssp GGGGSCGGGTTCSEEEEESCCCCCCC--CC-CT-TCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCE--ECCC
T ss_pred ccccccccCCCCCEEEecCccchhhh--hc-cc-cccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCcc--chhh
Confidence 0001233444555555555544432 11 11 24677777777777 4566 44 77788888888875443 3367
Q ss_pred cCCCCCCEEEcccccCccc--CCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC--ccccccc
Q 040845 242 GKLQKLQDVDLEYNQLEGS--IPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL--NFWSLKD 317 (824)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~ 317 (824)
..+++|++|++++|++++. .+..+..+++|++|++++|.+.+ .|..+..+++|+.|++++|+++.++. .+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 7889999999999999865 37888999999999999999985 55889999999999999999998764 5788999
Q ss_pred ccccccccccccCcCCccccccccchhhhcccccccc-cCCCccCCCCCCCeEEccCccccccCCccccccccccEEEcc
Q 040845 318 ILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSG-IIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLS 396 (824)
Q Consensus 318 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 396 (824)
|+.|++++|.+.+..|..+.++++|+.|++++|++++ .+|..|+.+++|+.|+|++|++++..|..|..+++|+.|+|+
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 9999999999998899999999999999999999997 478899999999999999999998889999999999999999
Q ss_pred CcccCCCCcccccCCcccceeeccCCcccCCCCCCCCcc-ccccccccCCccccCCC
Q 040845 397 YNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFG-NFSAESFKGNELLCGSP 452 (824)
Q Consensus 397 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~-~~~~~~~~~n~~~c~~~ 452 (824)
+|++++..|..+..+++|+.|++++|+++..++....+. ++..+.+.+||+.|+|+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999998889999999999999999999996555444454 47888999999999987
No 15
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=2e-51 Score=438.17 Aligned_cols=269 Identities=24% Similarity=0.376 Sum_probs=221.1
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEECC------CcEEEEEEeecccc-chhhhHHHHHHHHhcCCC-CcceeEEee
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIRD------GMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRH-RNLVKVISS 591 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~l~~~ 591 (824)
.+++...++|++.+.||+|+||+||+|++.. ++.||||+++.... ...+.+.+|+++|++++| ||||+++|+
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~ 136 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA 136 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEE
Confidence 4444556889999999999999999998642 36899999975533 345678999999999975 899999999
Q ss_pred eecC-CeeEEEEeccCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCC
Q 040845 592 CSNE-EFKALVLEYMPHGSLEKYLHSSN---------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKP 655 (824)
Q Consensus 592 ~~~~-~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~ 655 (824)
|.++ ...++|||||++|+|.++++... ..+++.++..++.|||+||+||| +++||||||||
T Consensus 137 ~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRDLK~ 213 (353)
T 4ase_A 137 CTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAA 213 (353)
T ss_dssp ECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSG
T ss_pred EEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCccCc
Confidence 9764 56899999999999999997532 35899999999999999999999 99999999999
Q ss_pred CCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCccccc
Q 040845 656 SNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFN 734 (824)
Q Consensus 656 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~ 734 (824)
+|||+++++.+||+|||+|+.+.............||+.|||||++.+..|+.++|||||||++|||+| |+.||.+...
T Consensus 214 ~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~ 293 (353)
T 4ase_A 214 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI 293 (353)
T ss_dssp GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC
T ss_pred cceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999997765554444556679999999999999999999999999999999998 8999976432
Q ss_pred CcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 735 GEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
.+. +...+... .+...|..+++++.++|.+||+.||++||||+|++++|+++.++-.
T Consensus 294 ~~~-~~~~i~~g------------------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 294 DEE-FCRRLKEG------------------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp SHH-HHHHHHHT------------------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHHcC------------------CCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence 221 11111111 1112234567789999999999999999999999999999877543
No 16
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=3.3e-51 Score=432.36 Aligned_cols=251 Identities=22% Similarity=0.342 Sum_probs=204.0
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||+||+|++. +|+.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 478999999999999999999865 59999999997543 234567899999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 603 EYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
||+++|+|.+++...+ ..+++.+++.++.||+.||+||| +++|+||||||+|||++++|.+||+|||+|+.+...
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~- 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST- 178 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-
T ss_pred eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCC-
Confidence 9999999999997544 45789999999999999999999 999999999999999999999999999999865321
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+ .+........+
T Consensus 179 -~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~~~~------------- 243 (350)
T 4b9d_A 179 -VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKN-LVLKIISGSFP------------- 243 (350)
T ss_dssp -HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHTCCC-------------
T ss_pred -cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HHHHHHcCCCC-------------
Confidence 112334579999999999999999999999999999999999999997632111 11111111111
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++.++.+|+.+||+.||++|||++|++++
T Consensus 244 ------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 277 (350)
T 4b9d_A 244 ------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEK 277 (350)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0112356678999999999999999999999875
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-49 Score=470.02 Aligned_cols=445 Identities=23% Similarity=0.249 Sum_probs=287.7
Q ss_pred cccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccc
Q 040845 3 SIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLS 82 (824)
Q Consensus 3 ~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 82 (824)
+|++|.|+++.|..|+++++|++|+|++|++++..+..|+++++|++|+|++|++++..|.+|.++++|++|+|++|+++
T Consensus 55 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 55 DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp ECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 44455555555555555555555555555555333334555555555555555555444444555555555555555544
Q ss_pred cccCccccCCCCC--------------------------ccEEEccCCeeeeecCccccCC-------------------
Q 040845 83 GCLSSITDVGLPN--------------------------LEVLYLWGNNFSGTIPHFIFNA------------------- 117 (824)
Q Consensus 83 ~~~~~~~~~~l~~--------------------------L~~L~L~~n~i~~~~~~~l~~l------------------- 117 (824)
+.+.... ..+++ |++|++++|++++..|..+..+
T Consensus 135 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 135 STKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp CCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred ccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence 4332211 12344 4444444444433333322211
Q ss_pred --------CCCceEeccCccccccCCccccCCCC--CCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccC
Q 040845 118 --------SKLSKLALEMNSFSGFIPSTFGNLRN--LEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGIL 187 (824)
Q Consensus 118 --------~~L~~L~L~~N~i~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 187 (824)
++|+.|++++|.+++..|..|.+++. |++|++++|.++.++. ..+..+++|++|++++|.+.++.
T Consensus 214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-----DSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSCCBSEEC
T ss_pred HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc-----ccccCcccccEeeCCCCccCccC
Confidence 12223333333333333333333322 5555555555444322 23455555555555555555443
Q ss_pred Cccccc-------------------------------cccccccEEEeecCcceecCCccCCCCCCCCEEEecC------
Q 040845 188 PRTYVG-------------------------------NLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGG------ 230 (824)
Q Consensus 188 ~~~~~~-------------------------------~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~------ 230 (824)
+..|.+ .-.++|++|++++|++.+..+..|.++++|++|++++
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 368 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence 332211 0124677777777777766666666666666555544
Q ss_pred ----------------------CccCCccchhhcCCCCCCEEEcccccCcccCC-ccccccCCccEEEccCccccccCCc
Q 040845 231 ----------------------NKLNGSIPITLGKLQKLQDVDLEYNQLEGSIP-DSICLSVELYELELGGNKLSGSIPA 287 (824)
Q Consensus 231 ----------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~ 287 (824)
|++++..|.+|..+++|++|+|++|++.+.+| ..+..+++|++|++++|++.+..+.
T Consensus 369 ~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT
T ss_pred hcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh
Confidence 44555556677777888888888888775544 5677778888888888888777777
Q ss_pred cccCCCCCcEEEcCCCCCC---CCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCC-------
Q 040845 288 CFSNMTFLKVLSLGSNELT---SIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIP------- 357 (824)
Q Consensus 288 ~~~~l~~L~~L~L~~N~l~---~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------- 357 (824)
.|..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|+.|++++|++++..+
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 8888888888888888775 457778889999999999999998888889999999999999999986532
Q ss_pred -CccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCC--Cc
Q 040845 358 -MEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGG--SF 434 (824)
Q Consensus 358 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~ 434 (824)
..|.++++|+.|+|++|+++...+..|.++++|+.|+|++|++++..+..+..+++|+.|++++|++++.+|... .+
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence 237889999999999999996555679999999999999999997667778899999999999999998777532 46
Q ss_pred cccccccccCCccccCCCC
Q 040845 435 GNFSAESFKGNELLCGSPN 453 (824)
Q Consensus 435 ~~~~~~~~~~n~~~c~~~~ 453 (824)
.++..+.+.+||+.|+|+.
T Consensus 609 ~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 609 RNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCSEEECTTCCCCBCCCC
T ss_pred cccCEEEccCCCcccCCcc
Confidence 7788899999999999873
No 18
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=3.4e-50 Score=415.88 Aligned_cols=245 Identities=25% Similarity=0.377 Sum_probs=197.7
Q ss_pred CCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeec----CCeeEEEE
Q 040845 530 SENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSN----EEFKALVL 602 (824)
Q Consensus 530 ~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 602 (824)
++.+.||+|+||+||+|.+. ++..||||++.... ....+.+.+|++++++++|||||++++++.+ +...|+||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 56678999999999999875 58999999987542 2345678999999999999999999999864 35689999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeecccccccCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAP--VIHCDLKPSNVLLD-DNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~-~~~~~kl~Dfg~a~~~~~ 679 (824)
||+++|+|.+++.+.. .+++..+..++.||+.||+||| +++ |+||||||+|||++ .++.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999998765 7899999999999999999999 777 99999999999998 479999999999985432
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
. .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+...... +...+.....
T Consensus 185 ~----~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~-~~~~i~~~~~----------- 247 (290)
T 3fpq_A 185 S----FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQ-IYRRVTSGVK----------- 247 (290)
T ss_dssp T----SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHH-HHHHHTTTCC-----------
T ss_pred C----ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHH-HHHHHHcCCC-----------
Confidence 1 2234679999999998865 699999999999999999999999965322111 1111111000
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+..+++++.+|+.+||+.||++|||++|+++|
T Consensus 248 ------~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~H 283 (290)
T 3fpq_A 248 ------PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp ------CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ------CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 001122345678999999999999999999999875
No 19
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.2e-50 Score=435.90 Aligned_cols=250 Identities=25% Similarity=0.328 Sum_probs=211.6
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
+.|++.+.||+|+||+||+|+++ +|+.||||++........+.+.+|+.+|+.++|||||++++++.+++..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 56999999999999999999875 59999999998766666778999999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMT 685 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~ 685 (824)
+||+|.+++... .+++.++..++.||+.||+||| +++||||||||+|||++.+|.+||+|||+|+.+..... .
T Consensus 231 ~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~ 303 (423)
T 4fie_A 231 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R 303 (423)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--C
T ss_pred CCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--c
Confidence 999999999765 5899999999999999999999 99999999999999999999999999999987643322 2
Q ss_pred cccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhh
Q 040845 686 QTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDI 765 (824)
Q Consensus 686 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (824)
....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+... ......+....+.
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~~i~~~~~~---------------- 365 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMKMIRDNLPP---------------- 365 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCC----------------
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHHHHHcCCCC----------------
Confidence 3456799999999999999999999999999999999999999975321 1111111111110
Q ss_pred hhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 766 HFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 766 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+..++.++.+|+.+||..||++|||++|+++|
T Consensus 366 ~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~H 401 (423)
T 4fie_A 366 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKH 401 (423)
T ss_dssp CCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 001112346678999999999999999999999876
No 20
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=4e-50 Score=411.51 Aligned_cols=247 Identities=23% Similarity=0.382 Sum_probs=192.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||+||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..|+|
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence 368999999999999999999864 59999999986542 23356789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+ +|+|.+++...+ .+++.++..++.||+.||+||| +++|+||||||+|||+++++.+||+|||+|+......
T Consensus 92 mEy~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~ 166 (275)
T 3hyh_A 92 IEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp EECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC-------
T ss_pred EeCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC
Confidence 9999 679999998765 7999999999999999999999 9999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
......||+.|||||++.+..+ +.++||||+||++|||+||+.||.+.... ...........
T Consensus 167 ---~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~-~~~~~i~~~~~------------- 229 (275)
T 3hyh_A 167 ---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP-VLFKNISNGVY------------- 229 (275)
T ss_dssp -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHTCC-------------
T ss_pred ---ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHcCCC-------------
Confidence 2234579999999999988776 68999999999999999999999752111 01111111100
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..+++++.+++.+||+.||++|||++|+++|
T Consensus 230 -------~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~h 263 (275)
T 3hyh_A 230 -------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp -------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHC
T ss_pred -------CCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcC
Confidence 0112345678999999999999999999999885
No 21
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2e-50 Score=419.56 Aligned_cols=248 Identities=25% Similarity=0.314 Sum_probs=198.7
Q ss_pred ccCCCCceeeeccceEEEEEEEC----CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR----DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
++|++.+.||+|+||+||+|+.. +++.||||+++... ......+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999763 47899999986542 2334568889999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||++||+|.+++.+.+ .+++.++..++.||+.||+||| +++|+||||||+|||++.+|.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999998765 7999999999999999999999 999999999999999999999999999999865432
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
. .......||+.|||||++.+..|+.++||||+||++|||+||+.||.+....+ ..........
T Consensus 180 ~--~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~-~~~~i~~~~~------------- 243 (304)
T 3ubd_A 180 E--KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKE-TMTMILKAKL------------- 243 (304)
T ss_dssp ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC-------------
T ss_pred C--ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHH-HHHHHHcCCC-------------
Confidence 2 22334679999999999999999999999999999999999999997632111 1111111100
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCH-----HHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINA-----KEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~-----~evl~~ 801 (824)
..+..+++++.+|+.+||+.||++|||+ +|+++|
T Consensus 244 -------~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H 282 (304)
T 3ubd_A 244 -------GMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH 282 (304)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred -------CCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence 1122356778999999999999999985 566653
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-48 Score=449.20 Aligned_cols=435 Identities=21% Similarity=0.196 Sum_probs=358.6
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.+.+|.++++|++|+|++|++++..+..|+++++|++|+|++|++++..|.+|.++++|++|++++|++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 57888999999888999999999999999999887788899999999999999999877778899999999999999998
Q ss_pred ccccCccccCCCCCccEEEccCCeeee-ecCccccCCCCCceEeccCccccccCCccccCCCCC----CEEEccCCcCCC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSG-TIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNL----EWLTLYDNNLTS 156 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L----~~L~L~~n~i~~ 156 (824)
++++... ..++++|++|+|++|.+++ .+|..+.++++|++|++++|++++..+..|+.+++| +.|++++|.++.
T Consensus 113 ~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 113 ASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 8776532 3468899999999999886 368889999999999999999988888888888888 889999998887
Q ss_pred CcCcccccccCCCCCCCcEEECcCCCCC----------------------------------------------------
Q 040845 157 STLDLSFLSSLSNCKSLTHISLSNNPLD---------------------------------------------------- 184 (824)
Q Consensus 157 ~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---------------------------------------------------- 184 (824)
++.. .+..+ +|++|++++|...
T Consensus 192 ~~~~-----~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 192 IQPG-----AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp ECTT-----TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred cCHH-----HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 6542 24433 6888888776321
Q ss_pred ------ccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCc
Q 040845 185 ------GILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 185 ------~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
+..+..+.. .++|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|.+.
T Consensus 266 ~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 266 YLDYYLDDIIDLFNC--LTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp ETTEEESCSTTTTGG--GTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSC
T ss_pred cchhhhhhchhhhcC--cCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccc
Confidence 111111111 346777788777776 466677777 7888888888777 3443 46777888888888877
Q ss_pred ccCCccccccCCccEEEccCccccccC--CccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCC-cc
Q 040845 259 GSIPDSICLSVELYELELGGNKLSGSI--PACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLP-LE 335 (824)
Q Consensus 259 ~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~-~~ 335 (824)
+..+. ..+++|+.|++++|++++.. +..+.++++|++|++++|.++.+|..+..+++|+.|++++|.+.+..+ ..
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 55444 67889999999999998654 677889999999999999999998888889999999999999987665 57
Q ss_pred ccccccchhhhcccccccccCCCccCCCCCCCeEEccCcccc-ccCCccccccccccEEEccCcccCCCCcccccCCccc
Q 040845 336 IRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLE-GSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYL 414 (824)
Q Consensus 336 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 414 (824)
+.++++|+.|++++|.+.+..|..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 889999999999999999889999999999999999999997 5688999999999999999999998889999999999
Q ss_pred ceeeccCCcccCCCCCC-CCccccccccccCCccccCCC
Q 040845 415 KDLNLSFNKLKGEIPRG-GSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 415 ~~L~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 452 (824)
+.|++++|++++.+|.. ..+.++..+.+.+|++.|+|+
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999999999887753 557788888999999999887
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-47 Score=443.66 Aligned_cols=413 Identities=19% Similarity=0.137 Sum_probs=356.9
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|.+|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+.++++|++|++++|++
T Consensus 61 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred EeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence 67899999999999999999999999999999988899999999999999999999977778899999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCc----eEeccCccccccCCcccc------------------
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLS----KLALEMNSFSGFIPSTFG------------------ 139 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~L~L~~N~i~~~~~~~~~------------------ 139 (824)
++.........+++|++|+|++|++++..+..+..+++|+ +|++++|.++++.+..+.
T Consensus 141 ~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~ 220 (606)
T 3vq2_A 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220 (606)
T ss_dssp CCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHH
T ss_pred cceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhH
Confidence 8633222234699999999999999988888777666554 677777777655544443
Q ss_pred --------------------------------------------------------------CCCCCCEEEccCCcCCCC
Q 040845 140 --------------------------------------------------------------NLRNLEWLTLYDNNLTSS 157 (824)
Q Consensus 140 --------------------------------------------------------------~l~~L~~L~L~~n~i~~~ 157 (824)
.+++|++|++++|.+..+
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 300 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC
T ss_pred HHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhh
Confidence 334555555555555443
Q ss_pred cCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCcc
Q 040845 158 TLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSI 237 (824)
Q Consensus 158 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 237 (824)
+ .+..+++|++|++++|.+..++ .+ -.++|++|++++|...+.. .+..+++|+.|++++|.+++..
T Consensus 301 ~-------~l~~~~~L~~L~l~~n~l~~lp--~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 301 E-------DVPKHFKWQSLSIIRCQLKQFP--TL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp C-------CCCTTCCCSEEEEESCCCSSCC--CC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred h-------hccccccCCEEEcccccCcccc--cC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence 3 4788899999999999996554 23 2568999999999766544 6779999999999999998663
Q ss_pred --chhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCC-ccccCCCCCcEEEcCCCCCCCC-CCccc
Q 040845 238 --PITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIP-ACFSNMTFLKVLSLGSNELTSI-PLNFW 313 (824)
Q Consensus 238 --~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-p~~~~ 313 (824)
+..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..+ ..+.++++|++|++++|.++.. |..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 7889999999999999999985 66889999999999999999998877 7899999999999999999975 56688
Q ss_pred ccccccccccccccccC-cCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccE
Q 040845 314 SLKDILDLNLSSNCFSG-PLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKS 392 (824)
Q Consensus 314 ~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 392 (824)
.+++|+.|++++|.+++ ..|..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 99999999999999997 47999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEccCcccCCCCcccccCCc-ccceeeccCCcccCCCCC
Q 040845 393 LNLSYNNLSGTIPVSLEKLS-YLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 393 L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~ 430 (824)
|+|++|+|+ .+|..+..++ +|+.|++++|+|.|.++.
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999 8888899997 599999999999998875
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.3e-48 Score=451.42 Aligned_cols=385 Identities=19% Similarity=0.262 Sum_probs=308.5
Q ss_pred CCcCCcccChhhhCcCCCceeeccCCcccc------------------ccCccccCCCCCccEEEccCCeeeeecCcccc
Q 040845 54 QNKLLGTIPAAIFNVSTLKAFAVTNNSLSG------------------CLSSITDVGLPNLEVLYLWGNNFSGTIPHFIF 115 (824)
Q Consensus 54 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~ 115 (824)
+|++++ +|.+++++++|++|+|++|++++ +|..+.+..+++|++|+|++|++.+.+|..++
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 456666 88889999999999999999988 77766533588999999999998888899999
Q ss_pred CCCCCceEeccCcc-ccc-cCCccccCC------CCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccC
Q 040845 116 NASKLSKLALEMNS-FSG-FIPSTFGNL------RNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGIL 187 (824)
Q Consensus 116 ~l~~L~~L~L~~N~-i~~-~~~~~~~~l------~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 187 (824)
++++|++|+|++|+ +++ .+|..++++ ++|++|++++|+++.++.. ..+.++++|++|++++|.+.+..
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~----~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE----TSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH----HHHTTCTTCCEEECCSCCCEEEC
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch----hhhccCCCCCEEeCcCCcCccch
Confidence 99999999999998 887 778888776 8999999999998865420 14788899999999999998655
Q ss_pred CccccccccccccEEEeecCcceecCCccCCCCCC-CCEEEecCCccCCccchhhcCCC--CCCEEEcccccCcccCCcc
Q 040845 188 PRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTD-LTTIVLGGNKLNGSIPITLGKLQ--KLQDVDLEYNQLEGSIPDS 264 (824)
Q Consensus 188 ~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~ 264 (824)
| .+.. .++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++++|++++..|..
T Consensus 347 p-~~~~--l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 347 P-AFGS--EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp C-CCEE--EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred h-hhCC--CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 5 4422 457999999999988 77888888988 999999999998 6777777655 8999999999998888888
Q ss_pred cc-------ccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccc--------ccccccccccccc
Q 040845 265 IC-------LSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLK--------DILDLNLSSNCFS 329 (824)
Q Consensus 265 ~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~--------~L~~L~l~~N~l~ 329 (824)
+. .+++|+.|++++|+++...+..+..+++|+.|+|++|+++.+|....... +|+.|+|++|+++
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 87 77889999999999986666667778999999999999998887755432 8999999999998
Q ss_pred CcCCcccc--ccccchhhhcccccccccCCCccCCCCCCCeEEc------cCccccccCCccccccccccEEEccCcccC
Q 040845 330 GPLPLEIR--NLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFL------EYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 330 ~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
.+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|+|++|++
T Consensus 502 -~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 502 -KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp -BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred -ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence 6777776 88999999999999987 7888888999999999 55777888888899999999999999999
Q ss_pred CCCcccccCCcccceeeccCCcccCCCCCCCC---ccccccccccCCccccCCCC
Q 040845 402 GTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGS---FGNFSAESFKGNELLCGSPN 453 (824)
Q Consensus 402 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~---~~~~~~~~~~~n~~~c~~~~ 453 (824)
+.+|..+. ++|+.|++++|++.+..+.... ......+.+..+...|+|+.
T Consensus 579 ~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 579 RKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp CBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence 48888766 7899999999988754432110 12222334455556667664
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.9e-47 Score=446.48 Aligned_cols=442 Identities=21% Similarity=0.192 Sum_probs=308.0
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|.|+++.+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+.+|.++++|++|+|++|++
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCcc
Confidence 45666666666666666666666666666666666666666666666666666666644444566666666666666666
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCcccc--CCCCCCEEEccCCcCCCCcC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFG--NLRNLEWLTLYDNNLTSSTL 159 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~ 159 (824)
++++.... .++++|++|+|++|.+++..+..+..+++|++|+|++|.+++..+..+. .+++|++|++++|.++..+.
T Consensus 110 ~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 110 QKIKNNPF-VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCSCTT-TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred CccChhHc-cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 65553322 2466666677766666666666666666666666666666655555443 34666666766666665443
Q ss_pred cccccccCC------------------------CCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCc
Q 040845 160 DLSFLSSLS------------------------NCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPE 215 (824)
Q Consensus 160 ~~~~~~~l~------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~ 215 (824)
.. +..+. ..++|++|++++|.+.+..+..|...-..+|++|++++|++++..+.
T Consensus 189 ~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 266 (680)
T 1ziw_A 189 GC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266 (680)
T ss_dssp TG--GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT
T ss_pred hh--hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc
Confidence 21 01111 12556667777777766666655442224578888888887777777
Q ss_pred cCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcc-----cCC----ccccccCCccEEEccCccccccCC
Q 040845 216 EITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEG-----SIP----DSICLSVELYELELGGNKLSGSIP 286 (824)
Q Consensus 216 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~l~~n~l~~~~~ 286 (824)
.|..+++|++|++++|.+.+..|..|.++++|++|++++|...+ .+| ..|..+++|++|++++|++.+..+
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (680)
T 1ziw_A 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346 (680)
T ss_dssp TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence 77778888888888888777777777777888888877765442 122 256677888888888888888778
Q ss_pred ccccCCCCCcEEEcCCCCC--CCCCCc-ccc--cccccccccccccccCcCCccccccccchhhhcccccccccCC-Ccc
Q 040845 287 ACFSNMTFLKVLSLGSNEL--TSIPLN-FWS--LKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIP-MEI 360 (824)
Q Consensus 287 ~~~~~l~~L~~L~L~~N~l--~~lp~~-~~~--l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~ 360 (824)
..|.++++|++|++++|.+ ..++.. |.. .++|+.|++++|++++..|..|..+++|+.|++++|++++.+| ..|
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 426 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGG
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccc
Confidence 8888888888888888864 344433 222 2578888888888888788888888888888888888876554 678
Q ss_pred CCCCCCCeEEccCccccccCCccccccccccEEEccCcccC--CCCcccccCCcccceeeccCCcccCCCCC-CCCcccc
Q 040845 361 GSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS--GTIPVSLEKLSYLKDLNLSFNKLKGEIPR-GGSFGNF 437 (824)
Q Consensus 361 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~ 437 (824)
.++++|+.|++++|++++..+..|..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++.+|. ...+.++
T Consensus 427 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc
Confidence 88888888888888888777788888888888888888876 46788888888888888888888876665 3445667
Q ss_pred ccccccCCc
Q 040845 438 SAESFKGNE 446 (824)
Q Consensus 438 ~~~~~~~n~ 446 (824)
..+.+.+|.
T Consensus 507 ~~L~Ls~N~ 515 (680)
T 1ziw_A 507 EILDLQHNN 515 (680)
T ss_dssp CEEECCSSC
T ss_pred CEEeCCCCC
Confidence 777777775
No 26
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=5.1e-48 Score=403.84 Aligned_cols=250 Identities=24% Similarity=0.372 Sum_probs=189.7
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCC--------
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEE-------- 596 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------- 596 (824)
++|++.+.||+|+||+||+|+++ +|+.||||+++.... ...+.+.+|+++|++++|||||++++++.+.+
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 46899999999999999999875 589999999976543 34567889999999999999999999986543
Q ss_pred ----eeEEEEeccCCCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 040845 597 ----FKALVLEYMPHGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSD 670 (824)
Q Consensus 597 ----~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 670 (824)
..|+||||+++|+|.+++.... ...++..++.++.||++||+||| +++|+||||||+|||++.++.+||+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~D 161 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGD 161 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEcc
Confidence 3689999999999999998654 23456778899999999999999 99999999999999999999999999
Q ss_pred cccccccCCCCCc----------cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhh
Q 040845 671 FGIAKLLTGEDQS----------MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLK 740 (824)
Q Consensus 671 fg~a~~~~~~~~~----------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~ 740 (824)
||+|+.+...... ...+..+||+.|||||++.+..|+.++||||+||++|||++ ||....+....+.
T Consensus 162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~ 238 (299)
T 4g31_A 162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLT 238 (299)
T ss_dssp CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHH
T ss_pred CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHH
Confidence 9999876543221 12234579999999999999999999999999999999996 7654211100001
Q ss_pred hhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 741 HWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..... .. ........+.+.+++.+||+.||++|||+.|++++
T Consensus 239 ~~~~~---------------~~----p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 280 (299)
T 4g31_A 239 DVRNL---------------KF----PPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIEN 280 (299)
T ss_dssp HHHTT---------------CC----CHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHhcC---------------CC----CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 00000 00 01122344567889999999999999999999874
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-47 Score=439.74 Aligned_cols=435 Identities=21% Similarity=0.206 Sum_probs=338.0
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|..|.++++|++|+|++|++++..|..|+++++|++|||++|++++..|.+|.++++|++|+|++|++
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 67889999999999999999999999999999988888899999999999999999977777799999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCe-eeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCc
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNN-FSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLD 160 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 160 (824)
++.........+++|++|++++|. +....+..+..+++|++|++++|++++..|..++++++|++|+++.|.+..++..
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 190 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh
Confidence 865332233468999999999998 5544456889999999999999999988899999999999999998888765432
Q ss_pred ccccccCCCCCCCcEEECcCCCCCccCCcc-ccccccccccEEEeecCcceecCC----ccCCCCCCCCEEEecCCccCC
Q 040845 161 LSFLSSLSNCKSLTHISLSNNPLDGILPRT-YVGNLSHSLKNFYMYNCNVSGGIP----EEITNLTDLTTIVLGGNKLNG 235 (824)
Q Consensus 161 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~ 235 (824)
.+..+++|++|++++|++.+..... .......+|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+
T Consensus 191 -----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 191 -----FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp -----HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred -----hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 1346788999999999988752110 111223456666666666654322 122334444444444444332
Q ss_pred c-----------------------------------cchhhcCCCCCCEEEcccccCcccCCccc-cccCCccEEEccCc
Q 040845 236 S-----------------------------------IPITLGKLQKLQDVDLEYNQLEGSIPDSI-CLSVELYELELGGN 279 (824)
Q Consensus 236 ~-----------------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n 279 (824)
. .+..+...++|+.|++++|++. .+|..+ ..+++|+.|++++|
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCC
Confidence 1 1122334567889999999987 556555 57899999999999
Q ss_pred cccccCC---ccccCCCCCcEEEcCCCCCCCCCC---cccccccccccccccccccCcCCccccccccchhhhccccccc
Q 040845 280 KLSGSIP---ACFSNMTFLKVLSLGSNELTSIPL---NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFS 353 (824)
Q Consensus 280 ~l~~~~~---~~~~~l~~L~~L~L~~N~l~~lp~---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 353 (824)
++.+..| ..++.+++|++|++++|+++.++. .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 9987653 457888999999999999998863 3778999999999999998 67888889999999999999998
Q ss_pred ccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC-CC
Q 040845 354 GIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR-GG 432 (824)
Q Consensus 354 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~ 432 (824)
+ +|..+. ++|+.|+|++|+|++. +..+++|+.|+|++|+|+ .+|. ...+++|+.|+|++|++++.+|. ..
T Consensus 424 ~-l~~~~~--~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 424 V-VKTCIP--QTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp C-CCTTSC--TTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred c-ccchhc--CCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 4 444332 6899999999999864 257889999999999998 7776 46789999999999999988876 35
Q ss_pred CccccccccccCCccccCCC
Q 040845 433 SFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 433 ~~~~~~~~~~~~n~~~c~~~ 452 (824)
.+.++..+.+.+|++.|+|+
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHH
T ss_pred cCcccCEEEecCCCccCCCc
Confidence 67788888999999988875
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-47 Score=450.04 Aligned_cols=437 Identities=19% Similarity=0.223 Sum_probs=349.9
Q ss_pred CcccccccccCCcccccCCCCCcEEEc-cCCcccccccccc---------------------------------------
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYL-YNNRLQGEIIHEI--------------------------------------- 41 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L-~~n~l~~~~~~~~--------------------------------------- 41 (824)
|+|.+|+|++.+|+.|++|++|++|+| ++|.+.+..+-.-
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 567788888888888888888888888 7777766522110
Q ss_pred ------------cCCCCCCEEeCCC--CcCCcccChhhhCcCCCceeeccCCcccc------------------ccCccc
Q 040845 42 ------------GHLHNLGFLDLSQ--NKLLGTIPAAIFNVSTLKAFAVTNNSLSG------------------CLSSIT 89 (824)
Q Consensus 42 ------------~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~ 89 (824)
.....++.+.++. |++++ +|..|.++++|++|+|++|++++ +|..+.
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 1112333444433 77776 89999999999999999999998 777765
Q ss_pred cCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCcc-ccc-cCCccccCC-------CCCCEEEccCCcCCCCcCc
Q 040845 90 DVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNS-FSG-FIPSTFGNL-------RNLEWLTLYDNNLTSSTLD 160 (824)
Q Consensus 90 ~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~-i~~-~~~~~~~~l-------~~L~~L~L~~n~i~~~~~~ 160 (824)
+..+++|++|+|++|++.+.+|..|.++++|+.|+|++|+ +++ .+|..++++ ++|++|+|++|.++.++.
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~- 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA- 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-
Confidence 4469999999999999999999999999999999999998 887 677766555 499999999999986542
Q ss_pred ccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCC-CCEEEecCCccCCccch
Q 040845 161 LSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTD-LTTIVLGGNKLNGSIPI 239 (824)
Q Consensus 161 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~ 239 (824)
...+.++++|++|+|++|.+..++ .| +. .++|+.|++++|+++ .+|..+..+++ |+.|+|++|.++ .+|.
T Consensus 566 ---~~~l~~L~~L~~L~Ls~N~l~~lp--~~-~~-L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 566 ---SASLQKMVKLGLLDCVHNKVRHLE--AF-GT-NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp ---HHHHTTCTTCCEEECTTSCCCBCC--CC-CT-TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred ---hhhhhcCCCCCEEECCCCCcccch--hh-cC-CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 014789999999999999998544 33 22 468999999999999 88888999999 999999999999 6788
Q ss_pred hhcCCCC--CCEEEcccccCcccCCccc---c--ccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcc
Q 040845 240 TLGKLQK--LQDVDLEYNQLEGSIPDSI---C--LSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNF 312 (824)
Q Consensus 240 ~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~ 312 (824)
.+..++. |+.|+|++|++.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|+|++|+|+.+|..+
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 8877654 9999999999987665432 2 3458999999999999555555568999999999999999999876
Q ss_pred ccc--------ccccccccccccccCcCCcccc--ccccchhhhcccccccccCCCccCCCCCCCeEEccC------ccc
Q 040845 313 WSL--------KDILDLNLSSNCFSGPLPLEIR--NLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEY------NRL 376 (824)
Q Consensus 313 ~~l--------~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~------N~l 376 (824)
+.. ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 543 39999999999999 6788887 99999999999999997 688899999999999976 788
Q ss_pred cccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCCC-ccccccccccCCcc--ccCCCC
Q 040845 377 EGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGS-FGNFSAESFKGNEL--LCGSPN 453 (824)
Q Consensus 377 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~-~~~~~~~~~~~n~~--~c~~~~ 453 (824)
.+.+|..|..+++|+.|+|++|+| +.+|..+. ++|+.|+|++|++....+.... ........+..|+. .++|+.
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred cccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 889999999999999999999999 58998876 6999999999998765443111 11123344455544 457764
Q ss_pred C
Q 040845 454 L 454 (824)
Q Consensus 454 ~ 454 (824)
.
T Consensus 872 L 872 (876)
T 4ecn_A 872 L 872 (876)
T ss_dssp G
T ss_pred c
Confidence 3
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.2e-46 Score=447.51 Aligned_cols=421 Identities=20% Similarity=0.184 Sum_probs=348.7
Q ss_pred Ccccccccc-cCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChh--hhCcCCCceeeccC
Q 040845 2 PSIINNFLT-STTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAA--IFNVSTLKAFAVTN 78 (824)
Q Consensus 2 ~~l~~n~i~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~ 78 (824)
|+|++|.+. .+.|.+|.++++|++|+|++|+|++..|..|+++++|++|+|++|.+++..|.. |.++++|++|+|++
T Consensus 53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES
T ss_pred EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCC
Confidence 577888544 455899999999999999999999988999999999999999999999766665 99999999999999
Q ss_pred CccccccCccccCCCCCccEEEccCCeeeeecCccccCC--CCCceEeccCccccccCCccccCCCC------CCEEEcc
Q 040845 79 NSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNA--SKLSKLALEMNSFSGFIPSTFGNLRN------LEWLTLY 150 (824)
Q Consensus 79 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~L~~N~i~~~~~~~~~~l~~------L~~L~L~ 150 (824)
|.+++......+..+++|++|+|++|.+++..+..+..+ ++|+.|+|++|.+.+..+..++.+++ |++|+++
T Consensus 133 N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp CCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred CcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 999987654444579999999999999998888888887 89999999999999888877777665 8999999
Q ss_pred CCcCCCCcCccccc--------------------------------ccCCC--CCCCcEEECcCCCCCccCCcccccccc
Q 040845 151 DNNLTSSTLDLSFL--------------------------------SSLSN--CKSLTHISLSNNPLDGILPRTYVGNLS 196 (824)
Q Consensus 151 ~n~i~~~~~~~~~~--------------------------------~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 196 (824)
+|.++...... +. ..+.. .++|++|++++|.+.++.+..|.. .
T Consensus 213 ~n~l~~~~~~~-~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l 289 (844)
T 3j0a_A 213 GNGWTVDITGN-FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET--L 289 (844)
T ss_dssp SCCSSTTTTSG-GGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS--C
T ss_pred CCcCchhHHHH-HHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhc--C
Confidence 98765322110 00 11222 267888888888888777666543 4
Q ss_pred ccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEc
Q 040845 197 HSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELEL 276 (824)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 276 (824)
++|+.|++++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|+++...+..|..+++|+.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 57888888888888888888888888888888888888777888888888888888888888777777888888888888
Q ss_pred cCccccccC------------------Cc----------------------cccCCCCCcEEEcCCCCCCCCCCc--ccc
Q 040845 277 GGNKLSGSI------------------PA----------------------CFSNMTFLKVLSLGSNELTSIPLN--FWS 314 (824)
Q Consensus 277 ~~n~l~~~~------------------~~----------------------~~~~l~~L~~L~L~~N~l~~lp~~--~~~ 314 (824)
++|.+++.. |. .+.++++|+.|+|++|+++.++.. +..
T Consensus 370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 888776421 10 133788999999999999987654 566
Q ss_pred ccccccccccccccc-----CcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCcccccccc
Q 040845 315 LKDILDLNLSSNCFS-----GPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLIS 389 (824)
Q Consensus 315 l~~L~~L~l~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 389 (824)
+++|+.|++++|.++ +..+..|.++++|+.|+|++|++++.+|..|..+++|+.|+|++|+|++..+..+. ++
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 899999999999997 34556789999999999999999999999999999999999999999977666665 89
Q ss_pred ccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 390 LKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 390 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
|+.|+|++|+|++..|..+. +|+.|++++|++.|.++.
T Consensus 528 L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred ccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence 99999999999988887764 788999999999998874
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-46 Score=434.47 Aligned_cols=437 Identities=21% Similarity=0.235 Sum_probs=374.3
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|..|.++++|++|+|++|++++..+..|+++++|++|++++|++++..+.++.++++|++|++++|.+
T Consensus 57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 136 (570)
T 2z63_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcc
Confidence 67899999999999999999999999999999988889999999999999999999966666799999999999999999
Q ss_pred ccc--cCccccCCCCCccEEEccCCeeeeecCccccCCCCC----ceEeccCccccccCCccccCCCCCCEEEccCCcCC
Q 040845 82 SGC--LSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKL----SKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLT 155 (824)
Q Consensus 82 ~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L----~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~ 155 (824)
+++ +..+ .++++|++|++++|++++..+..+..+++| +.|++++|.+++..+..|..+ +|++|++++|...
T Consensus 137 ~~~~lp~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~ 213 (570)
T 2z63_A 137 QSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDS 213 (570)
T ss_dssp CCCCCCGGG--GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred ceecChhhh--cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccc
Confidence 874 4433 359999999999999998888889999998 899999999999988888876 8999999887322
Q ss_pred CC-------------------------------c----------------------CcccccccCCCCCCCcEEECcCCC
Q 040845 156 SS-------------------------------T----------------------LDLSFLSSLSNCKSLTHISLSNNP 182 (824)
Q Consensus 156 ~~-------------------------------~----------------------~~~~~~~~l~~l~~L~~L~Ls~n~ 182 (824)
.. + .....+..+..+++|++|++++|.
T Consensus 214 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp TTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred ccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 10 0 000112446778999999999999
Q ss_pred CCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccC-
Q 040845 183 LDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSI- 261 (824)
Q Consensus 183 l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 261 (824)
+..++.. + ..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++..
T Consensus 294 l~~l~~~-~-~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 294 IERVKDF-S-YNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp ECSCCBC-C-SCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE
T ss_pred chhhhhh-h-ccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc
Confidence 9875443 3 222 8999999999998 5554 5789999999999999866554 78999999999999998654
Q ss_pred -CccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC--cccccccccccccccccccCcCCccccc
Q 040845 262 -PDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL--NFWSLKDILDLNLSSNCFSGPLPLEIRN 338 (824)
Q Consensus 262 -~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 338 (824)
+..+..+++|+.|++++|++.+..+. +..+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..|..+.+
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 67888999999999999999976665 9999999999999999998754 5788999999999999999989999999
Q ss_pred cccchhhhccccccc-ccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCccccee
Q 040845 339 LKALIEIDFSMNNFS-GIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDL 417 (824)
Q Consensus 339 l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 417 (824)
+++|+.|++++|+++ +.+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 999999999999998 5788999999999999999999998889999999999999999999998888889999999999
Q ss_pred eccCCcccCCCCCCCCc-ccc--ccccccCCccccCCC
Q 040845 418 NLSFNKLKGEIPRGGSF-GNF--SAESFKGNELLCGSP 452 (824)
Q Consensus 418 ~l~~N~l~~~~p~~~~~-~~~--~~~~~~~n~~~c~~~ 452 (824)
++++|+++|.+|....+ ..+ ....+.+.+ .|..|
T Consensus 524 ~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 524 WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp ECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred EecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 99999999999875433 111 112344444 66655
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-46 Score=426.67 Aligned_cols=431 Identities=20% Similarity=0.185 Sum_probs=339.2
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
+++++|+|++ +|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|.+|.++++|++|+|++|++
T Consensus 5 l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 6789999996 555555 8999999999999988888999999999999999999988899999999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeee-ecCccccCCCCCceEeccCccccccCCccccCCCCC--CEEEccCCcC--CC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSG-TIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNL--EWLTLYDNNL--TS 156 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~L~~n~i--~~ 156 (824)
+.++.. .+++|++|+|++|++++ .+|..|+.+++|++|+|++|++++ ..|..+++| ++|++++|.+ ..
T Consensus 82 ~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 VKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 987776 58999999999999997 468999999999999999999986 467788888 9999999998 33
Q ss_pred CcCc-ccc--------------------cccCCCCCCCcEEECcCCC-------CCccCCccccccccccccEEEeecCc
Q 040845 157 STLD-LSF--------------------LSSLSNCKSLTHISLSNNP-------LDGILPRTYVGNLSHSLKNFYMYNCN 208 (824)
Q Consensus 157 ~~~~-~~~--------------------~~~l~~l~~L~~L~Ls~n~-------l~~~~~~~~~~~l~~~L~~L~l~~n~ 208 (824)
.... +.. ...+.++++|+.|++++|. +.+..+ .+ +. ..+|+.|++.+|.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l-~~-l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL-QT-NPKLSNLTLNNIE 231 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG-GG-CTTCCEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh-cc-ccchhhccccccc
Confidence 2211 000 0123345555566665554 222222 11 11 2356666666666
Q ss_pred ceecCCccCC---CCCCCCEEEecCCccCCccchhh-----cCCCCCCEEEcccccCcccCC-cccccc---CCccEEEc
Q 040845 209 VSGGIPEEIT---NLTDLTTIVLGGNKLNGSIPITL-----GKLQKLQDVDLEYNQLEGSIP-DSICLS---VELYELEL 276 (824)
Q Consensus 209 l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~---~~L~~L~l 276 (824)
+++..+..+. .+++|+.|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 6543222111 13477777777777776677766 7777777777777777 334 444444 56888888
Q ss_pred cCccccccCCccccCCCCCcEEEcCCCCCCC-CCCcccccccccccccccccccC--cCCccccccccchhhhccccccc
Q 040845 277 GGNKLSGSIPACFSNMTFLKVLSLGSNELTS-IPLNFWSLKDILDLNLSSNCFSG--PLPLEIRNLKALIEIDFSMNNFS 353 (824)
Q Consensus 277 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~ 353 (824)
++|.+.... .+..+++|++|++++|+++. +|..+..+++|+.|++++|++++ ..|..+.++++|+.|++++|+++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 888876432 23688999999999999997 67888999999999999999986 45677999999999999999999
Q ss_pred ccCC-CccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC-C
Q 040845 354 GIIP-MEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR-G 431 (824)
Q Consensus 354 ~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~ 431 (824)
+.+| ..+..+++|+.|++++|++++..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|++++|+++..++. .
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 8444 4588999999999999999887776664 79999999999999 8898888999999999999999965444 4
Q ss_pred CCccccccccccCCccccCCC
Q 040845 432 GSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 432 ~~~~~~~~~~~~~n~~~c~~~ 452 (824)
..+.++..+.+.+|++.|+|+
T Consensus 465 ~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTCTTCCEEECCSSCBCCCHH
T ss_pred ccCCcccEEECcCCCCcccCC
Confidence 557778889999999999875
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-46 Score=435.47 Aligned_cols=383 Identities=17% Similarity=0.226 Sum_probs=338.5
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCC--------------------------------------------------
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNN-------------------------------------------------- 31 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n-------------------------------------------------- 31 (824)
|+|++|++++.+|++|+++++|++|+|++|
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 678999999999999999999999999998
Q ss_pred ----------------------------cccccccccccCCCCCCEEeCCCCcCCcc-----------------cChhhh
Q 040845 32 ----------------------------RLQGEIIHEIGHLHNLGFLDLSQNKLLGT-----------------IPAAIF 66 (824)
Q Consensus 32 ----------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~ 66 (824)
++++ +|..|+++++|++|+|++|.+++. +|..+.
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~ 244 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence 4455 788999999999999999999975 999999
Q ss_pred --CcCCCceeeccCCccccccCccccCCCCCccEEEccCCe-eee-ecCccccCC------CCCceEeccCccccccCCc
Q 040845 67 --NVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNN-FSG-TIPHFIFNA------SKLSKLALEMNSFSGFIPS 136 (824)
Q Consensus 67 --~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~l~~l------~~L~~L~L~~N~i~~~~~~ 136 (824)
++++|++|+|++|++.+..+... ..+++|++|+|++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|.
T Consensus 245 ~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp GGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred hcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 99999999999999887554332 369999999999998 998 789888886 99999999999999 7788
Q ss_pred --cccCCCCCCEEEccCCcCC-CCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecC
Q 040845 137 --TFGNLRNLEWLTLYDNNLT-SSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGI 213 (824)
Q Consensus 137 --~~~~l~~L~~L~L~~n~i~-~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~ 213 (824)
.|+++++|++|++++|+++ .++ .+..+++|++|++++|.+..++. .+ ..++.+|++|++++|.++ .+
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-------~~~~l~~L~~L~L~~N~l~~lp~-~l-~~l~~~L~~L~Ls~N~l~-~l 392 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-------AFGSEIKLASLNLAYNQITEIPA-NF-CGFTEQVENLSFAHNKLK-YI 392 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-------CCEEEEEESEEECCSSEEEECCT-TS-EEECTTCCEEECCSSCCS-SC
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-------hhCCCCCCCEEECCCCccccccH-hh-hhhcccCcEEEccCCcCc-cc
Confidence 9999999999999999998 543 47888999999999999985543 33 344444999999999999 78
Q ss_pred CccCCCCC--CCCEEEecCCccCCccchhhc-------CCCCCCEEEcccccCcccCCccccccCCccEEEccCcccccc
Q 040845 214 PEEITNLT--DLTTIVLGGNKLNGSIPITLG-------KLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGS 284 (824)
Q Consensus 214 ~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 284 (824)
|..+..++ +|+.|++++|.+.+..|..|. .+++|++|+|++|+++...+..+..+++|+.|++++|+++..
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 88888765 999999999999999998888 888999999999999955555566799999999999999955
Q ss_pred CCccccCCC-------CCcEEEcCCCCCCCCCCccc--ccccccccccccccccCcCCccccccccchhhhc------cc
Q 040845 285 IPACFSNMT-------FLKVLSLGSNELTSIPLNFW--SLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDF------SM 349 (824)
Q Consensus 285 ~~~~~~~l~-------~L~~L~L~~N~l~~lp~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l------~~ 349 (824)
.+..+.... +|+.|+|++|+++.+|..+. .+++|+.|+|++|++++ +|..+.++++|+.|+| ++
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 555554443 99999999999999999987 89999999999999997 8999999999999999 56
Q ss_pred ccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccC
Q 040845 350 NNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 350 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
|++.+.+|..++.+++|+.|+|++|+++ .+|..+. ++|+.|+|++|+++
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 8888899999999999999999999995 7887766 79999999999887
No 33
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=8.9e-46 Score=397.69 Aligned_cols=269 Identities=21% Similarity=0.284 Sum_probs=201.4
Q ss_pred HhhccCCCCceeeeccceEEEEEEEC----CCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCee
Q 040845 524 QATDKFSENNLIGRGGFGSVYKARIR----DGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 524 ~~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 598 (824)
...++|++.+.||+|+||+||+|+.+ +++.||||++... .....+.+|+++++.+ +||||+++++++.+.++.
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 45678999999999999999999753 4688999998654 2345678899999998 699999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-CcEEEeeccccccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN-MVAHLSDFGIAKLL 677 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~Dfg~a~~~ 677 (824)
|+||||+++|+|.+++. .+++.++..++.|++.||+||| +++|+||||||+|||++.+ +.+||+|||+|+..
T Consensus 96 ~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~ 168 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGT 168 (361)
T ss_dssp EEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCccc
Confidence 99999999999999984 4889999999999999999999 9999999999999999876 89999999999865
Q ss_pred CCCCCc--------------------------cccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCc
Q 040845 678 TGEDQS--------------------------MTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTD 730 (824)
Q Consensus 678 ~~~~~~--------------------------~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~ 730 (824)
...... ...+..+||++|+|||++.+. .|+.++||||+||++|||+||+.||.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 169 HDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp TTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSS
T ss_pred CCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCC
Confidence 432211 112335799999999988765 58999999999999999999999996
Q ss_pred ccccCcchhhhhhhhhC---------------------CCcc-hhhcc---------ccccC---chhhhhhhHHHHHHH
Q 040845 731 ELFNGEMTLKHWVNDCL---------------------PIST-MEVVD---------ANLLS---QEDIHFVAKEQCVSF 776 (824)
Q Consensus 731 ~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~---------~~~~~---~~~~~~~~~~~~~~~ 776 (824)
........+..+..... +... ..... +.... ............+++
T Consensus 249 ~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~ 328 (361)
T 4f9c_A 249 KASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDE 328 (361)
T ss_dssp CCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHH
T ss_pred CCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHH
Confidence 53222111111111000 0000 00000 00000 000000111235677
Q ss_pred HHHHHHHccccCCCCCCCHHHHHHH
Q 040845 777 VFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 777 l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
+.+|+.+|++.||++||||+|+++|
T Consensus 329 a~DLl~~lL~~dP~~R~ta~eaL~H 353 (361)
T 4f9c_A 329 AYDLLDKLLDLNPASRITAEEALLH 353 (361)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHCcCChhHCcCHHHHhcC
Confidence 8999999999999999999999875
No 34
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.9e-46 Score=402.65 Aligned_cols=270 Identities=26% Similarity=0.301 Sum_probs=203.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeec------CC
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSN------EE 596 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~ 596 (824)
.++|++.+.||+|+||+||+|+++ +|+.||||+++.... ...+.+.+|+++|+.++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 367999999999999999999875 699999999965432 234567889999999999999999998753 46
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
..|+||||++ |+|.+++...+ .+++.++..++.||+.||+||| +++||||||||+|||++.++.+||+|||+|+.
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 7899999996 68999998765 7999999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCC--ccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc--
Q 040845 677 LTGEDQ--SMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST-- 751 (824)
Q Consensus 677 ~~~~~~--~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-- 751 (824)
+..... .......+||+.|||||++.+. .++.++||||+||++|||++|++||.+.... ..+..+.........
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHhcCCCChHH
Confidence 643321 2233456899999999998765 5699999999999999999999999763211 111111111111100
Q ss_pred hhhccc--------cccCchhhh-hhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 752 MEVVDA--------NLLSQEDIH-FVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 752 ~~~~~~--------~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...... ......... .......+.++.+|+.+||..||++||||+|+++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 345 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRH 345 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcC
Confidence 000000 000000000 00112346678999999999999999999999875
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-45 Score=422.08 Aligned_cols=416 Identities=19% Similarity=0.212 Sum_probs=343.7
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCc-ccChhhhCcCCCceeeccCCc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLG-TIPAAIFNVSTLKAFAVTNNS 80 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 80 (824)
|+|++|+|+++.|.+|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++ ..|..+.++++|++|++++|+
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred EECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 6789999999999999999999999999999998888789999999999999999986 357789999999999999998
Q ss_pred -cccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcC
Q 040845 81 -LSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTL 159 (824)
Q Consensus 81 -l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 159 (824)
+..++.. .+.++++|++|++++|++++..|..+..+++|++|++++|.+.......+..+++|++|++++|+++..+.
T Consensus 135 ~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (549)
T 2z81_A 135 TFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213 (549)
T ss_dssp SCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCC
T ss_pred cccccCHh-hhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccc
Confidence 5555433 33479999999999999999999999999999999999999885444445679999999999999987642
Q ss_pred cccccccCCCCCCCcEEECcCCCCCccCCccccc--cccccccEEEeecCcceecCC---------cc------------
Q 040845 160 DLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVG--NLSHSLKNFYMYNCNVSGGIP---------EE------------ 216 (824)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~--~l~~~L~~L~l~~n~l~~~~~---------~~------------ 216 (824)
.. ......+++|++|++++|.+.+..+..+.. ....+|+.+++.+|.+.+... ..
T Consensus 214 ~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 214 SP--LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CC--CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cc--cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 11 122345778888888888776543332211 112467777777776654210 00
Q ss_pred --------------CCCCCCCCEEEecCCccCCccchhh-cCCCCCCEEEcccccCcccCCc---cccccCCccEEEccC
Q 040845 217 --------------ITNLTDLTTIVLGGNKLNGSIPITL-GKLQKLQDVDLEYNQLEGSIPD---SICLSVELYELELGG 278 (824)
Q Consensus 217 --------------l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~ 278 (824)
+..+.+|+.|++++|.+. .+|..+ ..+++|++|+|++|++++..|. .+..+++|+.|++++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence 122367999999999998 455554 6899999999999999976643 477889999999999
Q ss_pred ccccccCC--ccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccC
Q 040845 279 NKLSGSIP--ACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGII 356 (824)
Q Consensus 279 n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 356 (824)
|++++..+ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|.++. +|..+ .++|+.|++++|++++.+
T Consensus 371 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~ 447 (549)
T 2z81_A 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS 447 (549)
T ss_dssp SCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC
T ss_pred CcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc
Confidence 99986543 56889999999999999999999999999999999999999984 44443 268999999999999653
Q ss_pred CCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 357 PMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 357 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
..+++|++|+|++|+|+ .+|. ...+++|+.|+|++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 448 ----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 448 ----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp ----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 57899999999999999 5776 57899999999999999988888899999999999999999999884
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-45 Score=420.20 Aligned_cols=413 Identities=20% Similarity=0.230 Sum_probs=346.9
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|+++++|++|||++|+++ .+|.. .+++|++|+|++|++
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAF 102 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCcc
Confidence 689999999999999999999999999999999888999999999999999999999 56666 899999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCC--ceEeccCccc--cccCCccccC-----------------
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKL--SKLALEMNSF--SGFIPSTFGN----------------- 140 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L--~~L~L~~N~i--~~~~~~~~~~----------------- 140 (824)
++++....+..+++|++|+|++|++++ ..+..+++| ++|+|++|.+ .+..|..|..
T Consensus 103 ~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 103 DALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp SSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred ccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchh
Confidence 875432233469999999999999985 467778888 9999999999 6666666655
Q ss_pred ---------CCCCCEEEccCCc----CCCCcCcccccccCCCCCCCcEEECcCCCCCccCCcccccc-ccccccEEEeec
Q 040845 141 ---------LRNLEWLTLYDNN----LTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGN-LSHSLKNFYMYN 206 (824)
Q Consensus 141 ---------l~~L~~L~L~~n~----i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~~~L~~L~l~~ 206 (824)
+++|+.|++++|. +..... ..+.+..+++|++|++++|.+.+.....+... ...+|++|++++
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLS---ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHH---HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred hhhhhhhhcccceeeccccccccccccceeec---chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 5677777777775 111110 12357889999999999998875432222111 124899999999
Q ss_pred CcceecCCccC-----CCCCCCCEEEecCCccCCccchhhcCC---CCCCEEEcccccCcccCCccccccCCccEEEccC
Q 040845 207 CNVSGGIPEEI-----TNLTDLTTIVLGGNKLNGSIPITLGKL---QKLQDVDLEYNQLEGSIPDSICLSVELYELELGG 278 (824)
Q Consensus 207 n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 278 (824)
|++++.+|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+.... .+..+++|++|++++
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred ccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeEC
Confidence 99999999998 9999999999999999 2332555544 78999999999987432 126789999999999
Q ss_pred ccccccCCccccCCCCCcEEEcCCCCCCCC---CCcccccccccccccccccccCcCCc-cccccccchhhhcccccccc
Q 040845 279 NKLSGSIPACFSNMTFLKVLSLGSNELTSI---PLNFWSLKDILDLNLSSNCFSGPLPL-EIRNLKALIEIDFSMNNFSG 354 (824)
Q Consensus 279 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---p~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~ 354 (824)
|++++..|..++++++|++|++++|+++.+ |..+..+++|+.|++++|.+++.+|. .+..+++|+.|++++|++++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 999998999999999999999999999965 45688899999999999999984554 58899999999999999988
Q ss_pred cCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCccc-ccCCcccceeeccCCcccCCCCC
Q 040845 355 IIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVS-LEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 355 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|+ .+|.. +..+++|+.|++++|+++|.++.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8777665 79999999999999 78888889999999999999999 66665 89999999999999999998763
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.5e-44 Score=423.54 Aligned_cols=417 Identities=17% Similarity=0.204 Sum_probs=348.4
Q ss_pred CCCcEEEccCCcccccccccccCCCCCCEEeC-CCCcCCcccChhh----------------------------------
Q 040845 21 SNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDL-SQNKLLGTIPAAI---------------------------------- 65 (824)
Q Consensus 21 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~---------------------------------- 65 (824)
..++.|+|++|.+.|.+|.+|++|++|++||| ++|.+++..|-..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 9998765522110
Q ss_pred -----------------hCcCCCceeeccC--CccccccCccccCCCCCccEEEccCCeeee-----------------e
Q 040845 66 -----------------FNVSTLKAFAVTN--NSLSGCLSSITDVGLPNLEVLYLWGNNFSG-----------------T 109 (824)
Q Consensus 66 -----------------~~l~~L~~L~L~~--n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~ 109 (824)
.....++.+.+.. |+++++|..+. .+++|++|+|++|++++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~--~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ--RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHh--cCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1122344455544 88888776654 59999999999999998 3
Q ss_pred cCcccc--CCCCCceEeccCccccccCCccccCCCCCCEEEccCCc-CCC--CcCcccccc-cCCCCCCCcEEECcCCCC
Q 040845 110 IPHFIF--NASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNN-LTS--STLDLSFLS-SLSNCKSLTHISLSNNPL 183 (824)
Q Consensus 110 ~~~~l~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~-i~~--~~~~~~~~~-~l~~l~~L~~L~Ls~n~l 183 (824)
+|..++ ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ ++. +|..+.-+. .+..+++|++|+|++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888887 99999999999999999999999999999999999998 774 443322222 566778999999999999
Q ss_pred CccCCc-cccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCC-CCEEEcccccCcccC
Q 040845 184 DGILPR-TYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQK-LQDVDLEYNQLEGSI 261 (824)
Q Consensus 184 ~~~~~~-~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~ 261 (824)
..++.. .+ +. .++|+.|++++|+++ .+| .|..+++|+.|+|++|++. .+|..+..+++ |++|+|++|+++ .+
T Consensus 561 ~~ip~~~~l-~~-L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 EEFPASASL-QK-MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CBCCCHHHH-TT-CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CccCChhhh-hc-CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 955441 33 33 458999999999999 777 9999999999999999999 78888999999 999999999999 77
Q ss_pred CccccccCC--ccEEEccCccccccCCccc---c--CCCCCcEEEcCCCCCCCCCCccc-ccccccccccccccccCcCC
Q 040845 262 PDSICLSVE--LYELELGGNKLSGSIPACF---S--NMTFLKVLSLGSNELTSIPLNFW-SLKDILDLNLSSNCFSGPLP 333 (824)
Q Consensus 262 ~~~~~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~lp~~~~-~l~~L~~L~l~~N~l~~~~~ 333 (824)
|..+..+.. |+.|++++|++.+.+|... . .+++|+.|+|++|.++.+|..+. .+++|+.|+|++|+++...+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 888877654 9999999999997765432 2 34589999999999999998865 78999999999999994333
Q ss_pred cccc-------ccccchhhhcccccccccCCCccC--CCCCCCeEEccCccccccCCccccccccccEEEccC------c
Q 040845 334 LEIR-------NLKALIEIDFSMNNFSGIIPMEIG--SLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSY------N 398 (824)
Q Consensus 334 ~~~~-------~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~------N 398 (824)
..+. ++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 3333 3349999999999999 6788887 99999999999999996 798999999999999976 8
Q ss_pred ccCCCCcccccCCcccceeeccCCcccCCCCCCCCccccccccccCCcccc
Q 040845 399 NLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLC 449 (824)
Q Consensus 399 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 449 (824)
++.+.+|..+..+++|+.|+|++|++ +.+|.. ..+++..+.+.+|+...
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 88899999999999999999999999 777775 33678888889997543
No 38
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.2e-44 Score=412.69 Aligned_cols=253 Identities=20% Similarity=0.282 Sum_probs=211.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||+||+|+.+ +|+.||+|++........+.+.+|+++|+.++|||||++++++.++...|+||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 468999999999999999999875 5999999999766555567889999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC--CcEEEeecccccccCCCCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN--MVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~--~~~kl~Dfg~a~~~~~~~~ 682 (824)
++||+|.+++......+++.++..++.||+.||+||| +++|+||||||+|||++.+ +.+||+|||+|+.+....
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~- 311 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ- 311 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-
Confidence 9999999999766667999999999999999999999 9999999999999999854 899999999999875332
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+....+ .+.........
T Consensus 312 --~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~-~~~~i~~~~~~-------------- 374 (573)
T 3uto_A 312 --SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDE-TLRNVKSCDWN-------------- 374 (573)
T ss_dssp --EEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCCC--------------
T ss_pred --ceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHH-HHHHHHhCCCC--------------
Confidence 2334579999999999999999999999999999999999999997632211 11111111000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+|+.+||+.||++|||+.|+++|
T Consensus 375 --~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~H 411 (573)
T 3uto_A 375 --MDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEH 411 (573)
T ss_dssp --CCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred --CCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0001112346678999999999999999999999875
No 39
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.3e-44 Score=407.77 Aligned_cols=250 Identities=22% Similarity=0.298 Sum_probs=202.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhH---HHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSF---DVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~---~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||+||+|+.+ +|+.||||++.+.. ......+ ..++.+++.++|||||+++++|.+++..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 468999999999999999999875 59999999997542 1222223 3446777888999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
|+||||++||+|.+++.+.+ .+++.++..++.||+.||+||| +++||||||||+|||++.+|.+||+|||+|+.+.
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 99999999999999998765 7899999999999999999999 9999999999999999999999999999998764
Q ss_pred CCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
... ....+||+.|||||++.. ..|+.++|+||+||++|||++|++||.+....+. ........ ..
T Consensus 344 ~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~--~~i~~~i~--------~~ 409 (689)
T 3v5w_A 344 KKK----PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK--HEIDRMTL--------TM 409 (689)
T ss_dssp SCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCH--HHHHHHHH--------HC
T ss_pred CCC----CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH--HHHHHhhc--------CC
Confidence 332 223579999999999965 5799999999999999999999999976332211 11111000 00
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRIN-----AKEIVAK 801 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-----~~evl~~ 801 (824)
....+..+++++.+|+.+||+.||++|++ ++|+++|
T Consensus 410 --------~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~H 450 (689)
T 3v5w_A 410 --------AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKES 450 (689)
T ss_dssp --------CCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTS
T ss_pred --------CCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcC
Confidence 00112235667899999999999999998 7888765
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.7e-43 Score=403.38 Aligned_cols=411 Identities=19% Similarity=0.182 Sum_probs=286.1
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
+++++|+|+++ |..+. ++|++|+|++|+|++..+.+|+++++|++|+|++|++++..|++|.++++|++|+|++|++
T Consensus 36 l~ls~~~L~~i-p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 36 VDYSNRNLTHV-PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EECTTSCCCSC-CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEcCCCCCccC-CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 57889999984 44443 8999999999999988888999999999999999999988899999999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeee-cCccccCCCCCceEeccCccccccCCccccCCCCC--CEEEccCCcC--CC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGT-IPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNL--EWLTLYDNNL--TS 156 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L--~~L~L~~n~i--~~ 156 (824)
+.++.. .+++|++|+|++|++++. .|..|.++++|++|+|++|+++.. .+.++++| ++|++++|.+ +.
T Consensus 113 ~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 113 QNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 988776 589999999999999864 468999999999999999999864 45556666 9999999998 44
Q ss_pred CcCcc-cc--------------------cccCCCCCCCcEEECcCCCCC----------------------------ccC
Q 040845 157 STLDL-SF--------------------LSSLSNCKSLTHISLSNNPLD----------------------------GIL 187 (824)
Q Consensus 157 ~~~~~-~~--------------------~~~l~~l~~L~~L~Ls~n~l~----------------------------~~~ 187 (824)
..... .. ...+..+++|+.|++++|... +..
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 32211 00 001234556666666666310 000
Q ss_pred Cccc-cccccccccEEEeecCcceecCCccC-----CCCCCCCEEEecCCccCCccchhhcC---CCCCCEEEcccccCc
Q 040845 188 PRTY-VGNLSHSLKNFYMYNCNVSGGIPEEI-----TNLTDLTTIVLGGNKLNGSIPITLGK---LQKLQDVDLEYNQLE 258 (824)
Q Consensus 188 ~~~~-~~~l~~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~ 258 (824)
.... ......+|++|++++|.+++.+|..+ .+++.|+.++++.|.+. .....+.. ..+|++|++++|.+.
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCcc
Confidence 0000 00001256777777777766666665 55555555555555551 21122222 256777777777765
Q ss_pred ccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCC---CcccccccccccccccccccC-cCCc
Q 040845 259 GSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIP---LNFWSLKDILDLNLSSNCFSG-PLPL 334 (824)
Q Consensus 259 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp---~~~~~l~~L~~L~l~~N~l~~-~~~~ 334 (824)
... ....+++|++|++++|++++..|..++++++|++|++++|+++.++ ..+..+++|+.|++++|.+++ ..+.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 221 1245677777777777777767777777777777777777777654 346667777777777777776 3333
Q ss_pred cccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCccc-ccCCcc
Q 040845 335 EIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVS-LEKLSY 413 (824)
Q Consensus 335 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~ 413 (824)
.+..+++|+.|++++|++++..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|+ .+|.. +..+++
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 466777777777777777665555443 57777777777777 45655567777777777777777 45544 677777
Q ss_pred cceeeccCCcccCCCC
Q 040845 414 LKDLNLSFNKLKGEIP 429 (824)
Q Consensus 414 L~~L~l~~N~l~~~~p 429 (824)
|+.|++++|+|+|.+|
T Consensus 499 L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCEECCSCCBCCCHH
T ss_pred CCEEEecCCCcCCCcc
Confidence 7777777777777665
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.7e-43 Score=409.82 Aligned_cols=434 Identities=21% Similarity=0.220 Sum_probs=305.1
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|.+|.++++|++|+|++|+|++..+++|+++++|++|+|++|+|++..+.+|.++++|++|+|++|++
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 56667777777766777777777777777777765566677777777777777777655555666777777777777777
Q ss_pred ccccCccccCCCCCccEEEccCCeeeee-cCccccCCCCCceEeccCccccccCCccccCCCCCC----EEEccCCcCCC
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGT-IPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLE----WLTLYDNNLTS 156 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~----~L~L~~n~i~~ 156 (824)
++++.... .++++|++|+|++|.+++. .|..+..+++|++|+|++|++++..+..|..+.+++ .++++.|.++.
T Consensus 137 ~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 137 ASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 66554322 3566777777777776543 456666677777777777777666666655544332 45566555544
Q ss_pred CcCcccccccCCCCCCCcEEECcCC-------------------------------------------------------
Q 040845 157 STLDLSFLSSLSNCKSLTHISLSNN------------------------------------------------------- 181 (824)
Q Consensus 157 ~~~~~~~~~~l~~l~~L~~L~Ls~n------------------------------------------------------- 181 (824)
++.. ......+..|++++|
T Consensus 216 i~~~------~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 216 IQPG------AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp ECTT------TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred cCcc------cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 3221 111112222222222
Q ss_pred ---------------------------CCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccC
Q 040845 182 ---------------------------PLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLN 234 (824)
Q Consensus 182 ---------------------------~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 234 (824)
.+..+.+.. ...+++.|++.+|.+.+..+ ..+..|+.+++.+|.+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS----YNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG----SCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSC
T ss_pred hhcccccchhhhhhhhcccccccccccccccccccc----cchhhhhhhcccccccCcCc---ccchhhhhcccccccCC
Confidence 211111100 11234555555555443322 12345555555555554
Q ss_pred CccchhhcCCCCCCEEEcccccCcc--cCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC--
Q 040845 235 GSIPITLGKLQKLQDVDLEYNQLEG--SIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL-- 310 (824)
Q Consensus 235 ~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-- 310 (824)
. +..+..+++|+.|++++|.+.. ..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++.+|.....+.
T Consensus 363 ~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 363 N--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp C--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred C--Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccc
Confidence 2 2234467889999999998863 345566778889999999988874 45568889999999999988776543
Q ss_pred cccccccccccccccccccCcCCccccccccchhhhcccccc-cccCCCccCCCCCCCeEEccCccccccCCcccccccc
Q 040845 311 NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNF-SGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLIS 389 (824)
Q Consensus 311 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 389 (824)
.+..+++++.++++.|.+.+..+..+..++.|+.|++++|.+ .+..|..|..+++|+.|+|++|+|++..|..|.++++
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 367899999999999999988999999999999999999985 4567889999999999999999999888999999999
Q ss_pred ccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCC-Cc-cccccccccCCccccCCC
Q 040845 390 LKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGG-SF-GNFSAESFKGNELLCGSP 452 (824)
Q Consensus 390 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~-~~-~~~~~~~~~~n~~~c~~~ 452 (824)
|++|+|++|+|++..|..+..+++|+.|+|++|++++.+|... .+ .++..+.+.+||+.|+|.
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999998888899999999999999999999888642 33 567888999999999986
No 42
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=1.3e-43 Score=379.20 Aligned_cols=281 Identities=33% Similarity=0.528 Sum_probs=230.5
Q ss_pred cHHHHHHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCe
Q 040845 518 SYLELFQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEF 597 (824)
Q Consensus 518 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 597 (824)
++.++..++++|++.+.||+|+||.||+|++++++.||||++........+.+.+|+.+++.++||||+++++++.+.+.
T Consensus 30 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 109 (321)
T 2qkw_B 30 PLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109 (321)
T ss_dssp CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTC
T ss_pred cHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCe
Confidence 33445567789999999999999999999988899999999877666667889999999999999999999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSN---YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIA 674 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a 674 (824)
.++||||+++|+|.+++.... ..+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~ 186 (321)
T 2qkw_B 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGIS 186 (321)
T ss_dssp CEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTC
T ss_pred EEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccc
Confidence 999999999999999997654 35899999999999999999999 899999999999999999999999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCc-chhhhhhhhhCC-Ccch
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGE-MTLKHWVNDCLP-ISTM 752 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~-~~~~~~~~~~~~-~~~~ 752 (824)
................||+.|+|||.+.+..++.++||||||+++|||++|+.||......+ .....|...... ....
T Consensus 187 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (321)
T 2qkw_B 187 KKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266 (321)
T ss_dssp EECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCC
T ss_pred cccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHH
Confidence 87544333333344568999999999988899999999999999999999999997644332 223333222111 1112
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
..+++... ...+..++..+.+++.+||+.||++|||+.|++++|+.+.+
T Consensus 267 ~~~~~~~~------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 267 QIVDPNLA------DKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SSSSSSCT------TCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HhcChhhc------cccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 22222211 11234678889999999999999999999999999998865
No 43
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=4.5e-43 Score=374.89 Aligned_cols=276 Identities=23% Similarity=0.325 Sum_probs=213.9
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCC----eeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE----FKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv 601 (824)
.++|++.+.||+|+||+||+|++. ++.||||++.... ........|+.++++++||||+++++++.+.. ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 468999999999999999999987 8999999986543 33445566999999999999999999997743 46999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC----------CeEecCCCCCCeeeCCCCcEEEeec
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSA----------PVIHCDLKPSNVLLDDNMVAHLSDF 671 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~----------~ivH~Dlk~~Nill~~~~~~kl~Df 671 (824)
|||+++|+|.+++... .+++.+++.++.|+++|++||| +. +|+||||||+||+++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 9999999999999765 4899999999999999999999 88 9999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccccCccCcCC-----CCCCccchHHHHHHHHHHHHhCCCCCcccccCcc-hhhhhhhh
Q 040845 672 GIAKLLTGEDQSMTQTQTLATIGYMAPEYGRE-----GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM-TLKHWVND 745 (824)
Q Consensus 672 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~-~~~~~~~~ 745 (824)
|+|+.+.............||+.|+|||++.+ ..++.++|||||||++|||+||+.||........ ........
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~ 255 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ 255 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence 99987755444334445679999999999876 3566789999999999999999999976432211 11111000
Q ss_pred hCCCc-chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 746 CLPIS-TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 746 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
..... ..+...................++..+.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 256 HPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 00000 0011111111111112223345677899999999999999999999999999998764
No 44
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.2e-43 Score=372.08 Aligned_cols=265 Identities=25% Similarity=0.383 Sum_probs=219.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|.+.+.||+|+||+||+|++. +++.||+|.+........+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 467899999999999999999875 5899999998665556677899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
+++|+|.+++......+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++..........
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 9999999999987678999999999999999999999 9999999999999999999999999999998764332211
Q ss_pred ------------ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcch
Q 040845 685 ------------TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTM 752 (824)
Q Consensus 685 ------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 752 (824)
......||+.|+|||.+.+..++.++||||||+++|||++|..|+...............
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~-------- 237 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVR-------- 237 (310)
T ss_dssp --------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHH--------
T ss_pred cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhh--------
Confidence 111456899999999999999999999999999999999999998764332211110000
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.......+..++..+.+++.+||+.||++|||+.|+++.|++++..+..
T Consensus 238 ----------~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 238 ----------GFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp ----------HHHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred ----------ccccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 0001111234566789999999999999999999999999999876543
No 45
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.1e-42 Score=373.10 Aligned_cols=282 Identities=37% Similarity=0.554 Sum_probs=232.2
Q ss_pred ccccccHHHHHHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEee
Q 040845 513 TWRRFSYLELFQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISS 591 (824)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~ 591 (824)
....+++.++....++|++.+.||+|+||.||+|+.++|+.||||++..... .....+.+|+++++.++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 3567889999999999999999999999999999988899999999875432 233468899999999999999999999
Q ss_pred eecCCeeEEEEeccCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHhhcCCCC---CeEecCCCCCCeeeCCCCc
Q 040845 592 CSNEEFKALVLEYMPHGSLEKYLHSSN---YSLDIFQRLNIMIDVASALEYLHFGYSA---PVIHCDLKPSNVLLDDNMV 665 (824)
Q Consensus 592 ~~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~---~ivH~Dlk~~Nill~~~~~ 665 (824)
+.++...++||||+++|+|.+++.... ..+++..+..++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~ivH~Dlkp~Nil~~~~~~ 172 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLH---DHCDPKIIHRDVKAANILLDEEFE 172 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHH---HSSSSCEECCCCSGGGEEECTTCC
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCeEeCCCchhhEEECCCCC
Confidence 999999999999999999999998654 34899999999999999999999 66 9999999999999999999
Q ss_pred EEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCccc---ccCcchhhhh
Q 040845 666 AHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDEL---FNGEMTLKHW 742 (824)
Q Consensus 666 ~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~---~~~~~~~~~~ 742 (824)
+||+|||++........ .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||+.. .........|
T Consensus 173 ~kl~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~ 251 (326)
T 3uim_A 173 AVVGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDW 251 (326)
T ss_dssp EEECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHH
T ss_pred EEeccCccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHH
Confidence 99999999987643322 2233455899999999998888999999999999999999999999642 2233445556
Q ss_pred hhhhCCCc-chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHH
Q 040845 743 VNDCLPIS-TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLK 804 (824)
Q Consensus 743 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~ 804 (824)
+....... .....+.... ...+..++..+.+++.+||+.||++|||+.|++++|+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 252 VKGLLKEKKLEALVDVDLQ------GNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp HTTTTSSCCSTTSSCTTCT------TSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred HHHHhhchhhhhhcChhhc------cccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 55444333 2222222221 12234567889999999999999999999999999986
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-42 Score=387.09 Aligned_cols=371 Identities=22% Similarity=0.218 Sum_probs=226.7
Q ss_pred CCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEe
Q 040845 45 HNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLA 124 (824)
Q Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 124 (824)
++|++|||++|.+++..|..|.++++|++|+|++|.+.+......+.++++|++|+|++|++++..|..|..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34444444444444444444444444444444444443222111122344444444444444444444444444555555
Q ss_pred ccCccccccCCcc--ccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEE
Q 040845 125 LEMNSFSGFIPST--FGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNF 202 (824)
Q Consensus 125 L~~N~i~~~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L 202 (824)
|++|++++..+.. |.++++|++|+|++|+++..... ..+.++++|++|++++|.+.+..+..+...-..+++.|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA----SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcc----cccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 5555444322222 44445555555555544443211 01344445555555555444444433322212334444
Q ss_pred EeecCcceecCCc--------cCCCCCCCCEEEecCCccCCccchhhcCC---CCCCEEEcccccCcccCCccccccCCc
Q 040845 203 YMYNCNVSGGIPE--------EITNLTDLTTIVLGGNKLNGSIPITLGKL---QKLQDVDLEYNQLEGSIPDSICLSVEL 271 (824)
Q Consensus 203 ~l~~n~l~~~~~~--------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L 271 (824)
++++|.+.+..+. .+..+++|++|++++|++++..|..+... ++|+.|++++|.+.+...
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------- 256 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------- 256 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc---------
Confidence 4444444432222 23456778888888888877777666543 778888888776653211
Q ss_pred cEEEccCccccccCCccccC--CCCCcEEEcCCCCCCCC-CCcccccccccccccccccccCcCCccccccccchhhhcc
Q 040845 272 YELELGGNKLSGSIPACFSN--MTFLKVLSLGSNELTSI-PLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFS 348 (824)
Q Consensus 272 ~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 348 (824)
..+.+.+..+..+.. .++|++|++++|.++.+ |..+..+++|+.|++++|.+++..|..|.++++|+.|+|+
T Consensus 257 -----~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 257 -----GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp -----TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred -----chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 112222222223332 25677888888877765 4446677788888888888887778888889999999999
Q ss_pred cccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCC
Q 040845 349 MNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEI 428 (824)
Q Consensus 349 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 428 (824)
+|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+++|.+
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99998888888999999999999999999888889999999999999999999766677889999999999999999999
Q ss_pred CCCCC
Q 040845 429 PRGGS 433 (824)
Q Consensus 429 p~~~~ 433 (824)
|....
T Consensus 412 ~~~~~ 416 (455)
T 3v47_A 412 PRIDY 416 (455)
T ss_dssp TTTHH
T ss_pred CcchH
Confidence 86443
No 47
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=1.3e-42 Score=377.91 Aligned_cols=261 Identities=27% Similarity=0.447 Sum_probs=215.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC--------CCcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeEEeeeecC
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR--------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKVISSCSNE 595 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 595 (824)
.++|++.+.||+|+||.||+|++. ++..||||+++.... ...+.+.+|+++++.+ +||||+++++++.++
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 468899999999999999999852 356799999875532 3456788999999999 899999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSN---------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL 660 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill 660 (824)
+..++||||+++|+|.+++.... ..+++.+++.++.||+.||+||| +.+|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence 99999999999999999998653 24789999999999999999999 9999999999999999
Q ss_pred CCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchh
Q 040845 661 DDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTL 739 (824)
Q Consensus 661 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~ 739 (824)
+.++.+||+|||+++...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+ .
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~--~ 314 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE--L 314 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--H
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH--H
Confidence 9999999999999987654443333444567889999999998899999999999999999999 999987632211 1
Q ss_pred hhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 740 KHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
...+.... ....+..++..+.+++.+||+.||++|||+.|++++|+++.+..
T Consensus 315 ~~~~~~~~------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~ 366 (370)
T 2psq_A 315 FKLLKEGH------------------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLT 366 (370)
T ss_dssp HHHHHTTC------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 11111100 01112345677999999999999999999999999999987654
No 48
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.7e-42 Score=365.66 Aligned_cols=251 Identities=27% Similarity=0.361 Sum_probs=210.7
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||+||+|.. .+++.||||++........+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 46799999999999999999985 46899999999877666677889999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
+++|+|.+++... .+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 99 ~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-- 171 (297)
T 3fxz_A 99 LAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-- 171 (297)
T ss_dssp CTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--
T ss_pred CCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--
Confidence 9999999999875 4889999999999999999999 89999999999999999999999999999987643322
Q ss_pred ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchh
Q 040845 685 TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQED 764 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (824)
......||+.|+|||.+.+..++.++||||+||++|||++|+.||........ .........+
T Consensus 172 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~---------------- 234 (297)
T 3fxz_A 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRA-LYLIATNGTP---------------- 234 (297)
T ss_dssp CBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHHCSC----------------
T ss_pred ccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCCC----------------
Confidence 23345699999999999999999999999999999999999999975321111 1111110000
Q ss_pred hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 765 IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 765 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+..++..+.+++.+||+.||++|||++|++++
T Consensus 235 -~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 270 (297)
T 3fxz_A 235 -ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270 (297)
T ss_dssp -CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -CCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 011123456778999999999999999999999875
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.2e-42 Score=395.31 Aligned_cols=412 Identities=18% Similarity=0.181 Sum_probs=321.0
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccE
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEV 98 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 98 (824)
.....+++++++|+++ .+|..+. ++|++|+|++|++++..|.+|.++++|++|+|++|+++++++... .++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF-LFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT-TTCTTCCE
T ss_pred ccCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh-CCCCCCCE
Confidence 3445589999999999 4776664 899999999999998878899999999999999999998865533 46999999
Q ss_pred EEccCCeeeeecCccccCCCCCceEeccCcccccc-CCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCC--cE
Q 040845 99 LYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGF-IPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSL--TH 175 (824)
Q Consensus 99 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L--~~ 175 (824)
|+|++|+|+ .+|.. .+++|++|+|++|++++. .|..|+++++|++|++++|+++... +..+++| ++
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~--------~~~l~~L~L~~ 173 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--------LLPVAHLHLSC 173 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT--------TGGGTTSCEEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc--------hhhhhhceeeE
Confidence 999999999 45555 899999999999999975 3689999999999999999998632 3444555 99
Q ss_pred EECcCCCC--CccCCccccccccccccEEEeecCcceecCCc-cCCCCCCCCEEEecCC---------------------
Q 040845 176 ISLSNNPL--DGILPRTYVGNLSHSLKNFYMYNCNVSGGIPE-EITNLTDLTTIVLGGN--------------------- 231 (824)
Q Consensus 176 L~Ls~n~l--~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n--------------------- 231 (824)
|++++|.+ .+..+..+.. +......+++++|.+.+.++. .+..+++|+.|++++|
T Consensus 174 L~L~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEE-CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEeecccccccccCcccccc-cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 99999999 7777666543 111222445555555543332 2334455555555554
Q ss_pred -------ccCCc----cchhhcCCCCCCEEEcccccCcccCCccc-----ccc--------------------------C
Q 040845 232 -------KLNGS----IPITLGKLQKLQDVDLEYNQLEGSIPDSI-----CLS--------------------------V 269 (824)
Q Consensus 232 -------~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~--------------------------~ 269 (824)
.+.+. .+.. ...++|++|++++|.+++.+|..+ ..+ .
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred EEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence 33321 1111 123589999999999987777665 222 3
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcCCCCCCC-CCCcccccccccccccccccccCc--CCccccccccchhhh
Q 040845 270 ELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTS-IPLNFWSLKDILDLNLSSNCFSGP--LPLEIRNLKALIEID 346 (824)
Q Consensus 270 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~ 346 (824)
+|+.|++++|.+.... ....+++|++|++++|.++. +|..+..+++|+.|++++|++++. .|..+.++++|+.|+
T Consensus 332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 4677777777765321 12688999999999999997 677889999999999999999963 356789999999999
Q ss_pred cccccccc-cCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCccc
Q 040845 347 FSMNNFSG-IIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 347 l~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 425 (824)
+++|++++ ..+..+..+++|+.|++++|++++..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 99999998 4445688999999999999999877766554 79999999999998 88888889999999999999999
Q ss_pred CCCCC-CCCccccccccccCCccccCCC
Q 040845 426 GEIPR-GGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 426 ~~~p~-~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
..++. ...+..+..+.+.+||+.|+|+
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 65554 4567788889999999999875
No 50
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=1.4e-42 Score=368.33 Aligned_cols=262 Identities=29% Similarity=0.419 Sum_probs=204.9
Q ss_pred hhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
...+|++.+.||+|+||+||+|++. |+.||||++.... ....+.+.+|++++++++||||+++++++.+....++||
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 3568999999999999999999885 8999999986543 233467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 603 EYMPHGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAP--VIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+|||+++...
T Consensus 114 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~ 190 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190 (309)
T ss_dssp ECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred ecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence 9999999999998654 23899999999999999999999 888 9999999999999999999999999997543
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.. ........||+.|+|||.+.+..++.++||||+||++|||++|+.||......+ ....+....
T Consensus 191 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~--~~~~~~~~~----------- 255 (309)
T 3p86_A 191 ST--FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQ--VVAAVGFKC----------- 255 (309)
T ss_dssp -------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHH--HHHHHHHSC-----------
T ss_pred cc--ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHhcC-----------
Confidence 22 122334568999999999999999999999999999999999999997632211 111110000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.....+..++..+.+++.+||+.||++|||++|+++.|+.+.++...
T Consensus 256 ------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p 302 (309)
T 3p86_A 256 ------KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVP 302 (309)
T ss_dssp ------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC----
T ss_pred ------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCC
Confidence 00011224566789999999999999999999999999998765544
No 51
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=4.1e-43 Score=383.40 Aligned_cols=260 Identities=30% Similarity=0.452 Sum_probs=214.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|.+.+.||+|+||.||+|++. +++.||||+++.... ...+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 467889999999999999999986 689999999875432 334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++|+|.+++...+..+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++........
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~ 269 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYA 269 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEE
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCcee
Confidence 99999999999876667899999999999999999999 999999999999999999999999999999865332211
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.......+++.|+|||.+.++.++.++|||||||++|||+| |..||...... ....++...
T Consensus 270 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~~---------------- 331 (377)
T 3cbl_A 270 ASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEKG---------------- 331 (377)
T ss_dssp CCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHTT----------------
T ss_pred ecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcC----------------
Confidence 12222345778999999988889999999999999999999 99998763221 111111110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
.+...+..++..+.++|.+||+.||++|||++++++.|+++.+.
T Consensus 332 --~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 332 --GRLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence 01112234677899999999999999999999999999998754
No 52
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.2e-42 Score=369.73 Aligned_cols=263 Identities=27% Similarity=0.442 Sum_probs=213.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC----CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR----DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|++. .+..||||+++... ....+.+.+|+.+++.++||||+++++++.+....++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 367888999999999999999874 35569999997543 3345678899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence 99999999999999877668999999999999999999999 999999999999999999999999999999876543
Q ss_pred CCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 681 DQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 681 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... .......+|+.|+|||.+.+..++.++||||||+++|||++ |..||......+ ....+....
T Consensus 205 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~~~----------- 271 (325)
T 3kul_A 205 PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRD--VISSVEEGY----------- 271 (325)
T ss_dssp --CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH--HHHHHHTTC-----------
T ss_pred ccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHHcCC-----------
Confidence 222 22333456788999999988899999999999999999999 999987632211 111111000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
....+..++..+.+++.+||..||++|||+.|+++.|+++.++...
T Consensus 272 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~ 317 (325)
T 3kul_A 272 -------RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPES 317 (325)
T ss_dssp -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC-
T ss_pred -------CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCccc
Confidence 0111234567799999999999999999999999999999875443
No 53
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=4.7e-41 Score=357.16 Aligned_cols=281 Identities=31% Similarity=0.489 Sum_probs=226.9
Q ss_pred cccccHHHHHHhhccCCCC------ceeeeccceEEEEEEECCCcEEEEEEeeccc----cchhhhHHHHHHHHhcCCCC
Q 040845 514 WRRFSYLELFQATDKFSEN------NLIGRGGFGSVYKARIRDGMEVAVKVFNLQC----GRAFKSFDVECAMMKSIRHR 583 (824)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~ 583 (824)
...|++.++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|+.+++.++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4578899999999998877 8999999999999987 48999999986432 23456788999999999999
Q ss_pred cceeEEeeeecCCeeEEEEeccCCCCHHHHhhhC--CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC
Q 040845 584 NLVKVISSCSNEEFKALVLEYMPHGSLEKYLHSS--NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD 661 (824)
Q Consensus 584 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~ 661 (824)
||+++++++.+.+..++||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~ 167 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLD 167 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEc
Confidence 9999999999999999999999999999998743 246899999999999999999999 89999999999999999
Q ss_pred CCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhh
Q 040845 662 DNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKH 741 (824)
Q Consensus 662 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~ 741 (824)
.++.+||+|||++................||+.|+|||.+.+ .++.++||||||+++|||++|..||....... ....
T Consensus 168 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-~~~~ 245 (307)
T 2nru_A 168 EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQ-LLLD 245 (307)
T ss_dssp TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSS-BTTH
T ss_pred CCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchH-HHHH
Confidence 999999999999987654333333344568999999998765 58999999999999999999999997643332 1222
Q ss_pred hhhhhCC--CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 742 WVNDCLP--ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 742 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
+...... ....+.++..... .+..++..+.+++.+||+.||++|||+.|++++|+++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 246 IKEEIEDEEKTIEDYIDKKMND-------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHTTSCCHHHHSCSSCSC-------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHhhhhhhhhhhhccccccc-------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 2221111 1111222222111 123567789999999999999999999999999998754
No 54
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.8e-42 Score=359.08 Aligned_cols=258 Identities=27% Similarity=0.423 Sum_probs=214.7
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|++.+++.||+|++.... ...+.+.+|++++++++||||+++++++.++...++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 36789999999999999999999889999999997543 34567899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMT 685 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~ 685 (824)
++++|.+++......+++..++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++....... ...
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~ 163 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTS 163 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHS
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc-ccc
Confidence 999999999877767999999999999999999999 9999999999999999999999999999998653221 122
Q ss_pred cccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchh
Q 040845 686 QTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQED 764 (824)
Q Consensus 686 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (824)
.....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+....
T Consensus 164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~--~~~~~~~~~----------------- 224 (269)
T 4hcu_A 164 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGF----------------- 224 (269)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTC-----------------
T ss_pred ccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHH--HHHHHhcCc-----------------
Confidence 233456788999999988899999999999999999999 899987632211 111111000
Q ss_pred hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 765 IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 765 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||+.||++|||++|++++|+++.++
T Consensus 225 -~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 225 -RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp -CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -cCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 0011122456689999999999999999999999999998764
No 55
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.6e-42 Score=366.26 Aligned_cols=275 Identities=25% Similarity=0.441 Sum_probs=212.6
Q ss_pred hccCCCCceeeeccceEEEEEEE-----CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeec--CCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-----RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSN--EEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~ 598 (824)
.++|++.+.||+|+||+||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46789999999999999999985 2589999999976655566788999999999999999999999854 4568
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||+++|+|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 9999999999999999887667999999999999999999999 9999999999999999999999999999998765
Q ss_pred CCCCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc--hhhc
Q 040845 679 GEDQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST--MEVV 755 (824)
Q Consensus 679 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 755 (824)
..... .......++..|+|||.+.+..++.++||||||+++|||+||..||...... ...+......... ....
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQMIVFHLI 242 (295)
T ss_dssp ----------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH---HHHHHCTTCCTHHHHHHHH
T ss_pred CCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH---HHhhhcCccccchhHHHHH
Confidence 43222 2223345778899999999889999999999999999999999998653211 0000000000000 0000
Q ss_pred cccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 756 DANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
+. . ....+...+..++..+.+++.+||+.||++|||++|+++.|+++++.+
T Consensus 243 ~~-~--~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 243 EL-L--KNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HH-H--HTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HH-H--hccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 00 0 001111223456788999999999999999999999999999998765
No 56
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.2e-41 Score=363.29 Aligned_cols=261 Identities=25% Similarity=0.325 Sum_probs=215.7
Q ss_pred cccHHHHHHhhcc----------CCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc
Q 040845 516 RFSYLELFQATDK----------FSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN 584 (824)
Q Consensus 516 ~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n 584 (824)
.++++++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n 103 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence 4677777777654 677789999999999999876 69999999998766666778899999999999999
Q ss_pred ceeEEeeeecCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC
Q 040845 585 LVKVISSCSNEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM 664 (824)
Q Consensus 585 iv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~ 664 (824)
|+++++++...+..++||||+++++|.+++... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~ 178 (321)
T 2c30_A 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDG 178 (321)
T ss_dssp BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC
T ss_pred cceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC
Confidence 999999999999999999999999999998754 5899999999999999999999 89999999999999999999
Q ss_pred cEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhh
Q 040845 665 VAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVN 744 (824)
Q Consensus 665 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~ 744 (824)
.+||+|||++........ ......||+.|+|||++.+..++.++||||||+++|||++|+.||..... ......+.
T Consensus 179 ~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~--~~~~~~~~ 254 (321)
T 2c30_A 179 RVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP--VQAMKRLR 254 (321)
T ss_dssp CEEECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHH
T ss_pred cEEEeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHh
Confidence 999999999987643221 22345699999999999999999999999999999999999999975321 11111111
Q ss_pred hhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 745 DCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+ +. ......++..+.+++.+||+.||++|||+.|++++
T Consensus 255 ~~~~--------~~--------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 255 DSPP--------PK--------LKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp HSSC--------CC--------CTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cCCC--------CC--------cCccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 1100 00 01112345678999999999999999999999886
No 57
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=3e-42 Score=368.03 Aligned_cols=248 Identities=25% Similarity=0.326 Sum_probs=207.0
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||.||+|++ .+|+.||||++.... ....+.+.+|+++++.++||||+++++++..++..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 56899999999999999999987 569999999997553 234567889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||+++|+|.+++...+ .+++.++..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 94 e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 168 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG- 168 (328)
T ss_dssp CCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC-
T ss_pred ECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC-
Confidence 9999999999997765 6899999999999999999999 9999999999999999999999999999998764332
Q ss_pred ccccccccccccccCccCcCCCCCC-ccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVS-TNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~-~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
......||+.|+|||++.+..++ .++||||+||++|||++|+.||.+....+. .........
T Consensus 169 --~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~i~~~~~-------------- 231 (328)
T 3fe3_A 169 --KLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKEL-RERVLRGKY-------------- 231 (328)
T ss_dssp --GGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHCCC--------------
T ss_pred --ccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHH-HHHHHhCCC--------------
Confidence 23445799999999999887764 899999999999999999999976321110 011100000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||..||++|||++|++++
T Consensus 232 ------~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 232 ------RIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp ------CCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTC
T ss_pred ------CCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0112345678899999999999999999999876
No 58
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=3.5e-42 Score=358.20 Aligned_cols=257 Identities=26% Similarity=0.425 Sum_probs=213.9
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|+++++..||||+++... ...+.+.+|++++++++||||+++++++.++...++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 46799999999999999999999988899999997543 34567899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMT 685 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~ 685 (824)
++++|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+....... ...
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~ 161 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-YVS 161 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-EEE
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh-hhc
Confidence 999999999877667999999999999999999999 9999999999999999999999999999998764332 222
Q ss_pred cccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchh
Q 040845 686 QTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQED 764 (824)
Q Consensus 686 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (824)
.....+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||......+. ....... .
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~-~~~~~~~-~----------------- 222 (268)
T 3sxs_A 162 SVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEV-VLKVSQG-H----------------- 222 (268)
T ss_dssp CCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-HHHHHTT-C-----------------
T ss_pred ccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHH-HHHHHcC-C-----------------
Confidence 334456788999999988889999999999999999999 9999875322111 1111000 0
Q ss_pred hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 765 IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 765 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
....+..++..+.+++.+||+.||++|||+.|++++|+++++
T Consensus 223 -~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (268)
T 3sxs_A 223 -RLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLRE 264 (268)
T ss_dssp -CCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC
T ss_pred -CCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhh
Confidence 000112235568999999999999999999999999988753
No 59
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.2e-42 Score=368.88 Aligned_cols=252 Identities=25% Similarity=0.352 Sum_probs=200.1
Q ss_pred hhccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 457899999999999999999986 469999999987553 234567889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||+++|+|.+++...+ .+++.++..++.|++.|++||| +.+|+||||||+||++++++.+||+|||+|........
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~ 163 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKD 163 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCCC
Confidence 9999999999997665 6899999999999999999999 89999999999999999999999999999886543222
Q ss_pred ccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.......||+.|+|||++.+..+ +.++||||+||++|||++|..||......+ ..........
T Consensus 164 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~-------------- 227 (347)
T 3zgw_A 164 -YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMA-LYKKIMRGKY-------------- 227 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC--------------
T ss_pred -ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCC--------------
Confidence 22334568999999999988775 899999999999999999999997522111 0111111100
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
..+..++..+.+++.+||+.||++|||++|++++-
T Consensus 228 ------~~p~~~s~~~~~li~~~L~~dP~~Rps~~eil~hp 262 (347)
T 3zgw_A 228 ------DVPKWLSPSSILLLQQMLQVDPKKRISMKNLLNHP 262 (347)
T ss_dssp ------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHTCH
T ss_pred ------CCCCCCCHHHHHHHHHHcccCHhHCcCHHHHhcCc
Confidence 01122456688999999999999999999999874
No 60
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=1.6e-41 Score=360.01 Aligned_cols=264 Identities=27% Similarity=0.443 Sum_probs=208.1
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|.+.+.||+|+||.||+|++. ..+|+|+++... ....+.+.+|++++++++||||+++++++.. +..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEEe
Confidence 468999999999999999999865 469999886543 2345678899999999999999999998754 55789999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|.........
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~ 188 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceeccccccc
Confidence 99999999999877778999999999999999999999 899999999999999999999999999999865433333
Q ss_pred cccccccccccccCccCcC---CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 684 MTQTQTLATIGYMAPEYGR---EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
.......||+.|+|||.+. +..++.++|||||||++|||++|+.||......+.. ...+....... ..
T Consensus 189 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~-~~~~~~~~~~~-------~~- 259 (307)
T 3lb7_A 189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI-IFMVGRGYASP-------DL- 259 (307)
T ss_dssp -----CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH-HHHHHHTCCCC-------CS-
T ss_pred ccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHH-HHHHhcCCCCc-------ch-
Confidence 3334456999999999875 567899999999999999999999999764322211 11111111000 00
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
......++..+.+++.+||+.||++|||+.|++++|+.+..++.
T Consensus 260 ------~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 260 ------SKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLP 303 (307)
T ss_dssp ------TTSCSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCC
T ss_pred ------hhhhcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhcc
Confidence 00112456779999999999999999999999999999987664
No 61
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=4.3e-42 Score=373.81 Aligned_cols=271 Identities=24% Similarity=0.378 Sum_probs=218.7
Q ss_pred ccHHHHHHhhccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeE
Q 040845 517 FSYLELFQATDKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKV 588 (824)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l 588 (824)
+....+....++|++.+.||+|+||.||+|++. +++.||||+++.... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 344555566789999999999999999999742 368999999975432 3346789999999999 78999999
Q ss_pred EeeeecCC-eeEEEEeccCCCCHHHHhhhCCC------------------------------------------------
Q 040845 589 ISSCSNEE-FKALVLEYMPHGSLEKYLHSSNY------------------------------------------------ 619 (824)
Q Consensus 589 ~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~------------------------------------------------ 619 (824)
++++.+.+ ..++||||+++|+|.+++.....
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 99987754 48999999999999999976532
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 620 -----------------SLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 620 -----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
.+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++........
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 1889999999999999999999 89999999999999999999999999999987654444
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
........+|+.|+|||++.+..++.++|||||||++|||+| |+.||......+...... .....
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~-~~~~~------------- 314 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTR------------- 314 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHH-HHTCC-------------
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHH-HcCCC-------------
Confidence 444455678999999999998899999999999999999998 999987643222211111 11000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
...+..++..+.+++.+||+.||++|||+.|++++|+++.++.
T Consensus 315 -----~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 315 -----MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp -----CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 0011234567899999999999999999999999999998654
No 62
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=6.3e-42 Score=372.74 Aligned_cols=260 Identities=25% Similarity=0.477 Sum_probs=202.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC----CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR----DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
..+|++.+.||+|+||.||+|++. ++..||||+++... ....+.+.+|+.++++++||||+++++++.+....++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357999999999999999999865 47789999987543 2345678999999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++......+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence 99999999999999887778999999999999999999999 899999999999999999999999999999876533
Q ss_pred CCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 681 DQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 681 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... .......+++.|+|||++.+..++.++||||||+++||+++ |+.||......+ ....+.. .
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~--~~~~i~~------------~ 266 (373)
T 2qol_A 201 PEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQD--VIKAVDE------------G 266 (373)
T ss_dssp -------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHH--HHHHHHT------------T
T ss_pred CccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHc------------C
Confidence 221 12223345788999999998899999999999999999998 999986532211 1111110 0
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
.+...+..++..+.+++.+||+.||++||++.|+++.|+++.+.
T Consensus 267 ------~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 267 ------YRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp ------EECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ------CCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 01111224567799999999999999999999999999998764
No 63
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=3.7e-41 Score=363.90 Aligned_cols=252 Identities=22% Similarity=0.328 Sum_probs=208.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc------hhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR------AFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||+|+++..... ..+.+.+|+.+++.++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999876 5899999999765322 346789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM----VAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~Dfg~a 674 (824)
++||||+++|+|.+++.... .+++.++..++.||+.||+||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 99999999999999997654 7899999999999999999999 89999999999999998777 7999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
....... ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+....+ ....+......
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~-~~~~i~~~~~~------ 236 (361)
T 2yab_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANITAVSYD------ 236 (361)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCCC------
T ss_pred eEcCCCC---ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhcCCC------
Confidence 8764332 2234569999999999998899999999999999999999999997632111 11111111000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.....+..++..+.+++.+||..||++|||+.|++++
T Consensus 237 ----------~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h 273 (361)
T 2yab_A 237 ----------FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (361)
T ss_dssp ----------CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ----------CCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0111223456778999999999999999999999864
No 64
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-41 Score=361.57 Aligned_cols=253 Identities=21% Similarity=0.309 Sum_probs=210.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||.||+|+.. +++.||+|.+... ....+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999876 5889999998644 34456788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC--CCcEEEeecccccccCCCCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD--NMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~Dfg~a~~~~~~~~ 682 (824)
+++|+|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++. ++.+||+|||++..+....
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~- 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD- 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence 9999999999877667999999999999999999999 999999999999999987 7899999999998764332
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
......||+.|+|||++.+..++.++||||+||++|||++|..||......+ ....+......
T Consensus 159 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~-------------- 221 (321)
T 1tki_A 159 --NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ-IIENIMNAEYT-------------- 221 (321)
T ss_dssp --EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHTCCC--------------
T ss_pred --ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHH-HHHHHHcCCCC--------------
Confidence 2234568999999999998889999999999999999999999997632211 11111111110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
........++.++.+++.+||..||++|||+.|++++=
T Consensus 222 --~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp 259 (321)
T 1tki_A 222 --FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHP 259 (321)
T ss_dssp --CCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred --CChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcCh
Confidence 01111234567799999999999999999999999864
No 65
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.3e-41 Score=357.45 Aligned_cols=270 Identities=23% Similarity=0.297 Sum_probs=208.3
Q ss_pred hhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||+||+|+..+|+.||+|++.... ....+.+.+|++++++++||||+++++++.++...++||
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 98 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVF 98 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEE
T ss_pred hHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEE
Confidence 357899999999999999999999889999999986543 223467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||++ ++|.+++......+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 99 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~- 173 (311)
T 3niz_A 99 EFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV- 173 (311)
T ss_dssp ECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC-
T ss_pred cCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc-
Confidence 9997 4899888877767999999999999999999999 9999999999999999999999999999998764322
Q ss_pred ccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc---chhhccc-
Q 040845 683 SMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS---TMEVVDA- 757 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 757 (824)
.......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+ ............. .....+.
T Consensus 174 -~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3niz_A 174 -RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSILGTPNPREWPQVQELP 251 (311)
T ss_dssp -C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred -ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHHCCCChHHhhhhhccc
Confidence 22334568999999998876 568999999999999999999999997643332 2222221111110 0000000
Q ss_pred -----ccc-CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 758 -----NLL-SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 758 -----~~~-~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
... ............++.++.+++.+||+.||++|||++|++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 301 (311)
T 3niz_A 252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNH 301 (311)
T ss_dssp HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 000 00000111122456778999999999999999999999874
No 66
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.2e-41 Score=362.37 Aligned_cols=249 Identities=22% Similarity=0.300 Sum_probs=207.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc---ccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ---CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||+|+++.. .....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 468999999999999999999875 5899999999754 233456788899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++|+|.+++...+ .+++.++..++.||+.||+||| +.+|+||||||+||+++.+|.+||+|||+++......
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 99999999999998655 6899999999999999999999 9999999999999999999999999999998543222
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ..........
T Consensus 160 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~-------------- 222 (337)
T 1o6l_A 160 --ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER-LFELILMEEI-------------- 222 (337)
T ss_dssp --CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC--------------
T ss_pred --CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHH-HHHHHHcCCC--------------
Confidence 12334569999999999999999999999999999999999999997532111 0111111000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRI-----NAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|| +++|+++|
T Consensus 223 ------~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h 261 (337)
T 1o6l_A 223 ------RFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261 (337)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred ------CCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence 01123466789999999999999999 89999876
No 67
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1.4e-41 Score=363.02 Aligned_cols=254 Identities=24% Similarity=0.354 Sum_probs=208.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 468999999999999999999876 689999999865432 334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..+......
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 999999999997654 6899999999999999999999 999999999999999999999999999999876543333
Q ss_pred cccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 684 MTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.......||+.|+|||++.+..+ +.++||||+||++|||++|+.||............|......
T Consensus 162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~-------------- 227 (323)
T 3tki_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY-------------- 227 (323)
T ss_dssp CCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTT--------------
T ss_pred cccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhccccc--------------
Confidence 33345679999999999887765 789999999999999999999997644333333333221110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
......++..+.+++.+||..||++|||+.|++++
T Consensus 228 ----~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 228 ----LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp ----STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred ----CCccccCCHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 00112345678899999999999999999999875
No 68
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=1.3e-41 Score=356.99 Aligned_cols=258 Identities=25% Similarity=0.443 Sum_probs=211.5
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|+++++..||||+++... ...+.+.+|++++++++||||+++++++.+....++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 56899999999999999999999988899999997543 33567889999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMT 685 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~ 685 (824)
++++|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++....... ...
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~ 177 (283)
T 3gen_A 102 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTS 177 (283)
T ss_dssp TTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HHS
T ss_pred CCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc-ccc
Confidence 999999999875567999999999999999999999 9999999999999999999999999999998654221 122
Q ss_pred cccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchh
Q 040845 686 QTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQED 764 (824)
Q Consensus 686 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (824)
.....+|+.|+|||.+.+..++.++||||+|+++|||+| |+.||......+ ........ .
T Consensus 178 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~-~~~~~~~~-~----------------- 238 (283)
T 3gen_A 178 SVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE-TAEHIAQG-L----------------- 238 (283)
T ss_dssp TTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH-HHHHHHTT-C-----------------
T ss_pred ccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH-HHHHHhcc-c-----------------
Confidence 233456788999999998889999999999999999998 999987632211 11111110 0
Q ss_pred hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 765 IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 765 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||+.||++|||++|++++|+++.+.
T Consensus 239 -~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 239 -RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp -CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -CCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 0001122356688999999999999999999999999998753
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.1e-41 Score=377.20 Aligned_cols=378 Identities=23% Similarity=0.248 Sum_probs=305.5
Q ss_pred ccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcc-cChhhhCcCCCceeeccCCccc
Q 040845 4 IINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGT-IPAAIFNVSTLKAFAVTNNSLS 82 (824)
Q Consensus 4 l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 82 (824)
..++.++.++. +. ++|++|+|++|+|++..|..|+++++|++|+|++|.+.+. .+.+|.++++|++|+|++|+++
T Consensus 17 c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 17 CINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp CCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 34566666554 32 7899999999999988899999999999999999999744 4678999999999999999998
Q ss_pred cccCccccCCCCCccEEEccCCeeeeecCcc--ccCCCCCceEeccCccccccCCcc-ccCCCCCCEEEccCCcCCCCcC
Q 040845 83 GCLSSITDVGLPNLEVLYLWGNNFSGTIPHF--IFNASKLSKLALEMNSFSGFIPST-FGNLRNLEWLTLYDNNLTSSTL 159 (824)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--l~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~ 159 (824)
+.++... .++++|++|+|++|++++..+.. +..+++|++|+|++|++++..|.. |.++++|++|++++|+++....
T Consensus 93 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 93 QLETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred ccChhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 8754433 36899999999999998755444 889999999999999999887776 8999999999999999987754
Q ss_pred cccccccCCCC--CCCcEEECcCCCCCccCCcccccc------ccccccEEEeecCcceecCCccCCCC---CCCCEEEe
Q 040845 160 DLSFLSSLSNC--KSLTHISLSNNPLDGILPRTYVGN------LSHSLKNFYMYNCNVSGGIPEEITNL---TDLTTIVL 228 (824)
Q Consensus 160 ~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~------l~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L 228 (824)
. .+..+ ++|+.|++++|.+.+..+..+... -..+|++|++++|++++..|..+..+ ++|+.|++
T Consensus 172 ~-----~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 172 E-----DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp T-----TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred h-----hhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 3 24443 799999999999988766543210 12579999999999998877766543 89999999
Q ss_pred cCCccCCccchhhcCCCCCCEEEcccccCcccCCccccc--cCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCC
Q 040845 229 GGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICL--SVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELT 306 (824)
Q Consensus 229 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 306 (824)
++|.+.+... ..+.+....+..+.. .++|+.|++++|++.+..+..|+.+++|++|+|++|+++
T Consensus 247 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 247 SNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp TTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc
Confidence 9998764311 122222222222222 357888888888888788888888888888888888888
Q ss_pred CCC-CcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCcccc
Q 040845 307 SIP-LNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFG 385 (824)
Q Consensus 307 ~lp-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 385 (824)
.++ ..+..+++|+.|++++|.+++..|..|.++++|+.|+|++|++++..|..|..+++|++|+|++|+|++..+..|.
T Consensus 313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 774 4577788888888888888877888899999999999999999988899999999999999999999987777889
Q ss_pred ccccccEEEccCcccCCCCc
Q 040845 386 DLISLKSLNLSYNNLSGTIP 405 (824)
Q Consensus 386 ~l~~L~~L~L~~N~l~~~~p 405 (824)
.+++|+.|++++|++++..|
T Consensus 393 ~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCTTCCEEECCSSCBCCCTT
T ss_pred cCCcccEEEccCCCcccCCC
Confidence 99999999999999997776
No 70
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-41 Score=370.42 Aligned_cols=264 Identities=27% Similarity=0.422 Sum_probs=217.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC--------CCcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeEEeeeecC
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR--------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKVISSCSNE 595 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 595 (824)
.++|.+.+.||+|+||.||+|++. ++..||||+++.... ...+.+.+|+++++++ +||||+++++++.++
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 468899999999999999999852 246799999875532 3446788999999999 899999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSN---------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL 660 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill 660 (824)
+..++||||+++|+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||++
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEE
Confidence 99999999999999999998654 35899999999999999999999 8999999999999999
Q ss_pred CCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchh
Q 040845 661 DDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTL 739 (824)
Q Consensus 661 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~ 739 (824)
+.++.+||+|||+|+...............+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ..
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~--~~ 302 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE--EL 302 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HH
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH--HH
Confidence 9999999999999987654443334445567889999999999999999999999999999999 99998753211 11
Q ss_pred hhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 040845 740 KHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRN 812 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 812 (824)
...+.... ....+..++..+.+++.+||+.||++|||++|++++|+++......+
T Consensus 303 ~~~~~~~~------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~ 357 (382)
T 3tt0_A 303 FKLLKEGH------------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQ 357 (382)
T ss_dssp HHHHHTTC------------------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHcCC------------------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcC
Confidence 11111110 00111235667999999999999999999999999999998755443
No 71
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1e-41 Score=368.52 Aligned_cols=267 Identities=27% Similarity=0.419 Sum_probs=214.5
Q ss_pred HHhhccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecC
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNE 595 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 595 (824)
....++|++.+.||+|+||.||+|++. +++.||||+++.... ...+.+.+|+.++++++||||+++++++.+.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 334688999999999999999999874 348899999875532 3456789999999999999999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecC
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSN-----------------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCD 652 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~D 652 (824)
+..++||||+++|+|.+++.... ..+++.+++.++.|+++||+||| +.+|+|||
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~D 199 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRD 199 (343)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred CceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCC
Confidence 99999999999999999997642 46899999999999999999999 99999999
Q ss_pred CCCCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcc
Q 040845 653 LKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDE 731 (824)
Q Consensus 653 lk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~ 731 (824)
|||+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||++ |..||..
T Consensus 200 lkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 200 LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp CSGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred CCcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCC
Confidence 999999999999999999999987644333333344568899999999988889999999999999999999 9999875
Q ss_pred cccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 732 LFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.... .....+... .. ...+..++..+.+++.+||+.||++|||+.|++++|+++.+.+..
T Consensus 280 ~~~~--~~~~~~~~~-----------~~-------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~ 339 (343)
T 1luf_A 280 MAHE--EVIYYVRDG-----------NI-------LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEG 339 (343)
T ss_dssp SCHH--HHHHHHHTT-----------CC-------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC----
T ss_pred CChH--HHHHHHhCC-----------Cc-------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhh
Confidence 3221 111111100 00 001224567799999999999999999999999999998765544
Q ss_pred c
Q 040845 812 N 812 (824)
Q Consensus 812 ~ 812 (824)
.
T Consensus 340 ~ 340 (343)
T 1luf_A 340 T 340 (343)
T ss_dssp -
T ss_pred h
Confidence 3
No 72
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1.8e-41 Score=363.32 Aligned_cols=259 Identities=24% Similarity=0.414 Sum_probs=206.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCc----EEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGM----EVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
.++|++.+.||+|+||+||+|++. +++ +||+|.+.... ....+.+.+|+.++++++||||+++++++.+.. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 367899999999999999999864 344 35788775432 344577899999999999999999999998765 67
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~ 679 (824)
+|+||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 169 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence 999999999999999887778999999999999999999999 89999999999999999999999999999988755
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
...........+|+.|+|||.+.+..++.++|||||||++|||+| |+.||......+ ....+....
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~--~~~~~~~~~----------- 236 (327)
T 3poz_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILEKGE----------- 236 (327)
T ss_dssp TCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTC-----------
T ss_pred CcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH--HHHHHHcCC-----------
Confidence 544444445567889999999999999999999999999999999 999997633221 112111110
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||+.||++|||+.|++++|+++.+.
T Consensus 237 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 237 -------RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp -------CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred -------CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 0111223566789999999999999999999999999998754
No 73
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.3e-41 Score=354.56 Aligned_cols=261 Identities=24% Similarity=0.431 Sum_probs=208.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc---chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG---RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 467999999999999999999865 589999999865432 3346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++...+ .+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 99999999999998765 7899999999999999999999 9999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
........||+.|+|||.+.+..++.++||||+|+++|||++|+.||............ .....
T Consensus 166 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~-~~~~~-------------- 229 (294)
T 4eqm_A 166 -LTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKH-IQDSV-------------- 229 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHH-HSSCC--------------
T ss_pred -ccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH-hhccC--------------
Confidence 12233456899999999999989999999999999999999999999763221111111 00000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCC-CHHHHHHHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRI-NAKEIVAKLLKIRD 807 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-t~~evl~~L~~~~~ 807 (824)
.......+..++..+.+++.+||..||++|| +++++.+.|+++..
T Consensus 230 -~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~ 275 (294)
T 4eqm_A 230 -PNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLH 275 (294)
T ss_dssp -CCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSS
T ss_pred -CCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHh
Confidence 0001111234567799999999999999999 99999999887643
No 74
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=1.2e-40 Score=352.92 Aligned_cols=265 Identities=26% Similarity=0.392 Sum_probs=205.6
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhc--CCCCcceeEEeeeec----CCeeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKS--IRHRNLVKVISSCSN----EEFKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~----~~~~~ 599 (824)
.++|++.+.||+|+||+||+|++ +++.||||++... ....+..|.+++.. ++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 47899999999999999999998 4899999998643 33455566666666 799999999998644 35688
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY-----SAPVIHCDLKPSNVLLDDNMVAHLSDFGIA 674 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a 674 (824)
+||||+++|+|.++++.. .+++..++.++.|++.|++|||+.. +.+|+||||||+||+++.++.+||+|||+|
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 6899999999999999999999322 579999999999999999999999999999
Q ss_pred cccCCCCCcc--ccccccccccccCccCcCCC------CCCccchHHHHHHHHHHHHhC----------CCCCcccccCc
Q 040845 675 KLLTGEDQSM--TQTQTLATIGYMAPEYGREG------QVSTNGDVYSFGIMLMETFTR----------KKPTDELFNGE 736 (824)
Q Consensus 675 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslG~~l~el~tg----------~~p~~~~~~~~ 736 (824)
.......... ......||+.|+|||.+.+. .++.++|||||||++|||+|| +.||.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~ 240 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND 240 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred eecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC
Confidence 8664433221 12334699999999998876 455799999999999999999 77776644433
Q ss_pred chhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHH
Q 040845 737 MTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKI 805 (824)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 805 (824)
.....+........ .............++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 241 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 241 PSFEDMRKVVCVDQ---------QRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp CCHHHHHHHHTTSC---------CCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cchhhhhHHHhccC---------CCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 33332222111100 0000011112335678899999999999999999999999999876
No 75
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-40 Score=357.11 Aligned_cols=269 Identities=27% Similarity=0.402 Sum_probs=207.0
Q ss_pred HHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcC--CCCcceeEEeeeecC----C
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSI--RHRNLVKVISSCSNE----E 596 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~----~ 596 (824)
....++|++.+.||+|+||.||+|++. ++.||||++... ....+..|.+++... +||||+++++++... .
T Consensus 33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~ 108 (337)
T 3mdy_A 33 RTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT 108 (337)
T ss_dssp TTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred cccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence 444578999999999999999999987 899999998643 233445555665554 899999999999876 7
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC--------CeEecCCCCCCeeeCCCCcEEE
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSA--------PVIHCDLKPSNVLLDDNMVAHL 668 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~--------~ivH~Dlk~~Nill~~~~~~kl 668 (824)
..++||||+++|+|.+++... .+++.+++.++.|++.|++||| +. +|+||||||+||+++.++.+||
T Consensus 109 ~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl 183 (337)
T 3mdy_A 109 QLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCI 183 (337)
T ss_dssp EEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSCEEE
T ss_pred ceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCCEEE
Confidence 889999999999999999765 5899999999999999999999 77 9999999999999999999999
Q ss_pred eecccccccCCCCCcc--ccccccccccccCccCcCCCCCCcc------chHHHHHHHHHHHHhCC----------CCCc
Q 040845 669 SDFGIAKLLTGEDQSM--TQTQTLATIGYMAPEYGREGQVSTN------GDVYSFGIMLMETFTRK----------KPTD 730 (824)
Q Consensus 669 ~Dfg~a~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~------~DvwslG~~l~el~tg~----------~p~~ 730 (824)
+|||++..+....... ......||+.|+|||++.+..++.+ +|||||||++|||+||. .||.
T Consensus 184 ~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~ 263 (337)
T 3mdy_A 184 ADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYH 263 (337)
T ss_dssp CCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT
T ss_pred EeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHh
Confidence 9999998764333221 1224569999999999987766655 99999999999999994 4444
Q ss_pred ccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 731 ELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
...........+... ..................++..+.+++.+||+.||++|||+.|++++|+++.++.
T Consensus 264 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~ 333 (337)
T 3mdy_A 264 DLVPSDPSYEDMREI---------VCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQ 333 (337)
T ss_dssp TTSCSSCCHHHHHHH---------HTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred hhcCCCCchhhhHHH---------HhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence 432222222111111 1111111111122233478889999999999999999999999999999998764
No 76
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=3.5e-41 Score=359.25 Aligned_cols=264 Identities=23% Similarity=0.380 Sum_probs=217.6
Q ss_pred hccCCCCceeeeccceEEEEEEE------CCCcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeEEeeeecCCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI------RDGMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 597 (824)
.++|++.+.||+|+||.||+|++ .+++.||||+++.... ...+.+.+|+.+++++ +||||+++++++.+++.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 46899999999999999999985 2468999999975533 3457788999999999 99999999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCCC-----------------CCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 040845 598 KALVLEYMPHGSLEKYLHSSNY-----------------SLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL 660 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill 660 (824)
.++||||+++|+|.+++..... .+++.+++.++.|+++||+||| +.+|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence 9999999999999999986542 4899999999999999999999 8999999999999999
Q ss_pred CCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchh
Q 040845 661 DDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTL 739 (824)
Q Consensus 661 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~ 739 (824)
+.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |+.||........ .
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~ 257 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSK-F 257 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHH-H
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhH-H
Confidence 9999999999999987755444333344567889999999988899999999999999999999 9999876432211 1
Q ss_pred hhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 740 KHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
...+..... ...+..++..+.+++.+||+.||++|||+.|++++|+++.++...
T Consensus 258 ~~~~~~~~~------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 311 (313)
T 1t46_A 258 YKMIKEGFR------------------MLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311 (313)
T ss_dssp HHHHHHTCC------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC
T ss_pred HHHhccCCC------------------CCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhc
Confidence 111111110 001123456789999999999999999999999999998876543
No 77
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-41 Score=365.33 Aligned_cols=266 Identities=23% Similarity=0.351 Sum_probs=213.1
Q ss_pred hhccCCCCceeeeccceEEEEEEE------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCC
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARI------RDGMEVAVKVFNLQC-GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEE 596 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 596 (824)
..++|++.+.||+|+||.||+|++ .++..||||++.... ....+.+.+|+.+++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 357899999999999999999986 235689999987542 33457789999999999 8999999999999999
Q ss_pred eeEEEEeccCCCCHHHHhhhCCC----------------------CCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCC
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNY----------------------SLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLK 654 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 654 (824)
..++||||+++|+|.+++..... .+++.+++.++.|++.||+||| +.+|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99999999999999999986542 3789999999999999999999 9999999999
Q ss_pred CCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccc
Q 040845 655 PSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELF 733 (824)
Q Consensus 655 ~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~ 733 (824)
|+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |..||....
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 9999999999999999999987654444334445567889999999988899999999999999999998 999987643
Q ss_pred cCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 040845 734 NGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRN 812 (824)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 812 (824)
... .....+..... ...+..++..+.+++.+||..||++|||+.|++++|+.+.+...+.
T Consensus 280 ~~~-~~~~~~~~~~~------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 280 VDA-NFYKLIQNGFK------------------MDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp CSH-HHHHHHHTTCC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred cHH-HHHHHHhcCCC------------------CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 221 11121111110 0111234667899999999999999999999999999987765543
No 78
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=5.8e-42 Score=378.32 Aligned_cols=262 Identities=19% Similarity=0.240 Sum_probs=210.5
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecC
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE 595 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 595 (824)
.++....++|++.+.||+|+||+||+|+.+. ++.||||+++... ....+.+.+|+.+++.++||||+++++++.++
T Consensus 67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~ 146 (437)
T 4aw2_A 67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDD 146 (437)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeC
Confidence 3444556899999999999999999998764 7899999997532 23345588999999999999999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
+..++||||+++|+|.+++......+++..+..++.|++.||+||| +.+|+||||||+|||++.++.+||+|||+|+
T Consensus 147 ~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~ 223 (437)
T 4aw2_A 147 NNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCL 223 (437)
T ss_dssp SEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhh
Confidence 9999999999999999999876667999999999999999999999 9999999999999999999999999999998
Q ss_pred ccCCCCCccccccccccccccCccCcC-----CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGR-----EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS 750 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 750 (824)
....... .......||+.|+|||++. .+.++.++||||+||++|||++|+.||......+ ...........
T Consensus 224 ~~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~~~~-- 299 (437)
T 4aw2_A 224 KLMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE-TYGKIMNHKER-- 299 (437)
T ss_dssp ECCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHHHH--
T ss_pred hcccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhH-HHHhhhhcccc--
Confidence 7643322 2233457999999999986 5578999999999999999999999997632111 11111110000
Q ss_pred chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCC--CCCHHHHHHH
Q 040845 751 TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQ--RINAKEIVAK 801 (824)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rpt~~evl~~ 801 (824)
...+. ....++..+.+++.+|+..+|++ ||+++|+++|
T Consensus 300 ---~~~p~----------~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~H 339 (437)
T 4aw2_A 300 ---FQFPT----------QVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKH 339 (437)
T ss_dssp ---CCCCS----------SCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTS
T ss_pred ---ccCCc----------ccccCCHHHHHHHHHHhcccccccCCCCHHHHhCC
Confidence 00000 00124567899999999998888 9999999875
No 79
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=5.7e-41 Score=374.83 Aligned_cols=252 Identities=31% Similarity=0.455 Sum_probs=210.1
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCC-eeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE-FKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~ 604 (824)
.++|++.+.||+|+||.||+|.+. |+.||||+++.. ...+.+.+|+.++++++||||+++++++.+.. ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSC--TTSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCc--hHHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 467889999999999999999987 889999998754 35678999999999999999999999987655 78999999
Q ss_pred cCCCCHHHHhhhCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 605 MPHGSLEKYLHSSNY-SLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
+++|+|.+++...+. .+++..++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~--- 342 (450)
T 1k9a_A 269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 342 (450)
T ss_dssp CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc---
Confidence 999999999987653 4689999999999999999999 999999999999999999999999999999854321
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.....+++.|+|||.+.+..++.++|||||||++|||+| |+.||......+. ...+..
T Consensus 343 --~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~--~~~i~~----------------- 401 (450)
T 1k9a_A 343 --QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDV--VPRVEK----------------- 401 (450)
T ss_dssp ------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTH--HHHHHT-----------------
T ss_pred --ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHH--HHHHHc-----------------
Confidence 122357889999999999999999999999999999999 9999876432211 111110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
..+...+..|+..+.++|.+||+.||++|||+.|+++.|+++...
T Consensus 402 -~~~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 402 -GYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp -TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred -CCCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 011122345678899999999999999999999999999998764
No 80
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-41 Score=360.32 Aligned_cols=248 Identities=25% Similarity=0.387 Sum_probs=205.0
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|.+.+.||+|+||.||+|++ .+++.||||++.... ......+.+|+.+++.++||||+++++++..+...++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 46899999999999999999986 468999999987542 23345788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+ +|+|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||++++++.+||+|||++.......
T Consensus 88 ~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~ 162 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred EECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence 9999 789999987655 6899999999999999999999 8999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
......||+.|+|||.+.+..+ +.++||||+||++|||++|+.||......... ..+...
T Consensus 163 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~--------------~~i~~~-- 223 (336)
T 3h4j_B 163 ---FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF--------------KKVNSC-- 223 (336)
T ss_dssp ---TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB--------------CCCCSS--
T ss_pred ---ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH--------------HHHHcC--
Confidence 2234569999999999988776 78999999999999999999999763221110 000000
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
....+..++..+.+++.+||+.||.+|||++|++++=
T Consensus 224 -----~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp 260 (336)
T 3h4j_B 224 -----VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDP 260 (336)
T ss_dssp -----CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCH
T ss_pred -----CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhCh
Confidence 0011223456789999999999999999999998863
No 81
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.9e-40 Score=369.96 Aligned_cols=384 Identities=25% Similarity=0.329 Sum_probs=258.3
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCC-------------CEEeCCCCcCCcccChhhhCc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNL-------------GFLDLSQNKLLGTIPAAIFNV 68 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~l 68 (824)
+++++|+| +.+|++|+++++|++|+|++|++.+.+|..++++++| ++|++++|.+++ +|.. .
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~ 90 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---P 90 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---C
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---c
Confidence 57788888 7788889999999999999999988888888888764 889999999884 4442 4
Q ss_pred CCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEE
Q 040845 69 STLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLT 148 (824)
Q Consensus 69 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 148 (824)
++|++|++++|++++++.. +++|++|++++|++++ ++.. .++|++|++++|++++ +| .|+++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCccccc-----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 7889999999988886542 4789999999998874 3322 2689999999999886 55 588899999999
Q ss_pred ccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEe
Q 040845 149 LYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVL 228 (824)
Q Consensus 149 L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 228 (824)
+++|+++.++.. .++|++|++++|.+.+++ .+ +. .++|++|++++|++++ +|.. .++|++|++
T Consensus 160 l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~l~--~~-~~-l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 160 VDNNSLKKLPDL---------PPSLEFIAAGNNQLEELP--EL-QN-LPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp CCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC--CC-TT-CTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCcCcccCCC---------cccccEEECcCCcCCcCc--cc-cC-CCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 999988876521 258899999999988864 23 22 4578999999998875 3432 258889999
Q ss_pred cCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCC
Q 040845 229 GGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSI 308 (824)
Q Consensus 229 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 308 (824)
++|.++ .+| .|..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|.. .++|+.|++++|+++.+
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 999888 556 48888999999999998885 4432 4788999999998885 3433 37888999999998877
Q ss_pred CCcccccccccccccccccccCcCCcccccc-ccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCcccccc
Q 040845 309 PLNFWSLKDILDLNLSSNCFSGPLPLEIRNL-KALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDL 387 (824)
Q Consensus 309 p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 387 (824)
|.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+
T Consensus 293 ~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l 356 (454)
T 1jl5_A 293 SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LP 356 (454)
T ss_dssp SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CC
T ss_pred cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hh
Confidence 632 26788899999988752 2 23 588899999999986 4543 578999999999998 4665 46
Q ss_pred ccccEEEccCcccCC--CCcccccCC-------------cccceeeccCCcccC--CCCCCCCccccccccccCCcccc
Q 040845 388 ISLKSLNLSYNNLSG--TIPVSLEKL-------------SYLKDLNLSFNKLKG--EIPRGGSFGNFSAESFKGNELLC 449 (824)
Q Consensus 388 ~~L~~L~L~~N~l~~--~~p~~~~~l-------------~~L~~L~l~~N~l~~--~~p~~~~~~~~~~~~~~~n~~~c 449 (824)
++|+.|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. .+..+.+.+|...|
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVD 430 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCC
Confidence 889999999999997 788888877 789999999999987 5553 23344455554433
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.6e-40 Score=385.87 Aligned_cols=419 Identities=20% Similarity=0.169 Sum_probs=347.2
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|+|++|+|+++.|.+|.++++|++|+|++|+|++..+..|+++++|++|+|++|++++..+.+|.++++|++|+|++|++
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 68999999999999999999999999999999988788899999999999999999977777899999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCc----eEeccCccccccCCccccCCCCCCEEEccCCcCCC-
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLS----KLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTS- 156 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~- 156 (824)
++.........+++|++|+|++|+|++..+..+..+.+++ .++++.|.++.+.+..+.. ..++.|++.+|....
T Consensus 161 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~ 239 (635)
T 4g8a_A 161 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLN 239 (635)
T ss_dssp CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHH
T ss_pred ccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhccccccc
Confidence 8765444445699999999999999988888877665544 6778888887655443332 233344443332110
Q ss_pred ------------------------------CcC----------------------------c----------------cc
Q 040845 157 ------------------------------STL----------------------------D----------------LS 162 (824)
Q Consensus 157 ------------------------------~~~----------------------------~----------------~~ 162 (824)
... . ..
T Consensus 240 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (635)
T 4g8a_A 240 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE 319 (635)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE
T ss_pred ccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc
Confidence 000 0 00
Q ss_pred ccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCC--ccchh
Q 040845 163 FLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNG--SIPIT 240 (824)
Q Consensus 163 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~ 240 (824)
....+....+|+.|++++|.+..+.... ...|+.+++.+|.+... .....+++|+.|++++|.+.. ..+..
T Consensus 320 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 392 (635)
T 4g8a_A 320 RVKDFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQS 392 (635)
T ss_dssp ECGGGGSCCCCSEEEEESCEESSCCCCB-----CTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHH
T ss_pred cccccccchhhhhhhcccccccCcCccc-----chhhhhcccccccCCCC--cccccccccccchhhccccccccccccc
Confidence 0123455678999999999988775543 35799999999987644 345578999999999999863 35667
Q ss_pred hcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccC-CccccCCCCCcEEEcCCCCCCCCCCc-ccccccc
Q 040845 241 LGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSI-PACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDI 318 (824)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L 318 (824)
+..+.+|+.|+++.|.+. ..+..+..+++|+.+++..|...... ...|..+++++.++++.|.++.++.. +..++.|
T Consensus 393 ~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 393 DFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 788999999999999988 45667888999999999998877554 45788999999999999999977554 6779999
Q ss_pred cccccccccc-cCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccC
Q 040845 319 LDLNLSSNCF-SGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSY 397 (824)
Q Consensus 319 ~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 397 (824)
+.|++++|.+ .+..|..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 9999999985 446788999999999999999999999999999999999999999999988888999999999999999
Q ss_pred cccCCCCcccccCC-cccceeeccCCcccCCCC
Q 040845 398 NNLSGTIPVSLEKL-SYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 398 N~l~~~~p~~~~~l-~~L~~L~l~~N~l~~~~p 429 (824)
|+|++..|..+..+ ++|+.|+|++|+|+|.+.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999988 689999999999999876
No 83
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-42 Score=372.12 Aligned_cols=260 Identities=25% Similarity=0.415 Sum_probs=211.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||+||+|++. +++.||||+++... ......+.+|+.++++++||||+++++++.+....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 367889999999999999999853 36789999986442 33445688899999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cEEEe
Q 040845 599 ALVLEYMPHGSLEKYLHSSN------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM---VAHLS 669 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~ 669 (824)
++||||+++|+|.+++...+ ..+++.+++.++.|+++||+||| +.+|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999997643 35899999999999999999999 99999999999999999555 59999
Q ss_pred ecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCC
Q 040845 670 DFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLP 748 (824)
Q Consensus 670 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~ 748 (824)
|||+|+...............+|+.|+|||.+.+..++.++|||||||++|||++ |..||...... .....+....
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~--~~~~~i~~~~- 303 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSGG- 303 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTTC-
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHcCC-
Confidence 9999986543333333344568999999999988899999999999999999998 99998763211 1111111100
Q ss_pred CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 749 ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||+.||++|||+.|++++|+.+.+.
T Consensus 304 -----------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~ 346 (367)
T 3l9p_A 304 -----------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 346 (367)
T ss_dssp -----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -----------------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhC
Confidence 0011224566789999999999999999999999999998763
No 84
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=356.47 Aligned_cols=252 Identities=21% Similarity=0.329 Sum_probs=207.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc------hhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR------AFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||.||+|+.. +|+.||+|++...... ..+.+.+|+.+++.++||||+++++++.+....
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 457999999999999999999875 5899999998754321 356789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM----VAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~Dfg~a 674 (824)
++||||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a 165 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCC
Confidence 99999999999999997654 7899999999999999999999 99999999999999999887 8999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ...........
T Consensus 166 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~~~~~~~~------ 235 (326)
T 2y0a_A 166 HKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANVSAVNYE------ 235 (326)
T ss_dssp EECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHHTCCC------
T ss_pred eECCCCC---ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHHhcCCC------
Confidence 8764322 1233568999999999998899999999999999999999999996532111 11111110000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||..||++|||+.|++++
T Consensus 236 ----------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 272 (326)
T 2y0a_A 236 ----------FEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272 (326)
T ss_dssp ----------CCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred ----------cCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 0011123456778999999999999999999999975
No 85
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=1.4e-40 Score=350.60 Aligned_cols=269 Identities=24% Similarity=0.289 Sum_probs=206.3
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
++|++.+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57899999999999999999875 589999999975532 334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++ ++.+++......+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV-- 155 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC--
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc--
Confidence 9975 777777665568999999999999999999999 8999999999999999999999999999998764322
Q ss_pred cccccccccccccCccCcCCCC-CCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcch---hhcc---
Q 040845 684 MTQTQTLATIGYMAPEYGREGQ-VSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTM---EVVD--- 756 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~-~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--- 756 (824)
.......+|+.|+|||.+.+.. ++.++||||+||++|||++|+.||....................... ....
T Consensus 156 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 235 (292)
T 3o0g_A 156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPD 235 (292)
T ss_dssp SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTT
T ss_pred ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhccccc
Confidence 2233456899999999987765 79999999999999999999988654322222222222211111000 0000
Q ss_pred cc---ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 757 AN---LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 757 ~~---~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.. ..............++..+.+++.+||+.||++|||++|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 283 (292)
T 3o0g_A 236 YKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH 283 (292)
T ss_dssp CCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 00 0000000001112356778999999999999999999999875
No 86
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=5e-41 Score=358.23 Aligned_cols=260 Identities=24% Similarity=0.402 Sum_probs=214.8
Q ss_pred hccCCCCceeeeccceEEEEEEE------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI------RDGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|.+.+.||+|+||.||+|+. .+++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 56889999999999999999986 235889999987543 23456788999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCC-----------------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCC
Q 040845 599 ALVLEYMPHGSLEKYLHSSN-----------------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKP 655 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~ 655 (824)
++||||+++++|.+++.... ..+++.+++.++.|+++||+||| +.+|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence 99999999999999998653 23889999999999999999999 89999999999
Q ss_pred CCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCccccc
Q 040845 656 SNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFN 734 (824)
Q Consensus 656 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~ 734 (824)
+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||.....
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~ 258 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP 258 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH
Confidence 999999999999999999987654443333444567889999999988889999999999999999999 9999876332
Q ss_pred CcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 735 GEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
.. ....+..... ...+..++..+.+++.+||+.||++|||+.|++++|+++.+.
T Consensus 259 ~~--~~~~~~~~~~------------------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 259 ER--LFNLLKTGHR------------------MERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp GG--HHHHHHTTCC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HH--HHHHhhcCCc------------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 11 1111111000 011124567799999999999999999999999999998654
No 87
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=9.5e-41 Score=351.11 Aligned_cols=268 Identities=23% Similarity=0.286 Sum_probs=204.2
Q ss_pred ccCCCCceeeeccceEEEEEEECCCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 527 DKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
++|++.+.||+|+||+||+|+..+|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 57899999999999999999988899999999865432 2346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
+++ +|.+++......+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++....... .
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~ 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV--R 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccc--c
Confidence 975 999999877668999999999999999999999 8999999999999999999999999999998654222 1
Q ss_pred ccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc---ch-----hhc
Q 040845 685 TQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS---TM-----EVV 755 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~ 755 (824)
......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+ ............. .. ...
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp ------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHHCCCChhhchhhhccccc
Confidence 22345689999999988764 58999999999999999999999997643221 1111111111000 00 000
Q ss_pred cccccCchh-hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 756 DANLLSQED-IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 756 ~~~~~~~~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
++....... ........++..+.+++.+||+.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 281 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH 281 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 000000000 0000112356778999999999999999999999874
No 88
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=3.3e-40 Score=349.13 Aligned_cols=266 Identities=14% Similarity=0.137 Sum_probs=217.0
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|+. .+++.||||++... ...+.+.+|+.+++.+ +|+|++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999986 46899999998643 3446788999999999 79999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc-----EEEeecccccccC
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV-----AHLSDFGIAKLLT 678 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~Dfg~a~~~~ 678 (824)
|+ +++|.+++...+..+++.+++.++.|+++|++||| +.+|+||||||+||+++.++. +||+|||++....
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 99999999887767999999999999999999999 999999999999999987776 9999999998765
Q ss_pred CCCCc-----cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcch--hhhhhhhhCCCcc
Q 040845 679 GEDQS-----MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT--LKHWVNDCLPIST 751 (824)
Q Consensus 679 ~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~ 751 (824)
..... .......||+.|+|||.+.+..++.++||||||+++|||++|+.||......... .........+
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~--- 239 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS--- 239 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH---
T ss_pred cccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC---
Confidence 43321 1234456999999999999999999999999999999999999999764322110 0100000000
Q ss_pred hhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 040845 752 MEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRN 812 (824)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 812 (824)
.........++..+.+++.+||+.||++|||++++++.|+++.++...+
T Consensus 240 ------------~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~ 288 (298)
T 1csn_A 240 ------------TPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTT 288 (298)
T ss_dssp ------------SCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred ------------ccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCC
Confidence 0000111245778999999999999999999999999999998765543
No 89
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=369.95 Aligned_cols=254 Identities=21% Similarity=0.297 Sum_probs=206.6
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
..++|++.+.||+|+||+||+|... +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 4578999999999999999999864 68999999987543 23356788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD---DNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~Dfg~a~~~~ 678 (824)
|||+++|+|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||+++ .++.+||+|||+|....
T Consensus 89 ~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 99999999999998765 6899999999999999999999 99999999999999998 56889999999998764
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.... ......||+.|+|||++.+..++.++||||+||++|+|++|..||......+ ....+.......
T Consensus 165 ~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~-~~~~i~~~~~~~--------- 232 (444)
T 3soa_A 165 GEQQ--AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR-LYQQIKAGAYDF--------- 232 (444)
T ss_dssp TTCC--BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHTCCCC---------
T ss_pred CCCc--eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHhCCCCC---------
Confidence 3322 2234579999999999999899999999999999999999999996532111 111111111100
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......+++.+.+++.+||+.||++|||+.|++++
T Consensus 233 -------~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~h 268 (444)
T 3soa_A 233 -------PSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKH 268 (444)
T ss_dssp -------CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred -------CccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 000112346678999999999999999999999885
No 90
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=7.8e-41 Score=361.60 Aligned_cols=253 Identities=21% Similarity=0.313 Sum_probs=205.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-----cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-----GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
.++|++.+.||+|+||+||+|..+ +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 357999999999999999999875 58999999986432 123567899999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeeccc
Q 040845 600 LVLEYMPHGSLEKYLHSS---NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV---AHLSDFGI 673 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg~ 673 (824)
+||||+++++|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999999887543 245899999999999999999999 999999999999999986654 99999999
Q ss_pred ccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchh
Q 040845 674 AKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTME 753 (824)
Q Consensus 674 a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (824)
+....... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.... +............
T Consensus 180 a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~--~~~~~~i~~~~~~----- 250 (351)
T 3c0i_A 180 AIQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK--ERLFEGIIKGKYK----- 250 (351)
T ss_dssp CEECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH--HHHHHHHHHTCCC-----
T ss_pred eeEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH--HHHHHHHHcCCCC-----
Confidence 98764322 22334569999999999999899999999999999999999999997621 1111111111100
Q ss_pred hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||+.||++|||+.|++++
T Consensus 251 -----------~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~h 287 (351)
T 3c0i_A 251 -----------MNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNH 287 (351)
T ss_dssp -----------CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred -----------CCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0011122456778999999999999999999999875
No 91
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=4.5e-41 Score=352.35 Aligned_cols=259 Identities=24% Similarity=0.394 Sum_probs=201.5
Q ss_pred hccCCCCceeeeccceEEEEEEECC----CcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD----GMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|.+.. +..||+|+..... ....+.+.+|+.++++++||||+++++++. ++..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 4689999999999999999998643 4579999986543 234567889999999999999999999985 456789
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 169 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcc
Confidence 99999999999999877767999999999999999999999 899999999999999999999999999999876433
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. .......+|+.|+|||.+.+..++.++||||+|+++|||++ |..||......+ ....+....
T Consensus 170 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~~i~~~~------------ 234 (281)
T 1mp8_A 170 TY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIENGE------------ 234 (281)
T ss_dssp ----------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTC------------
T ss_pred cc-cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHHHHHcCC------------
Confidence 22 22233456789999999988889999999999999999997 899987643221 111111000
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
....+..++..+.+++.+||+.||++|||+.|++++|+++.++.
T Consensus 235 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 235 ------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 00112345677999999999999999999999999999997654
No 92
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=353.60 Aligned_cols=273 Identities=21% Similarity=0.304 Sum_probs=211.6
Q ss_pred hccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC--eeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE--FKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 601 (824)
.++|.+.+.||+|+||+||+|++.. ++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 3679999999999999999998764 8999999987543 234567789999999999999999999987655 77999
Q ss_pred EeccCCCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----CCCCcEEEeeccccc
Q 040845 602 LEYMPHGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL----DDNMVAHLSDFGIAK 675 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl~Dfg~a~ 675 (824)
|||+++++|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999998654 34899999999999999999999 9999999999999999 788889999999998
Q ss_pred ccCCCCCccccccccccccccCccCcC--------CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchh---hhhhh
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGR--------EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTL---KHWVN 744 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~--------~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~---~~~~~ 744 (824)
....... .....||+.|+|||++. +..++.++|||||||++|||++|+.||.......... .....
T Consensus 165 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~ 241 (319)
T 4euu_A 165 ELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (319)
T ss_dssp ECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHH
T ss_pred ecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhc
Confidence 7644332 23356899999999875 5678999999999999999999999997543322211 11111
Q ss_pred hhCCCcchhhccc-----cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHH
Q 040845 745 DCLPISTMEVVDA-----NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLK 804 (824)
Q Consensus 745 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~ 804 (824)
...+......... .+.............++..+.+++.+||+.||++|||++|++++..+
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d 306 (319)
T 4euu_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (319)
T ss_dssp HCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred CCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence 1111110000000 00000011112234677889999999999999999999999999876
No 93
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=5.5e-41 Score=348.99 Aligned_cols=258 Identities=27% Similarity=0.419 Sum_probs=214.0
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|.+.+++.||+|++.... ...+.+.+|+++++.++||||+++++++.+++..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 46788999999999999999999889999999997543 33467899999999999999999999999999999999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCccc
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMT 685 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~ 685 (824)
++++|.+++......+++.++..++.|++.|++||| +.+++||||||+||+++.++.+||+|||++...... ....
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~-~~~~ 161 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-QYTS 161 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH-HHHS
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEcccccccccccc-cccc
Confidence 999999999887667899999999999999999999 999999999999999999999999999999865322 1112
Q ss_pred cccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchh
Q 040845 686 QTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQED 764 (824)
Q Consensus 686 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (824)
.....++..|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+.....
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~--~~~~i~~~~~---------------- 223 (267)
T 3t9t_A 162 STGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSE--VVEDISTGFR---------------- 223 (267)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTCC----------------
T ss_pred cccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHH--HHHHHhcCCc----------------
Confidence 233457788999999988889999999999999999999 899987532111 1111111000
Q ss_pred hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 765 IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 765 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
...+..++..+.+++.+||+.||++|||+.|++++|+++.++
T Consensus 224 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 224 --LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp --CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred --CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 001123456789999999999999999999999999998763
No 94
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.7e-41 Score=379.89 Aligned_cols=258 Identities=25% Similarity=0.437 Sum_probs=212.9
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|+++++..||||+++.. ....+.+.+|+.+++.++||||+++++++. .+..++||||+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~ 264 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM 264 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCC
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeec
Confidence 5678899999999999999999988999999999754 345678999999999999999999999986 56789999999
Q ss_pred CCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 606 PHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 606 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
++|+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 265 ~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~~ 340 (454)
T 1qcf_A 265 AKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YT 340 (454)
T ss_dssp TTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-HH
T ss_pred CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-ee
Confidence 9999999997543 36788999999999999999999 8999999999999999999999999999998764221 11
Q ss_pred ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCch
Q 040845 685 TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQE 763 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (824)
......+|..|+|||.+..+.++.++|||||||++|||+| |+.||......+ ....+...
T Consensus 341 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~----------------- 401 (454)
T 1qcf_A 341 AREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPE--VIRALERG----------------- 401 (454)
T ss_dssp TTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHH--HHHHHHHT-----------------
T ss_pred ccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC-----------------
Confidence 2233446788999999988899999999999999999999 999987632211 11111110
Q ss_pred hhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 764 DIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 764 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
.+...+..++..+.++|.+||+.||++|||+.++++.|+++..+.
T Consensus 402 -~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 402 -YRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp -CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred -CCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence 111123456778999999999999999999999999998875443
No 95
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=9.1e-41 Score=364.09 Aligned_cols=253 Identities=19% Similarity=0.288 Sum_probs=209.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||.||+|... +|+.||+|++..........+.+|+.+++.++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999875 5899999999765444566788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC--CCcEEEeecccccccCCCCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD--NMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~--~~~~kl~Dfg~a~~~~~~~~ 682 (824)
+++|+|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++.......
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~- 205 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDE- 205 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTS-
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCc-
Confidence 9999999999877667999999999999999999999 999999999999999974 5789999999998764332
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+....... +
T Consensus 206 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~-~~~~~i~~~~~~~------~------ 270 (387)
T 1kob_A 206 --IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL-ETLQNVKRCDWEF------D------ 270 (387)
T ss_dssp --CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH-HHHHHHHHCCCCC------C------
T ss_pred --ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCCCC------C------
Confidence 223346899999999999989999999999999999999999999763211 1111111110000 0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
......++..+.+++.+||+.||++|||+.|++++
T Consensus 271 ----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 305 (387)
T 1kob_A 271 ----EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEH 305 (387)
T ss_dssp ----SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred ----ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhC
Confidence 00112346678999999999999999999999985
No 96
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=5.3e-41 Score=359.47 Aligned_cols=260 Identities=25% Similarity=0.475 Sum_probs=196.6
Q ss_pred hccCCCCceeeeccceEEEEEEECC-C---cEEEEEEeecc--ccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCee-
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-G---MEVAVKVFNLQ--CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK- 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~- 598 (824)
.++|++.+.||+|+||.||+|++.. + ..||||+++.. .....+.+.+|++++++++||||+++++++......
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 4689999999999999999998654 3 27999998754 334567889999999999999999999999876655
Q ss_pred -----EEEEeccCCCCHHHHhhhCC-----CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 040845 599 -----ALVLEYMPHGSLEKYLHSSN-----YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHL 668 (824)
Q Consensus 599 -----~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 668 (824)
++||||+++|+|.+++.... ..+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEE
Confidence 89999999999999986432 25899999999999999999999 899999999999999999999999
Q ss_pred eecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhC
Q 040845 669 SDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 669 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
+|||++................+++.|+|||.+.+..++.++||||+||++|||++ |+.||......+. ........
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~-~~~~~~~~- 256 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEI-YNYLIGGN- 256 (323)
T ss_dssp CCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGH-HHHHHTTC-
T ss_pred eeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHH-HHHHhcCC-
Confidence 99999987654443333444557889999999998899999999999999999999 8999876332211 11111100
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||+.||++|||+.|+++.|+++.+.
T Consensus 257 ------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 257 ------------------RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp ------------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ------------------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 0011123556789999999999999999999999999998763
No 97
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=6.4e-41 Score=365.01 Aligned_cols=255 Identities=21% Similarity=0.296 Sum_probs=203.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||+||+|+.+ +++.||||+++... ....+.+..|..+++++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 468999999999999999999876 48899999997652 23345678899999887 89999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 999999999999998765 6899999999999999999999 999999999999999999999999999999853222
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcch---hhhhhhhhCCCcchhhccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT---LKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 757 (824)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+.. ...+.... ....
T Consensus 207 ~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~-------i~~~ 277 (396)
T 4dc2_A 207 G--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV-------ILEK 277 (396)
T ss_dssp T--CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHH-------HHHC
T ss_pred C--CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHH-------Hhcc
Confidence 1 2234457999999999999999999999999999999999999999653221110 00000000 0000
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCH------HHHHHH
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINA------KEIVAK 801 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~------~evl~~ 801 (824)
....+..++..+.+++.+||+.||++||++ +|+++|
T Consensus 278 --------~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~H 319 (396)
T 4dc2_A 278 --------QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 319 (396)
T ss_dssp --------CCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHS
T ss_pred --------ccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcC
Confidence 001122356678999999999999999996 565553
No 98
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.2e-41 Score=364.79 Aligned_cols=249 Identities=24% Similarity=0.321 Sum_probs=201.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||||+++... ....+.+..|..+++.+ +||||+++++++.+.+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 478999999999999999999875 58999999997542 23456678899999988 69999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++...+ .+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 102 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~ 177 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICN 177 (353)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecccC
Confidence 999999999999998765 6899999999999999999999 999999999999999999999999999999853322
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
........||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ..........
T Consensus 178 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~~~~------------- 241 (353)
T 3txo_A 178 --GVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDD-LFEAILNDEV------------- 241 (353)
T ss_dssp ----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC-------------
T ss_pred --CccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCC-------------
Confidence 222334569999999999988889999999999999999999999997632211 1111111100
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCH------HHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINA------KEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~------~evl~~ 801 (824)
..+..++..+.+++.+||+.||++||++ +|+++|
T Consensus 242 -------~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~h 281 (353)
T 3txo_A 242 -------VYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRH 281 (353)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTS
T ss_pred -------CCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhC
Confidence 0111245668899999999999999998 777664
No 99
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1.3e-40 Score=360.73 Aligned_cols=253 Identities=21% Similarity=0.342 Sum_probs=207.0
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
..++|++.+.||+|+||.||+|..+ +|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.+++..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 3568999999999999999999875 58999999997543 23456788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC---CcEEEeecccccccC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN---MVAHLSDFGIAKLLT 678 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~Dfg~a~~~~ 678 (824)
|||+++|+|.+++.... .+++.++..++.||+.||+||| +.+|+||||||+||+++.+ +.+||+|||++....
T Consensus 107 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 99999999999997654 6899999999999999999999 8999999999999999865 459999999998764
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... ......||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ............
T Consensus 183 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~-~~~~i~~~~~~~--------- 249 (362)
T 2bdw_A 183 DSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR-LYAQIKAGAYDY--------- 249 (362)
T ss_dssp TCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCC---------
T ss_pred CCc---ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCCCC---------
Confidence 332 2234569999999999999899999999999999999999999987532111 111111110000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......++..+.+++.+||..||++|||+.|++++
T Consensus 250 -------~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 250 -------PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp -------CTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred -------CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 000112356678999999999999999999999876
No 100
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=2.1e-41 Score=362.58 Aligned_cols=259 Identities=24% Similarity=0.392 Sum_probs=207.7
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcE----EEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGME----VAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
++|++.+.||+|+||+||+|++. +++. ||+|.+.... ......+.+|+.+++.++||||+++++++. +...++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 57889999999999999999865 3443 7888775432 334566788999999999999999999986 456889
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 168 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD 168 (325)
T ss_dssp EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence 99999999999999876567889999999999999999999 899999999999999999999999999999987655
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
..........+|..|+|||.+.++.++.++||||+|+++|||+| |+.||......+ ....+....
T Consensus 169 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~--~~~~~~~~~------------ 234 (325)
T 3kex_A 169 DKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE--VPDLLEKGE------------ 234 (325)
T ss_dssp TTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTH--HHHHHHTTC------------
T ss_pred cccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHH--HHHHHHcCC------------
Confidence 44444455678889999999998899999999999999999999 999997633221 111111100
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
....+..++..+.+++.+||..||++|||+.|++++|+++....
T Consensus 235 ------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 235 ------RLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp ------BCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred ------CCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 00111123445788999999999999999999999999886533
No 101
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=5.8e-41 Score=355.63 Aligned_cols=269 Identities=23% Similarity=0.417 Sum_probs=210.6
Q ss_pred ccCCCCceeeeccceEEEEEEE-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecC--Cee
Q 040845 527 DKFSENNLIGRGGFGSVYKARI-----RDGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE--EFK 598 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 598 (824)
..|++.+.||+|+||.||+|++ .+++.||||++.... ....+.+.+|+++++.++||||+++++++.++ ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 4688899999999999999984 358999999987543 33457789999999999999999999999876 678
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||+++|+|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 177 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE 177 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccccccc
Confidence 9999999999999999776667999999999999999999999 9999999999999999999999999999998775
Q ss_pred CCCCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc---chhh
Q 040845 679 GEDQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS---TMEV 754 (824)
Q Consensus 679 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~ 754 (824)
..... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.|+...... +.....+.. ....
T Consensus 178 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~~~~~~~~~~~~~~ 251 (302)
T 4e5w_A 178 TDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMAL------FLKMIGPTHGQMTVTR 251 (302)
T ss_dssp TTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHH------HHHHHCSCCGGGHHHH
T ss_pred CCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhH------HhhccCCcccccCHHH
Confidence 44322 2233456888899999998888999999999999999999999986542110 000000000 0000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIR 806 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 806 (824)
..... ........+..++..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 252 ~~~~~--~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 252 LVNTL--KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHHH--HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHH--hccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 00000 000111122356778999999999999999999999999999874
No 102
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=1e-40 Score=351.00 Aligned_cols=259 Identities=27% Similarity=0.443 Sum_probs=197.5
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|++. ..||||+++... ....+.+.+|+.+++.++||||+++++++ .....++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 468999999999999999999865 369999986543 23456788999999999999999999965 4556789999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.........
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 176 (289)
T 3og7_A 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGS 176 (289)
T ss_dssp CCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC-----------
T ss_pred ecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceecccccccccc
Confidence 99999999999877778999999999999999999999 899999999999999999999999999999865433333
Q ss_pred cccccccccccccCccCcC---CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhh-hCCCcchhhccccc
Q 040845 684 MTQTQTLATIGYMAPEYGR---EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVND-CLPISTMEVVDANL 759 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 759 (824)
.......||+.|+|||.+. +..++.++||||+|+++|||++|+.||......+. ....+.. .......
T Consensus 177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~------- 248 (289)
T 3og7_A 177 HQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQ-IIEMVGRGSLSPDLS------- 248 (289)
T ss_dssp -------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHH-HHHHHHHTSCCCCTT-------
T ss_pred ccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHH-HHHHhcccccCcchh-------
Confidence 3334456899999999886 56788999999999999999999999976432221 1111111 1110000
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIR 806 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 806 (824)
.....++..+.+++.+||+.||++|||+.|+++.|+++.
T Consensus 249 --------~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~ 287 (289)
T 3og7_A 249 --------KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287 (289)
T ss_dssp --------SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred --------hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHh
Confidence 011245677999999999999999999999999998864
No 103
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-40 Score=353.98 Aligned_cols=246 Identities=25% Similarity=0.323 Sum_probs=206.0
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||+|+++... ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 467999999999999999999875 58999999997542 23456778899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.+|.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 99999999999998765 6899999999999999999999 999999999999999999999999999999865422
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||...... ...........
T Consensus 160 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~~~~-------------- 220 (318)
T 1fot_A 160 ----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM-KTYEKILNAEL-------------- 220 (318)
T ss_dssp ----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHCCC--------------
T ss_pred ----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH-HHHHHHHhCCC--------------
Confidence 22346899999999999999999999999999999999999999753211 11111111100
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRI-----NAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 801 (824)
..+..++..+.+++.+|+..||++|| +++|+++|
T Consensus 221 ------~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~h 259 (318)
T 1fot_A 221 ------RFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 259 (318)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred ------CCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcC
Confidence 01123456789999999999999999 88998865
No 104
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.9e-40 Score=348.91 Aligned_cols=253 Identities=27% Similarity=0.451 Sum_probs=206.0
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc-------hhhhHHHHHHHHhcCCCCcceeEEeeeecCCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR-------AFKSFDVECAMMKSIRHRNLVKVISSCSNEEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 597 (824)
.++|++.+.||+|+||+||+|++. +++.||||++...... ..+.+.+|+.++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 367899999999999999999874 6899999998654321 1267889999999999999999999997665
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCc-----EEEee
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAP--VIHCDLKPSNVLLDDNMV-----AHLSD 670 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~-----~kl~D 670 (824)
++||||+++|+|.+++......+++..++.++.|++.|++||| +.+ |+||||||+||+++.++. +||+|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 6999999999999999877778999999999999999999999 888 999999999999988776 99999
Q ss_pred cccccccCCCCCccccccccccccccCccCcC--CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCC
Q 040845 671 FGIAKLLTGEDQSMTQTQTLATIGYMAPEYGR--EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLP 748 (824)
Q Consensus 671 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~--~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 748 (824)
||+++.... ......||+.|+|||.+. ...++.++||||+||++|||++|+.||...................
T Consensus 173 fg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 247 (287)
T 4f0f_A 173 FGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL 247 (287)
T ss_dssp CTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC
T ss_pred CCccccccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC
Confidence 999975322 233456899999999983 4567899999999999999999999997644333222221111000
Q ss_pred CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHH
Q 040845 749 ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKI 805 (824)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 805 (824)
....+..++..+.+++.+||+.||++|||+.|+++.|+++
T Consensus 248 -----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 248 -----------------RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp -----------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred -----------------CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 0011234567799999999999999999999999999763
No 105
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=358.80 Aligned_cols=281 Identities=26% Similarity=0.346 Sum_probs=204.2
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHH--HhcCCCCcceeEEeeee-----cCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAM--MKSIRHRNLVKVISSCS-----NEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~-----~~~~~ 598 (824)
.++|++.+.||+|+||.||+|+.. ++.||||++.... ...+..|.++ +..++||||+++++++. .....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSLD-ERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEEC-CeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 468999999999999999999874 8999999987542 2334444444 55689999999998543 23467
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC---------CeEecCCCCCCeeeCCCCcEEEe
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSA---------PVIHCDLKPSNVLLDDNMVAHLS 669 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~---------~ivH~Dlk~~Nill~~~~~~kl~ 669 (824)
++||||+++|+|.+++.... .++..+..++.|+++||+||| +. +|+||||||+||+++.++.+||+
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 89999999999999997664 588999999999999999999 77 99999999999999999999999
Q ss_pred ecccccccCCCCC------ccccccccccccccCccCcCC-------CCCCccchHHHHHHHHHHHHhCCCCCcccccCc
Q 040845 670 DFGIAKLLTGEDQ------SMTQTQTLATIGYMAPEYGRE-------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGE 736 (824)
Q Consensus 670 Dfg~a~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~-------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~ 736 (824)
|||++..+..... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.......
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~ 242 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence 9999987653321 112234569999999999876 456789999999999999999988765432211
Q ss_pred chhhhhhhhhCCCcchhh----c-cccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 737 MTLKHWVNDCLPISTMEV----V-DANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.....+..........+. . .................++..+.+++.+||+.||++|||++|+++.|+++...+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~ 322 (336)
T 3g2f_A 243 EYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWER 322 (336)
T ss_dssp CCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC
T ss_pred HHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHh
Confidence 111111110110000000 0 00000000011111234677899999999999999999999999999999999988
Q ss_pred ccCC
Q 040845 812 NVGG 815 (824)
Q Consensus 812 ~~~~ 815 (824)
+-+.
T Consensus 323 ~~~~ 326 (336)
T 3g2f_A 323 NKSV 326 (336)
T ss_dssp ----
T ss_pred cccC
Confidence 7544
No 106
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1e-40 Score=363.13 Aligned_cols=272 Identities=16% Similarity=0.196 Sum_probs=210.6
Q ss_pred hccCCCCceeeeccceEEEEEEECC------CcEEEEEEeeccccch-----------hhhHHHHHHHHhcCCCCcceeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD------GMEVAVKVFNLQCGRA-----------FKSFDVECAMMKSIRHRNLVKV 588 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~l 588 (824)
.++|++.+.||+|+||.||+|.+.+ ++.||||++....... ...+..|+..++.++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4689999999999999999998764 4789999987543211 1223446667788899999999
Q ss_pred EeeeecC----CeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC--C
Q 040845 589 ISSCSNE----EFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD--D 662 (824)
Q Consensus 589 ~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~--~ 662 (824)
++++... ...++||||+ +++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++ .
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~~ 189 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYKN 189 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESSC
T ss_pred EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecCC
Confidence 9998764 5589999999 99999999887668999999999999999999999 89999999999999999 8
Q ss_pred CCcEEEeecccccccCCCCCcc-----ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcc
Q 040845 663 NMVAHLSDFGIAKLLTGEDQSM-----TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM 737 (824)
Q Consensus 663 ~~~~kl~Dfg~a~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~ 737 (824)
++.+||+|||+|+.+....... ......||+.|+|||++.+..++.++|||||||++|||+||+.||........
T Consensus 190 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~ 269 (364)
T 3op5_A 190 PDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPK 269 (364)
T ss_dssp TTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHH
T ss_pred CCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHH
Confidence 8999999999998764332211 11334599999999999999999999999999999999999999986432221
Q ss_pred hhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 738 TLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
...+..........+..+..+ ....++..+.+++..||..||++||++.++++.|+++.+....
T Consensus 270 -~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~ 333 (364)
T 3op5_A 270 -YVRDSKIRYRENIASLMDKCF---------PAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGS 333 (364)
T ss_dssp -HHHHHHHHHHHCHHHHHHHHS---------CTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHhhhhHHHHHHHhc---------ccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 111111111111111111111 0124577899999999999999999999999999998876544
No 107
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=2.9e-40 Score=354.63 Aligned_cols=264 Identities=20% Similarity=0.213 Sum_probs=213.3
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|+. .+|+.||||++... ...+.+.+|+.+++.+ +||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMK--SRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETT--CSSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccc--cchHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 36799999999999999999986 46899999998754 2345688999999999 99999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc-----EEEeecccccccC
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV-----AHLSDFGIAKLLT 678 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-----~kl~Dfg~a~~~~ 678 (824)
|+ +++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+|..+.
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99 89999999876668999999999999999999999 899999999999999998887 9999999998764
Q ss_pred CCCCcc-----ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchh
Q 040845 679 GEDQSM-----TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTME 753 (824)
Q Consensus 679 ~~~~~~-----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (824)
...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......+. .......
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~--~~~~~~i------- 232 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTL--KERYQKI------- 232 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSH--HHHHHHH-------
T ss_pred cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccH--HHHHHHH-------
Confidence 433211 12356799999999999999999999999999999999999999986432211 1110000
Q ss_pred hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 754 VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
........ .......++ .+.+++..||..||++||++.++++.|+++.+..
T Consensus 233 -~~~~~~~~---~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 233 -GDTKRATP---IEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp -HHHHHHSC---HHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred -HhhhccCC---HHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 00000000 000011244 8999999999999999999999999999887654
No 108
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=5.8e-41 Score=367.50 Aligned_cols=258 Identities=23% Similarity=0.280 Sum_probs=208.3
Q ss_pred HHHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC
Q 040845 521 ELFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE 596 (824)
Q Consensus 521 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 596 (824)
++....++|++.+.||+|+||+||+|+.+ +++.||+|+++... ....+.+.+|+.+++.++||||+++++++.++.
T Consensus 63 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~ 142 (410)
T 3v8s_A 63 DLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDR 142 (410)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECC
Confidence 34445688999999999999999999876 48899999987532 233456889999999999999999999999999
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
..|+||||+++|+|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 143 ~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~ 217 (410)
T 3v8s_A 143 YLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK 217 (410)
T ss_dssp EEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEe
Confidence 999999999999999999764 5889999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCccccccccccccccCccCcCCCC----CCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcch
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREGQ----VSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTM 752 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 752 (824)
..... ........||+.|+|||++.+.. ++.++||||+||++|||++|+.||...... .....+.....
T Consensus 218 ~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~-~~~~~i~~~~~----- 290 (410)
T 3v8s_A 218 MNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV-GTYSKIMNHKN----- 290 (410)
T ss_dssp CCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHTHHH-----
T ss_pred eccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh-hHHHHHHhccc-----
Confidence 64322 12233457999999999887654 789999999999999999999999753211 11111111000
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCC--CCCHHHHHHH
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQ--RINAKEIVAK 801 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--Rpt~~evl~~ 801 (824)
....+....++..+.+++.+||+.+|.+ ||+++|+++|
T Consensus 291 -----------~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 291 -----------SLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp -----------HCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred -----------cccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 0000111134567899999999999998 9999999886
No 109
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=7.2e-41 Score=348.91 Aligned_cols=251 Identities=27% Similarity=0.429 Sum_probs=195.9
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeecccc----chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCG----RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|.+. ++.||||+++.... ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 367889999999999999999986 89999999865432 2346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC---eEecCCCCCCeeeCC--------CCcEEEee
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAP---VIHCDLKPSNVLLDD--------NMVAHLSD 670 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~---ivH~Dlk~~Nill~~--------~~~~kl~D 670 (824)
|||+++++|.+++... .+++..++.++.|+++|++||| +.+ |+||||||+||+++. ++.+||+|
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D 159 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD 159 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence 9999999999999643 6899999999999999999999 777 999999999999986 77899999
Q ss_pred cccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc
Q 040845 671 FGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS 750 (824)
Q Consensus 671 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 750 (824)
||.+....... .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||......... ........
T Consensus 160 fg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~--- 231 (271)
T 3dtc_A 160 FGLAREWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVA-YGVAMNKL--- 231 (271)
T ss_dssp CCC-----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHH-HHHHTSCC---
T ss_pred CCccccccccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH-HhhhcCCC---
Confidence 99998654322 22346899999999998888999999999999999999999999763221111 00000000
Q ss_pred chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHH
Q 040845 751 TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKI 805 (824)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~ 805 (824)
....+..++..+.+++.+||+.||++|||+.|++++|+++
T Consensus 232 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 232 ---------------ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ---------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ---------------CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 0011224566799999999999999999999999999764
No 110
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1.1e-40 Score=358.42 Aligned_cols=262 Identities=26% Similarity=0.441 Sum_probs=214.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC--------CCcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeEEeeeecC
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR--------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKVISSCSNE 595 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 595 (824)
.++|++.+.||+|+||.||+|++. ++..||||+++.... ...+.+.+|+++++++ +||||+++++++.+.
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 478999999999999999999863 467899999875432 3456788999999999 899999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSN---------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL 660 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill 660 (824)
+..++||||+++|+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence 99999999999999999998654 24889999999999999999999 8999999999999999
Q ss_pred CCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchh
Q 040845 661 DDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTL 739 (824)
Q Consensus 661 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~ 739 (824)
+.++.+||+|||++................+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... ..
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~ 268 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE--EL 268 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH--HH
Confidence 9999999999999987654433333344557889999999988889999999999999999999 99998753211 11
Q ss_pred hhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 740 KHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
...+..... ...+..++..+.+++.+||..||++|||+.|++++|+++.....
T Consensus 269 ~~~~~~~~~------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~ 321 (334)
T 2pvf_A 269 FKLLKEGHR------------------MDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 321 (334)
T ss_dssp HHHHHHTCC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCC------------------CCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence 111111000 01112456678999999999999999999999999999987543
No 111
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-39 Score=364.87 Aligned_cols=349 Identities=27% Similarity=0.422 Sum_probs=272.3
Q ss_pred cCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCcc
Q 040845 18 DNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLE 97 (824)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 97 (824)
..+++|+.|++++|.++. +| .+..+++|++|||++|.+++. +. +.++++|++|++++|++++.+. ...+++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP---LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCC
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh---hcCCCCCC
Confidence 456789999999999984 55 488899999999999999854 33 8899999999999999988776 34689999
Q ss_pred EEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEE
Q 040845 98 VLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHIS 177 (824)
Q Consensus 98 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~ 177 (824)
+|+|++|.+++..+ +..+++|++|++++|.+++. + .+.++++|++|+++ |.+... ..+.++++|++|+
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-------~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-------KPLANLTTLERLD 183 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-------GGGTTCTTCCEEE
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-------hhhccCCCCCEEE
Confidence 99999999985533 88899999999999998854 3 58889999999996 444443 2377888999999
Q ss_pred CcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccC
Q 040845 178 LSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQL 257 (824)
Q Consensus 178 Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 257 (824)
+++|.+.++. .+..+++|+.|++++|.+.+..+ +..+++|++|++++|++
T Consensus 184 l~~n~l~~~~----------------------------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 184 ISSNKVSDIS----------------------------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CCSSCCCCCG----------------------------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CcCCcCCCCh----------------------------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence 9998876541 24456777777777777775544 66677777777777777
Q ss_pred cccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCcccc
Q 040845 258 EGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIR 337 (824)
Q Consensus 258 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 337 (824)
++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|++++..+ +.
T Consensus 234 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 234 KDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred ccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hc
Confidence 643 356677777777777777775544 7777788888888888877765 6677888888888888875443 77
Q ss_pred ccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCccccee
Q 040845 338 NLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDL 417 (824)
Q Consensus 338 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 417 (824)
.+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 88888888888888887655 77888899999999988854 468888899999999999987666 7888899999
Q ss_pred eccCCcccCCC
Q 040845 418 NLSFNKLKGEI 428 (824)
Q Consensus 418 ~l~~N~l~~~~ 428 (824)
++++|++++.+
T Consensus 381 ~l~~n~~~~~p 391 (466)
T 1o6v_A 381 GLNDQAWTNAP 391 (466)
T ss_dssp ECCCEEEECCC
T ss_pred eccCCcccCCc
Confidence 99999988753
No 112
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=5.4e-41 Score=375.24 Aligned_cols=262 Identities=27% Similarity=0.423 Sum_probs=209.5
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|+++++..||||+++... ...+.+.+|++++++++||||+++++++.+ +..++||||+
T Consensus 183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~ 260 (452)
T 1fmk_A 183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYM 260 (452)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCC
T ss_pred hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhh
Confidence 46788999999999999999999888899999987543 345778999999999999999999999876 6789999999
Q ss_pred CCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 606 PHGSLEKYLHSS-NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 606 ~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
++|+|.+++... ...+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... ..
T Consensus 261 ~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~~ 336 (452)
T 1fmk_A 261 SKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YT 336 (452)
T ss_dssp TTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC---------
T ss_pred cCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-ee
Confidence 999999999753 246899999999999999999999 9999999999999999999999999999998764322 22
Q ss_pred ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCch
Q 040845 685 TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQE 763 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (824)
......++..|+|||.+.++.++.++||||||+++|||++ |+.||......+ ....+...
T Consensus 337 ~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~----------------- 397 (452)
T 1fmk_A 337 ARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERG----------------- 397 (452)
T ss_dssp ------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTT-----------------
T ss_pred cccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC-----------------
Confidence 2233457889999999988899999999999999999999 899987532211 11111100
Q ss_pred hhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcccc
Q 040845 764 DIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRNV 813 (824)
Q Consensus 764 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~ 813 (824)
.+...+..++..+.++|.+||+.||++|||++++++.|+++..+...++
T Consensus 398 -~~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~ 446 (452)
T 1fmk_A 398 -YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY 446 (452)
T ss_dssp -CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCC
T ss_pred -CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccc
Confidence 0111223567789999999999999999999999999988765544433
No 113
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.2e-40 Score=355.74 Aligned_cols=271 Identities=24% Similarity=0.375 Sum_probs=218.6
Q ss_pred cHHHHHHhhccCCCCceeeeccceEEEEEEE------CCCcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeEE
Q 040845 518 SYLELFQATDKFSENNLIGRGGFGSVYKARI------RDGMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKVI 589 (824)
Q Consensus 518 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~ 589 (824)
....+....++|++.+.||+|+||.||+|++ .+++.||||+++.... ...+.+.+|+.+++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 3444455568999999999999999999974 2468999999875432 2346788999999999 799999999
Q ss_pred eeeecCC-eeEEEEeccCCCCHHHHhhhCCCC---------------CCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCC
Q 040845 590 SSCSNEE-FKALVLEYMPHGSLEKYLHSSNYS---------------LDIFQRLNIMIDVASALEYLHFGYSAPVIHCDL 653 (824)
Q Consensus 590 ~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~~---------------~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 653 (824)
+++..++ ..++||||+++|+|.+++...... +++.+++.++.|+++|++||| +.+|+||||
T Consensus 98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~di 174 (316)
T 2xir_A 98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDL 174 (316)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSCC
T ss_pred EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCcccccC
Confidence 9987654 589999999999999999875422 789999999999999999999 899999999
Q ss_pred CCCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCccc
Q 040845 654 KPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDEL 732 (824)
Q Consensus 654 k~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~ 732 (824)
||+||+++.++.+||+|||++................+|+.|+|||.+.+..++.++||||+|+++|||+| |..||...
T Consensus 175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~ 254 (316)
T 2xir_A 175 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 254 (316)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence 99999999999999999999987654444444445568899999999988899999999999999999998 99998764
Q ss_pred ccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 733 FNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
...+......... .. ...+..++..+.+++.+||+.||++|||+.|++++|+++.++..
T Consensus 255 ~~~~~~~~~~~~~-~~------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 255 KIDEEFCRRLKEG-TR------------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp CCSHHHHHHHHHT-CC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHhccC-cc------------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 3222111111110 00 00112245678999999999999999999999999999987543
No 114
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=356.38 Aligned_cols=260 Identities=24% Similarity=0.408 Sum_probs=204.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcE----EEEEEeecc-ccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGME----VAVKVFNLQ-CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
.++|++.+.||+|+||.||+|++. +++. ||+|.+... .....+.+.+|+.+++.++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 367999999999999999999864 3444 577766433 2345677899999999999999999999998765 78
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~ 679 (824)
+|+||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999999887778999999999999999999999 99999999999999999999999999999987654
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
...........+|+.|+|||.+.+..++.++||||+||++|||++ |+.||......+ ....+....
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~--~~~~~~~~~----------- 236 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE--ISSILEKGE----------- 236 (327)
T ss_dssp ----------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHHHTTC-----------
T ss_pred ccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcCC-----------
Confidence 444444444567889999999999999999999999999999999 999997643221 111111110
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
....+..++..+.+++.+||..||++|||+.|+++.|+++.+..
T Consensus 237 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 237 -------RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp -------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred -------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 01112235667899999999999999999999999999987543
No 115
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=5.1e-41 Score=360.40 Aligned_cols=250 Identities=23% Similarity=0.333 Sum_probs=204.4
Q ss_pred HhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCee
Q 040845 524 QATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 524 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 598 (824)
...++|++.+.||+|+||.||+|+.+ +|+.||||+++... ....+.+..|..+++.+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34678999999999999999999876 58999999997542 33456677899999877 899999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.+|.+||+|||+|+...
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 169 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM 169 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence 99999999999999998755 6899999999999999999999 8999999999999999999999999999998543
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+....+
T Consensus 170 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~i~~~~~---------- 235 (345)
T 1xjd_A 170 LGD--AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE--ELFHSIRMDNP---------- 235 (345)
T ss_dssp CTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCCC----------
T ss_pred cCC--CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHhCCC----------
Confidence 222 1233456999999999999999999999999999999999999999753211 11111110000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHH-HHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAK-EIVA 800 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~-evl~ 800 (824)
..+..++..+.+++.+||..||++||++. |+++
T Consensus 236 ---------~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~ 269 (345)
T 1xjd_A 236 ---------FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ 269 (345)
T ss_dssp ---------CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred ---------CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHc
Confidence 00122456789999999999999999997 6654
No 116
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=6.3e-41 Score=359.38 Aligned_cols=277 Identities=25% Similarity=0.337 Sum_probs=214.5
Q ss_pred hccCCCCceeeeccceEEEEEEE-----CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeee--cCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-----RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCS--NEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 598 (824)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 36789999999999999999984 358899999997665556677899999999999999999999886 45678
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||+++++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 9999999999999999876557899999999999999999999 9999999999999999999999999999998765
Q ss_pred CCCCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 679 GEDQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 679 ~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
..... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.||............+.. .........+.
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 256 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCER--DVPALSRLLEL 256 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC------CCHHHHHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhccccc--ccccHHHHHHH
Confidence 43322 2233455888899999998888999999999999999999999998653211000000000 00000000000
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
. ........+..++..+.+++.+||+.||++|||+.|++++|+.+..+..
T Consensus 257 ~---~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 306 (327)
T 3lxl_A 257 L---EEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR 306 (327)
T ss_dssp H---HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred h---hcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 0 0001111233567789999999999999999999999999999865443
No 117
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.2e-41 Score=363.46 Aligned_cols=263 Identities=25% Similarity=0.445 Sum_probs=201.9
Q ss_pred ccCCCCceeeeccceEEEEEEEC--CC--cEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeec-CCeeEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR--DG--MEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSN-EEFKAL 600 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~--~~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 600 (824)
..|++.+.||+|+||.||+|++. ++ ..||||.++... ....+.+.+|+.++++++||||+++++++.+ ++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 34677789999999999999864 22 468999886443 3456778999999999999999999998754 567899
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++......+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 169 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 245 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245 (373)
T ss_dssp EEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeecccccccccc
Confidence 99999999999999877777899999999999999999999 999999999999999999999999999999866433
Q ss_pred CCc--cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 681 DQS--MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 681 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
... .......+|+.|+|||.+.+..++.++|||||||++|||+| |.+||......+ ....+....
T Consensus 246 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~--~~~~~~~~~---------- 313 (373)
T 3c1x_A 246 EFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD--ITVYLLQGR---------- 313 (373)
T ss_dssp ------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC--HHHHHHTTC----------
T ss_pred ccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH--HHHHHHcCC----------
Confidence 221 12234457889999999998899999999999999999999 566665532221 111111100
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRN 812 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 812 (824)
....+..++..+.+++.+||..||++|||+.|++++|+++..++..+
T Consensus 314 --------~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~ 360 (373)
T 3c1x_A 314 --------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 360 (373)
T ss_dssp --------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred --------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence 01112345677999999999999999999999999999998876644
No 118
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=4e-40 Score=362.04 Aligned_cols=272 Identities=19% Similarity=0.265 Sum_probs=207.0
Q ss_pred hccCCCCceeeec--cceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRG--GFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G--~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+| +||.||+|+.. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 4679999999999 99999999876 69999999997653 2335678889999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 040845 601 VLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~ 679 (824)
||||+++|+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||.+.....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~ 180 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMIS 180 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence 999999999999997652 46899999999999999999999 99999999999999999999999999999875532
Q ss_pred CCCc-----cccccccccccccCccCcCC--CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc-
Q 040845 680 EDQS-----MTQTQTLATIGYMAPEYGRE--GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST- 751 (824)
Q Consensus 680 ~~~~-----~~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~- 751 (824)
.... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....+.....+ ....+...
T Consensus 181 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~-~~~~~~~~~ 259 (389)
T 3gni_B 181 HGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKL-NGTVPCLLD 259 (389)
T ss_dssp TTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC-----------
T ss_pred ccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHh-cCCCCcccc
Confidence 2111 11223468999999999887 578999999999999999999999997643322211111 10000000
Q ss_pred -----hhh-----------------c---cccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 752 -----MEV-----------------V---DANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 752 -----~~~-----------------~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.+. . ..............+..++..+.+|+.+||+.||++|||++|++++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 260 TSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred ccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 000 0 0000000000111233567789999999999999999999999976
No 119
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=358.64 Aligned_cols=250 Identities=25% Similarity=0.325 Sum_probs=204.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367999999999999999999865 48899999987542 33456788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.+|.+||+|||+|.......
T Consensus 94 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 169 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET 169 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC
Confidence 99999999999998755 6899999999999999999999 9999999999999999999999999999998764322
Q ss_pred CccccccccccccccCccCcCC---CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 682 QSMTQTQTLATIGYMAPEYGRE---GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
......||+.|+|||++.. ..++.++||||+||++|||++|+.||....... ......... ..
T Consensus 170 ---~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~--~~~~~~~~~---------~~ 235 (384)
T 4fr4_A 170 ---QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS--SKEIVHTFE---------TT 235 (384)
T ss_dssp ---CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC--HHHHHHHHH---------HC
T ss_pred ---ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc--HHHHHHHHh---------hc
Confidence 2344569999999999864 458999999999999999999999997532211 111111000 00
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCC-HHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRIN-AKEIVA 800 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-~~evl~ 800 (824)
. ...+..++..+.+++.+||+.||++||+ ++++.+
T Consensus 236 ~-------~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~ 271 (384)
T 4fr4_A 236 V-------VTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQN 271 (384)
T ss_dssp C-------CCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred c-------cCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence 0 0011234667899999999999999998 666654
No 120
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=349.19 Aligned_cols=257 Identities=29% Similarity=0.410 Sum_probs=202.0
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|++. ++.||||++.. ....+.+.+|++++++++||||+++++++.+ ..++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcC
Confidence 357889999999999999999986 88999999864 3455778999999999999999999999874 478999999
Q ss_pred CCCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc-EEEeecccccccCCCCC
Q 040845 606 PHGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV-AHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 606 ~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~-~kl~Dfg~a~~~~~~~~ 682 (824)
++|+|.+++.... ..+++..++.++.|+++|++|||+....+|+||||||+||+++.++. +||+|||++......
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 9999999998654 24788999999999999999999211189999999999999998886 799999999765322
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.....||+.|+|||.+.+..++.++||||||+++|||++|+.||...................
T Consensus 160 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~-------------- 222 (307)
T 2eva_A 160 ---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTR-------------- 222 (307)
T ss_dssp --------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCC--------------
T ss_pred ---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCC--------------
Confidence 123458999999999999899999999999999999999999997633222111111110000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
...+..++..+.+++.+||+.||++|||+.|++++|+.+.+.+.
T Consensus 223 ----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 266 (307)
T 2eva_A 223 ----PPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFP 266 (307)
T ss_dssp ----CCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCC
T ss_pred ----CCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhcc
Confidence 00112345678999999999999999999999999999876553
No 121
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=2.4e-40 Score=353.11 Aligned_cols=272 Identities=24% Similarity=0.395 Sum_probs=213.1
Q ss_pred CCCCceeeeccceEEEEEEEC-----CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeec--CCeeEE
Q 040845 529 FSENNLIGRGGFGSVYKARIR-----DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSN--EEFKAL 600 (824)
Q Consensus 529 ~~~~~~lg~G~~g~V~~~~~~-----~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 600 (824)
|++.+.||+|+||+||+|.++ +++.||||+++.... ...+.+.+|++++++++||||+++++++.+ ....++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 388999999999999998753 588999999976532 345678999999999999999999999977 467899
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++.... +++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 113 v~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187 (318)
T ss_dssp EECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred EEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence 999999999999997654 899999999999999999999 999999999999999999999999999999877543
Q ss_pred CCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCC-cchhhcccc
Q 040845 681 DQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPI-STMEVVDAN 758 (824)
Q Consensus 681 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 758 (824)
... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.||............+....... ...+.....
T Consensus 188 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (318)
T 3lxp_A 188 HEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERG 267 (318)
T ss_dssp CSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred ccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcc
Confidence 322 223345578889999999988899999999999999999999999875322111110000000000 000011100
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.....+..++..+.+++.+||+.||++|||+.|+++.|+++.+++..
T Consensus 268 ------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 268 ------ERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp ------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred ------cCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 11112335677899999999999999999999999999999887754
No 122
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=1.8e-40 Score=357.38 Aligned_cols=246 Identities=22% Similarity=0.251 Sum_probs=206.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 367899999999999999999875 58999999987542 23456788899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++|+|.+++...+ .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~- 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR- 194 (350)
T ss_dssp EECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-
T ss_pred EcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC-
Confidence 99999999999998765 6899999999999999999999 999999999999999999999999999999876432
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.....
T Consensus 195 ----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~-~~~~~i~~~~~-------------- 255 (350)
T 1rdq_E 195 ----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI-QIYEKIVSGKV-------------- 255 (350)
T ss_dssp ----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCC--------------
T ss_pred ----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH-HHHHHHHcCCC--------------
Confidence 12346899999999999999999999999999999999999999753211 11111111100
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRIN-----AKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-----~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++||+ ++|+++|
T Consensus 256 ------~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h 294 (350)
T 1rdq_E 256 ------RFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294 (350)
T ss_dssp ------CCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred ------CCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence 011234667899999999999999998 8888765
No 123
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.8e-40 Score=347.43 Aligned_cols=265 Identities=23% Similarity=0.387 Sum_probs=215.6
Q ss_pred hccCCCCc-eeeeccceEEEEEEEC---CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENN-LIGRGGFGSVYKARIR---DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|.+.+ .||+|+||.||+|.+. ++..||||+++... ....+.+.+|+++++.++||||+++++++ ..+..++
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 35566666 9999999999999864 57889999997643 23456788999999999999999999999 4556899
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++++|.+++......+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~ 163 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGAD 163 (287)
T ss_dssp EEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTC
T ss_pred EEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccC
Confidence 99999999999999876667999999999999999999999 999999999999999999999999999999876533
Q ss_pred CCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 681 DQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 681 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... .......+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+....
T Consensus 164 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~~~~----------- 230 (287)
T 1u59_A 164 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQGK----------- 230 (287)
T ss_dssp SCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHHTTC-----------
T ss_pred cceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHhcCC-----------
Confidence 322 12233456889999999988889999999999999999999 99998763221 1111111100
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccccC
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRNVG 814 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~~ 814 (824)
....+..++..+.+++.+||..||++||++.|++++|+++..+......
T Consensus 231 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~ 279 (287)
T 1u59_A 231 -------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVE 279 (287)
T ss_dssp -------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCS
T ss_pred -------cCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCccc
Confidence 0011224567899999999999999999999999999999887766543
No 124
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2.2e-40 Score=356.25 Aligned_cols=255 Identities=22% Similarity=0.294 Sum_probs=204.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|+.+ +++.||||+++... ....+.+.+|..+++++ +||||+++++++.+....++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 367899999999999999999876 58999999997653 22345678899999988 89999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++...+ .+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 88 v~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 999999999999998755 6899999999999999999999 999999999999999999999999999999854322
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcc---hhhhhhhhhCCCcchhhccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM---TLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 757 (824)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+. ........ .+...
T Consensus 164 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~-------~i~~~ 234 (345)
T 3a8x_A 164 G--DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ-------VILEK 234 (345)
T ss_dssp T--CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHH-------HHHHC
T ss_pred C--CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHH-------HHHcC
Confidence 2 123345799999999999999999999999999999999999999975321110 00000000 00000
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCH------HHHHHH
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINA------KEIVAK 801 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~------~evl~~ 801 (824)
. ...+..++..+.+++.+||+.||++||++ .|+++|
T Consensus 235 ~--------~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~h 276 (345)
T 3a8x_A 235 Q--------IRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGH 276 (345)
T ss_dssp C--------CCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTS
T ss_pred C--------CCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcC
Confidence 0 00122356678999999999999999996 566654
No 125
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=360.70 Aligned_cols=248 Identities=21% Similarity=0.322 Sum_probs=200.4
Q ss_pred CCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEeccCCCC
Q 040845 531 ENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYMPHGS 609 (824)
Q Consensus 531 ~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~ 609 (824)
..+.||+|+||.||+|+.. +|+.||+|+++.......+.+.+|++++++++||||+++++++.+.+..++||||+++++
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~ 172 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE 172 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence 3568999999999999864 589999999986655566789999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee--CCCCcEEEeecccccccCCCCCccccc
Q 040845 610 LEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL--DDNMVAHLSDFGIAKLLTGEDQSMTQT 687 (824)
Q Consensus 610 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill--~~~~~~kl~Dfg~a~~~~~~~~~~~~~ 687 (824)
|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++..+..... ..
T Consensus 173 L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~ 246 (373)
T 2x4f_A 173 LFDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LK 246 (373)
T ss_dssp EHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---cc
Confidence 99999876667899999999999999999999 9999999999999999 6778999999999987643322 22
Q ss_pred cccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhh
Q 040845 688 QTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHF 767 (824)
Q Consensus 688 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (824)
...||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+........ .
T Consensus 247 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~~~~~~~----------------~ 309 (373)
T 2x4f_A 247 VNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILACRWDLE----------------D 309 (373)
T ss_dssp CCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHHTCCCSC----------------S
T ss_pred cccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHhccCCCC----------------h
Confidence 346899999999999889999999999999999999999999763221 11122221111100 0
Q ss_pred hhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 768 VAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 768 ~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.....++..+.+++.+||+.||++|||+.|++++
T Consensus 310 ~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~h 343 (373)
T 2x4f_A 310 EEFQDISEEAKEFISKLLIKEKSWRISASEALKH 343 (373)
T ss_dssp GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0112346678999999999999999999999984
No 126
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=3.3e-40 Score=343.89 Aligned_cols=252 Identities=25% Similarity=0.405 Sum_probs=206.3
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecC--CeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE--EFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+++ ++.||||++.... ....+.+.+|+.++++++||||+++++++.+. ...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 467899999999999999999986 8999999987553 23456788999999999999999999999877 788999
Q ss_pred EeccCCCCHHHHhhhCCC-CCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 602 LEYMPHGSLEKYLHSSNY-SLDIFQRLNIMIDVASALEYLHFGYSAP--VIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
|||+++|+|.+++..... .+++.+++.++.|++.|++||| +.+ |+||||||+||+++.++.++++|||++....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 999999999999987653 5899999999999999999999 888 9999999999999999999999999876432
Q ss_pred CCCCccccccccccccccCccCcCCCCCCc---cchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVST---NGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVV 755 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~---~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (824)
. ....+|+.|+|||.+.+..++. ++||||+|+++|||++|+.||......+... .......
T Consensus 165 ~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~-~~~~~~~-------- 228 (271)
T 3kmu_A 165 S-------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGM-KVALEGL-------- 228 (271)
T ss_dssp C-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHH-HHHHSCC--------
T ss_pred c-------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHH-HHHhcCC--------
Confidence 1 2345889999999987665444 7999999999999999999997632221111 1110000
Q ss_pred cccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 756 DANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
....+..++..+.+++.+||+.||++|||++|+++.|+++.+
T Consensus 229 ----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 229 ----------RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp ----------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred ----------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 001112356679999999999999999999999999998743
No 127
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=3.3e-40 Score=354.86 Aligned_cols=251 Identities=24% Similarity=0.366 Sum_probs=199.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC-------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE------- 596 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------- 596 (824)
.++|++.+.||+|+||.||+|+++ +|+.||||+++... ....+.+.+|++++++++||||+++++++.+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 467999999999999999999876 69999999997543 334577899999999999999999999985543
Q ss_pred --------------------------------------------------eeEEEEeccCCCCHHHHhhhCC--CCCCHH
Q 040845 597 --------------------------------------------------FKALVLEYMPHGSLEKYLHSSN--YSLDIF 624 (824)
Q Consensus 597 --------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~--~~~~~~ 624 (824)
..++||||+++++|.+++.... ...++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 3789999999999999998754 345667
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc----------ccccccccccc
Q 040845 625 QRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS----------MTQTQTLATIG 694 (824)
Q Consensus 625 ~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~----------~~~~~~~~~~~ 694 (824)
.++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++........ .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 78999999999999999 999999999999999999999999999999877543221 12234569999
Q ss_pred ccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHH
Q 040845 695 YMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCV 774 (824)
Q Consensus 695 y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (824)
|+|||.+.+..++.++||||+||++|||++|..|+..... ....... . ........++
T Consensus 242 y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~----~~~~~~~--------------~----~~~~~~~~~~ 299 (332)
T 3qd2_B 242 YMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVR----IITDVRN--------------L----KFPLLFTQKY 299 (332)
T ss_dssp GSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHT--------------T----CCCHHHHHHC
T ss_pred ccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHH----HHHHhhc--------------c----CCCcccccCC
Confidence 9999999988999999999999999999998776432110 0000000 0 0001123445
Q ss_pred HHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 775 SFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 775 ~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
+.+.+++.+||+.||++|||+.|++++
T Consensus 300 ~~~~~li~~~l~~~p~~Rps~~~~l~~ 326 (332)
T 3qd2_B 300 PQEHMMVQDMLSPSPTERPEATDIIEN 326 (332)
T ss_dssp HHHHHHHHHHHCSSGGGSCCHHHHHHS
T ss_pred hhHHHHHHHHccCCCCcCCCHHHHhhc
Confidence 677899999999999999999999874
No 128
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=365.09 Aligned_cols=261 Identities=23% Similarity=0.292 Sum_probs=208.9
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecC
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE 595 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 595 (824)
.+.....++|++.+.||+|+||.||+|+.+ +|+.||||+++... ....+.+.+|..++..++||||+++++++.++
T Consensus 54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~ 133 (412)
T 2vd5_A 54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDE 133 (412)
T ss_dssp HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECS
T ss_pred hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC
Confidence 344445688999999999999999999875 69999999997532 23445688999999999999999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
+..|+||||+++|+|.+++...+..+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 134 ~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~ 210 (412)
T 2vd5_A 134 NYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCL 210 (412)
T ss_dssp SEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence 9999999999999999999876657999999999999999999999 9999999999999999999999999999998
Q ss_pred ccCCCCCccccccccccccccCccCcC-------CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCC
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGR-------EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLP 748 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~-------~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 748 (824)
....... .......||+.|+|||++. ...++.++||||+||++|||++|+.||......+ ....+.....
T Consensus 211 ~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~~~- 287 (412)
T 2vd5_A 211 KLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE-TYGKIVHYKE- 287 (412)
T ss_dssp ECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTHHH-
T ss_pred eccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH-HHHHHHhccc-
Confidence 7643322 2223457999999999886 4568999999999999999999999997632111 1111111000
Q ss_pred CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCC---CCHHHHHHH
Q 040845 749 ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQR---INAKEIVAK 801 (824)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---pt~~evl~~ 801 (824)
....+ ..+..++.++.+++.+||. +|++| |+++|+++|
T Consensus 288 ----------~~~~p----~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~H 328 (412)
T 2vd5_A 288 ----------HLSLP----LVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTH 328 (412)
T ss_dssp ----------HCCCC--------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTS
T ss_pred ----------CcCCC----ccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcC
Confidence 00000 0112356779999999999 99998 589998775
No 129
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=8e-41 Score=377.79 Aligned_cols=256 Identities=27% Similarity=0.437 Sum_probs=213.7
Q ss_pred hccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
..+|++.+.||+|+||.||+|+++. +..||||+++.. ....+.+.+|+.++++++||||+++++++.+....++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 4678889999999999999999875 889999998754 33467899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 605 MPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 605 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++...... .
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 373 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-Y 373 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-E
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-e
Confidence 99999999998643 56899999999999999999999 9999999999999999999999999999998764322 2
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.......++..|+|||.+....++.++|||||||++|||+| |..||......+ ....+...
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~--~~~~~~~~---------------- 435 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKD---------------- 435 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTT----------------
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 22334456789999999988899999999999999999999 888987632211 11111110
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHH
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIR 806 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 806 (824)
.+...+..++..+.++|.+||+.||++|||+.|+++.|+++.
T Consensus 436 --~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~ 477 (495)
T 1opk_A 436 --YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF 477 (495)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence 111123356778999999999999999999999999998764
No 130
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=6.3e-40 Score=346.90 Aligned_cols=263 Identities=26% Similarity=0.446 Sum_probs=208.0
Q ss_pred hccCCCCceeeeccceEEEEEEECC----CcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeee-ecCCeeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD----GMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSC-SNEEFKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~ 599 (824)
..+|++.+.||+|+||.||+|++.+ +..||+|.+..... ...+.+.+|+.++++++||||+++++++ ..+...+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3568888999999999999998643 23689998865432 3456788999999999999999999986 4566889
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~ 679 (824)
+||||+++|+|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence 999999999999999876667899999999999999999999 99999999999999999999999999999987643
Q ss_pred CCC--ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCC-CCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 680 EDQ--SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKK-PTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 680 ~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
... ........+|+.|+|||.+.+..++.++||||+|+++|||++|+. ||......+ .........
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~-~~~~~~~~~---------- 249 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD-ITVYLLQGR---------- 249 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT-HHHHHHTTC----------
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH-HHHHHhcCC----------
Confidence 321 122334567889999999988899999999999999999999554 544322111 111111110
Q ss_pred ccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 757 ANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
....+..++..+.+++.+||+.||++|||+.|+++.|+++.+++..
T Consensus 250 ---------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 250 ---------RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp ---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred ---------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 0011123456789999999999999999999999999999876654
No 131
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=5e-40 Score=350.41 Aligned_cols=269 Identities=25% Similarity=0.345 Sum_probs=192.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|..+ +|+.||||+++.... ...+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 468999999999999999999865 589999999875532 334678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCC-----CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 604 YMPHGSLEKYLHSSN-----YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
|++ |+|.+++.... ..+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 997 59999986532 35889999999999999999999 9999999999999999999999999999998764
Q ss_pred CCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCC--Ccch-hh
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLP--ISTM-EV 754 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~-~~ 754 (824)
.... ......+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+ ........... .... ..
T Consensus 160 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~ 236 (317)
T 2pmi_A 160 IPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEE-QLKLIFDIMGTPNESLWPSV 236 (317)
T ss_dssp SCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCTTTCGGG
T ss_pred CCcc--cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCChhHhhhh
Confidence 3221 22345689999999998764 68999999999999999999999997632211 11111111110 0000 00
Q ss_pred -----ccccccCc------hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 -----VDANLLSQ------EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 -----~~~~~~~~------~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..... .......+..++..+.+++.+||+.||++|||++|++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~h 294 (317)
T 2pmi_A 237 TKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHH 294 (317)
T ss_dssp GGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred hhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCC
Confidence 00000000 000111112456779999999999999999999999875
No 132
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=344.89 Aligned_cols=250 Identities=23% Similarity=0.401 Sum_probs=187.0
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 46799999999999999999986 468999999986542 22346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++......+++.+++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||.+.......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 9999999999999877667999999999999999999999 8999999999999999999999999999998764222
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
. ......+|+.|+|||.+.+..++.++||||+|+++|||++|+.||......+. .... . ...
T Consensus 167 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~----~--------~~~--- 228 (278)
T 3cok_A 167 E--KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT-LNKV----V--------LAD--- 228 (278)
T ss_dssp ---------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC------C----C--------SSC---
T ss_pred C--cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH-HHHH----h--------hcc---
Confidence 1 12234689999999999988899999999999999999999999875322110 0000 0 000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+..++..+.+++.+||+.||++|||+.|++++
T Consensus 229 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 263 (278)
T 3cok_A 229 -----YEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDH 263 (278)
T ss_dssp -----CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred -----cCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcC
Confidence 00112345678999999999999999999999874
No 133
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=351.22 Aligned_cols=250 Identities=26% Similarity=0.351 Sum_probs=197.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--------------------------chhhhHHHHHHHHh
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--------------------------RAFKSFDVECAMMK 578 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 578 (824)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 468999999999999999999865 589999999865421 12356889999999
Q ss_pred cCCCCcceeEEeeeec--CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCC
Q 040845 579 SIRHRNLVKVISSCSN--EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPS 656 (824)
Q Consensus 579 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~ 656 (824)
+++||||+++++++.+ ....++||||+++++|.+++.. ..+++.++..++.|+++||+||| +.+|+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence 9999999999999986 5688999999999999887643 36899999999999999999999 899999999999
Q ss_pred CeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCC---CCccchHHHHHHHHHHHHhCCCCCcccc
Q 040845 657 NVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQ---VSTNGDVYSFGIMLMETFTRKKPTDELF 733 (824)
Q Consensus 657 Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~DvwslG~~l~el~tg~~p~~~~~ 733 (824)
||+++.++.+||+|||++........ ......||+.|+|||.+.+.. ++.++||||+||++|||++|+.||....
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~ 244 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER 244 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred HEEECCCCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc
Confidence 99999999999999999987643322 223456999999999987655 4788999999999999999999997532
Q ss_pred cCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 734 NGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ......+.... .. ......++..+.+++.+||+.||++|||+.|++++
T Consensus 245 ~--~~~~~~~~~~~------------~~-----~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h 293 (298)
T 2zv2_A 245 I--MCLHSKIKSQA------------LE-----FPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH 293 (298)
T ss_dssp H--HHHHHHHHHCC------------CC-----CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred H--HHHHHHHhccc------------CC-----CCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence 1 11111111000 00 00012345678999999999999999999999865
No 134
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.2e-40 Score=356.71 Aligned_cols=249 Identities=20% Similarity=0.260 Sum_probs=205.3
Q ss_pred hccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccc---cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQC---GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|+.+. |+.||||+++... ....+.+..|..++..+ +||+|+++++++.+.+..|+
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 98 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF 98 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence 5789999999999999999998764 7899999997542 23456778899999988 79999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++...+ .+++.+++.++.|++.||+||| +.+|+||||||+||+++.+|.+||+|||+|+.....
T Consensus 99 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~ 174 (353)
T 2i0e_A 99 VMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWD 174 (353)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccC
Confidence 999999999999998755 6899999999999999999999 999999999999999999999999999999854322
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.....
T Consensus 175 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~-~~~~~i~~~~~------------- 238 (353)
T 2i0e_A 175 G--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED-ELFQSIMEHNV------------- 238 (353)
T ss_dssp T--CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHCCC-------------
T ss_pred C--cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH-HHHHHHHhCCC-------------
Confidence 1 1233456999999999999999999999999999999999999999753211 11111111000
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCC-----HHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRIN-----AKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt-----~~evl~~ 801 (824)
..+..++..+.+++.+||..||++||+ ++|+++|
T Consensus 239 -------~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h 277 (353)
T 2i0e_A 239 -------AYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 277 (353)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred -------CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence 011234567899999999999999995 5777765
No 135
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=1.5e-40 Score=350.03 Aligned_cols=253 Identities=24% Similarity=0.366 Sum_probs=206.3
Q ss_pred hccCCCCceeeeccceEEEEEEECC-C-------cEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-G-------MEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 597 (824)
.++|.+.+.||+|+||.||+|+... + ..||+|++........+.+.+|+.+++.++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 4678999999999999999997653 3 5799999977666667889999999999999999999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc--------EEEe
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV--------AHLS 669 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~--------~kl~ 669 (824)
.++||||+++|+|.+++......+++..++.++.|+++||+||| +.+|+||||||+||+++.++. +||+
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeec
Confidence 99999999999999999887656899999999999999999999 999999999999999998887 9999
Q ss_pred ecccccccCCCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCC
Q 040845 670 DFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLP 748 (824)
Q Consensus 670 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 748 (824)
|||.+..... .....+++.|+|||.+.+ ..++.++||||+|+++|||++|+.|+........... .......
T Consensus 164 Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~-~~~~~~~ 236 (289)
T 4fvq_A 164 DPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQ-FYEDRHQ 236 (289)
T ss_dssp CCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHH-HHHTTCC
T ss_pred cCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHH-HhhccCC
Confidence 9999875421 123457889999999887 6789999999999999999997665543222111111 1111000
Q ss_pred CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 749 ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
.+..++..+.+++.+||+.||++|||+.|++++|+++..+
T Consensus 237 --------------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 237 --------------------LPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp --------------------CCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC--
T ss_pred --------------------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence 0011234578899999999999999999999999988653
No 136
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=355.94 Aligned_cols=253 Identities=23% Similarity=0.383 Sum_probs=199.0
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCC--CcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRH--RNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|+.+++.++| +||+++++++.++...++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 35799999999999999999998889999999987543 2334678899999999986 9999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
||+ .+++|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++ ++.+||+|||++.......
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 995 5789999998765 7899999999999999999999 89999999999999997 6789999999998765444
Q ss_pred CccccccccccccccCccCcCC-----------CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc
Q 040845 682 QSMTQTQTLATIGYMAPEYGRE-----------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS 750 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 750 (824)
.........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.............+......
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~- 240 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI- 240 (343)
T ss_dssp --------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCC-
T ss_pred ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCccc-
Confidence 3333445679999999998754 6789999999999999999999999976332211111111110000
Q ss_pred chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 751 TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
..+..++..+.+++.+||+.||++|||+.|++++-
T Consensus 241 -----------------~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp 275 (343)
T 3dbq_A 241 -----------------EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP 275 (343)
T ss_dssp -----------------CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred -----------------CCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCc
Confidence 00112245688999999999999999999999874
No 137
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2.3e-40 Score=354.33 Aligned_cols=249 Identities=23% Similarity=0.312 Sum_probs=196.2
Q ss_pred hccCCCCceeeeccceEEEEEEE----CCCcEEEEEEeeccc----cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI----RDGMEVAVKVFNLQC----GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 597 (824)
.++|++.+.||+|+||.||+|+. .+|+.||+|+++... ......+.+|+.+++.++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46899999999999999999986 468999999987542 2334567889999999999999999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
.++||||+++++|.+++...+ .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999998655 6889999999999999999999 899999999999999999999999999999754
Q ss_pred CCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 678 TGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 678 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
.... .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ..........
T Consensus 172 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~---------- 238 (327)
T 3a62_A 172 IHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK-TIDKILKCKL---------- 238 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHTCC----------
T ss_pred ccCC--ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCC----------
Confidence 3221 12234568999999999998899999999999999999999999997632111 1111111100
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRI-----NAKEIVAK 801 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 801 (824)
..+..++..+.+++.+||..||++|| ++.|+++|
T Consensus 239 ----------~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~h 277 (327)
T 3a62_A 239 ----------NLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAH 277 (327)
T ss_dssp ----------CCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHS
T ss_pred ----------CCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcC
Confidence 01123456789999999999999999 78888775
No 138
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=355.65 Aligned_cols=252 Identities=21% Similarity=0.294 Sum_probs=192.4
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
..++|++.+.||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++.+....++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3567999999999999999999876 47899999987542 34668889999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCCC
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg~a~~~~~~ 680 (824)
|+++|+|.+++.... .+++.+++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+++.....
T Consensus 129 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 204 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ 204 (349)
T ss_dssp CCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC--------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc
Confidence 999999999997655 6899999999999999999999 899999999999999975 899999999999865422
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
. ......||+.|+|||++.+..++.++|||||||++|||++|+.||............+....... .
T Consensus 205 ~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~-----~----- 271 (349)
T 2w4o_A 205 V---LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYF-----I----- 271 (349)
T ss_dssp -----------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCC-----C-----
T ss_pred c---ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCcc-----C-----
Confidence 1 22345689999999999998999999999999999999999999976332221222221111100 0
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
......++..+.+++.+||..||++|||+.|++++
T Consensus 272 ------~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 306 (349)
T 2w4o_A 272 ------SPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQH 306 (349)
T ss_dssp ------TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred ------CchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00112345678999999999999999999999874
No 139
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=3.6e-40 Score=351.33 Aligned_cols=263 Identities=25% Similarity=0.430 Sum_probs=200.9
Q ss_pred hhccCCCCceeeeccceEEEEEEEC----CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC--
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR----DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE-- 596 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-- 596 (824)
..++|.+.+.||+|+||.||+|++. ++..||||+++... ....+.+.+|+.++++++||||+++++++.+..
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3577899999999999999999754 24589999987543 234567889999999999999999999997654
Q ss_pred ---eeEEEEeccCCCCHHHHhhh-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEE
Q 040845 597 ---FKALVLEYMPHGSLEKYLHS-----SNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHL 668 (824)
Q Consensus 597 ---~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl 668 (824)
..++||||+++|+|.+++.. ....+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEE
Confidence 45899999999999999853 2356899999999999999999999 999999999999999999999999
Q ss_pred eecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhC
Q 040845 669 SDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 669 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
+|||++................+++.|+|||.+.+..++.++||||||+++|||++ |..||......+ ....+....
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~~~ 266 (313)
T 3brb_A 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE--MYDYLLHGH 266 (313)
T ss_dssp CSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTTC
T ss_pred eecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH--HHHHHHcCC
Confidence 99999987654433333344557889999999998899999999999999999999 888886532221 111111000
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
....+..++..+.+++.+||..||++|||+.+++++|+++.+++.
T Consensus 267 ------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp 311 (313)
T 3brb_A 267 ------------------RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP 311 (313)
T ss_dssp ------------------CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred ------------------CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 001122456679999999999999999999999999999987654
No 140
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3.1e-40 Score=352.83 Aligned_cols=249 Identities=20% Similarity=0.273 Sum_probs=182.6
Q ss_pred CceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeeecCCeeEEEEeccCCCC
Q 040845 532 NNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCSNEEFKALVLEYMPHGS 609 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 609 (824)
.+.||+|+||.||+|..+ +++.||||++... ....+.+|+.+++.++ ||||+++++++.++...++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999875 5899999998643 3466788999999997 9999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cEEEeecccccccCCCCCcccc
Q 040845 610 LEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM---VAHLSDFGIAKLLTGEDQSMTQ 686 (824)
Q Consensus 610 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~kl~Dfg~a~~~~~~~~~~~~ 686 (824)
|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||++....... ...
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~ 166 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN--QPL 166 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC--Ccc
Confidence 999998765 7899999999999999999999 99999999999999997665 89999999998654322 222
Q ss_pred ccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCc--chhhhhhhhhCCCcchhhccccccCchh
Q 040845 687 TQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGE--MTLKHWVNDCLPISTMEVVDANLLSQED 764 (824)
Q Consensus 687 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (824)
....+|+.|+|||++.+..++.++||||+||++|||++|+.||....... ........... .....
T Consensus 167 ~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~------------~~~~~ 234 (325)
T 3kn6_A 167 KTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIK------------KGDFS 234 (325)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHT------------TTCCC
T ss_pred cccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHH------------cCCCC
Confidence 34568999999999999999999999999999999999999997633211 01111111110 00001
Q ss_pred hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 765 IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 765 ~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||..||++|||++|++++
T Consensus 235 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h 271 (325)
T 3kn6_A 235 FEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN 271 (325)
T ss_dssp CCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTC
T ss_pred CCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcC
Confidence 1111223467789999999999999999999998754
No 141
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=9.7e-40 Score=341.51 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=207.8
Q ss_pred hccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||.||+|.... +..||+|++........+.+.+|+++++.++||||+++++++.+....++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 4679999999999999999998764 779999999876666678899999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
+++++|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||++.......
T Consensus 88 ~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 88 CTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp CCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 99999999987755 6899999999999999999999 9999999999999999 788999999999998764332
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
......+|+.|+|||.+.+ .++.++||||+|+++|||++|+.||......+ ....+......
T Consensus 164 ---~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~------------- 225 (277)
T 3f3z_A 164 ---MMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPTDSE-VMLKIREGTFT------------- 225 (277)
T ss_dssp ---CBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC-------------
T ss_pred ---chhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhCCCC-------------
Confidence 2234568999999998865 48999999999999999999999997632211 11111111000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||+.||++|||+.|++++
T Consensus 226 ---~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h 262 (277)
T 3f3z_A 226 ---FPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262 (277)
T ss_dssp ---CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred ---CCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0001112456778999999999999999999999875
No 142
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.3e-40 Score=354.71 Aligned_cols=272 Identities=26% Similarity=0.440 Sum_probs=215.9
Q ss_pred hccCCCCceeeeccceEEEEEEE-----CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCC--ee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-----RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE--FK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~ 598 (824)
.++|++.+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 35688999999999999999984 358999999997765666778999999999999999999999986643 78
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||+++++|.+++......+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 9999999999999999887667999999999999999999999 8999999999999999999999999999998765
Q ss_pred CCCCcc-ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc-----ch
Q 040845 679 GEDQSM-TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS-----TM 752 (824)
Q Consensus 679 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~-----~~ 752 (824)
...... ......++..|+|||.+.+..++.++||||+|+++|||+||..||...... ............ ..
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 273 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE---FMRMIGNDKQGQMIVFHLI 273 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHH---HHHHHCTTCCTHHHHHHHH
T ss_pred ccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHH---HHHhhccccchhhhHHHHH
Confidence 433221 123345778899999998888999999999999999999999987642110 000000000000 00
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
+.+... .....+..++..+.+++.+||..||++|||+.|+++.|+++++++
T Consensus 274 ~~~~~~------~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 274 ELLKNN------GRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHHHTT------CCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHhhcC------CCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 000000 011123356778999999999999999999999999999998765
No 143
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=2.6e-40 Score=358.57 Aligned_cols=253 Identities=23% Similarity=0.287 Sum_probs=196.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ...+.+.+|+.+++.++||||+++++++.+....++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 468999999999999999999876 68999999987542 3346788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc--EEEeecccccccCCCCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV--AHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~Dfg~a~~~~~~~~ 682 (824)
+++|+|.+++...+ .+++.+++.++.|++.||+||| +.+|+||||||+||+++.++. +||+|||+++.....
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~-- 171 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-- 171 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc--
Confidence 99999999997655 6899999999999999999999 999999999999999987765 999999999743222
Q ss_pred ccccccccccccccCccCcCCCCCCcc-chHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTN-GDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~-~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.......||+.|+|||++.+..++.+ +||||+||++|||++|+.||........ ............ .
T Consensus 172 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~-~~~~~~~~~~~~--------~-- 239 (361)
T 3uc3_A 172 -SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRD-YRKTIQRILSVK--------Y-- 239 (361)
T ss_dssp ----------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCC-HHHHHHHHHTTC--------C--
T ss_pred -CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHH-HHHHHHHHhcCC--------C--
Confidence 12234569999999999988777655 8999999999999999999976433221 111111111100 0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......++..+.+++.+||+.||++|||+.|+++|
T Consensus 240 ----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 240 ----SIPDDIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp ----CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred ----CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 000111245678899999999999999999999987
No 144
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=3.8e-40 Score=344.99 Aligned_cols=248 Identities=25% Similarity=0.366 Sum_probs=203.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|... ++..||||++.... ......+.+|+.+++.++||||+++++++.+....++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 578999999999999999999865 47799999986542 22346688999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~- 162 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS- 162 (279)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc-
Confidence 99999999999998765 6899999999999999999999 999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
......+++.|+|||.+.+..++.++||||+|+++|||++|+.||......+ ........
T Consensus 163 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~---------------- 222 (279)
T 3fdn_A 163 ---RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE-TYKRISRV---------------- 222 (279)
T ss_dssp --------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHHT----------------
T ss_pred ---cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH-HHHHHHhC----------------
Confidence 2234568999999999999899999999999999999999999987532111 00110000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
....+..++..+.+++.+||+.||++|||+.|++++-
T Consensus 223 ----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~ 259 (279)
T 3fdn_A 223 ----EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHP 259 (279)
T ss_dssp ----CCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCH
T ss_pred ----CCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCc
Confidence 0001123456688999999999999999999999874
No 145
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=1.3e-40 Score=357.99 Aligned_cols=265 Identities=23% Similarity=0.377 Sum_probs=215.6
Q ss_pred hhccCCCCceeeeccceEEEEEEECC------CcEEEEEEeecccc-chhhhHHHHHHHHhcC-CCCcceeEEeeeecCC
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRD------GMEVAVKVFNLQCG-RAFKSFDVECAMMKSI-RHRNLVKVISSCSNEE 596 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 596 (824)
..++|++.+.||+|+||.||+|.+.. +..||+|.+..... ...+.+.+|+.+++.+ +||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 35789999999999999999998653 24799999875432 3456788999999999 8999999999999999
Q ss_pred eeEEEEeccCCCCHHHHhhhC-------------CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC
Q 040845 597 FKALVLEYMPHGSLEKYLHSS-------------NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN 663 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~ 663 (824)
..++||||+++|+|.+++... ...+++..++.++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~ 200 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNG 200 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGG
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCC
Confidence 999999999999999998753 235789999999999999999999 8999999999999999999
Q ss_pred CcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhh
Q 040845 664 MVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHW 742 (824)
Q Consensus 664 ~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~ 742 (824)
+.+||+|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |..||....... .....
T Consensus 201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-~~~~~ 279 (333)
T 2i1m_A 201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNS-KFYKL 279 (333)
T ss_dssp GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSH-HHHHH
T ss_pred CeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhH-HHHHH
Confidence 9999999999987654443333344567889999999988899999999999999999999 888987643221 11111
Q ss_pred hhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 743 VNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
+..... ...+..++..+.+++.+||+.||++|||+.|++++|+++.....+
T Consensus 280 ~~~~~~------------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 330 (333)
T 2i1m_A 280 VKDGYQ------------------MAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDRR 330 (333)
T ss_dssp HHHTCC------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC------------------CCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhhc
Confidence 111110 001123456789999999999999999999999999998776544
No 146
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=3.7e-40 Score=345.40 Aligned_cols=258 Identities=25% Similarity=0.416 Sum_probs=207.6
Q ss_pred hccCCCCceeeeccceEEEEEEECC----CcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD----GMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|.+.+.||+|+||.||+|++.+ +..||||.+.... ....+.+.+|+.+++.++||||+++++++.++ ..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCEE
Confidence 4688999999999999999998643 3469999987553 23457788999999999999999999998754 5689
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++++|.+++......+++..+..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 166 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE 166 (281)
T ss_dssp EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence 99999999999999877667999999999999999999999 999999999999999999999999999999876433
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. .......+++.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+.....
T Consensus 167 ~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~--~~~~~~~~~~----------- 232 (281)
T 3cc6_A 167 DY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD--VIGVLEKGDR----------- 232 (281)
T ss_dssp -------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG--HHHHHHHTCC-----------
T ss_pred cc-cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH--HHHHHhcCCC-----------
Confidence 22 22233457889999999988889999999999999999998 999987532221 1111111000
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
...+..++..+.+++.+||..||++|||+.|++++|+++.+.
T Consensus 233 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 233 -------LPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------CCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 011123456789999999999999999999999999998764
No 147
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1e-39 Score=341.23 Aligned_cols=255 Identities=24% Similarity=0.344 Sum_probs=210.7
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 3468999999999999999999875 68999999987543 334577889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||+++++|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+........
T Consensus 85 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (276)
T 2yex_A 85 EYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (276)
T ss_dssp ECCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred EecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence 9999999999987654 6899999999999999999999 89999999999999999999999999999987643332
Q ss_pred ccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
........|++.|+|||.+.+..+ +.++||||+|+++|||++|+.||............|......
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~------------- 227 (276)
T 2yex_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTY------------- 227 (276)
T ss_dssp ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTT-------------
T ss_pred hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccc-------------
Confidence 223344568999999999987665 789999999999999999999997644333333333221100
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
......++..+.+++.+||+.||++|||+.|++++
T Consensus 228 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~ 262 (276)
T 2yex_A 228 -----LNPWKKIDSAPLALLHKILVENPSARITIPDIKKD 262 (276)
T ss_dssp -----STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTC
T ss_pred -----cCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcC
Confidence 00112345678899999999999999999999875
No 148
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=4.5e-41 Score=359.93 Aligned_cols=266 Identities=24% Similarity=0.425 Sum_probs=214.6
Q ss_pred HHHHhhccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeee
Q 040845 521 ELFQATDKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCS 593 (824)
Q Consensus 521 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 593 (824)
++....++|++.+.||+|+||.||+|++. +++.||||.+..... .....+.+|+.+++.++||||+++++++.
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 98 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 98 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence 33445688999999999999999999764 367899999875432 33456889999999999999999999999
Q ss_pred cCCeeEEEEeccCCCCHHHHhhhCC---------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC
Q 040845 594 NEEFKALVLEYMPHGSLEKYLHSSN---------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM 664 (824)
Q Consensus 594 ~~~~~~lv~e~~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~ 664 (824)
+.+..++||||+++|+|.+++...+ ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~ 175 (322)
T 1p4o_A 99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDF 175 (322)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTC
T ss_pred cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCC
Confidence 9999999999999999999987532 35689999999999999999999 89999999999999999999
Q ss_pred cEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhh
Q 040845 665 VAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWV 743 (824)
Q Consensus 665 ~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~ 743 (824)
.+||+|||++................+|+.|+|||.+.+..++.++||||+|+++|||++ |+.||...... .....+
T Consensus 176 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~~~~~ 253 (322)
T 1p4o_A 176 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE--QVLRFV 253 (322)
T ss_dssp CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH--HHHHHH
T ss_pred eEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHH--HHHHHH
Confidence 999999999986644333333344457889999999988889999999999999999999 88888653211 111111
Q ss_pred hhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 744 NDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
... .. ...+..++..+.+++.+||+.||++|||+.|++++|+++.+..
T Consensus 254 ~~~-----------~~-------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~ 301 (322)
T 1p4o_A 254 MEG-----------GL-------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301 (322)
T ss_dssp HTT-----------CC-------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTT
T ss_pred HcC-----------Cc-------CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccC
Confidence 100 00 0011245667899999999999999999999999998875433
No 149
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=4.5e-39 Score=347.56 Aligned_cols=277 Identities=23% Similarity=0.372 Sum_probs=216.0
Q ss_pred cHHHHHHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhc--CCCCcceeEEeeeecC
Q 040845 518 SYLELFQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKS--IRHRNLVKVISSCSNE 595 (824)
Q Consensus 518 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~ 595 (824)
++..-....++|++.+.||+|+||.||+|++. |+.||||++... ....+.+|+++++. ++||||+++++++...
T Consensus 33 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~ 108 (342)
T 1b6c_B 33 PLLVQRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKD 108 (342)
T ss_dssp CHHHHHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECC
T ss_pred ceeecccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeeccc
Confidence 33444556689999999999999999999985 899999998643 34567788888887 7899999999999877
Q ss_pred C----eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeEecCCCCCCeeeCCCCcE
Q 040845 596 E----FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY-----SAPVIHCDLKPSNVLLDDNMVA 666 (824)
Q Consensus 596 ~----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~ 666 (824)
. ..++||||+++|+|.+++... .+++.+++.++.|++.|++|||... +.+|+||||||+||+++.++.+
T Consensus 109 ~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~ 186 (342)
T 1b6c_B 109 NGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC 186 (342)
T ss_dssp CSSCCCEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCE
T ss_pred CCccceeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCE
Confidence 5 789999999999999999764 5899999999999999999999321 4789999999999999999999
Q ss_pred EEeecccccccCCCCCcc--ccccccccccccCccCcCCC------CCCccchHHHHHHHHHHHHhC----------CCC
Q 040845 667 HLSDFGIAKLLTGEDQSM--TQTQTLATIGYMAPEYGREG------QVSTNGDVYSFGIMLMETFTR----------KKP 728 (824)
Q Consensus 667 kl~Dfg~a~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslG~~l~el~tg----------~~p 728 (824)
||+|||++.......... ......||+.|+|||.+.+. .++.++|||||||++|||+|| ..|
T Consensus 187 kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p 266 (342)
T 1b6c_B 187 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 266 (342)
T ss_dssp EECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCT
T ss_pred EEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccC
Confidence 999999998765433221 22345689999999998765 234789999999999999999 667
Q ss_pred CcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 729 TDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
|......+.....+........ .............++..+.+++.+||+.||++|||+.|++++|+++.++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 267 YYDLVPSDPSVEEMRKVVCEQK---------LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp TTTTSCSSCCHHHHHHHHTTSC---------CCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ccccCcCcccHHHHHHHHHHHH---------hCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 7654433333333322211110 0000011112236778899999999999999999999999999999765
Q ss_pred h
Q 040845 809 L 809 (824)
Q Consensus 809 ~ 809 (824)
.
T Consensus 338 ~ 338 (342)
T 1b6c_B 338 E 338 (342)
T ss_dssp T
T ss_pred h
Confidence 3
No 150
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=365.52 Aligned_cols=347 Identities=21% Similarity=0.176 Sum_probs=218.0
Q ss_pred ceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccC
Q 040845 72 KAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYD 151 (824)
Q Consensus 72 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 151 (824)
+.++.++++++.+|..+ .+++++|+|++|+|++..+..|..+++|++|+|++|.+++..|.+|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666666666543 25778888888888877777888888888888888888877788888888888888888
Q ss_pred CcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCC
Q 040845 152 NNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGN 231 (824)
Q Consensus 152 n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 231 (824)
|+++.++.. .|.++++|++|+|++|.+.++.+..|.. ..+|++|++++|.+.+..+..|.++++|+.|+|++|
T Consensus 90 n~l~~~~~~-----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 90 NRLKLIPLG-----VFTGLSNLTKLDISENKIVILLDYMFQD--LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp SCCCSCCTT-----SSTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred CcCCccCcc-----cccCCCCCCEEECCCCccccCChhHccc--cccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence 888776542 3677788888888888776554443322 223444444444444444445555555555555555
Q ss_pred ccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc
Q 040845 232 KLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN 311 (824)
Q Consensus 232 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 311 (824)
++++..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|...+. +|..
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------------~~~~ 219 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-----------------------MTPN 219 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE-----------------------ECTT
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc-----------------------cCcc
Confidence 55544444455555555555555555544444444444444444444443333 3433
Q ss_pred ccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCcccccccccc
Q 040845 312 FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLK 391 (824)
Q Consensus 312 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 391 (824)
.....+|+.|++++|.++...+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 33344555555555555543334566666777777777777766666677777777777777777766677777777777
Q ss_pred EEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCCCccccccccccCCccccCCC
Q 040845 392 SLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 392 ~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
.|+|++|+|++..+..|..+++|+.|++++|+|+|.++....+.......+.++...|.+|
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 7777777777655666677777777777777777765432222223334556666677655
No 151
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.8e-40 Score=346.67 Aligned_cols=262 Identities=24% Similarity=0.415 Sum_probs=209.7
Q ss_pred cCCCCceeeeccceEEEEEEECC----CcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCCee-EEE
Q 040845 528 KFSENNLIGRGGFGSVYKARIRD----GMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK-ALV 601 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lv 601 (824)
.|...+.||+|+||+||+|++.+ +..||+|.+..... ...+.+.+|+.+++.++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 45667899999999999998532 23799999865432 3456788999999999999999999999766554 899
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+.+|+|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 9999999999999886678899999999999999999999 8999999999999999999999999999998654322
Q ss_pred C--ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 682 Q--SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 682 ~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
. ........+|+.|+|||.+.+..++.++||||+|+++|||++|+.|+....... .....+.....
T Consensus 179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~-~~~~~~~~~~~----------- 246 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPF-DLTHFLAQGRR----------- 246 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGG-GHHHHHHTTCC-----------
T ss_pred ccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHH-HHHHHhhcCCC-----------
Confidence 1 122234557889999999999999999999999999999999766654322221 11111111110
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
...+..++..+.+++.+||+.||++|||+.|+++.|+++.+++..
T Consensus 247 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 247 -------LPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp -------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred -------CCCCccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 011223456789999999999999999999999999999887654
No 152
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=4e-40 Score=344.83 Aligned_cols=260 Identities=25% Similarity=0.428 Sum_probs=211.8
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEecc
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 605 (824)
.++|++.+.||+|+||.||+|...++..||||++.... ...+.+.+|+++++.++||||+++++++.+ +..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEecC
Confidence 46889999999999999999999888899999987543 345778999999999999999999999874 4578999999
Q ss_pred CCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 606 PHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 606 ~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
++++|.+++.... ..+++.++..++.|++.|++||| +.+|+||||||+||++++++.+||+|||.+........ .
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~ 165 (279)
T 1qpc_A 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-T 165 (279)
T ss_dssp TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-E
T ss_pred CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-c
Confidence 9999999997543 36899999999999999999999 99999999999999999999999999999987653322 2
Q ss_pred ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCch
Q 040845 685 TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQE 763 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (824)
......++..|+|||.+.++.++.++||||+|+++|||++ |+.||......+ ....+....
T Consensus 166 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~--~~~~~~~~~---------------- 227 (279)
T 1qpc_A 166 AREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPE--VIQNLERGY---------------- 227 (279)
T ss_dssp CCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTC----------------
T ss_pred cccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHH--HHHHHhccc----------------
Confidence 2233456789999999988889999999999999999999 899986532211 111111000
Q ss_pred hhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 764 DIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 764 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
....+..++..+.+++.+||..||++|||+.++++.|+++..+...
T Consensus 228 --~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 273 (279)
T 1qpc_A 228 --RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEG 273 (279)
T ss_dssp --CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred --CCCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccC
Confidence 0011124566799999999999999999999999999998776443
No 153
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=348.43 Aligned_cols=245 Identities=22% Similarity=0.242 Sum_probs=195.6
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 602 (824)
++|++.+.||+|+||+||+|+.. +|+.||||++..... ........|+..+.++ +||||+++++++.+.+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 57999999999999999999876 699999999864422 2233344455555554 8999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||+ +++|.+++...+..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~- 211 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG- 211 (311)
T ss_dssp ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-
Confidence 999 67999998877778999999999999999999999 8999999999999999999999999999998754322
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
......||++|+|||++.+ .++.++|||||||++|||++|..|+... .....+....
T Consensus 212 --~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~----~~~~~~~~~~---------------- 268 (311)
T 3p1a_A 212 --AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG----EGWQQLRQGY---------------- 268 (311)
T ss_dssp -----CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH----HHHHHHTTTC----------------
T ss_pred --CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc----cHHHHHhccC----------------
Confidence 2234458999999998875 7899999999999999999997765431 1111111100
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.....+..++..+.+++.+||+.||++|||++|++++
T Consensus 269 --~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 305 (311)
T 3p1a_A 269 --LPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLAL 305 (311)
T ss_dssp --CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred --CCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhC
Confidence 0011223456789999999999999999999999874
No 154
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=1.2e-40 Score=354.45 Aligned_cols=260 Identities=25% Similarity=0.406 Sum_probs=198.6
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeecccc---chhhhHHHHHHHHhcCCCCcceeEEeeeecCCe----
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCG---RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEF---- 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 597 (824)
.++|++.+.||+|+||.||+|++ .+++.||||+++.... .....+.+|+.++++++||||+++++++.....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46899999999999999999986 4689999999976432 234578899999999999999999999876543
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
.++||||+++++|.+++...+ .+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..+
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 489999999999999998765 6899999999999999999999 899999999999999999999999999999876
Q ss_pred CCCCCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 678 TGEDQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 678 ~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
...... .......||+.|+|||.+.+..++.++||||+|+++|||++|+.||......+.. ......
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~-~~~~~~----------- 234 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVA-YQHVRE----------- 234 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH-HHHHHC-----------
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHH-HHHhcC-----------
Confidence 543222 2223456899999999999889999999999999999999999999763221111 111110
Q ss_pred ccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHH-HHHHHHH
Q 040845 757 ANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIV-AKLLKIR 806 (824)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl-~~L~~~~ 806 (824)
...........++..+.+++.+||+.||++||++.+++ +.+.+..
T Consensus 235 -----~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~ 280 (311)
T 3ork_A 235 -----DPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH 280 (311)
T ss_dssp -----CCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred -----CCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence 00001111224567799999999999999999665554 5555544
No 155
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.5e-39 Score=347.64 Aligned_cols=252 Identities=22% Similarity=0.336 Sum_probs=207.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc------hhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR------AFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||.||+|+.. +|+.||||++...... ..+.+.+|+.+++.++||||+++++++.+....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 467999999999999999999876 5899999998754321 356789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM----VAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~Dfg~a 674 (824)
++||||+++++|.+++.... .+++..++.++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 99999999999999997654 7899999999999999999999 89999999999999999888 7999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
....... ......||+.|+|||.+.+..++.++||||+|+++|||++|+.||......+ ....+.....
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~------- 235 (321)
T 2a2a_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQE-TLANITSVSY------- 235 (321)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHH-HHHHHHTTCC-------
T ss_pred eecCccc---cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHhccc-------
Confidence 8764332 2234568999999999998899999999999999999999999996532111 1111111000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.........++..+.+++.+||..||++|||+.|++++
T Consensus 236 ---------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~h 273 (321)
T 2a2a_A 236 ---------DFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273 (321)
T ss_dssp ---------CCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHS
T ss_pred ---------ccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 00011123456678999999999999999999999875
No 156
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.9e-40 Score=352.31 Aligned_cols=260 Identities=27% Similarity=0.477 Sum_probs=205.4
Q ss_pred ccCCCCceeeeccceEEEEEEECC-----CcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIRD-----GMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.+|.+.+.||+|+||.||+|.+.. +..||||+++.... .....+.+|+.+++.++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 567778999999999999998653 24699999875432 334578899999999999999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 200 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence 99999999999999877668999999999999999999999 899999999999999999999999999999876433
Q ss_pred CCc-cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 681 DQS-MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 681 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... .......+|+.|+|||.+.+..++.++||||||+++|||++ |+.||......+ ....+....
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~~~~~~~~----------- 267 (333)
T 1mqb_A 201 PEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHE--VMKAINDGF----------- 267 (333)
T ss_dssp ----------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHTTC-----------
T ss_pred cccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHH--HHHHHHCCC-----------
Confidence 221 12223446788999999988899999999999999999999 999986532211 111111000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
+...+..++..+.+++.+||+.||++||++.|++++|+++.+..
T Consensus 268 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 268 -------RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp -------CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred -------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 00112245667899999999999999999999999999987643
No 157
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.5e-40 Score=348.31 Aligned_cols=263 Identities=22% Similarity=0.272 Sum_probs=202.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc---chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG---RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 578999999999999999999875 589999999865422 2346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++.... .+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 113 ~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 188 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDEK 188 (309)
T ss_dssp EECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred EEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence 99999999999998755 6899999999999999999999 8999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
. .......+++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+....+.
T Consensus 189 ~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~------------ 253 (309)
T 2h34_A 189 L-TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHINQAIPR------------ 253 (309)
T ss_dssp ---------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHHSCCCC------------
T ss_pred c-ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhccCCCC------------
Confidence 1 2223456899999999999989999999999999999999999999763211 111111110000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCC-CHHHHHHHHHHHHHhhcc
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRI-NAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-t~~evl~~L~~~~~~~~~ 811 (824)
....+..++..+.+++.+||+.||++|| +++++++.|+++.+....
T Consensus 254 ----~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~ 300 (309)
T 2h34_A 254 ----PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATADQ 300 (309)
T ss_dssp ----GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC----
T ss_pred ----ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 0011224566789999999999999999 999999999887654433
No 158
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=352.65 Aligned_cols=268 Identities=21% Similarity=0.278 Sum_probs=200.0
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc-hhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR-AFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
++|.+.+.||+|+||+||+|+.. +++.||||++...... ....+.+|+.+++.++||||+++++++.+++..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57899999999999999999876 6899999998654322 223455799999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
++ |+|.+++...+..+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....... .
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~ 155 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT--K 155 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--c
Confidence 97 5999999887777999999999999999999999 9999999999999999999999999999998653222 2
Q ss_pred ccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc---chhhcccc--
Q 040845 685 TQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS---TMEVVDAN-- 758 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 758 (824)
......+|+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ ............. ........
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (324)
T 3mtl_A 156 TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFRILGTPTEETWPGILSNEEF 234 (324)
T ss_dssp -------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCChHhchhhhcchhh
Confidence 2334568999999998876 568999999999999999999999997632221 1111111111000 00000000
Q ss_pred ----cc-CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 759 ----LL-SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 759 ----~~-~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.. ............++..+.+++.+||+.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 282 (324)
T 3mtl_A 235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKH 282 (324)
T ss_dssp HHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred cccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcC
Confidence 00 00000111223456778999999999999999999999874
No 159
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=8.7e-40 Score=347.85 Aligned_cols=265 Identities=23% Similarity=0.352 Sum_probs=203.1
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 46899999999999999999986 468999999987532 23456788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 602 LEYMPHGSLEKYLHS---SNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
|||+++++|.+++.. ....+++..++.++.|++.|++||| +.+++||||||+||+++.++.+||+|||++....
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999864 3356899999999999999999999 9999999999999999999999999999998654
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.... ......+++.|+|||.+.+..++.++||||||+++|||++|+.||.............+....
T Consensus 188 ~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~----------- 254 (310)
T 2wqm_A 188 SKTT--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCD----------- 254 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTC-----------
T ss_pred CCCc--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhccc-----------
Confidence 3221 223346899999999999989999999999999999999999998753222111111111100
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRN 812 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 812 (824)
... .....++..+.+++.+||..||++|||+.|+++.|+++.......
T Consensus 255 -~~~-----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~ 302 (310)
T 2wqm_A 255 -YPP-----LPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS 302 (310)
T ss_dssp -SCC-----CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred -CCC-----CcccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence 000 001234567899999999999999999999999999998876544
No 160
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=352.98 Aligned_cols=253 Identities=16% Similarity=0.150 Sum_probs=207.9
Q ss_pred hccCCCCceeeeccceEEEEEE------ECCCcEEEEEEeeccccchhhhHHHHHHHHhcCC---CCcceeEEeeeecCC
Q 040845 526 TDKFSENNLIGRGGFGSVYKAR------IRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR---HRNLVKVISSCSNEE 596 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~ 596 (824)
.++|.+.+.||+|+||+||+|. ..+++.||||+++.. ....+..|+++++.++ |+||+++++++...+
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~ 140 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN 140 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence 4679999999999999999994 345889999998643 3456778888888887 999999999999999
Q ss_pred eeEEEEeccCCCCHHHHhhh----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC----------
Q 040845 597 FKALVLEYMPHGSLEKYLHS----SNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---------- 662 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---------- 662 (824)
..++||||+++|+|.+++.. ....+++.+++.++.|++.||+||| +.+|+||||||+|||++.
T Consensus 141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~ 217 (365)
T 3e7e_A 141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDD 217 (365)
T ss_dssp CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC-----
T ss_pred CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCcccccc
Confidence 99999999999999999975 3357999999999999999999999 999999999999999998
Q ss_pred -CCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhh
Q 040845 663 -NMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKH 741 (824)
Q Consensus 663 -~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~ 741 (824)
++.+||+|||+|+.+.............||++|+|||++.+..++.++|||||||++|||+||+.||.....+......
T Consensus 218 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~ 297 (365)
T 3e7e_A 218 LSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEG 297 (365)
T ss_dssp -CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEEECS
T ss_pred ccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCceeech
Confidence 8999999999998664333334445567999999999999999999999999999999999999998654332111000
Q ss_pred hhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCC-CCHHHHHHHHHHHHHhh
Q 040845 742 WVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQR-INAKEIVAKLLKIRDSL 809 (824)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-pt~~evl~~L~~~~~~~ 809 (824)
. ... . .....+.+++..|++.+|.+| |+++++.+.|+++.++.
T Consensus 298 ----------------~-~~~----~----~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 298 ----------------L-FRR----L----PHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp ----------------C-CTT----C----SSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred ----------------h-ccc----c----CcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 0 000 0 113456789999999999998 58888999998887653
No 161
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=5.7e-40 Score=350.52 Aligned_cols=261 Identities=22% Similarity=0.284 Sum_probs=208.2
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeee----cCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCS----NEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|+. .+++.||||++........+.+.+|+++++.++||||+++++++. .....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 46799999999999999999987 568999999987665566778899999999999999999999986 3457889
Q ss_pred EEeccCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 601 VLEYMPHGSLEKYLHS---SNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
||||+++|+|.+++.. ....+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+||+|||.+...
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999999876 3457899999999999999999999 899999999999999999999999999998765
Q ss_pred CCCCCc-------cccccccccccccCccCcCCCC---CCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC
Q 040845 678 TGEDQS-------MTQTQTLATIGYMAPEYGREGQ---VSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 678 ~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~---~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
...... .......||+.|+|||.+.+.. ++.++||||||+++|||++|+.||..................
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 264 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQL 264 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC-
T ss_pred ccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhccC
Confidence 321111 0112345799999999987553 689999999999999999999999754322222221111100
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
.......++..+.+++.+||+.||++|||+.|++++|+++..
T Consensus 265 ------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~ 306 (317)
T 2buj_A 265 ------------------SIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQP 306 (317)
T ss_dssp -------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCC
T ss_pred ------------------CCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCC
Confidence 001112345679999999999999999999999999988753
No 162
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=4.3e-40 Score=346.37 Aligned_cols=258 Identities=27% Similarity=0.439 Sum_probs=214.9
Q ss_pred hhccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
..++|++.+.||+|+||.||+|.+.. +..||+|++... ....+.+.+|++++++++||||+++++++.++...++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 45789999999999999999998764 889999998754 3456778999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 604 YMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
|+++++|.+++.... ..+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+.......
T Consensus 90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT- 165 (288)
T ss_dssp CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-
T ss_pred cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc-
Confidence 999999999998644 46899999999999999999999 8999999999999999999999999999998764332
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
........+|+.|+|||.+.+..++.++||||+|+++|+|++ |..||....... ....+....
T Consensus 166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~--~~~~~~~~~-------------- 229 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ--VYELLEKDY-------------- 229 (288)
T ss_dssp SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG--HHHHHHTTC--------------
T ss_pred cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhccC--------------
Confidence 223344557889999999988899999999999999999999 888987532211 111111100
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
....+..++..+.+++.+||..||++|||+.|+++.|+++.+
T Consensus 230 ----~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 230 ----RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp ----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ----CCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 011122456779999999999999999999999999999865
No 163
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.3e-40 Score=353.73 Aligned_cols=260 Identities=23% Similarity=0.315 Sum_probs=203.4
Q ss_pred HHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc-----ccchhhhHHHHHHHHhcCCCCcceeEEeeeecC
Q 040845 522 LFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ-----CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNE 595 (824)
Q Consensus 522 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 595 (824)
+....++|++.+.||+|+||.||+|... +++.||+|++... .....+.+.+|+.++++++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 3456788999999999999999999864 5889999998654 234557889999999999999999999999999
Q ss_pred CeeEEEEeccCCCCHHHHhhhC---------------------------------------CCCCCHHHHHHHHHHHHHH
Q 040845 596 EFKALVLEYMPHGSLEKYLHSS---------------------------------------NYSLDIFQRLNIMIDVASA 636 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~~ 636 (824)
+..++||||+++|+|.+++... ...+++..++.++.|++.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998521 1123567788999999999
Q ss_pred HHHhhcCCCCCeEecCCCCCCeeeCCCC--cEEEeecccccccCCCCC--ccccccccccccccCccCcCC--CCCCccc
Q 040845 637 LEYLHFGYSAPVIHCDLKPSNVLLDDNM--VAHLSDFGIAKLLTGEDQ--SMTQTQTLATIGYMAPEYGRE--GQVSTNG 710 (824)
Q Consensus 637 l~~LH~~~~~~ivH~Dlk~~Nill~~~~--~~kl~Dfg~a~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~--~~~~~~~ 710 (824)
|+||| +.+|+||||||+||+++.++ .+||+|||++..+..... ........||+.|+|||.+.+ ..++.++
T Consensus 181 l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 99999 89999999999999998776 899999999987643222 122345569999999998865 6789999
Q ss_pred hHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCC
Q 040845 711 DVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPE 790 (824)
Q Consensus 711 DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~ 790 (824)
|||||||++|||++|+.||......+ ........... ........++..+.+++.+||+.||+
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~li~~~l~~~p~ 320 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDAD-TISQVLNKKLC----------------FENPNYNVLSPLARDLLSNLLNRNVD 320 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC----------------TTSGGGGGSCHHHHHHHHHHSCSCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHhcccc----------------cCCcccccCCHHHHHHHHHHcCCChh
Confidence 99999999999999999997632221 11111111000 00011123466789999999999999
Q ss_pred CCCCHHHHHHH
Q 040845 791 QRINAKEIVAK 801 (824)
Q Consensus 791 ~Rpt~~evl~~ 801 (824)
+|||+.|++++
T Consensus 321 ~Rps~~~~l~h 331 (345)
T 3hko_A 321 ERFDAMRALQH 331 (345)
T ss_dssp TSCCHHHHHHS
T ss_pred HCCCHHHHhcC
Confidence 99999999875
No 164
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5.5e-40 Score=366.22 Aligned_cols=248 Identities=25% Similarity=0.369 Sum_probs=206.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|.+.+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 367899999999999999999876 69999999997542 23356788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++|+|.+++...+ .+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 95 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp EECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 99999999999997654 6899999999999999999999 9999999999999999999999999999998764332
Q ss_pred CccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
......||+.|+|||++.+..+ +.++||||+||++|||++|+.||....... ..........
T Consensus 171 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~-~~~~i~~~~~------------- 233 (476)
T 2y94_A 171 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT-LFKKICDGIF------------- 233 (476)
T ss_dssp ---CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH-HHHHHHTTCC-------------
T ss_pred ---cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH-HHHHHhcCCc-------------
Confidence 2233569999999999988765 789999999999999999999997632111 1111111000
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|||+.|++++
T Consensus 234 -------~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~h 267 (476)
T 2y94_A 234 -------YTPQYLNPSVISLLKHMLQVDPMKRATIKDIREH 267 (476)
T ss_dssp -------CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred -------CCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhC
Confidence 0112245668999999999999999999999985
No 165
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=8.8e-40 Score=358.07 Aligned_cols=252 Identities=23% Similarity=0.381 Sum_probs=199.0
Q ss_pred ccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCC--CCcceeEEeeeecCCeeEEEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIR--HRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 602 (824)
.+|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|+.++++++ ||||+++++++..++..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 4599999999999999999998889999999987543 234567889999999996 599999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
| +.+++|.+++.... .+++.++..++.||+.||+||| +.+|+||||||+||+++ ++.+||+|||+++.+.....
T Consensus 136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~ 209 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209 (390)
T ss_dssp E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence 9 55889999998765 7889999999999999999999 99999999999999995 58999999999987654433
Q ss_pred ccccccccccccccCccCcCC-----------CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc
Q 040845 683 SMTQTQTLATIGYMAPEYGRE-----------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST 751 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 751 (824)
........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.........+..........
T Consensus 210 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~-- 287 (390)
T 2zmd_A 210 SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI-- 287 (390)
T ss_dssp ----CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCC--
T ss_pred cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccC--
Confidence 333345679999999998764 4689999999999999999999999975332211111111110000
Q ss_pred hhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 752 MEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
..+..++..+.+++.+||..||++|||+.|++++-
T Consensus 288 ----------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp 322 (390)
T 2zmd_A 288 ----------------EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP 322 (390)
T ss_dssp ----------------CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred ----------------CCCccchHHHHHHHHHHcccChhhCCCHHHHhhCc
Confidence 00111245688999999999999999999998763
No 166
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=2.3e-39 Score=342.24 Aligned_cols=266 Identities=19% Similarity=0.235 Sum_probs=209.6
Q ss_pred hhccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeee-ecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSC-SNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||.||+|+. .+++.||||++... ...+.+.+|+.+++.++|++++..++.+ .+.+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVK--TKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccc--ccchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999986 56899999987543 2345688899999999988877666655 6678889999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~~~ 679 (824)
||+ +++|.+++......+++.+++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++.....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999 89999999876668999999999999999999999 9999999999999999 7899999999999987654
Q ss_pred CCCc-----cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcc--hhhhhhhhhCCCcch
Q 040845 680 EDQS-----MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM--TLKHWVNDCLPISTM 752 (824)
Q Consensus 680 ~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~ 752 (824)
.... .......||+.|+|||.+.+..++.++||||+||++|||++|+.||........ ..........+
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~---- 236 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS---- 236 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH----
T ss_pred cccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhccccc----
Confidence 3321 122345689999999999999999999999999999999999999976432211 11111000000
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
. ........++..+.+++.+||+.||++|||++|+++.|+++.++...
T Consensus 237 --------~---~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~ 284 (296)
T 4hgt_A 237 --------T---PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp --------S---CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTC
T ss_pred --------c---hhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 0 00001123467899999999999999999999999999999876543
No 167
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=7.9e-40 Score=378.26 Aligned_cols=261 Identities=23% Similarity=0.388 Sum_probs=208.7
Q ss_pred CCCCc-eeeeccceEEEEEEEC---CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 529 FSENN-LIGRGGFGSVYKARIR---DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 529 ~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
+.+.+ .||+|+||.||+|.++ ++..||||+++... ....+.+.+|++++++++||||+++++++.. +..++|||
T Consensus 337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E 415 (613)
T 2ozo_A 337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVME 415 (613)
T ss_dssp EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEE
T ss_pred eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEE
Confidence 33334 7999999999999764 46789999997643 3356789999999999999999999999976 56899999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++|+|.+++......+++.++..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+++........
T Consensus 416 ~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~ 492 (613)
T 2ozo_A 416 MAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSY 492 (613)
T ss_dssp CCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----
T ss_pred eCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCce
Confidence 99999999999877767999999999999999999999 999999999999999999999999999999876433222
Q ss_pred -cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 684 -MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 684 -~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.......+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+ ....+...
T Consensus 493 ~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~--------------- 555 (613)
T 2ozo_A 493 YTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE--VMAFIEQG--------------- 555 (613)
T ss_dssp ---------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH--HHHHHHTT---------------
T ss_pred eeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--HHHHHHcC---------------
Confidence 12223346789999999998899999999999999999998 999997643221 11111110
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcccc
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRNV 813 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~~ 813 (824)
.+...+..++..+.++|.+||..||++||++.++++.|+.+..+.....
T Consensus 556 ---~~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~~ 604 (613)
T 2ozo_A 556 ---KRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV 604 (613)
T ss_dssp ---CCCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCSC
T ss_pred ---CCCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcccc
Confidence 0111233567889999999999999999999999999999887765543
No 168
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.2e-41 Score=356.92 Aligned_cols=267 Identities=25% Similarity=0.399 Sum_probs=191.0
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhc--CCCCcceeEEeeeecCC----eeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKS--IRHRNLVKVISSCSNEE----FKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~ 599 (824)
.++|.+.+.||+|+||.||+|++. ++.||||++... ....+..|.+++.. ++||||+++++++.... ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 368999999999999999999876 899999998643 34566778888887 79999999999998766 789
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----CCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY-----SAPVIHCDLKPSNVLLDDNMVAHLSDFGIA 674 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a 674 (824)
+||||+++|+|.+++... .+++.+++.++.|++.|++|||... +.+|+||||||+||+++.++.+||+|||++
T Consensus 78 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHC--CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 999999999999999765 4778889999999999999999322 579999999999999999999999999999
Q ss_pred cccCCCCCcc--ccccccccccccCccCcCCC------CCCccchHHHHHHHHHHHHhCC----------CCCcccccCc
Q 040845 675 KLLTGEDQSM--TQTQTLATIGYMAPEYGREG------QVSTNGDVYSFGIMLMETFTRK----------KPTDELFNGE 736 (824)
Q Consensus 675 ~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslG~~l~el~tg~----------~p~~~~~~~~ 736 (824)
.......... ......||+.|+|||.+.+. .++.++|||||||++|||++|. .||.......
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~ 235 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD 235 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-C
T ss_pred eeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCC
Confidence 7664433221 12334699999999998766 4457899999999999999994 4444322211
Q ss_pred chhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 737 MTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
.....+. ..+.................++..+.+++.+||+.||++|||+.|+++.|+++.+
T Consensus 236 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~ 297 (303)
T 3gxj_A 236 PSVEEMR---------KVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQ 297 (303)
T ss_dssp CCCC-CH---------HHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CC
T ss_pred ccHHHHH---------HHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhh
Confidence 1111111 1111111111111112233677889999999999999999999999999987754
No 169
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=352.76 Aligned_cols=243 Identities=25% Similarity=0.348 Sum_probs=204.4
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--------chhhhHHHHHHHHhcCCCCcceeEEeeeecC
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--------RAFKSFDVECAMMKSIRHRNLVKVISSCSNE 595 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 595 (824)
..++|++.+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4578999999999999999999864 589999999875431 1344677899999999999999999999999
Q ss_pred CeeEEEEeccCCC-CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 040845 596 EFKALVLEYMPHG-SLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIA 674 (824)
Q Consensus 596 ~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a 674 (824)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccc
Confidence 9999999999777 9999998765 6899999999999999999999 899999999999999999999999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTME 753 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (824)
........ .....||+.|+|||++.+..+ +.++||||+||++|||++|+.||...... ...
T Consensus 178 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-------~~~-------- 239 (335)
T 3dls_A 178 AYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET-------VEA-------- 239 (335)
T ss_dssp EECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG-------TTT--------
T ss_pred eECCCCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH-------Hhh--------
Confidence 87643322 233568999999999988776 88999999999999999999999752110 000
Q ss_pred hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.. ..+..++..+.+++.+||+.||++|||+.|++++
T Consensus 240 ----~~--------~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 240 ----AI--------HPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ----CC--------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ----cc--------CCCcccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 00 0011245668999999999999999999999987
No 170
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.4e-40 Score=359.27 Aligned_cols=277 Identities=20% Similarity=0.301 Sum_probs=213.4
Q ss_pred hccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC--eeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE--FKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 601 (824)
.++|.+.+.||+|+||.||+|++.. |+.||||++.... ....+.+.+|++++++++||||+++++++.+.. ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 3679999999999999999998764 8999999997543 234567789999999999999999999997755 77999
Q ss_pred EeccCCCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----CCCCcEEEeeccccc
Q 040845 602 LEYMPHGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL----DDNMVAHLSDFGIAK 675 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl~Dfg~a~ 675 (824)
|||+++|+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999997644 34899999999999999999999 9999999999999999 778889999999998
Q ss_pred ccCCCCCccccccccccccccCccCcCC--------CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhh---hhhh
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGRE--------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLK---HWVN 744 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~---~~~~ 744 (824)
...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||........... ....
T Consensus 165 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~ 241 (396)
T 4eut_A 165 ELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIIT 241 (396)
T ss_dssp ECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHH
T ss_pred EccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhc
Confidence 764322 2234568999999998764 5678899999999999999999999976433222211 1111
Q ss_pred hhCCCcchhhccc-----cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 745 DCLPISTMEVVDA-----NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 745 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
...+......... .+.............++..+.+++.+||+.||++||++.|+++.++++.+.
T Consensus 242 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 242 GKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp SCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred CCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 1111110000000 000000111112246778899999999999999999999999999887653
No 171
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.6e-39 Score=341.22 Aligned_cols=252 Identities=21% Similarity=0.344 Sum_probs=206.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|+.++++++||||+++++++.++...++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 478999999999999999999875 58999999987553 234567889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecccccccCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV---AHLSDFGIAKLLTG 679 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg~a~~~~~ 679 (824)
||+++++|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||+++.++. +||+|||.+.....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 9999999999987665 6899999999999999999999 999999999999999986655 99999999986643
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. ......||+.|+|||.+.+..++.++||||+|+++|+|++|+.||......+ ............
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~---------- 226 (284)
T 3kk8_A 161 SE---AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR-LYAQIKAGAYDY---------- 226 (284)
T ss_dssp SC---BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCC----------
T ss_pred Cc---cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhH-HHHHHHhccccC----------
Confidence 22 2234568999999999999999999999999999999999999996532111 111111111000
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......++..+.+++.+||+.||++|||+.|++++
T Consensus 227 ------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 227 ------PSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp ------CTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred ------CchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 000112345678999999999999999999999986
No 172
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=7e-40 Score=359.80 Aligned_cols=270 Identities=22% Similarity=0.310 Sum_probs=195.6
Q ss_pred HhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc--ccchhhhHHHHHHHHhcCC-CCcceeEEeeeecC--Ce
Q 040845 524 QATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ--CGRAFKSFDVECAMMKSIR-HRNLVKVISSCSNE--EF 597 (824)
Q Consensus 524 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~--~~ 597 (824)
...++|++.+.||+|+||.||+|.+. +|+.||||++... .......+.+|+.+++.+. ||||+++++++..+ ..
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~ 85 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRD 85 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSC
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCE
Confidence 34678999999999999999999864 5899999998543 2234566778999999997 99999999999754 37
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
.|+||||++ ++|.+++... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+.+
T Consensus 86 ~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~ 159 (388)
T 3oz6_A 86 VYLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSF 159 (388)
T ss_dssp EEEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred EEEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence 899999997 5999999764 5889999999999999999999 999999999999999999999999999999876
Q ss_pred CCCCC-------------------ccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcc
Q 040845 678 TGEDQ-------------------SMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM 737 (824)
Q Consensus 678 ~~~~~-------------------~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~ 737 (824)
..... ....+...||++|+|||++.+ ..++.++||||+||++|||++|++||.+.... .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~ 238 (388)
T 3oz6_A 160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTM-N 238 (388)
T ss_dssp SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH-H
T ss_pred cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHH-H
Confidence 43111 112234579999999998876 67899999999999999999999999763211 1
Q ss_pred hhhhhhhhhCCCcchhhcc---cc------------------ccCch-------hhhhhhHHHHHHHHHHHHHHccccCC
Q 040845 738 TLKHWVNDCLPISTMEVVD---AN------------------LLSQE-------DIHFVAKEQCVSFVFNLALECTVESP 789 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~---~~------------------~~~~~-------~~~~~~~~~~~~~l~~l~~~cl~~dP 789 (824)
.+..+.... .....+... .. ..... ......+..++..+.+|+.+||+.||
T Consensus 239 ~~~~i~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP 317 (388)
T 3oz6_A 239 QLERIIGVI-DFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNP 317 (388)
T ss_dssp HHHHHHHHH-CCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHHhc-CCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCc
Confidence 111111111 100000000 00 00000 00000111456789999999999999
Q ss_pred CCCCCHHHHHHH
Q 040845 790 EQRINAKEIVAK 801 (824)
Q Consensus 790 ~~Rpt~~evl~~ 801 (824)
++|||++|+++|
T Consensus 318 ~~R~t~~e~l~H 329 (388)
T 3oz6_A 318 NKRISANDALKH 329 (388)
T ss_dssp GGSCCHHHHTTS
T ss_pred ccCCCHHHHhCC
Confidence 999999999987
No 173
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=347.20 Aligned_cols=269 Identities=24% Similarity=0.300 Sum_probs=201.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||+||+|+.. +|+.||||++..... ...+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVF 81 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEE
Confidence 367999999999999999999875 489999999865432 23466788999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||+++++|.+++.... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+........
T Consensus 82 e~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 157 (311)
T 4agu_A 82 EYCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD 157 (311)
T ss_dssp ECCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC----
T ss_pred EeCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc
Confidence 9999999998887654 6899999999999999999999 99999999999999999999999999999987643222
Q ss_pred ccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--chhhc----
Q 040845 683 SMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TMEVV---- 755 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 755 (824)
......+|+.|+|||.+.+ ..++.++||||+|+++|||++|+.||......+. ............ .....
T Consensus 158 --~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (311)
T 4agu_A 158 --YYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQ-LYLIRKTLGDLIPRHQQVFSTNQ 234 (311)
T ss_dssp ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH-HHHHHHHHCSCCHHHHHHHHTCG
T ss_pred --ccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHHHHhccccccccccccccc
Confidence 2234568999999998875 5689999999999999999999999976432211 111111000000 00000
Q ss_pred --cccccC---chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 756 --DANLLS---QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 756 --~~~~~~---~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...... ...........++..+.+++.+||+.||++|||++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 285 (311)
T 4agu_A 235 YFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH 285 (311)
T ss_dssp GGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTS
T ss_pred ccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence 000000 0000001112456779999999999999999999999875
No 174
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=4.3e-39 Score=340.15 Aligned_cols=265 Identities=19% Similarity=0.236 Sum_probs=212.7
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeee-ecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSC-SNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|+. .+|+.||||++.... ..+.+.+|+.+++.++|++++..+.++ .+....++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46899999999999999999986 569999999986543 345688999999999988866666655 66778899999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCC
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~~~~ 680 (824)
|+ +++|.+++......+++.+++.++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||++......
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99 89999999866668999999999999999999999 9999999999999999 48899999999999876543
Q ss_pred CCc-----cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCc--chhhhhhhhhCCCcchh
Q 040845 681 DQS-----MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGE--MTLKHWVNDCLPISTME 753 (824)
Q Consensus 681 ~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 753 (824)
... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||....... ............
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~----- 236 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS----- 236 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHH-----
T ss_pred ccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccC-----
Confidence 321 11234569999999999999999999999999999999999999998643221 111111110000
Q ss_pred hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 754 VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
. ........++..+.+++.+||+.||++|||+.|+++.|+++......
T Consensus 237 -------~---~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~ 284 (296)
T 3uzp_A 237 -------T---PIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF 284 (296)
T ss_dssp -------S---CHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred -------C---chHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence 0 00011134567899999999999999999999999999999876544
No 175
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=3.1e-40 Score=369.20 Aligned_cols=249 Identities=23% Similarity=0.291 Sum_probs=197.0
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc---ccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ---CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.. +|+.||||++... .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999865 5899999999754 233445677899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYS-APVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
|||+++|+|.+++.... .+++..+..++.|++.||+||| + .+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 99999999999997765 7899999999999999999999 7 89999999999999999999999999999854322
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..........
T Consensus 303 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~i~~~~~------------- 366 (446)
T 4ejn_A 303 G--ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK-LFELILMEEI------------- 366 (446)
T ss_dssp ------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC-------------
T ss_pred C--cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH-HHHHHHhCCC-------------
Confidence 2 22334679999999999999999999999999999999999999997532111 1111111000
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRI-----NAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|| +++|+++|
T Consensus 367 -------~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~h 405 (446)
T 4ejn_A 367 -------RFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405 (446)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred -------CCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhC
Confidence 01123456789999999999999999 99999875
No 176
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.5e-40 Score=349.42 Aligned_cols=266 Identities=22% Similarity=0.289 Sum_probs=201.1
Q ss_pred hccCCCC-ceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSEN-NLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.+.|++. +.||+|+||.||+|+.. +++.||||++........+.+.+|++++.++ +||||+++++++.+++..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3567774 78999999999999854 6899999999766555667889999999985 7999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecccccccCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV---AHLSDFGIAKLLTG 679 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg~a~~~~~ 679 (824)
||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||++.....
T Consensus 91 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred EcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 9999999999998765 6899999999999999999999 899999999999999998776 99999999976542
Q ss_pred CCCc-----cccccccccccccCccCcCC-----CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCC
Q 040845 680 EDQS-----MTQTQTLATIGYMAPEYGRE-----GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPI 749 (824)
Q Consensus 680 ~~~~-----~~~~~~~~~~~y~aPE~~~~-----~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 749 (824)
.... .......||+.|+|||++.. ..++.++||||+||++|||++|+.||......+.. |.......
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~---~~~~~~~~ 243 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCG---WDRGEACP 243 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSC---C----CCH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccccccccc---ccccccch
Confidence 2211 11223458999999998864 45889999999999999999999999764332211 10000000
Q ss_pred c----chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 750 S----TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 750 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ..+.+....... .......++..+.+++.+||..||++|||+.|++++
T Consensus 244 ~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 296 (316)
T 2ac3_A 244 ACQNMLFESIQEGKYEF---PDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQH 296 (316)
T ss_dssp HHHHHHHHHHHHCCCCC---CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred hHHHHHHHHHhccCccc---CchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence 0 000000000000 001112456779999999999999999999999875
No 177
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.5e-39 Score=353.79 Aligned_cols=277 Identities=24% Similarity=0.272 Sum_probs=210.0
Q ss_pred cccccHHHHHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCC-----CCccee
Q 040845 514 WRRFSYLELFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-----HRNLVK 587 (824)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~ 587 (824)
...+++.+.....++|++.+.||+|+||+||+|+.. +++.||||+++.. ....+.+..|+.+++.++ ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 334455555555789999999999999999999874 5899999998642 334566778999999997 999999
Q ss_pred EEeeeecCCeeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC----
Q 040845 588 VISSCSNEEFKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---- 662 (824)
Q Consensus 588 l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---- 662 (824)
+++++...+..++||||+ +++|.+++.... ..+++.++..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~ 176 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFE 176 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCC
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccc
Confidence 999999999999999999 889999998755 45899999999999999999999 999999999999999975
Q ss_pred ---------------------CCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHH
Q 040845 663 ---------------------NMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLME 721 (824)
Q Consensus 663 ---------------------~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~e 721 (824)
++.+||+|||+|....... ....||+.|+|||++.+..++.++||||+||++||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e 251 (360)
T 3llt_A 177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAE 251 (360)
T ss_dssp EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred ccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHH
Confidence 7899999999998643322 23468999999999999999999999999999999
Q ss_pred HHhCCCCCcccccCcchhhhhhhhhCCCcc-----------hhhcccccc----Cchhh-----------hhhhHHHHHH
Q 040845 722 TFTRKKPTDELFNGEMTLKHWVNDCLPIST-----------MEVVDANLL----SQEDI-----------HFVAKEQCVS 775 (824)
Q Consensus 722 l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~----~~~~~-----------~~~~~~~~~~ 775 (824)
|++|+.||......+ ..........+... ....+.... ..... ....+.....
T Consensus 252 ll~g~~pf~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (360)
T 3llt_A 252 LYTGSLLFRTHEHME-HLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHE 330 (360)
T ss_dssp HHHSSCSCCCSSHHH-HHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCH
T ss_pred HHHCCCCCCCCcHHH-HHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHH
Confidence 999999997632211 11111111111000 000000000 00000 0000112236
Q ss_pred HHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 776 FVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 776 ~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.+.+++.+||+.||++|||++|++++
T Consensus 331 ~l~~li~~~L~~dP~~Rpta~elL~h 356 (360)
T 3llt_A 331 LFCDFLYSILQIDPTLRPSPAELLKH 356 (360)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHHHhcCChhhCCCHHHHhcC
Confidence 78899999999999999999999864
No 178
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=343.92 Aligned_cols=269 Identities=25% Similarity=0.325 Sum_probs=202.9
Q ss_pred hhccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeecccc-----chhhhHHHHHHHHhcCC---CCcceeEEeeeecC
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCG-----RAFKSFDVECAMMKSIR---HRNLVKVISSCSNE 595 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 595 (824)
..++|++.+.||+|+||+||+|+. .+++.||||++..... .....+.+|+++++.++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 357899999999999999999986 4589999999875431 22346677888877775 99999999999765
Q ss_pred C-----eeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 040845 596 E-----FKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLS 669 (824)
Q Consensus 596 ~-----~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~ 669 (824)
. ..++||||++ ++|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEe
Confidence 4 5789999996 59999998765 34899999999999999999999 9999999999999999999999999
Q ss_pred ecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCC
Q 040845 670 DFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPI 749 (824)
Q Consensus 670 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 749 (824)
|||++....... ......||+.|+|||.+.+..++.++||||+||++|||++|+.||......+ ............
T Consensus 163 Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~ 238 (308)
T 3g33_A 163 DFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QLGKIFDLIGLP 238 (308)
T ss_dssp SCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HHHHHHHHHCCC
T ss_pred eCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCC
Confidence 999998654222 2344568999999999988899999999999999999999999997633221 112221111100
Q ss_pred cchhhc-----cccccCc--hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 750 STMEVV-----DANLLSQ--EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 750 ~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...... ....... ..........++..+.+++.+||+.||++|||+.|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 297 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQH 297 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcC
Confidence 000000 0000000 000011122456788999999999999999999999875
No 179
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6e-40 Score=342.67 Aligned_cols=247 Identities=23% Similarity=0.369 Sum_probs=182.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 368999999999999999999864 58999999986542 23356788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+ ++++.+++.... .+++.+++.++.|++.|++||| +.+|+||||||+||++++++.+||+|||++.......
T Consensus 92 ~e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 166 (275)
T 2eue_A 92 IEYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN 166 (275)
T ss_dssp EECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC-------
T ss_pred ehhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCcc
Confidence 9999 678888887654 6899999999999999999999 9999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
......||+.|+|||.+.+..+ +.++||||+|+++|||++|+.||....... ..........
T Consensus 167 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~------------- 229 (275)
T 2eue_A 167 ---FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV-LFKNISNGVY------------- 229 (275)
T ss_dssp -----------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC-------------
T ss_pred ---cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCC-------------
Confidence 1233458999999999887765 789999999999999999999997532111 0011000000
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|||++|++++
T Consensus 230 -------~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 263 (275)
T 2eue_A 230 -------TLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQD 263 (275)
T ss_dssp -------CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred -------CCCccCCHHHHHHHHHHhhcCHhHCCCHHHHhhC
Confidence 0112345678999999999999999999999875
No 180
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=2.3e-39 Score=360.02 Aligned_cols=201 Identities=24% Similarity=0.356 Sum_probs=168.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecC-----Ce
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE-----EF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 597 (824)
.++|++.+.||+|+||.||+|++. +++.||||++.... ....+.+.+|+++++.++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 578999999999999999999865 48899999986532 23456788999999999999999999998765 57
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
.|+||||++ ++|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+..
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 899999996 59999997654 6899999999999999999999 999999999999999999999999999999876
Q ss_pred CCCCCc--------------------cccccccccccccCccCc-CCCCCCccchHHHHHHHHHHHHhCCCCCcc
Q 040845 678 TGEDQS--------------------MTQTQTLATIGYMAPEYG-REGQVSTNGDVYSFGIMLMETFTRKKPTDE 731 (824)
Q Consensus 678 ~~~~~~--------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~el~tg~~p~~~ 731 (824)
...... ...+..+||++|+|||++ ....++.++||||+||++|||++|..||..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~ 254 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHIN 254 (432)
T ss_dssp -------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCS
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccccc
Confidence 433221 123556799999999985 566799999999999999999997666543
No 181
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=6.8e-40 Score=342.81 Aligned_cols=252 Identities=30% Similarity=0.443 Sum_probs=201.3
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecC-CeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNE-EFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 604 (824)
.++|++.+.||+|+||.||+|++. |+.||||+++.. ...+.+.+|+.++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 468999999999999999999886 899999998643 3457789999999999999999999997554 578999999
Q ss_pred cCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 605 MPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 605 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
+++++|.+++.... ..+++..++.++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeeccccccccccc--
Confidence 99999999997654 23788999999999999999999 9999999999999999999999999999987543221
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
....+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+....
T Consensus 172 ---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~--~~~~~~~~~--------------- 231 (278)
T 1byg_A 172 ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKGY--------------- 231 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG--HHHHHTTTC---------------
T ss_pred ---cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHhcCC---------------
Confidence 22347889999999988889999999999999999998 999987532211 111110000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||+.||++|||+.|+++.|++++..
T Consensus 232 ---~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 232 ---KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ---CCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 0011224567799999999999999999999999999998764
No 182
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.8e-39 Score=356.84 Aligned_cols=358 Identities=24% Similarity=0.291 Sum_probs=278.1
Q ss_pred CcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCC-------------ceeeccCC
Q 040845 13 TPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTL-------------KAFAVTNN 79 (824)
Q Consensus 13 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~L~~n 79 (824)
.|+.+ ..++|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|.+++++.+| ++|++++|
T Consensus 4 ~p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 4 NPRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 35555 468999999999999 5899999999999999999999999999999998875 99999999
Q ss_pred ccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcC
Q 040845 80 SLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTL 159 (824)
Q Consensus 80 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 159 (824)
.+++++.. .++|++|++++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|+++.++
T Consensus 82 ~l~~lp~~-----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~lp- 147 (454)
T 1jl5_A 82 GLSSLPEL-----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEKLP- 147 (454)
T ss_dssp CCSCCCSC-----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSSCC-
T ss_pred ccccCCCC-----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCCCc-
Confidence 99987762 4799999999999996 6654 48999999999999953 221 279999999999998754
Q ss_pred cccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccch
Q 040845 160 DLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPI 239 (824)
Q Consensus 160 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 239 (824)
.+.++++|++|++++|++.+++.. +.+|++|++++|++++ +| .++++++|+.|++++|.+++ +|.
T Consensus 148 ------~~~~l~~L~~L~l~~N~l~~lp~~------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~ 212 (454)
T 1jl5_A 148 ------ELQNSSFLKIIDVDNNSLKKLPDL------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD 212 (454)
T ss_dssp ------CCTTCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC
T ss_pred ------ccCCCCCCCEEECCCCcCcccCCC------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC
Confidence 388999999999999999975432 3589999999999997 55 69999999999999999986 443
Q ss_pred hhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccc
Q 040845 240 TLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDIL 319 (824)
Q Consensus 240 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~ 319 (824)
. .++|++|++++|+++ .+|. +..+++|+.|++++|++++ +|.. +++|+.|++++|+++.+|.. +++|+
T Consensus 213 ~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~ 280 (454)
T 1jl5_A 213 L---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLT 280 (454)
T ss_dssp C---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred C---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCC
Confidence 2 269999999999999 5664 8999999999999999996 3432 47899999999999999864 38899
Q ss_pred ccccccccccCcCCccccccccchhhhcccccccccCCCccCCC-CCCCeEEccCccccccCCccccccccccEEEccCc
Q 040845 320 DLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSL-KNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYN 398 (824)
Q Consensus 320 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 398 (824)
.|++++|++++. |.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|+.|++++|
T Consensus 281 ~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N 347 (454)
T 1jl5_A 281 FLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFN 347 (454)
T ss_dssp EEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred EEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCC
Confidence 999999999863 221 26899999999999863 2 23 589999999999996 6654 589999999999
Q ss_pred ccCCCCcccccCCcccceeeccCCcccC--CCCC
Q 040845 399 NLSGTIPVSLEKLSYLKDLNLSFNKLKG--EIPR 430 (824)
Q Consensus 399 ~l~~~~p~~~~~l~~L~~L~l~~N~l~~--~~p~ 430 (824)
+++ .+|. .+++|+.|++++|++++ .+|.
T Consensus 348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence 999 6776 47899999999999999 5564
No 183
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.4e-40 Score=377.32 Aligned_cols=262 Identities=27% Similarity=0.425 Sum_probs=213.5
Q ss_pred hhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
..++|++.+.||+|+||.||+|+++++..||||+++... ...+.+.+|+++|++++|+||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 356788999999999999999999888899999997543 345779999999999999999999999876 678999999
Q ss_pred cCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 605 MPHGSLEKYLHSS-NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 605 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
+++|+|.+++... ...+++.+++.++.||++||+||| +++|+||||||+|||++.++.+||+|||+++...... .
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 418 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 418 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-H
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-e
Confidence 9999999999753 246899999999999999999999 9999999999999999999999999999998654211 1
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
.......++..|+|||.+..+.++.++|||||||++|||++ |+.||......+ ....+...
T Consensus 419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~--~~~~i~~~---------------- 480 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE--VLDQVERG---------------- 480 (535)
T ss_dssp HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHH--HHHHHHTT----------------
T ss_pred ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC----------------
Confidence 12223456789999999988899999999999999999999 899987532211 11111100
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhccc
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLRN 812 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~~ 812 (824)
.+...+..++..+.++|.+||+.||++|||+.++++.|+++..+...+
T Consensus 481 --~~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~~ 528 (535)
T 2h8h_A 481 --YRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQ 528 (535)
T ss_dssp --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSCS
T ss_pred --CCCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCcc
Confidence 011122356778999999999999999999999999998876544433
No 184
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=355.04 Aligned_cols=266 Identities=18% Similarity=0.211 Sum_probs=203.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC----CCcEEEEEEeeccccc-----------hhhhHHHHHHHHhcCCCCcceeEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR----DGMEVAVKVFNLQCGR-----------AFKSFDVECAMMKSIRHRNLVKVIS 590 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~l~~ 590 (824)
.++|++.+.||+|+||.||+|.+. ++..||||+....... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 367999999999999999999875 5788999998754321 1234667889999999999999999
Q ss_pred eeec----CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC--
Q 040845 591 SCSN----EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM-- 664 (824)
Q Consensus 591 ~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-- 664 (824)
++.. ....++||||+ +++|.+++...+ .+++.+++.++.|++.||+||| +.+|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCC
Confidence 9877 77899999999 999999998766 7899999999999999999999 89999999999999998877
Q ss_pred cEEEeecccccccCCCCCc-----cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchh
Q 040845 665 VAHLSDFGIAKLLTGEDQS-----MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTL 739 (824)
Q Consensus 665 ~~kl~Dfg~a~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~ 739 (824)
.+||+|||+|+.+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..........
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~ 270 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAV 270 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHH
Confidence 9999999999876432211 11234569999999999998889999999999999999999999996533322222
Q ss_pred hhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHH
Q 040845 740 KHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIR 806 (824)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~ 806 (824)
........+. . ............++..+.+++.+||..||++|||++++++.|+++.
T Consensus 271 ~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~ 327 (345)
T 2v62_A 271 QTAKTNLLDE-L---------PQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHG 327 (345)
T ss_dssp HHHHHHHHHT-T---------THHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTC
T ss_pred HHHHHhhccc-c---------cHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccC
Confidence 2111110000 0 0000000001145678999999999999999999999999998753
No 185
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=5.2e-40 Score=356.27 Aligned_cols=249 Identities=27% Similarity=0.307 Sum_probs=195.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc---chhhhHHHHHHH-HhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG---RAFKSFDVECAM-MKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|+.+ +++.||||+++.... .....+..|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 467999999999999999999876 488999999976532 233455667666 577899999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+||+++.+|.+||+|||+++.....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 999999999999998755 6889999999999999999999 999999999999999999999999999999864322
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
. .......||+.|+|||++.+..++.++||||+||++|||++|+.||......+ ....+... ..
T Consensus 193 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~-~~~~i~~~------------~~- 256 (373)
T 2r5t_A 193 N--STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE-MYDNILNK------------PL- 256 (373)
T ss_dssp C--CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHH-HHHHHHHS------------CC-
T ss_pred C--CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHhc------------cc-
Confidence 2 12334569999999999999999999999999999999999999997532111 11111110 00
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++||++.+.++.
T Consensus 257 -------~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ 290 (373)
T 2r5t_A 257 -------QLKPNITNSARHLLEGLLQKDRTKRLGAKDDFME 290 (373)
T ss_dssp -------CCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHH
T ss_pred -------CCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHH
Confidence 0012345678999999999999999998644333
No 186
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=6.8e-40 Score=353.13 Aligned_cols=247 Identities=28% Similarity=0.400 Sum_probs=202.1
Q ss_pred ccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeecccc---chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCG---RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
+.|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|++++++++||||+++++++.+++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588899999999999999986 4689999999875432 23467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||++ |++.+++......+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence 9996 6888888766668999999999999999999999 899999999999999999999999999999865321
Q ss_pred ccccccccccccccCccCcC---CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 683 SMTQTQTLATIGYMAPEYGR---EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
....||+.|+|||++. .+.++.++|||||||++|||++|+.||....... ..........+ ..
T Consensus 208 ----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~-~~~~~~~~~~~---------~~ 273 (348)
T 1u5q_A 208 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS-ALYHIAQNESP---------AL 273 (348)
T ss_dssp ----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCC---------CC
T ss_pred ----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHhcCCC---------CC
Confidence 2346899999999873 5678999999999999999999999986532111 11111111000 00
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
.+..++..+.+++.+||+.||++|||++|++++-
T Consensus 274 ---------~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~ 307 (348)
T 1u5q_A 274 ---------QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHR 307 (348)
T ss_dssp ---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCH
T ss_pred ---------CCCCCCHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence 0123456688999999999999999999998764
No 187
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=4.2e-39 Score=337.83 Aligned_cols=252 Identities=23% Similarity=0.335 Sum_probs=204.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc------chhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG------RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||.||+|+.. +++.||+|+++.... ...+.+.+|+.++++++||||+++++++.+....
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 357899999999999999999876 589999999875421 1356789999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC----cEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM----VAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~----~~kl~Dfg~a 674 (824)
++||||+++++|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||+++.++ .+||+|||.+
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~ 159 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccc
Confidence 99999999999999997654 6899999999999999999999 99999999999999998877 8999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
....... ......+++.|+|||.+.+..++.++||||+|+++|||++|+.||......+ ....+....
T Consensus 160 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~-------- 227 (283)
T 3bhy_A 160 HKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQE-TLTNISAVN-------- 227 (283)
T ss_dssp EECC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTTC--------
T ss_pred eeccCCC---cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHH-HHHHhHhcc--------
Confidence 8764322 2233468999999999998899999999999999999999999987632111 111111000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..........++..+.+++.+||..||++|||+.|++++
T Consensus 228 --------~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 266 (283)
T 3bhy_A 228 --------YDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEH 266 (283)
T ss_dssp --------CCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHC
T ss_pred --------cCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhC
Confidence 000111223456678999999999999999999999985
No 188
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.5e-39 Score=342.58 Aligned_cols=261 Identities=24% Similarity=0.371 Sum_probs=209.4
Q ss_pred hccCCCCc-eeeeccceEEEEEEEC---CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 526 TDKFSENN-LIGRGGFGSVYKARIR---DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 526 ~~~~~~~~-~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
..+|.+.+ .||+|+||.||+|.+. +++.||||+++... ....+.+.+|+.+++.++||||+++++++ +.+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 46788877 9999999999999642 36889999987543 22356788999999999999999999999 566788
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~ 679 (824)
+||||+++++|.+++.... .+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.....
T Consensus 94 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 9999999999999998765 6899999999999999999999 89999999999999999999999999999987654
Q ss_pred CCCcc-ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 680 EDQSM-TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 680 ~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
..... ......+++.|+|||.+.+..++.++||||||+++|||++ |+.||...... .....+.....
T Consensus 170 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~~~~~~~~--------- 238 (291)
T 1xbb_A 170 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTAMLEKGER--------- 238 (291)
T ss_dssp TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHHHHHTTCC---------
T ss_pred CCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHHHHHcCCC---------
Confidence 33221 2223446788999999988889999999999999999999 99998763221 11111111000
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
...+..++..+.+++.+||+.||++|||+.|+++.|+++..+...
T Consensus 239 ---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 283 (291)
T 1xbb_A 239 ---------MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVN 283 (291)
T ss_dssp ---------CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhh
Confidence 011224567799999999999999999999999999999876544
No 189
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=3.4e-39 Score=360.76 Aligned_cols=266 Identities=22% Similarity=0.254 Sum_probs=197.1
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc--ccchhhhHHHHHHHHhcCCCCcceeEEeeeecC------
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ--CGRAFKSFDVECAMMKSIRHRNLVKVISSCSNE------ 595 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------ 595 (824)
..++|++.+.||+|+||+||+|... +|+.||||++... .....+.+.+|+.+++.++||||+++++++...
T Consensus 60 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~ 139 (464)
T 3ttj_A 60 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEF 139 (464)
T ss_dssp EETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTC
T ss_pred ecCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccC
Confidence 3578999999999999999999865 5899999999754 223456788999999999999999999998654
Q ss_pred CeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
...|+||||+++ ++.+.+.. .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 140 ~~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~ 212 (464)
T 3ttj_A 140 QDVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLAR 212 (464)
T ss_dssp CEEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC-
T ss_pred CeEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeee
Confidence 457999999976 57666643 4889999999999999999999 8999999999999999999999999999998
Q ss_pred ccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--ch-
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TM- 752 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~- 752 (824)
..... .......||++|+|||++.+..++.++||||+||++|||++|+.||.+....+ .+...+....... ..
T Consensus 213 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~-~~~~i~~~lg~p~~~~~~ 288 (464)
T 3ttj_A 213 TAGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID-QWNKVIEQLGTPCPEFMK 288 (464)
T ss_dssp ----C---CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCSCCHHHHT
T ss_pred ecCCC---cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHH
Confidence 65432 22344679999999999999999999999999999999999999997632111 1111111100000 00
Q ss_pred -------hhcc----------ccccCch--hhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 753 -------EVVD----------ANLLSQE--DIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 753 -------~~~~----------~~~~~~~--~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+ +...... ..........+..+.+|+.+||+.||++|||++|+++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 289 KLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp TSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred HcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0000 0000000 00001122346779999999999999999999999986
No 190
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.4e-39 Score=348.94 Aligned_cols=259 Identities=28% Similarity=0.468 Sum_probs=207.2
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcE--EEEEEeeccc-cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGME--VAVKVFNLQC-GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 601 (824)
++|++.+.||+|+||.||+|+.. ++.. ||||.+.... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 67899999999999999999864 4664 4999886432 34456788999999999 899999999999999999999
Q ss_pred EeccCCCCHHHHhhhCC---------------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcE
Q 040845 602 LEYMPHGSLEKYLHSSN---------------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVA 666 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~ 666 (824)
|||+++|+|.+++.... ..+++.+++.++.|+++||+||| +.+|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence 99999999999997653 46899999999999999999999 9999999999999999999999
Q ss_pred EEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhh
Q 040845 667 HLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVND 745 (824)
Q Consensus 667 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~ 745 (824)
||+|||++..... ........+++.|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ....+..
T Consensus 182 kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~--~~~~~~~ 256 (327)
T 1fvr_A 182 KIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE--LYEKLPQ 256 (327)
T ss_dssp EECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHGGG
T ss_pred EEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH--HHHHhhc
Confidence 9999999974321 112233457889999999988889999999999999999998 999987632111 1111100
Q ss_pred hCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 746 CLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.. ....+..++..+.+++.+||..||++|||+.|++++|+++.+....
T Consensus 257 ~~------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 304 (327)
T 1fvr_A 257 GY------------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKT 304 (327)
T ss_dssp TC------------------CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSSC
T ss_pred CC------------------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhcC
Confidence 00 0011223566789999999999999999999999999999875443
No 191
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2.8e-39 Score=342.90 Aligned_cols=251 Identities=21% Similarity=0.305 Sum_probs=204.0
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|.+.+.||+|+||.||+|+.. +|+.||+|++........+.+.+|+.+++.++||||+++++++.+....++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 467999999999999999999875 6899999999765444556788999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
+++++|.+++...+ .+++.++..++.|++.|++||| +.+|+||||||+||++ +.++.+||+|||++......
T Consensus 88 ~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~- 162 (304)
T 2jam_A 88 VSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG- 162 (304)
T ss_dssp CCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-
T ss_pred CCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-
Confidence 99999999987655 6899999999999999999999 8999999999999999 78899999999998754321
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
......||+.|+|||.+.+..++.++||||+|+++|||++|+.||......+ ....+.......
T Consensus 163 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~------------ 226 (304)
T 2jam_A 163 ---IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESK-LFEKIKEGYYEF------------ 226 (304)
T ss_dssp ---TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHCCCCC------------
T ss_pred ---ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCCCC------------
Confidence 2233468999999999999999999999999999999999999987532111 111111110000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......++..+.+++.+||..||++|||+.|++++
T Consensus 227 ----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (304)
T 2jam_A 227 ----ESPFWDDISESAKDFICHLLEKDPNERYTCEKALSH 262 (304)
T ss_dssp ----CTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred ----CccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 001112346678999999999999999999999875
No 192
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=6.1e-40 Score=352.40 Aligned_cols=254 Identities=22% Similarity=0.290 Sum_probs=201.8
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||.||+|..+ +|+.||||++.... ....+|++++.++ +||||+++++++.+....++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 3578999999999999999999875 58999999997543 2345688888888 7999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC----CcEEEeecccccccC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN----MVAHLSDFGIAKLLT 678 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~----~~~kl~Dfg~a~~~~ 678 (824)
||+++|+|.+++...+ .+++.++..++.|++.|++||| +.+|+||||||+||++.++ +.+||+|||++....
T Consensus 96 E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~ 171 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171 (342)
T ss_dssp CCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred eCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence 9999999999997765 6899999999999999999999 9999999999999998533 359999999998764
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ....+.......
T Consensus 172 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~--~~~~~~~~i~~~--------- 238 (342)
T 2qr7_A 172 AENG--LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDD--TPEEILARIGSG--------- 238 (342)
T ss_dssp CTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTS--CHHHHHHHHHHC---------
T ss_pred CCCC--ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcC--CHHHHHHHHccC---------
Confidence 3322 223456899999999998878999999999999999999999999753211 111111110000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
.... ....+..++..+.+++.+||..||++|||+.|++++=
T Consensus 239 ~~~~---~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp 279 (342)
T 2qr7_A 239 KFSL---SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHP 279 (342)
T ss_dssp CCCC---CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSH
T ss_pred Cccc---CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCC
Confidence 0000 0001123566789999999999999999999998863
No 193
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=351.96 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=210.3
Q ss_pred ccCCCCceeeeccceEEEEEEECC---------CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCccee----------
Q 040845 527 DKFSENNLIGRGGFGSVYKARIRD---------GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVK---------- 587 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------- 587 (824)
++|++.+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 689999999999999999998763 789999998643 56889999999999999988
Q ss_pred -----EEeeeec-CCeeEEEEeccCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee
Q 040845 588 -----VISSCSN-EEFKALVLEYMPHGSLEKYLHSS-NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL 660 (824)
Q Consensus 588 -----l~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill 660 (824)
+++++.. +...++||||+ +++|.+++... ...+++.+++.++.|++.||+||| +.+|+||||||+||++
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~ 192 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFV 192 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEE
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEE
Confidence 5666655 77889999999 99999999875 247999999999999999999999 8999999999999999
Q ss_pred CCCC--cEEEeecccccccCCCCCc-----cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccc
Q 040845 661 DDNM--VAHLSDFGIAKLLTGEDQS-----MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELF 733 (824)
Q Consensus 661 ~~~~--~~kl~Dfg~a~~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~ 733 (824)
+.++ .+||+|||+++.+...... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||....
T Consensus 193 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~ 272 (352)
T 2jii_A 193 DPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCL 272 (352)
T ss_dssp ETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred cCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCC
Confidence 9998 9999999999876433221 11233479999999999999899999999999999999999999998754
Q ss_pred cCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 734 NGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
................ .....+. ......++..+.+++.+||..||++|||++|+++.|+++.+....
T Consensus 273 ~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 340 (352)
T 2jii_A 273 PNTEDIMKQKQKFVDK-PGPFVGP---------CGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRV 340 (352)
T ss_dssp TCHHHHHHHHHHHHHS-CCCEECT---------TSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHhccCC-hhhhhhh---------ccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCC
Confidence 3322222222111000 0000000 000112356789999999999999999999999999999876653
No 194
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-38 Score=354.90 Aligned_cols=343 Identities=26% Similarity=0.365 Sum_probs=273.4
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCcc
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSL 81 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (824)
|++.+|.++++ | .+..+++|++|+|++|.+++..+ ++++++|++|++++|.+++..+ +.++++|++|++++|++
T Consensus 51 L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 51 LQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCC
Confidence 56788888875 3 38999999999999999996544 9999999999999999995544 99999999999999999
Q ss_pred ccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcc
Q 040845 82 SGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDL 161 (824)
Q Consensus 82 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 161 (824)
++.+. ...+++|++|++++|.+++. + .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.++.++
T Consensus 125 ~~~~~---~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--- 193 (466)
T 1o6v_A 125 TDIDP---LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS--- 193 (466)
T ss_dssp CCCGG---GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCCG---
T ss_pred CCChH---HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCCh---
Confidence 98765 34699999999999999853 3 58999999999997 5565443 4999999999999999998763
Q ss_pred cccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhh
Q 040845 162 SFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITL 241 (824)
Q Consensus 162 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 241 (824)
.+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+++. ..+
T Consensus 194 ----~l~~l~~L~~L~l~~n~l~~~~~----------------------------~~~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 194 ----VLAKLTNLESLIATNNQISDITP----------------------------LGILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp ----GGGGCTTCSEEECCSSCCCCCGG----------------------------GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ----hhccCCCCCEEEecCCccccccc----------------------------ccccCCCCEEECCCCCcccc--hhh
Confidence 37889999999999999876543 23356666667776666643 346
Q ss_pred cCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccccc
Q 040845 242 GKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDL 321 (824)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L 321 (824)
..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|+++.++. +..+++|+.|
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 314 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYL 314 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEE
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEE
Confidence 667777777777777764433 6667777777777777775443 6777778888888888777765 6677888888
Q ss_pred ccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccC
Q 040845 322 NLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 322 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 888888876554 67888899999999998865 468889999999999999987666 888999999999999998
Q ss_pred CCCccc
Q 040845 402 GTIPVS 407 (824)
Q Consensus 402 ~~~p~~ 407 (824)
+ .|..
T Consensus 389 ~-~p~~ 393 (466)
T 1o6v_A 389 N-APVN 393 (466)
T ss_dssp C-CCBC
T ss_pred C-Cchh
Confidence 4 4544
No 195
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=1.9e-39 Score=366.05 Aligned_cols=251 Identities=23% Similarity=0.362 Sum_probs=207.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||||++.... ......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999875 69999999997542 23446678899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 602 LEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
|||+++|+|.+++...+ ..+++..++.++.||+.||+||| +.+|+||||||+||+++.+|.+||+|||+|......
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 99999999999997654 35899999999999999999999 899999999999999999999999999999876433
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcc--hhhhhhhhhCCCcchhhcccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM--TLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 758 (824)
. ......||+.|+|||++.+..++.++||||+||++|||++|+.||........ .+...+... +.
T Consensus 340 ~---~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~-~~--------- 406 (576)
T 2acx_A 340 Q---TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-PE--------- 406 (576)
T ss_dssp C---CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHC-CC---------
T ss_pred c---cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcc-cc---------
Confidence 2 22335799999999999998999999999999999999999999976432111 111111100 00
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRI-----NAKEIVAK 801 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|| +++|+++|
T Consensus 407 ---------~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~H 445 (576)
T 2acx_A 407 ---------EYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEH 445 (576)
T ss_dssp ---------CCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTS
T ss_pred ---------cCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhC
Confidence 00123456789999999999999999 78998876
No 196
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=7e-40 Score=351.26 Aligned_cols=259 Identities=25% Similarity=0.417 Sum_probs=206.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC------CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR------DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||.||+|++. +++.||||++.... ......+.+|+.++++++||||+++++++.+....
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 478999999999999999999842 47789999986442 23456788999999999999999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCC------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEe
Q 040845 599 ALVLEYMPHGSLEKYLHSSN------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLS 669 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~ 669 (824)
++||||+++++|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999998654 35889999999999999999999 999999999999999984 4569999
Q ss_pred ecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCC
Q 040845 670 DFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLP 748 (824)
Q Consensus 670 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~ 748 (824)
|||++................+|+.|+|||.+.+..++.++||||||+++|||+| |..||...... .....+.....
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~~~~~~~ 263 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ--EVLEFVTSGGR 263 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH--HHHHHHHTTCC
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH--HHHHHHhcCCC
Confidence 9999986644333333344567899999999988899999999999999999998 88898653211 11111111000
Q ss_pred CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 749 ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
...+..++..+.+++.+||+.||++|||+.|++++|+.+.+
T Consensus 264 ------------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 264 ------------------MDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp ------------------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ------------------CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhc
Confidence 00112356678999999999999999999999999999875
No 197
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=2.3e-39 Score=347.23 Aligned_cols=271 Identities=22% Similarity=0.294 Sum_probs=198.4
Q ss_pred HHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
....++|++.+.||+|+||+||+|+.. +++.||||+++.... ...+.+.+|+.++++++||||+++++++.+++..+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 344678999999999999999999865 689999999865432 23456778999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee-----CCCCcEEEeecccc
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL-----DDNMVAHLSDFGIA 674 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill-----~~~~~~kl~Dfg~a 674 (824)
+||||++ |+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||++
T Consensus 110 lv~e~~~-~~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a 184 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184 (329)
T ss_dssp EEEECCS-EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred EEEecCC-CCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence 9999997 59999998765 6899999999999999999999 8999999999999999 45556999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC-CCc-c
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL-PIS-T 751 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~~~-~ 751 (824)
....... .......+|+.|+|||++.+. .++.++||||+||++|||++|+.||......+ .......... +.. .
T Consensus 185 ~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~ 261 (329)
T 3gbz_A 185 RAFGIPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID-QLFKIFEVLGLPDDTT 261 (329)
T ss_dssp HHHC-------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTT
T ss_pred cccCCcc--cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-HHHHHHHHhCCCchhh
Confidence 8764222 223345689999999998775 48999999999999999999999997632211 1111111110 000 0
Q ss_pred h-hhc-----cc--cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 752 M-EVV-----DA--NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 752 ~-~~~-----~~--~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ... .. ............+..++..+.+++.+||+.||++|||++|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 319 (329)
T 3gbz_A 262 WPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEH 319 (329)
T ss_dssp STTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred hhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCC
Confidence 0 000 00 00011111222233456789999999999999999999999874
No 198
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=3.5e-39 Score=356.86 Aligned_cols=254 Identities=22% Similarity=0.287 Sum_probs=195.6
Q ss_pred HhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--------cchhhhHHHHHHHHhcCCCCcceeEEeeeec
Q 040845 524 QATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--------GRAFKSFDVECAMMKSIRHRNLVKVISSCSN 594 (824)
Q Consensus 524 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 594 (824)
...++|.+.+.||+|+||.||+|... +++.||||++.... ......+.+|+.++++++||||+++++++..
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~ 211 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA 211 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence 34678999999999999999999865 58999999987542 1223457899999999999999999999864
Q ss_pred CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC---CcEEEeec
Q 040845 595 EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN---MVAHLSDF 671 (824)
Q Consensus 595 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~Df 671 (824)
+..++||||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.+ +.+||+||
T Consensus 212 -~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DF 286 (419)
T 3i6u_A 212 -EDYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDF 286 (419)
T ss_dssp -SEEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCS
T ss_pred -CceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeec
Confidence 45789999999999999987655 7899999999999999999999 8999999999999999754 45999999
Q ss_pred ccccccCCCCCccccccccccccccCccCcCC---CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCC
Q 040845 672 GIAKLLTGEDQSMTQTQTLATIGYMAPEYGRE---GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLP 748 (824)
Q Consensus 672 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~ 748 (824)
|+|+...... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||............+......
T Consensus 287 G~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~ 363 (419)
T 3i6u_A 287 GHSKILGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYN 363 (419)
T ss_dssp STTTSCC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCC
T ss_pred ccceecCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCC
Confidence 9998754221 2234568999999999853 567889999999999999999999997633222111111111000
Q ss_pred CcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 749 ISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||+.||++|||++|++++
T Consensus 364 ----------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 400 (419)
T 3i6u_A 364 ----------------FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 400 (419)
T ss_dssp ----------------CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred ----------------CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence 0011122456779999999999999999999999875
No 199
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=3e-39 Score=362.82 Aligned_cols=195 Identities=25% Similarity=0.371 Sum_probs=155.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeec-----CCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSN-----EEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-----~~~ 597 (824)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++.. ...
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 478999999999999999999865 58999999986532 2345678899999999999999999999843 357
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
.|+||||+ +++|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 89999998 569999997654 7899999999999999999999 999999999999999999999999999999876
Q ss_pred CCCCCc-------------------------cccccccccccccCccCc-CCCCCCccchHHHHHHHHHHHHhC
Q 040845 678 TGEDQS-------------------------MTQTQTLATIGYMAPEYG-REGQVSTNGDVYSFGIMLMETFTR 725 (824)
Q Consensus 678 ~~~~~~-------------------------~~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~el~tg 725 (824)
...... ...+..+||++|+|||++ ....++.++||||+||++|||++|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 432211 123445789999999975 566799999999999999999994
No 200
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-39 Score=349.99 Aligned_cols=272 Identities=23% Similarity=0.295 Sum_probs=201.7
Q ss_pred HHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-----chhhhHHHHHHHHhcCCCCcceeEEeeeecCC
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-----RAFKSFDVECAMMKSIRHRNLVKVISSCSNEE 596 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 596 (824)
....++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+++++.++||||+++++++.+..
T Consensus 6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 85 (346)
T 1ua2_A 6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS 85 (346)
T ss_dssp -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCC
Confidence 345678999999999999999999875 589999999865321 12356789999999999999999999999999
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
..++||||+++ +|.+++......+++.++..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 86 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 86 NISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKS 161 (346)
T ss_dssp CCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGST
T ss_pred ceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEeccccee
Confidence 99999999975 899999877667889999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc---h
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST---M 752 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~---~ 752 (824)
+.... .......+|+.|+|||.+.+. .++.++||||+||++|||++|.+||......+ .+............ .
T Consensus 162 ~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~ 238 (346)
T 1ua2_A 162 FGSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLD-QLTRIFETLGTPTEEQWP 238 (346)
T ss_dssp TTSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCTTTSS
T ss_pred ccCCc--ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH-HHHHHHHHcCCCChhhhh
Confidence 64322 223345689999999988654 58999999999999999999999987632211 11222211111000 0
Q ss_pred hh---ccccccCc-hh-hhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 753 EV---VDANLLSQ-ED-IHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 753 ~~---~~~~~~~~-~~-~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
+. .+...... +. ........++..+.+++.+||+.||++|||+.|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 239 DMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp STTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred hhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 00 00000000 00 0001113456789999999999999999999999886
No 201
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2e-39 Score=342.27 Aligned_cols=250 Identities=20% Similarity=0.295 Sum_probs=207.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|.+.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467999999999999999999876 48899999987542 23456788899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++.... .+++.++..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||.+.......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 99999999999987654 6899999999999999999999 8999999999999999999999999999998764322
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
. ......+|+.|+|||.+.+..++.++||||+|+++|||++|+.||......+. ...+....
T Consensus 170 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~--------------- 231 (294)
T 2rku_A 170 E--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-YLRIKKNE--------------- 231 (294)
T ss_dssp C--CBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHTTC---------------
T ss_pred c--ccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHHhhcc---------------
Confidence 2 22345689999999999988899999999999999999999999976322111 11110000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
...+..++..+.+++.+||+.||++|||++|++++-
T Consensus 232 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~ 267 (294)
T 2rku_A 232 -----YSIPKHINPVAASLIQKMLQTDPTARPTINELLNDE 267 (294)
T ss_dssp -----CCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSH
T ss_pred -----CCCccccCHHHHHHHHHHcccChhhCcCHHHHhhCh
Confidence 001123455688999999999999999999999863
No 202
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=6.3e-39 Score=348.42 Aligned_cols=258 Identities=25% Similarity=0.378 Sum_probs=208.3
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--------chhhhHHHHHHHHhcC-CCCcceeEE
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--------RAFKSFDVECAMMKSI-RHRNLVKVI 589 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~l~ 589 (824)
.......++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.+++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 344555678999999999999999999875 699999999875432 1245678899999999 799999999
Q ss_pred eeeecCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEe
Q 040845 590 SSCSNEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLS 669 (824)
Q Consensus 590 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~ 669 (824)
+++......++||||+++++|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++.+||+
T Consensus 167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~ 242 (365)
T 2y7j_A 167 DSYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLS 242 (365)
T ss_dssp EEEEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEEC
T ss_pred EEEeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEE
Confidence 99999999999999999999999997654 6899999999999999999999 8999999999999999999999999
Q ss_pred ecccccccCCCCCccccccccccccccCccCcCC------CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhh
Q 040845 670 DFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGRE------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWV 743 (824)
Q Consensus 670 Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~ 743 (824)
|||++..+..... .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||..... ......+
T Consensus 243 DfG~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~--~~~~~~i 317 (365)
T 2y7j_A 243 DFGFSCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ--ILMLRMI 317 (365)
T ss_dssp CCTTCEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHH
T ss_pred ecCcccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH--HHHHHHH
Confidence 9999987653322 234568999999998753 3588999999999999999999999975321 1111111
Q ss_pred hhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 744 NDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.... .. ........++..+.+++.+||..||++|||+.|++++
T Consensus 318 ~~~~------------~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 360 (365)
T 2y7j_A 318 MEGQ------------YQ---FSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQH 360 (365)
T ss_dssp HHTC------------CC---CCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HhCC------------CC---CCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 1000 00 0011122446678999999999999999999999874
No 203
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=2.5e-39 Score=339.60 Aligned_cols=251 Identities=25% Similarity=0.359 Sum_probs=198.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|.+.+.||+|+||.||+|+.. ++..||+|++.... ....+.+.+|++++++++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 367899999999999999999865 58999999987654 2345778999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeeccccccc
Q 040845 604 YMPHGSLEKYLHSS---NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 604 ~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~ 677 (824)
|+++|+|.+++... ...+++..++.++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||++...
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 99999999998643 357899999999999999999999 9999999999999999 45688999999999865
Q ss_pred CCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 678 TGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 678 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
.... ......+|+.|+|||.+. +.++.++||||+|+++|||++|+.||......+ .........+.
T Consensus 178 ~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~--~~~~~~~~~~~-------- 243 (285)
T 3is5_A 178 KSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEE--VQQKATYKEPN-------- 243 (285)
T ss_dssp ------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH--HHHHHHHCCCC--------
T ss_pred CCcc---cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHH--HHhhhccCCcc--------
Confidence 4322 223456899999999875 568999999999999999999999997632211 11111100000
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
... ....+++.+.+++.+||+.||++|||+.|++++
T Consensus 244 --~~~------~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~h 279 (285)
T 3is5_A 244 --YAV------ECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHH 279 (285)
T ss_dssp --CCC--------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTS
T ss_pred --ccc------ccCcCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 000 001134568899999999999999999999864
No 204
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=5.2e-39 Score=363.34 Aligned_cols=251 Identities=23% Similarity=0.330 Sum_probs=205.0
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||+||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++.+....++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 468999999999999999999875 68999999986542 334567889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC---CCCcEEEeecccccccCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD---DNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~---~~~~~kl~Dfg~a~~~~~ 679 (824)
||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++ .++.+||+|||++..+..
T Consensus 101 e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~ 176 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176 (486)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCC
T ss_pred EcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCC
Confidence 9999999999987655 6899999999999999999999 99999999999999995 566899999999986643
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||......+ ....+......
T Consensus 177 ~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~----------- 240 (486)
T 3mwu_A 177 NT---KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYA----------- 240 (486)
T ss_dssp C-------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCC-----------
T ss_pred CC---ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCC-----------
Confidence 22 2234569999999999875 58999999999999999999999997632211 11111111100
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||+.||++|||+.|++++
T Consensus 241 -----~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 241 -----FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp -----SCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred -----CCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 0111223456778999999999999999999999986
No 205
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3.2e-39 Score=338.81 Aligned_cols=247 Identities=25% Similarity=0.349 Sum_probs=205.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 367999999999999999999876 57899999986542 22346788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++...+ .+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~- 167 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL- 167 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS-
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCccc-
Confidence 99999999999998765 6899999999999999999999 999999999999999999999999999998765322
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
......|++.|+|||.+.+..++.++||||+|+++|||++|+.||......+ ........ +
T Consensus 168 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~----------~----- 228 (284)
T 2vgo_A 168 ---RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTE-THRRIVNV----------D----- 228 (284)
T ss_dssp ---CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH-HHHHHHTT----------C-----
T ss_pred ---ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhH-HHHHHhcc----------c-----
Confidence 1233568999999999999899999999999999999999999997532111 01111100 0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+..++..+.+++.+||..||++|||+.|++++
T Consensus 229 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h 263 (284)
T 2vgo_A 229 -----LKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEH 263 (284)
T ss_dssp -----CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTC
T ss_pred -----cCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhC
Confidence 00112345678899999999999999999999986
No 206
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=6e-39 Score=349.31 Aligned_cols=278 Identities=21% Similarity=0.248 Sum_probs=206.1
Q ss_pred cccHHHHHHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccc-----------hhhhHHHHHHHHhcCCCCc
Q 040845 516 RFSYLELFQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGR-----------AFKSFDVECAMMKSIRHRN 584 (824)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~n 584 (824)
+....++....++|++.+.||+|+||.||+|...+|+.||||++...... ..+.+.+|++++++++|||
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ 90 (362)
T 3pg1_A 11 RDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPN 90 (362)
T ss_dssp HHHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcC
Confidence 34466788889999999999999999999999888999999998644221 1367889999999999999
Q ss_pred ceeEEeeeec-----CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCee
Q 040845 585 LVKVISSCSN-----EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVL 659 (824)
Q Consensus 585 iv~l~~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nil 659 (824)
|+++++++.. ....++||||++ |+|.+++......+++..+..++.|++.||+||| +.+|+||||||+||+
T Consensus 91 iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl 166 (362)
T 3pg1_A 91 ILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNIL 166 (362)
T ss_dssp BCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEE
T ss_pred ccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEE
Confidence 9999999843 346899999997 6899998877668999999999999999999999 899999999999999
Q ss_pred eCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcch
Q 040845 660 LDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT 738 (824)
Q Consensus 660 l~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~ 738 (824)
++.++.+||+|||++....... ......+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+ .
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~ 242 (362)
T 3pg1_A 167 LADNNDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYN-Q 242 (362)
T ss_dssp ECTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-H
T ss_pred EcCCCCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHH-H
Confidence 9999999999999997543222 2334568999999998876 678999999999999999999999997632211 1
Q ss_pred hhhhhhhhCCCcch-----------hhccccccCc-hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 739 LKHWVNDCLPISTM-----------EVVDANLLSQ-EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 739 ~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.............. +......... ..........++..+.+++.+||+.||++|||+.|++++
T Consensus 243 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 317 (362)
T 3pg1_A 243 LNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRH 317 (362)
T ss_dssp HHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcC
Confidence 11111111110000 0000000000 000111223456779999999999999999999999875
No 207
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.1e-38 Score=335.79 Aligned_cols=248 Identities=25% Similarity=0.371 Sum_probs=199.0
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeec----CCeeE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSN----EEFKA 599 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 599 (824)
..|.+.+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.+++.++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 34777889999999999999865 58899999987543 3345678899999999999999999998864 45689
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeC-CCCcEEEeecccccc
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAP--VIHCDLKPSNVLLD-DNMVAHLSDFGIAKL 676 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~-~~~~~kl~Dfg~a~~ 676 (824)
+||||+++++|.+++.... .+++..++.++.|++.|++||| +.+ |+||||||+||+++ .++.+||+|||++..
T Consensus 106 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 9999999999999998754 6899999999999999999999 888 99999999999998 889999999999975
Q ss_pred cCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
.... ......||+.|+|||.+. +.++.++||||+|+++|+|++|+.||..................+
T Consensus 182 ~~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-------- 248 (290)
T 1t4h_A 182 KRAS----FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKP-------- 248 (290)
T ss_dssp CCTT----SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCC--------
T ss_pred cccc----ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCc--------
Confidence 4322 223456899999999876 458999999999999999999999997532221111111110000
Q ss_pred ccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 757 ANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+..+++.+.+++.+||+.||++|||++|++++
T Consensus 249 ----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 283 (290)
T 1t4h_A 249 ----------ASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNH 283 (290)
T ss_dssp ----------GGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ----------cccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhC
Confidence 01112234568999999999999999999999875
No 208
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-39 Score=346.42 Aligned_cols=258 Identities=24% Similarity=0.308 Sum_probs=191.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeee--------cC
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCS--------NE 595 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~--------~~ 595 (824)
..+|++.+.||+|+||.||+|++. +++.||||++........+.+.+|+.+++++. ||||+++++++. ..
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 357999999999999999999875 58999999987665556678899999999996 999999999983 34
Q ss_pred CeeEEEEeccCCCCHHHHhhh--CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCC--eEecCCCCCCeeeCCCCcEEEeec
Q 040845 596 EFKALVLEYMPHGSLEKYLHS--SNYSLDIFQRLNIMIDVASALEYLHFGYSAP--VIHCDLKPSNVLLDDNMVAHLSDF 671 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlk~~Nill~~~~~~kl~Df 671 (824)
...++||||++ |+|.+++.. ....+++.+++.++.|++.||+||| +.+ |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecC
Confidence 56789999995 699998865 3346999999999999999999999 888 999999999999999999999999
Q ss_pred ccccccCCCCCcc----------ccccccccccccCccCc---CCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcch
Q 040845 672 GIAKLLTGEDQSM----------TQTQTLATIGYMAPEYG---REGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT 738 (824)
Q Consensus 672 g~a~~~~~~~~~~----------~~~~~~~~~~y~aPE~~---~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~ 738 (824)
|++.......... ......+|+.|+|||.+ .+..++.++|||||||++|||++|+.||.......
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~-- 260 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR-- 260 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH--
Confidence 9998765432211 11134589999999988 56678999999999999999999999986532111
Q ss_pred hhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 739 LKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
........ ..+..++..+.+++.+||+.||++|||+.|++++|+.+.....
T Consensus 261 ---~~~~~~~~------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 261 ---IVNGKYSI------------------PPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp --------CCC------------------CTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred ---hhcCcccC------------------CcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 11100000 0011223347789999999999999999999999999976543
No 209
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=3.1e-39 Score=374.05 Aligned_cols=252 Identities=25% Similarity=0.386 Sum_probs=202.5
Q ss_pred ceeeeccceEEEEEEEC---CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEeccCC
Q 040845 533 NLIGRGGFGSVYKARIR---DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYMPH 607 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 607 (824)
+.||+|+||.||+|.+. .++.||||+++.... ...+.+.+|++++++++||||+++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999653 467899999976432 335789999999999999999999999965 457899999999
Q ss_pred CCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc-ccc
Q 040845 608 GSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS-MTQ 686 (824)
Q Consensus 608 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~-~~~ 686 (824)
|+|.+++.... .+++.+++.++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.+...... ...
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 99999997655 7899999999999999999999 999999999999999999999999999999876543322 223
Q ss_pred ccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhh
Q 040845 687 TQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDI 765 (824)
Q Consensus 687 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (824)
....+|+.|+|||++.+..++.++|||||||++|||++ |+.||......+ ....+....
T Consensus 530 ~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~--~~~~i~~~~------------------ 589 (635)
T 4fl3_A 530 THGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE--VTAMLEKGE------------------ 589 (635)
T ss_dssp -----CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH--HHHHHHTTC------------------
T ss_pred cCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcCC------------------
Confidence 34457889999999998899999999999999999998 999997632211 111111100
Q ss_pred hhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 766 HFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 766 ~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
....+..++.++.++|.+||+.||++|||+.++++.|+++..++
T Consensus 590 ~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l 633 (635)
T 4fl3_A 590 RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 633 (635)
T ss_dssp CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 11112346778999999999999999999999999999987654
No 210
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.3e-38 Score=349.80 Aligned_cols=251 Identities=21% Similarity=0.271 Sum_probs=193.5
Q ss_pred hccCCCC-ceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHh-cCCCCcceeEEeeeec----CCee
Q 040845 526 TDKFSEN-NLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMK-SIRHRNLVKVISSCSN----EEFK 598 (824)
Q Consensus 526 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~-~l~h~niv~l~~~~~~----~~~~ 598 (824)
.++|.+. +.||+|+||+||+|... +|+.||||++.. ...+.+|++++. ..+||||+++++++.. ....
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~ 134 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 134 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence 3567665 68999999999999875 589999999863 245677888874 4589999999999865 5678
Q ss_pred EEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg~a 674 (824)
++||||+++|+|.+++.... ..+++.++..++.||+.||+||| +.+|+||||||+||+++. ++.+||+|||++
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a 211 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEecccc
Confidence 99999999999999998654 46899999999999999999999 899999999999999997 789999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcch--hhhhhhhhCCCcch
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT--LKHWVNDCLPISTM 752 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~--~~~~~~~~~~~~~~ 752 (824)
+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||......... ....+....
T Consensus 212 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~----- 283 (400)
T 1nxk_A 212 KETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ----- 283 (400)
T ss_dssp EECC--------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTC-----
T ss_pred cccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCc-----
Confidence 8654222 223456899999999999999999999999999999999999999764322110 111110000
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
.... ......++.++.+++.+||+.||++|||+.|++++-
T Consensus 284 -------~~~~---~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp 323 (400)
T 1nxk_A 284 -------YEFP---NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP 323 (400)
T ss_dssp -------CCCC---TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSH
T ss_pred -------ccCC---CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence 0000 001123567789999999999999999999999864
No 211
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.3e-39 Score=348.22 Aligned_cols=249 Identities=20% Similarity=0.293 Sum_probs=206.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
..+|.+.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 468999999999999999999876 47899999987542 23456788899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++.... .+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 99999999999987654 7899999999999999999999 8999999999999999999999999999998764322
Q ss_pred CccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
. ......||..|+|||.+.+..++.++||||||+++|||++|+.||......+. ...+.....
T Consensus 196 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~-------------- 258 (335)
T 2owb_A 196 E--RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKET-YLRIKKNEY-------------- 258 (335)
T ss_dssp C--CBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH-HHHHHHTCC--------------
T ss_pred c--cccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHH-HHHHhcCCC--------------
Confidence 2 22345689999999999888899999999999999999999999975321110 111111000
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|||+.|++++
T Consensus 259 ------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 259 ------SIPKHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp ------CCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0112345568899999999999999999999986
No 212
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.2e-39 Score=340.24 Aligned_cols=252 Identities=26% Similarity=0.416 Sum_probs=206.0
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeec---------
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSN--------- 594 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------- 594 (824)
...+|++.+.||+|+||.||+|++. +++.||+|++.... +.+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 3467999999999999999999876 69999999987542 457789999999999999999998854
Q ss_pred -------CCeeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcE
Q 040845 595 -------EEFKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVA 666 (824)
Q Consensus 595 -------~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~ 666 (824)
....++||||+++++|.+++.... ..+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCE
Confidence 445789999999999999997543 57899999999999999999999 8999999999999999999999
Q ss_pred EEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhh
Q 040845 667 HLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDC 746 (824)
Q Consensus 667 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~ 746 (824)
||+|||++........ .....+++.|+|||.+.+..++.++||||||+++|||++|..|+.... .+....
T Consensus 162 kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~-------~~~~~~ 231 (284)
T 2a19_B 162 KIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS-------KFFTDL 231 (284)
T ss_dssp EECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH-------HHHHHH
T ss_pred EECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH-------HHHHHh
Confidence 9999999987653322 233468999999999988889999999999999999999998865311 111100
Q ss_pred CCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhcc
Q 040845 747 LPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLLR 811 (824)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~~ 811 (824)
.. . . .+..++..+.+++.+||..||++|||+.|++++|+.+.++...
T Consensus 232 ~~--------~-~---------~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~ 278 (284)
T 2a19_B 232 RD--------G-I---------ISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK 278 (284)
T ss_dssp HT--------T-C---------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred hc--------c-c---------ccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence 00 0 0 0112345688999999999999999999999999998765444
No 213
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=1.2e-39 Score=345.48 Aligned_cols=253 Identities=23% Similarity=0.346 Sum_probs=202.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
.++|++.+.||+|+||.||+|++. +++.||+|++........+.+.+|+.+++.++||||+++++++..++..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 467999999999999999999876 4899999998766566678889999999999999999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcc
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSM 684 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~ 684 (824)
+++++|.+++......+++.++..++.|++.|++||| +.+++||||||+||+++.++.+||+|||++...... ..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 172 (302)
T 2j7t_A 98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--LQ 172 (302)
T ss_dssp CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--HH
T ss_pred CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--cc
Confidence 9999999999876667999999999999999999999 899999999999999999999999999987643211 11
Q ss_pred ccccccccccccCccCc-----CCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 685 TQTQTLATIGYMAPEYG-----REGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 685 ~~~~~~~~~~y~aPE~~-----~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
......||+.|+|||.+ .+..++.++||||+|+++|||++|+.||....... ..........+
T Consensus 173 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~~~----------- 240 (302)
T 2j7t_A 173 KRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR-VLLKIAKSDPP----------- 240 (302)
T ss_dssp C-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHSCCC-----------
T ss_pred ccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHH-HHHHHhccCCc-----------
Confidence 12234689999999987 46678999999999999999999999987632211 11111111000
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+..++..+.+++.+||..||++|||+.|++++
T Consensus 241 ------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 276 (302)
T 2j7t_A 241 ------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276 (302)
T ss_dssp ------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTS
T ss_pred ------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 011123456678999999999999999999999874
No 214
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=4.2e-39 Score=364.33 Aligned_cols=252 Identities=23% Similarity=0.351 Sum_probs=207.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++.+....++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 467999999999999999999876 68999999986542 33467789999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~~ 678 (824)
|||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||++ +.++.+||+|||+|..+.
T Consensus 105 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 99999999999997655 6899999999999999999999 8999999999999999 567899999999998764
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||......+ ....+......
T Consensus 181 ~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~---------- 245 (484)
T 3nyv_A 181 ASK---KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYD-ILKKVEKGKYT---------- 245 (484)
T ss_dssp CCC---SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC----------
T ss_pred ccc---ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHH-HHHHHHcCCCC----------
Confidence 332 2334569999999998865 68999999999999999999999997632211 11111111000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
........++..+.+++.+||+.||++|||+.|+++|=
T Consensus 246 ------~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~ 283 (484)
T 3nyv_A 246 ------FELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHE 283 (484)
T ss_dssp ------CCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred ------CCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhCh
Confidence 01112234567789999999999999999999999863
No 215
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=9.4e-39 Score=343.15 Aligned_cols=263 Identities=20% Similarity=0.287 Sum_probs=202.6
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeeec--CCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCSN--EEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 601 (824)
.++|++.+.||+|+||+||+|+. .+++.||||+++. ...+.+.+|+.++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 36799999999999999999986 4689999999863 33567889999999997 9999999999987 6678999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC-cEEEeecccccccCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM-VAHLSDFGIAKLLTGE 680 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~-~~kl~Dfg~a~~~~~~ 680 (824)
|||+++++|.+++. .+++.++..++.|++.||+||| +.+|+||||||+||+++.++ .+||+|||+|......
T Consensus 112 ~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp EECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred EeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 99999999999985 3788999999999999999999 99999999999999999776 8999999999876433
Q ss_pred CCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcc---
Q 040845 681 DQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVD--- 756 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 756 (824)
.. .....++..|+|||.+.+ ..++.++||||+||++|||++|+.||.........+.............+..+
T Consensus 185 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 261 (330)
T 3nsz_A 185 QE---YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYN 261 (330)
T ss_dssp CC---CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred Cc---cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhc
Confidence 22 233468999999999876 66899999999999999999999999653322222211111111000000000
Q ss_pred ------------ccccC--chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 757 ------------ANLLS--QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 757 ------------~~~~~--~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..... ........+..++..+.+++.+||+.||++|||++|++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~h 320 (330)
T 3nsz_A 262 IELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEH 320 (330)
T ss_dssp CCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred cccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcC
Confidence 00000 0000011122357789999999999999999999999875
No 216
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=4.9e-39 Score=335.98 Aligned_cols=248 Identities=25% Similarity=0.372 Sum_probs=197.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|.+.+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 367999999999999999999876 68999999987542 23456788999999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++.... .+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 99999999999997765 6899999999999999999999 8999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccccc
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLL 760 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (824)
......+++.|+|||.+.+..+ +.++||||+|+++|||++|+.||...... .....+.... .
T Consensus 166 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~------------~ 228 (276)
T 2h6d_A 166 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP--TLFKKIRGGV------------F 228 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHCC------------C
T ss_pred ---ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--HHHHHhhcCc------------c
Confidence 1233468999999999987765 68999999999999999999998753211 1111111000 0
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 761 SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|||+.|++++
T Consensus 229 -------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 229 -------YIPEYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp -------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred -------cCchhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 0112345668899999999999999999999986
No 217
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.5e-39 Score=341.84 Aligned_cols=252 Identities=28% Similarity=0.375 Sum_probs=203.2
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
..++|++.+.||+|+||.||+|... +|+.||||++... ...+.+.+|+.+++.++||||+++++++......++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4577999999999999999999876 4899999998754 345678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++++|.+++......+++.++..++.|++.|++||| +.+++|+||||+||+++.++.+||+|||.+.......
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~-- 179 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM-- 179 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--
Confidence 99999999999865567999999999999999999999 9999999999999999999999999999998764322
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCch
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQE 763 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (824)
.......+++.|+|||.+.+..++.++||||+|+++|||++|+.||....... .........+
T Consensus 180 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~--~~~~~~~~~~--------------- 242 (314)
T 3com_A 180 AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMR--AIFMIPTNPP--------------- 242 (314)
T ss_dssp SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHH--HHHHHHHSCC---------------
T ss_pred cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHH--HHHHHhcCCC---------------
Confidence 12234568999999999999899999999999999999999999987532111 0000000000
Q ss_pred hhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 764 DIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 764 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.....+..++..+.+++.+||..||++|||+.|++++
T Consensus 243 -~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~ 279 (314)
T 3com_A 243 -PTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQH 279 (314)
T ss_dssp -CCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred -cccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 0001122346678999999999999999999999874
No 218
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=7.1e-39 Score=360.97 Aligned_cols=254 Identities=23% Similarity=0.330 Sum_probs=206.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|.+.+.||+|+||.||+|+.+ +|+.||||++.... ....+.+..|+.++++++||||+++++++.+....|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 367889999999999999999875 59999999997542 23346788899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 602 LEYMPHGSLEKYLHSSN---YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
|||+++|+|.+++.... ..+++..++.++.||+.||+||| +.+|+||||||+||+++.+|.+||+|||+++.+.
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999987643 46899999999999999999999 9999999999999999999999999999998764
Q ss_pred CCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcccc
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDAN 758 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (824)
.... ......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ....+..... ...
T Consensus 341 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~-~~~~~~~~i~--------~~~ 409 (543)
T 3c4z_A 341 AGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-ENKELKQRVL--------EQA 409 (543)
T ss_dssp TTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC-CHHHHHHHHH--------HCC
T ss_pred CCCc--ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch-hHHHHHHHHh--------hcc
Confidence 3322 2233579999999999999999999999999999999999999997642211 1111111100 000
Q ss_pred ccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCH-----HHHHHH
Q 040845 759 LLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINA-----KEIVAK 801 (824)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~-----~evl~~ 801 (824)
...+..++..+.+++.+||+.||++||++ +|+++|
T Consensus 410 --------~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~H 449 (543)
T 3c4z_A 410 --------VTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTH 449 (543)
T ss_dssp --------CCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTS
T ss_pred --------cCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcC
Confidence 00112346678999999999999999965 666653
No 219
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.2e-38 Score=345.19 Aligned_cols=271 Identities=23% Similarity=0.326 Sum_probs=204.5
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeec--------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSN-------- 594 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-------- 594 (824)
.++|++.+.||+|+||.||+|+. .+|+.||||++..... .....+.+|+.+++.++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46899999999999999999987 4689999999865432 234567889999999999999999999876
Q ss_pred CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccc
Q 040845 595 EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIA 674 (824)
Q Consensus 595 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a 674 (824)
.+..++||||+++ ++.+.+......+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+|
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 3468999999975 888888776667999999999999999999999 999999999999999999999999999999
Q ss_pred cccCCCCC--ccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC--CC
Q 040845 675 KLLTGEDQ--SMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL--PI 749 (824)
Q Consensus 675 ~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~ 749 (824)
..+..... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .......... +.
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~ 250 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALISQLCGSITP 250 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCT
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCCh
Confidence 87643222 222344568999999998876 457999999999999999999999997632211 1111111111 10
Q ss_pred cc-hhhccccc------cC---chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 750 ST-MEVVDANL------LS---QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 750 ~~-~~~~~~~~------~~---~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.. ........ .. ............++.+.+++.+||+.||++|||++|++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 251 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp TTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 00 00000000 00 0000111111235668999999999999999999999986
No 220
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=7.7e-39 Score=338.03 Aligned_cols=251 Identities=27% Similarity=0.397 Sum_probs=199.6
Q ss_pred cCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEeccC
Q 040845 528 KFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLEYMP 606 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 606 (824)
+|....+||+|+||.||+|.+. +++.||||.+........+.+.+|+.+++.++||||+++++++.+.+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 4555569999999999999864 588999999987655667789999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-CCcEEEeecccccccCCCCCc
Q 040845 607 HGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD-NMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 607 ~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
+++|.+++.... ...++..+..++.|++.|++||| +.+|+||||||+||+++. ++.+||+|||.+.......
T Consensus 103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~-- 177 (295)
T 2clq_A 103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN-- 177 (295)
T ss_dssp EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC----
T ss_pred CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC--
Confidence 999999998653 35678899999999999999999 899999999999999987 8999999999998764322
Q ss_pred cccccccccccccCccCcCCCC--CCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccC
Q 040845 684 MTQTQTLATIGYMAPEYGREGQ--VSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLS 761 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~--~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (824)
.......|++.|+|||.+.+.. ++.++||||||+++|||++|+.||............... .. .
T Consensus 178 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~--~~------~------ 243 (295)
T 2clq_A 178 PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGM--FK------V------ 243 (295)
T ss_dssp ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHH--HC------C------
T ss_pred CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcc--cc------c------
Confidence 1223446899999999987643 789999999999999999999999753221111110000 00 0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+..++..+.+++.+||+.||++|||+.|++++
T Consensus 244 ----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~ 279 (295)
T 2clq_A 244 ----HPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVD 279 (295)
T ss_dssp ----CCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTS
T ss_pred ----cccccccCCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 000112346678999999999999999999999764
No 221
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=3.4e-39 Score=346.47 Aligned_cols=269 Identities=25% Similarity=0.340 Sum_probs=203.2
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
..++|++.+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 3578999999999999999999876 489999999865432 2345677899999999999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.++..... .+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 103 ~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 178 (331)
T 4aaa_A 103 FEFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPG 178 (331)
T ss_dssp EECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred EecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCc
Confidence 99999988888866544 6899999999999999999999 9999999999999999999999999999998654322
Q ss_pred CccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc----------
Q 040845 682 QSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS---------- 750 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~---------- 750 (824)
. ......+|+.|+|||.+.+. .++.++||||+||++|||++|+.||......+ .............
T Consensus 179 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
T 4aaa_A 179 E--VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMCLGNLIPRHQELFNKN 255 (331)
T ss_dssp -------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCSCCHHHHHHHHHC
T ss_pred c--ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCCChhhhhHhhhc
Confidence 2 22345689999999998775 68999999999999999999999997633221 1111111100000
Q ss_pred --chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 751 --TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 751 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
......+.... ..........++..+.+++.+||+.||++|||++|++++
T Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 256 PVFAGVRLPEIKE-REPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp GGGTTCCCCCCSS-CCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred cccccccCccccc-cchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 00000000000 001111122467789999999999999999999999875
No 222
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.5e-38 Score=361.04 Aligned_cols=252 Identities=21% Similarity=0.332 Sum_probs=203.6
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-------------chhhhHHHHHHHHhcCCCCcceeEEe
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-------------RAFKSFDVECAMMKSIRHRNLVKVIS 590 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~ 590 (824)
..++|.+.+.||+|+||+||+|+.+ +++.||||++..... ...+.+.+|+.++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3578999999999999999999875 488999999865421 23467889999999999999999999
Q ss_pred eeecCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC---cEE
Q 040845 591 SCSNEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM---VAH 667 (824)
Q Consensus 591 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~---~~k 667 (824)
++.+....++||||+++|+|.+++.... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++ .+|
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEE
Confidence 9999999999999999999999987655 6899999999999999999999 99999999999999998776 699
Q ss_pred EeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC
Q 040845 668 LSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 668 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
|+|||+|..+.... ......||+.|+|||++. +.++.++||||+||++|+|++|..||......+ ..........
T Consensus 190 l~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~ 264 (504)
T 3q5i_A 190 IVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQD-IIKKVEKGKY 264 (504)
T ss_dssp ECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCC
T ss_pred EEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCC
Confidence 99999998764332 223456999999999886 468999999999999999999999997632211 1111111000
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.........++..+.+++.+||+.||++|||++|++++
T Consensus 265 ----------------~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 265 ----------------YFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp ----------------CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred ----------------CCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 01111223456779999999999999999999999876
No 223
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.2e-39 Score=343.63 Aligned_cols=259 Identities=26% Similarity=0.385 Sum_probs=200.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC--CCc--EEEEEEeeccc---cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR--DGM--EVAVKVFNLQC---GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~--~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 598 (824)
.++|++.+.||+|+||.||+|++. +++ .||||+++... ....+.+.+|++++++++||||+++++++.++. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 367999999999999999999863 233 68999886542 344577889999999999999999999998765 7
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||+++++|.+++......+++.++..++.|+++|++||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 8999999999999999876557899999999999999999999 8999999999999999999999999999998765
Q ss_pred CCCCcc-ccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 679 GEDQSM-TQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 679 ~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
...... ......+|..|+|||.+.+..++.++||||+|+++|||++ |+.||......+ ..........
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~-~~~~~~~~~~--------- 242 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQ-ILHKIDKEGE--------- 242 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH-HHHHHHTSCC---------
T ss_pred ccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHH-HHHHHHccCC---------
Confidence 433221 2233457888999999988889999999999999999999 999987632211 1111100000
Q ss_pred ccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHH
Q 040845 757 ANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRD 807 (824)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~ 807 (824)
....+..++..+.+++.+||..||++|||+.++++.|+++..
T Consensus 243 ---------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~ 284 (291)
T 1u46_A 243 ---------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP 284 (291)
T ss_dssp ---------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred ---------CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence 001112456779999999999999999999999999998764
No 224
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=9.7e-39 Score=361.69 Aligned_cols=251 Identities=22% Similarity=0.337 Sum_probs=200.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||+||+|+.+ ++..||||++.... ......+.+|+.+++.++||||+++++++.+....++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 457999999999999999999876 58999999987543 334567889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccccccCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg~a~~~~~ 679 (824)
||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+|..+..
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 9999999999887654 6899999999999999999999 999999999999999976 45599999999987643
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. ......||+.|+|||++. +.++.++||||+||++|+|++|+.||......+ ....+.......
T Consensus 192 ~~---~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~~~~~---------- 256 (494)
T 3lij_A 192 QK---KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQE-ILRKVEKGKYTF---------- 256 (494)
T ss_dssp TB---CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCCCC----------
T ss_pred Cc---cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCCCCC----------
Confidence 22 223456999999999886 468999999999999999999999997632211 111111111100
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......++..+.+++.+||+.||++|||+.|++++
T Consensus 257 ------~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 257 ------DSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp ------CSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred ------CchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 001112346678999999999999999999999976
No 225
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=1.3e-39 Score=356.10 Aligned_cols=246 Identities=16% Similarity=0.213 Sum_probs=191.4
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeecc---ccchhhhHHHHHH---HHhcCCCCcceeEE-------ee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQ---CGRAFKSFDVECA---MMKSIRHRNLVKVI-------SS 591 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~---~~~~~~~~~~E~~---~l~~l~h~niv~l~-------~~ 591 (824)
.++|++.+.||+|+||.||+|++ .+|+.||||++... .....+.+.+|+. ++++++||||++++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46788899999999999999986 46999999999743 2345577889994 55555799999998 55
Q ss_pred eecCC-----------------eeEEEEeccCCCCHHHHhhhCCC------CCCHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 040845 592 CSNEE-----------------FKALVLEYMPHGSLEKYLHSSNY------SLDIFQRLNIMIDVASALEYLHFGYSAPV 648 (824)
Q Consensus 592 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~LH~~~~~~i 648 (824)
+.+++ ..++||||+ +|+|.+++...+. .+++..++.++.|++.||+||| +.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 55443 378999999 6799999976431 2335888899999999999999 8999
Q ss_pred EecCCCCCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCC-----------CCCccchHHHHHH
Q 040845 649 IHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREG-----------QVSTNGDVYSFGI 717 (824)
Q Consensus 649 vH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----------~~~~~~DvwslG~ 717 (824)
+||||||+||+++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++|||||||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~ 301 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGL 301 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHH
Confidence 9999999999999999999999999985321 2233457 999999999877 8999999999999
Q ss_pred HHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHH
Q 040845 718 MLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKE 797 (824)
Q Consensus 718 ~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~e 797 (824)
++|||++|+.||........ ... ... ....++..+.+++.+||+.||++|||+.|
T Consensus 302 il~elltg~~Pf~~~~~~~~--~~~-----------~~~------------~~~~~~~~~~~li~~~L~~dp~~Rpt~~e 356 (377)
T 3byv_A 302 VIYWIWCADLPITKDAALGG--SEW-----------IFR------------SCKNIPQPVRALLEGFLRYPKEDRLLPLQ 356 (377)
T ss_dssp HHHHHHHSSCCC------CC--SGG-----------GGS------------SCCCCCHHHHHHHHHHTCSSGGGCCCHHH
T ss_pred HHHHHHHCCCCCcccccccc--hhh-----------hhh------------hccCCCHHHHHHHHHHcCCCchhCCCHHH
Confidence 99999999999865322110 000 000 00234567899999999999999999999
Q ss_pred HHHH--HHHHH
Q 040845 798 IVAK--LLKIR 806 (824)
Q Consensus 798 vl~~--L~~~~ 806 (824)
++++ ++.+.
T Consensus 357 ~l~hp~f~~~~ 367 (377)
T 3byv_A 357 AMETPEYEQLR 367 (377)
T ss_dssp HHTSHHHHHHH
T ss_pred HhhChHHHHHH
Confidence 9873 44443
No 226
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=5.9e-39 Score=349.02 Aligned_cols=265 Identities=21% Similarity=0.323 Sum_probs=206.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|++. +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 367999999999999999999876 58999999987653 2345678899999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
|+++++|.+++.... .+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||++......
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999998765 6899999999999999999999 75 8999999999999999999999999999755321
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC---------------
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL--------------- 747 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~--------------- 747 (824)
......||+.|+|||++.+..++.++||||+||++|||++|+.||......+.. .......
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELE--LMFGCQVEGDAAETPPRPRTPG 261 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHH--HHHC------------------
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHH--HHhcccccccCCCCCCCcccCC
Confidence 123346899999999999999999999999999999999999999763221110 0000000
Q ss_pred ------------CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 748 ------------PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 748 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
+....+..+...... ........++..+.+++.+||+.||++|||++|+++|=
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 326 (360)
T 3eqc_A 262 RPLNKFGMDSRPPMAIFELLDYIVNEP--PPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHA 326 (360)
T ss_dssp ------------CCCHHHHHHHHHHSC--CCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSH
T ss_pred CcccccccCCCCcccchhhhhHHhccC--CCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhCh
Confidence 000000000000000 00001123566799999999999999999999999863
No 227
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-38 Score=351.84 Aligned_cols=354 Identities=17% Similarity=0.137 Sum_probs=250.6
Q ss_pred ccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCc
Q 040845 8 FLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSS 87 (824)
Q Consensus 8 ~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 87 (824)
.+....+..++++++|++|+|++|.+++. | .|+.+++|++|+|++|++++. | +..+++|++|++++|++++++
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--
Confidence 44556666788899999999999999864 5 688899999999999999854 4 888899999999999988764
Q ss_pred cccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCc-CCCCcCccccccc
Q 040845 88 ITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNN-LTSSTLDLSFLSS 166 (824)
Q Consensus 88 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~ 166 (824)
...+++|++|+|++|++++. + +..+++|++|++++|++++. .++++++|++|++++|. +..+ .
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--------~ 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--------D 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--------C
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--------c
Confidence 34688999999999998863 3 78888999999999998864 37888899999999884 4333 2
Q ss_pred CCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCC
Q 040845 167 LSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQK 246 (824)
Q Consensus 167 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 246 (824)
+..+++|++|++++|++++++ + +. .++|+.|++++|++++. .+..+++|+.|++++|++++ +| +..+++
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~---l-~~-l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD---V-SQ-NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC---C-TT-CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred cccCCcCCEEECCCCccceec---c-cc-CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCC
Confidence 677888999999999888763 1 11 34677777777777754 36677777777777777775 34 667777
Q ss_pred CCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCC-CCCCccccccccccccccc
Q 040845 247 LQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELT-SIPLNFWSLKDILDLNLSS 325 (824)
Q Consensus 247 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~l~~ 325 (824)
|++|++++|++++..+ ..+++|+.|++++|+ |+.|++++|.+. .+| +..+++|+.|++++
T Consensus 235 L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDV---STLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH 295 (457)
T ss_dssp CSEEECCSSCCSCCCC---TTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred CCEEEeeCCcCCCcCH---HHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCC
Confidence 7777777777775433 334455555544442 233333444321 222 23445566666666
Q ss_pred ccccCcCCc--------cccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccC
Q 040845 326 NCFSGPLPL--------EIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSY 397 (824)
Q Consensus 326 N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 397 (824)
|...+.+|. .+.++++|+.|++++|++++. .++.+++|+.|++++|+|++ ++.|..|++++
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~ 364 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALN 364 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGG
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccC
Confidence 654433332 234446777888888888764 27778888888888888875 24566667788
Q ss_pred cccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 398 NNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 398 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
|.+.|. ..+..|..+++++|+++|.+|.
T Consensus 365 n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 365 NNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp TSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 887754 3456778889999999998886
No 228
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=3.4e-38 Score=352.40 Aligned_cols=265 Identities=18% Similarity=0.232 Sum_probs=212.2
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCC-CcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRH-RNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 603 (824)
.++|++.+.||+|+||.||+|++ .+++.||||++.... ....+..|+++++.++| +++..+..++.+.+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999986 468999999876543 34568899999999987 556666667778889999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee---CCCCcEEEeecccccccCCC
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---DDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---~~~~~~kl~Dfg~a~~~~~~ 680 (824)
|+ +++|.+++......+++.+++.++.||+.||+||| +.+|+||||||+|||+ +.++.+||+|||+++.+...
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 89999999876668999999999999999999999 9999999999999999 68899999999999877543
Q ss_pred CCc-----cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhc
Q 040845 681 DQS-----MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVV 755 (824)
Q Consensus 681 ~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (824)
... .......||+.|+|||.+.+..++.++|||||||++|||++|+.||......... ..+.. +.
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~-~~~~~---------i~ 229 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKK-QKYEK---------IS 229 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHH-HHHHH---------HH
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHH-HHHHH---------Hh
Confidence 322 1223567999999999999999999999999999999999999999874332111 10000 00
Q ss_pred cccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhh
Q 040845 756 DANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSL 809 (824)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~ 809 (824)
...... ........++.++.+++..||..||++||++.++++.|+++....
T Consensus 230 ~~~~~~---~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~ 280 (483)
T 3sv0_A 230 EKKVAT---SIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE 280 (483)
T ss_dssp HHHHHS---CHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred hccccc---cHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence 000000 001112345778999999999999999999999999999987643
No 229
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=337.95 Aligned_cols=252 Identities=21% Similarity=0.305 Sum_probs=200.3
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc----cchhhhHHHHHHHHhcCCCCcceeEEeee--ecCCe
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC----GRAFKSFDVECAMMKSIRHRNLVKVISSC--SNEEF 597 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~--~~~~~ 597 (824)
..++|++.+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++ .+...
T Consensus 3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 82 (305)
T 2wtk_C 3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK 82 (305)
T ss_dssp --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence 3578999999999999999999874 58999999987542 23456789999999999999999999998 44568
Q ss_pred eEEEEeccCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSS-NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
.++||||++++ +.+++... ...+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+..
T Consensus 83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 89999999876 77777653 356899999999999999999999 89999999999999999999999999999987
Q ss_pred cCCCCCccccccccccccccCccCcCCCC--CCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREGQ--VSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
..............||+.|+|||.+.+.. ++.++||||+|+++|||++|+.||...... .....+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~-------- 228 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY--KLFENIGKG-------- 228 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH--HHHHHHHHC--------
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH--HHHHHHhcC--------
Confidence 65433333334556899999999887643 478999999999999999999998752111 010000000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ...+..++..+.+++.+||..||++|||+.|++++
T Consensus 229 ----~-------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 229 ----S-------YAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp ----C-------CCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred ----C-------CCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 0 00112356678999999999999999999999986
No 230
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-39 Score=348.98 Aligned_cols=255 Identities=24% Similarity=0.330 Sum_probs=204.4
Q ss_pred hccCCCCceeeeccceEEEEEEE----CCCcEEEEEEeeccc----cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCC
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI----RDGMEVAVKVFNLQC----GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEE 596 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 596 (824)
.++|++.+.||+|+||.||+|+. .+++.||||+++... ....+.+.+|+++++.+ +||||+++++++..+.
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 36899999999999999999987 368999999986432 23345677899999999 6999999999999999
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
..++||||+++|+|.+++.... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999998755 6899999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCccccccccccccccCccCcCCC--CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREG--QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~--~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
+..... .......||+.|+|||++.+. .++.++|||||||++|||++|+.||........ ...+......
T Consensus 209 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~------ 280 (355)
T 1vzo_A 209 FVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS-QAEISRRILK------ 280 (355)
T ss_dssp CCGGGG-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC-HHHHHHHHHH------
T ss_pred cccCCC-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccch-HHHHHHHHhc------
Confidence 543221 222345699999999998753 478999999999999999999999975322211 1111111000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCC-----CHHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRI-----NAKEIVAKL 802 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-----t~~evl~~L 802 (824)
. ....+..++..+.+++.+||..||++|| +++|++++.
T Consensus 281 --~--------~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~ 323 (355)
T 1vzo_A 281 --S--------EPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHL 323 (355)
T ss_dssp --C--------CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred --c--------CCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCc
Confidence 0 0001123456788999999999999999 999999875
No 231
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=8.1e-39 Score=339.17 Aligned_cols=251 Identities=25% Similarity=0.386 Sum_probs=208.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEEe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 603 (824)
.+.|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.++...++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 356889999999999999999864 58999999997553 3445788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCc
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQS 683 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~ 683 (824)
|+++++|.+++... .+++.++..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||++.......
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ-- 173 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB--
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccc--
Confidence 99999999999753 5899999999999999999999 8999999999999999999999999999998764322
Q ss_pred cccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCch
Q 040845 684 MTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQE 763 (824)
Q Consensus 684 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (824)
.......|++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+....+.
T Consensus 174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~-------------- 237 (303)
T 3a7i_A 174 IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM--KVLFLIPKNNPP-------------- 237 (303)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSCCC--------------
T ss_pred cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH--HHHHHhhcCCCC--------------
Confidence 2223456899999999999999999999999999999999999998753221 111111110000
Q ss_pred hhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHH
Q 040845 764 DIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLL 803 (824)
Q Consensus 764 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~ 803 (824)
..+..++..+.+++.+||..||++|||+.|++++..
T Consensus 238 ----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~ 273 (303)
T 3a7i_A 238 ----TLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKF 273 (303)
T ss_dssp ----CCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHH
T ss_pred ----CCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChh
Confidence 001234566899999999999999999999998754
No 232
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2.2e-38 Score=347.00 Aligned_cols=273 Identities=23% Similarity=0.308 Sum_probs=202.3
Q ss_pred HHhhccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeec-------
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSN------- 594 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------- 594 (824)
....++|++.+.||+|+||+||+|+. .+|+.||||++.... ....+|+++++.++||||+++++++..
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34567899999999999999999986 468999999986432 223479999999999999999999843
Q ss_pred -------------------------------CCeeEEEEeccCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHh
Q 040845 595 -------------------------------EEFKALVLEYMPHGSLEKYLHS---SNYSLDIFQRLNIMIDVASALEYL 640 (824)
Q Consensus 595 -------------------------------~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~L 640 (824)
....++||||++ |+|.+.+.. ....+++..+..++.|+++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334889999997 588777653 335789999999999999999999
Q ss_pred hcCCCCCeEecCCCCCCeeeC-CCCcEEEeecccccccCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHH
Q 040845 641 HFGYSAPVIHCDLKPSNVLLD-DNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIM 718 (824)
Q Consensus 641 H~~~~~~ivH~Dlk~~Nill~-~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~ 718 (824)
| +.+|+||||||+||+++ .++.+||+|||+|+....... .....+|+.|+|||.+.+. .++.++||||+||+
T Consensus 158 H---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i 231 (383)
T 3eb0_A 158 H---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV 231 (383)
T ss_dssp H---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred H---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence 9 99999999999999997 689999999999987643322 2345689999999988765 48999999999999
Q ss_pred HHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh--ccc-------cccCchhhhhhhHHHHHHHHHHHHHHccccCC
Q 040845 719 LMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV--VDA-------NLLSQEDIHFVAKEQCVSFVFNLALECTVESP 789 (824)
Q Consensus 719 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP 789 (824)
+|||++|+.||.+.... ..+..++..........+ .++ ............+..++..+.+++.+||+.||
T Consensus 232 l~ell~g~~pf~~~~~~-~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 310 (383)
T 3eb0_A 232 FGELILGKPLFSGETSI-DQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP 310 (383)
T ss_dssp HHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred HHHHHhCCCCCCCCChH-HHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence 99999999999763221 112222221111100000 000 00011112222334567789999999999999
Q ss_pred CCCCCHHHHHHH--HHHHHH
Q 040845 790 EQRINAKEIVAK--LLKIRD 807 (824)
Q Consensus 790 ~~Rpt~~evl~~--L~~~~~ 807 (824)
++|||+.|+++| ++++++
T Consensus 311 ~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 311 DLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp GGSCCHHHHHTSGGGHHHHH
T ss_pred hhCCCHHHHhcCHHHHHHHh
Confidence 999999999864 444443
No 233
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=8.6e-39 Score=346.19 Aligned_cols=265 Identities=18% Similarity=0.275 Sum_probs=207.0
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccch-----------------hhhHHHHHHHHhcCCCCcceeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRA-----------------FKSFDVECAMMKSIRHRNLVKV 588 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~niv~l 588 (824)
.++|++.+.||+|+||.||+|+. +|+.||||++....... .+.+.+|+.++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999998 79999999987542211 1788999999999999999999
Q ss_pred EeeeecCCeeEEEEeccCCCCHHHH------hhhC-CCCCCHHHHHHHHHHHHHHHHHhhcCCC-CCeEecCCCCCCeee
Q 040845 589 ISSCSNEEFKALVLEYMPHGSLEKY------LHSS-NYSLDIFQRLNIMIDVASALEYLHFGYS-APVIHCDLKPSNVLL 660 (824)
Q Consensus 589 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~-~~ivH~Dlk~~Nill 660 (824)
++++.+.+..++||||+++|+|.++ +... ...+++..++.++.|++.|++||| + .+|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 9999999999999999999999998 6542 357899999999999999999999 7 999999999999999
Q ss_pred CCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCC-CCCc-cchHHHHHHHHHHHHhCCCCCcccccCcch
Q 040845 661 DDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREG-QVST-NGDVYSFGIMLMETFTRKKPTDELFNGEMT 738 (824)
Q Consensus 661 ~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~-~~DvwslG~~l~el~tg~~p~~~~~~~~~~ 738 (824)
+.++.+||+|||.+...... ......++..|+|||.+.+. .++. ++||||+|+++|||++|+.||.........
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~ 261 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL 261 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence 99999999999999875432 23445689999999999877 5666 999999999999999999999764332222
Q ss_pred hhhhhhhhCCCcc--hhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 739 LKHWVNDCLPIST--MEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 739 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+......... ...... ... .........++..+.+++.+||+.||++|||+.|++++
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~h 323 (348)
T 2pml_X 262 FNNIRTKNIEYPLDRNHFLYP-LTN--KKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKH 323 (348)
T ss_dssp HHHHTSCCCCCCCSSSSSTTT-TCC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred HHHHhccCcCCccchhhhhcc-ccc--cccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 2221111111100 000000 000 00011123456789999999999999999999999874
No 234
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.6e-39 Score=347.43 Aligned_cols=264 Identities=24% Similarity=0.297 Sum_probs=196.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE------ 596 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 596 (824)
.++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 578999999999999999999874 59999999985432 223467889999999999999999999997653
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
..++||||+ +++|.+++... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 459999999 78999999763 5899999999999999999999 99999999999999999999999999999987
Q ss_pred cCCCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--chh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TME 753 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 753 (824)
.... .....+|++|+|||++.+ ..++.++||||+||++|||++|+.||.+....+ .+........... ...
T Consensus 178 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~l~~i~~~~g~~~~~~~~ 251 (367)
T 1cm8_A 178 ADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD-QLKEIMKVTGTPPAEFVQ 251 (367)
T ss_dssp CCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHHCCCCHHHHH
T ss_pred cccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHH
Confidence 5322 234568999999998876 678999999999999999999999997632111 1111111111000 000
Q ss_pred hccc--------cccCchhhh-hhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVDA--------NLLSQEDIH-FVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~~--------~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.+.. ......... ......++..+.+++.+||..||++|||++|+++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~h 308 (367)
T 1cm8_A 252 RLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAH 308 (367)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred HhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcC
Confidence 0000 000000000 00112456779999999999999999999999885
No 235
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.6e-39 Score=353.00 Aligned_cols=255 Identities=12% Similarity=0.127 Sum_probs=183.8
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc---chhhhHHHHHHHHhcC--CCCcceeEE-------eee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG---RAFKSFDVECAMMKSI--RHRNLVKVI-------SSC 592 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~l~-------~~~ 592 (824)
..+|.+.+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|+.+++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 356889999999999999999875 689999999986532 3345677785544444 699988755 333
Q ss_pred ecC-----------------CeeEEEEeccCCCCHHHHhhhCCCCCCHHHH------HHHHHHHHHHHHHhhcCCCCCeE
Q 040845 593 SNE-----------------EFKALVLEYMPHGSLEKYLHSSNYSLDIFQR------LNIMIDVASALEYLHFGYSAPVI 649 (824)
Q Consensus 593 ~~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~LH~~~~~~iv 649 (824)
..+ ...++||||++ |+|.+++...+..+++..+ ..++.|+++||+||| +.+|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCc
Confidence 322 34799999998 8999999865434455556 778899999999999 99999
Q ss_pred ecCCCCCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCC--CCCCccchHHHHHHHHHHHHhCCC
Q 040845 650 HCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGRE--GQVSTNGDVYSFGIMLMETFTRKK 727 (824)
Q Consensus 650 H~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslG~~l~el~tg~~ 727 (824)
||||||+||+++.++.+||+|||+|+..... .....+|+.|+|||++.+ ..++.++|||||||++|||++|+.
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~ 291 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFL 291 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999865311 113457799999999987 679999999999999999999999
Q ss_pred CCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 728 PTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 728 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
||......... .|...... . .............++..+.+++.+||+.||++|||+.|++++
T Consensus 292 Pf~~~~~~~~~--~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 353 (371)
T 3q60_A 292 PFGLVTPGIKG--SWKRPSLR----V------PGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMET 353 (371)
T ss_dssp STTBCCTTCTT--CCCBCCTT----S------CCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTS
T ss_pred CCCCcCccccc--chhhhhhh----h------ccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 99875332111 01000000 0 000001111112456779999999999999999999999763
No 236
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.1e-38 Score=335.89 Aligned_cols=251 Identities=25% Similarity=0.305 Sum_probs=189.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||+||+|+.. +|+.||||+++.... ...+.+.++...++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 468999999999999999999874 689999999865422 22334455666688899999999999999999999999
Q ss_pred eccCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 603 EYMPHGSLEKYLHS---SNYSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 603 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
||++ |+|.+++.. ....+++..++.++.|++.|++||| +. +|+||||||+||+++.++.+||+|||++....
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9997 588887754 3457999999999999999999999 87 99999999999999999999999999998654
Q ss_pred CCCCccccccccccccccCccCc----CCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYG----REGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
... ......||+.|+|||.+ .+..++.++||||+|+++|||++|+.||..................+.
T Consensus 162 ~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~----- 233 (290)
T 3fme_A 162 DDV---AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ----- 233 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC-----
T ss_pred ccc---cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC-----
Confidence 322 22334689999999985 566789999999999999999999999975332222222222111110
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ....++..+.+++.+||+.||++|||+.|++++
T Consensus 234 -------~------~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~h 267 (290)
T 3fme_A 234 -------L------PADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 267 (290)
T ss_dssp -------C------CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred -------c------ccccCCHHHHHHHHHHhhcChhhCcCHHHHHhC
Confidence 0 012345678999999999999999999999884
No 237
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.3e-38 Score=351.28 Aligned_cols=197 Identities=21% Similarity=0.306 Sum_probs=171.6
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcC------CCCcceeEEeeeecCCee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSI------RHRNLVKVISSCSNEEFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 598 (824)
..+|++.+.||+|+||.||+|... +++.||||+++.. ....+.+.+|+.+++.+ .|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 457999999999999999999865 4899999998753 23345677888888877 577999999999999999
Q ss_pred EEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc--EEEeeccccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV--AHLSDFGIAK 675 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~--~kl~Dfg~a~ 675 (824)
++||||++ ++|.+++.... ..+++..+..++.||+.||+||| +.+|+||||||+||+++.++. +||+|||+|.
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999995 69999988665 45899999999999999999999 899999999999999999887 9999999997
Q ss_pred ccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCccc
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDEL 732 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~ 732 (824)
..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 251 ~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 251 YEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp ETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred ecCCc-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 64322 22346899999999999999999999999999999999999999764
No 238
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=9.2e-39 Score=336.29 Aligned_cols=244 Identities=20% Similarity=0.290 Sum_probs=199.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 601 (824)
.++|++.+.||+|+||.||+|... +++.||||++.... ......+.+|+..+..+ +||||+++++++.+++..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 468999999999999999999876 69999999987542 33456778899999999 999999999999999999999
Q ss_pred EeccCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC---------------
Q 040845 602 LEYMPHGSLEKYLHSSN---YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN--------------- 663 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~--------------- 663 (824)
|||+++++|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.+
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 99999999999997642 46899999999999999999999 9999999999999999844
Q ss_pred ----CcEEEeecccccccCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcch
Q 040845 664 ----MVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT 738 (824)
Q Consensus 664 ----~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~ 738 (824)
..+||+|||.+....... ...||+.|+|||.+.+. .++.++||||+||++|||++|.+|+... ..
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----~~ 236 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG----DQ 236 (289)
T ss_dssp ---CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS----HH
T ss_pred cCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch----hH
Confidence 489999999998764322 23489999999998766 5678999999999999999998875431 11
Q ss_pred hhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 739 LKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+.....+ ..+..++..+.+++.+||+.||++|||+.|++++
T Consensus 237 ~~~~~~~~~~-------------------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 280 (289)
T 1x8b_A 237 WHEIRQGRLP-------------------RIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 280 (289)
T ss_dssp HHHHHTTCCC-------------------CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HHHHHcCCCC-------------------CCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhC
Confidence 1111111000 0112345678999999999999999999999875
No 239
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=3.5e-38 Score=337.23 Aligned_cols=253 Identities=23% Similarity=0.301 Sum_probs=199.1
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--------cchhhhHHHHHHHHhcCCCCcceeEEeeeecC
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--------GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE 595 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 595 (824)
..++|.+.+.||+|+||.||+|... +++.||||++.... ......+.+|+++++.++||||+++++++..+
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 4578999999999999999999875 48999999986432 12234688999999999999999999998766
Q ss_pred CeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecc
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV---AHLSDFG 672 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg 672 (824)
. .++||||+++++|.+++.... .+++.+++.++.|++.||+||| +.+|+||||||+||+++.++. +||+|||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg 162 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFG 162 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred c-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCc
Confidence 5 799999999999999987654 7899999999999999999999 999999999999999987654 9999999
Q ss_pred cccccCCCCCccccccccccccccCccCcC---CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCC
Q 040845 673 IAKLLTGEDQSMTQTQTLATIGYMAPEYGR---EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPI 749 (824)
Q Consensus 673 ~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 749 (824)
++...... .......||+.|+|||++. ...++.++|||||||++|||++|+.||........ ....+.....
T Consensus 163 ~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~- 237 (322)
T 2ycf_A 163 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-LKDQITSGKY- 237 (322)
T ss_dssp TCEECCCC---HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSC-HHHHHHHTCC-
T ss_pred cceecccc---cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHH-HHHHHHhCcc-
Confidence 99875322 1223456899999999863 56789999999999999999999999976332221 1111111000
Q ss_pred cchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 750 STMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ........++..+.+++.+||..||++|||+.|++++
T Consensus 238 -----------~---~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h 275 (322)
T 2ycf_A 238 -----------N---FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRH 275 (322)
T ss_dssp -----------C---CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred -----------c---cCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhC
Confidence 0 0001122456778999999999999999999999863
No 240
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=3.3e-38 Score=333.86 Aligned_cols=269 Identities=25% Similarity=0.309 Sum_probs=203.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||.||+|+.+ +|+.||||++.... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 81 (299)
T 2r3i_A 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF 81 (299)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence 367899999999999999999876 68999999986543 223467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 603 EYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
||++ ++|.+++.... ..+++..+..++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+.......
T Consensus 82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 9997 69999997654 46889999999999999999999 8999999999999999999999999999998764322
Q ss_pred CccccccccccccccCccCcCCCC-CCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcch---h----
Q 040845 682 QSMTQTQTLATIGYMAPEYGREGQ-VSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTM---E---- 753 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~---~---- 753 (824)
.......+|+.|+|||.+.+.. ++.++||||+|+++|||++|+.||......+ ............... .
T Consensus 158 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (299)
T 2r3i_A 158 --RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTLGTPDEVVWPGVTSM 234 (299)
T ss_dssp --BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCTTTSTTGGGS
T ss_pred --cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHHHhCCCchhhhhHhhcC
Confidence 1223446899999999987765 7999999999999999999999997632211 111111111100000 0
Q ss_pred -hccccccCchhhh-hhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 -VVDANLLSQEDIH-FVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 -~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+......... ......++..+.+++.+||+.||++|||+.|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~h 284 (299)
T 2r3i_A 235 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH 284 (299)
T ss_dssp TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred cccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0000000000000 00112356778999999999999999999999874
No 241
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.7e-38 Score=340.22 Aligned_cols=256 Identities=19% Similarity=0.250 Sum_probs=203.6
Q ss_pred HHhhccCCCC-ceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCC-CCcceeEEeeeecCCe
Q 040845 523 FQATDKFSEN-NLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIR-HRNLVKVISSCSNEEF 597 (824)
Q Consensus 523 ~~~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~ 597 (824)
....++|.+. +.||+|+||.||+|... +++.||||++.... ......+.+|+.+++.++ ||||+++++++.+...
T Consensus 24 ~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~ 103 (327)
T 3lm5_A 24 ENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSE 103 (327)
T ss_dssp HHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSE
T ss_pred HhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCe
Confidence 3445677777 89999999999999876 58999999987543 233567889999999995 6999999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhC-CCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeeccc
Q 040845 598 KALVLEYMPHGSLEKYLHSS-NYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLSDFGI 673 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg~ 673 (824)
.++||||+++|+|.+++... ...+++.+++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+
T Consensus 104 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~ 180 (327)
T 3lm5_A 104 IILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGM 180 (327)
T ss_dssp EEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGG
T ss_pred EEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCcc
Confidence 99999999999999998654 357899999999999999999999 999999999999999987 78999999999
Q ss_pred ccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchh
Q 040845 674 AKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTME 753 (824)
Q Consensus 674 a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (824)
+....... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||......+. ..........
T Consensus 181 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~-~~~i~~~~~~----- 251 (327)
T 3lm5_A 181 SRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQET-YLNISQVNVD----- 251 (327)
T ss_dssp CEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH-HHHHHHTCCC-----
T ss_pred ccccCCcc---ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHH-HHHHHhcccc-----
Confidence 98764322 22335689999999999999999999999999999999999999976322111 1111110000
Q ss_pred hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||+.||++|||++|++++
T Consensus 252 -----------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 252 -----------YSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp -----------CCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred -----------cCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 0001112346678999999999999999999999876
No 242
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=5.3e-38 Score=342.29 Aligned_cols=266 Identities=21% Similarity=0.218 Sum_probs=194.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCC------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE------ 596 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 596 (824)
.++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999865 58999999987542 233466889999999999999999999997654
Q ss_pred eeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 597 FKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
..++||||+++ +|.+++.. .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCCC-CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 78999999964 78888853 5889999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--chhh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TMEV 754 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~ 754 (824)
.... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.+....+ .....+....... ....
T Consensus 177 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~~ 252 (371)
T 2xrw_A 177 AGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIEQLGTPCPEFMKK 252 (371)
T ss_dssp ----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC-CCCCCHHHHTT
T ss_pred cccc---cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHHH
Confidence 5322 12234568999999999999899999999999999999999999997632111 1111111000000 0000
Q ss_pred c----------cccccC--------c--hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 755 V----------DANLLS--------Q--EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 755 ~----------~~~~~~--------~--~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
. .+.... . ...........+..+.+++.+||..||++|||++|++++=
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp 320 (371)
T 2xrw_A 253 LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHP 320 (371)
T ss_dssp SCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred hhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCc
Confidence 0 000000 0 0001112234577899999999999999999999999863
No 243
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=3.2e-39 Score=337.99 Aligned_cols=253 Identities=23% Similarity=0.309 Sum_probs=203.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeee--cCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCS--NEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++. .....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999875 58999999987543 234567889999999999999999999874 4678899
Q ss_pred EEeccCCCCHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHhhcCCCCC-----eEecCCCCCCeeeCCCCcEEEeecc
Q 040845 601 VLEYMPHGSLEKYLHSSN---YSLDIFQRLNIMIDVASALEYLHFGYSAP-----VIHCDLKPSNVLLDDNMVAHLSDFG 672 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlk~~Nill~~~~~~kl~Dfg 672 (824)
||||+++++|.+++.... ..+++..++.++.|++.|++||| +.+ |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 999999999999997532 35899999999999999999999 777 9999999999999999999999999
Q ss_pred cccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcch
Q 040845 673 IAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTM 752 (824)
Q Consensus 673 ~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 752 (824)
.+....... .......+++.|+|||.+.+..++.++||||||+++|||++|+.||...... .....+.....
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~i~~~~~---- 233 (279)
T 2w5a_A 162 LARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK--ELAGKIREGKF---- 233 (279)
T ss_dssp HHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH--HHHHHHHHTCC----
T ss_pred hheeecccc--ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH--HHHHHHhhccc----
Confidence 998754322 1223346899999999998888999999999999999999999998763211 11111111000
Q ss_pred hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHH
Q 040845 753 EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLL 803 (824)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~ 803 (824)
. ..+..++..+.+++.+||+.||++|||+.|+++++.
T Consensus 234 --------~------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~ 270 (279)
T 2w5a_A 234 --------R------RIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 270 (279)
T ss_dssp --------C------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTT
T ss_pred --------c------cCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChh
Confidence 0 011234667899999999999999999999998764
No 244
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=351.52 Aligned_cols=348 Identities=20% Similarity=0.223 Sum_probs=231.0
Q ss_pred cEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccC
Q 040845 24 KVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWG 103 (824)
Q Consensus 24 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 103 (824)
+.++.++++++ .+|..+. ++|++|||++|++++..+..|.++++|++|+|++|.++++.+... .++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCC
Confidence 45666666666 4555443 466777777777766556666666666666666666665533322 2466666666666
Q ss_pred CeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCC
Q 040845 104 NNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPL 183 (824)
Q Consensus 104 n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l 183 (824)
|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|.++.+.. ..|..+++|++|+|++|.+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----RAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----TSSTTCTTCCEEEEESCCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-----hhccCCCCCCEEECCCCcC
Confidence 66665555556666777777777777766666667777777777777776665432 2356666666666666666
Q ss_pred CccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCc
Q 040845 184 DGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPD 263 (824)
Q Consensus 184 ~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 263 (824)
.++ .+..+.++++|+.|+|++|.+.+..+..|..+++|++|++++|.+.+..+.
T Consensus 165 ~~~--------------------------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 165 TSI--------------------------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp SSC--------------------------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccc--------------------------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 543 234467789999999999999988888999999999999999988777776
Q ss_pred cccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccch
Q 040845 264 SICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALI 343 (824)
Q Consensus 264 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 343 (824)
......+|+.|++++|++++..+..|..+++|+.|+|++|.++.++ +..|.++++|+
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------~~~~~~l~~L~ 275 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-----------------------GSMLHELLRLQ 275 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-----------------------TTSCTTCTTCC
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-----------------------hhhccccccCC
Confidence 6555567777777777777554456666666766666666665543 44555666666
Q ss_pred hhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCc
Q 040845 344 EIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNK 423 (824)
Q Consensus 344 ~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~ 423 (824)
.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++..-+ ...-...+..+.+.++.
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~~~~~~~~~ 354 (477)
T 2id5_A 276 EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRWRLNFNRQQ 354 (477)
T ss_dssp EEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTTSSCCTTCC
T ss_pred EEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhhccccCccC
Confidence 66777777766667777777777777777777776556667777777777777777763222 11111223334555566
Q ss_pred ccCCCCC
Q 040845 424 LKGEIPR 430 (824)
Q Consensus 424 l~~~~p~ 430 (824)
..|.-|.
T Consensus 355 ~~C~~p~ 361 (477)
T 2id5_A 355 PTCATPE 361 (477)
T ss_dssp CBEEESG
T ss_pred ceeCCch
Confidence 6555443
No 245
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=7.9e-39 Score=339.38 Aligned_cols=263 Identities=24% Similarity=0.320 Sum_probs=188.2
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.++++++||||+++++++...+..++||
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 4578999999999999999999854 58999999886542 334567888999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhh-------CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 603 EYMPHGSLEKYLHS-------SNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 603 e~~~~g~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
||+++++|.+++.. ....+++..++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.+.
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 99999999999874 2346899999999999999999999 8999999999999999999999999999998
Q ss_pred ccCCCCC---ccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc
Q 040845 676 LLTGEDQ---SMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST 751 (824)
Q Consensus 676 ~~~~~~~---~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 751 (824)
....... ........||+.|+|||.+.+ ..++.++||||+|+++|||++|+.||........... ......+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~~~~~~~~~ 248 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLML-TLQNDPPSLE 248 (303)
T ss_dssp HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHH-HHTSSCCCTT
T ss_pred eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHH-HhccCCCccc
Confidence 6643221 112234568999999998865 4689999999999999999999999976432221111 1111000000
Q ss_pred hhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 752 MEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+.. ....++..+.+++.+||+.||++|||+.|++++
T Consensus 249 ~~~~~~~----------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 288 (303)
T 2vwi_A 249 TGVQDKE----------MLKKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288 (303)
T ss_dssp C-----C----------CCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred cccccch----------hhhhhhHHHHHHHHHHccCChhhCcCHHHHhhC
Confidence 0000000 112345678999999999999999999999875
No 246
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.7e-38 Score=334.33 Aligned_cols=253 Identities=23% Similarity=0.337 Sum_probs=205.0
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc---------chhhhHHHHHHHHhcCC-CCcceeEEeeee
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG---------RAFKSFDVECAMMKSIR-HRNLVKVISSCS 593 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 593 (824)
..++|++.+.||+|+||.||+|+.+ +|+.||||++..... ...+.+.+|++++++++ ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 4578999999999999999999875 589999999875431 22456788999999996 999999999999
Q ss_pred cCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccc
Q 040845 594 NEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGI 673 (824)
Q Consensus 594 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~ 673 (824)
.....++||||+++++|.+++.... .+++.+++.++.|++.|++||| +.+|+||||||+||+++.++.+||+|||.
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred cCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccc
Confidence 9999999999999999999998654 6899999999999999999999 99999999999999999999999999999
Q ss_pred ccccCCCCCccccccccccccccCccCcC------CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC
Q 040845 674 AKLLTGEDQSMTQTQTLATIGYMAPEYGR------EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 674 a~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
+....... ......+++.|+|||.+. ...++.++||||+|+++|||++|+.||....... ..........
T Consensus 171 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~ 246 (298)
T 1phk_A 171 SCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQML-MLRMIMSGNY 246 (298)
T ss_dssp CEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHTCC
T ss_pred hhhcCCCc---ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHH-HHHHHhcCCc
Confidence 98764332 223356899999999874 4568899999999999999999999986532111 1111111100
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.. .......++..+.+++.+||+.||++|||+.|++++
T Consensus 247 ~~----------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (298)
T 1phk_A 247 QF----------------GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH 284 (298)
T ss_dssp CC----------------CTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred cc----------------CcccccccCHHHHHHHHHHccCCcccCCCHHHHHhC
Confidence 00 001112456779999999999999999999999863
No 247
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2.4e-38 Score=341.38 Aligned_cols=251 Identities=25% Similarity=0.347 Sum_probs=199.2
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeecccc-chhhhHHHHHHH-HhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCG-RAFKSFDVECAM-MKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~-~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||.||+|+. .+|+.||||++..... .....+..|..+ ++.++||||+++++++.+++..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 46788899999999999999986 4689999999875432 233445555555 78889999999999999999999999
Q ss_pred eccCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 603 EYMPHGSLEKYLHS---SNYSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 603 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
||+++ +|.+++.. ....+++..++.++.|++.||+||| +. +|+||||||+||+++.++.+||+|||++....
T Consensus 130 e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 130 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp CCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 99975 99988864 3457999999999999999999999 76 99999999999999999999999999998763
Q ss_pred CCCCccccccccccccccCccCcC----CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 679 GEDQSMTQTQTLATIGYMAPEYGR----EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 679 ~~~~~~~~~~~~~~~~y~aPE~~~----~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
.. .......||+.|+|||++. ...++.++|||||||++|||++|+.||.............+....+
T Consensus 206 ~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~------ 276 (340)
T 3an0_A 206 DS---VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSP------ 276 (340)
T ss_dssp CH---HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCC------
T ss_pred cc---cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCCC------
Confidence 21 1223346899999999864 3478999999999999999999999997532221112211111000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. .....++..+.+++.+||..||++|||+.|++++
T Consensus 277 ------~------~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 311 (340)
T 3an0_A 277 ------Q------LPADKFSAEFVDFTSQCLKKNSKERPTYPELMQH 311 (340)
T ss_dssp ------C------CCGGGSCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred ------C------CCcccCCHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 0 0112346679999999999999999999999885
No 248
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=1.3e-38 Score=371.31 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=206.0
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecc---ccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQ---CGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 599 (824)
..++|++.+.||+|+||.||+|+.+ +++.||||+++.. .....+.+..|..++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999875 4889999999754 234456778899999988 7999999999999999999
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCC
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~ 679 (824)
+||||+++|+|.+++...+ .+++.+++.++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 419 lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 9999999999999998765 6899999999999999999999 99999999999999999999999999999986432
Q ss_pred CCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 680 EDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 680 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. .......||+.|+|||++.+..++.++|||||||++|||++|+.||......+ ....+... .
T Consensus 495 ~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~-~~~~i~~~------------~- 558 (674)
T 3pfq_A 495 DG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE-LFQSIMEH------------N- 558 (674)
T ss_dssp TT--CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHSS------------C-
T ss_pred CC--cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHH-HHHHHHhC------------C-
Confidence 22 22344579999999999999999999999999999999999999997632111 11111110 0
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCH-----HHHHHH
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINA-----KEIVAK 801 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~-----~evl~~ 801 (824)
...+..++.++.+|+.+||+.||++||++ +|+++|
T Consensus 559 -------~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h 598 (674)
T 3pfq_A 559 -------VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH 598 (674)
T ss_dssp -------CCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSS
T ss_pred -------CCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcC
Confidence 00112346678999999999999999997 666653
No 249
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=3.7e-38 Score=342.90 Aligned_cols=268 Identities=22% Similarity=0.253 Sum_probs=203.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecC-----Cee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNE-----EFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 598 (824)
.++|++.+.||+|+||.||+|... +++.||||++..... ...+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999865 588999999875432 3346788999999999999999999998654 468
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||++ |+|.+++... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 106 ~iv~e~~~-~~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ--HLSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEcccC-cCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 99999996 5999999764 5899999999999999999999 9999999999999999999999999999998764
Q ss_pred CCCCc-cccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 679 GEDQS-MTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 679 ~~~~~-~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .............. +...
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~~~~~~-~~~~ 257 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGILGSPSQ-EDLN 257 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHHCSCCH-HHHH
T ss_pred CCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHhCCCCH-HHHH
Confidence 33221 12244579999999997654 458999999999999999999999997643221 11111111111100 0000
Q ss_pred c------------cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 757 A------------NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 757 ~------------~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ...............++..+.+++.+||+.||++|||+.|++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 314 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAH 314 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 0 00000000001112456779999999999999999999999875
No 250
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=342.06 Aligned_cols=257 Identities=25% Similarity=0.351 Sum_probs=199.8
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeec---
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSN--- 594 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~--- 594 (824)
.++....++|++.+.||+|+||.||+|++. +|+.||||++... ....+.+.+|+.+++++ +||||+++++++..
T Consensus 17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC-cccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 334445788999999999999999999874 6899999998754 33457788999999999 79999999999976
Q ss_pred ---CCeeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEee
Q 040845 595 ---EEFKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSD 670 (824)
Q Consensus 595 ---~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~D 670 (824)
....++||||+++|+|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~D 172 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVD 172 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECC
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEee
Confidence 568899999999999999998643 46899999999999999999999 89999999999999999999999999
Q ss_pred cccccccCCCCCccccccccccccccCccCcC-----CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhh
Q 040845 671 FGIAKLLTGEDQSMTQTQTLATIGYMAPEYGR-----EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVND 745 (824)
Q Consensus 671 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~ 745 (824)
||++....... .......|++.|+|||.+. +..++.++|||||||++|||++|+.||........ .......
T Consensus 173 fg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~ 249 (326)
T 2x7f_A 173 FGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRA-LFLIPRN 249 (326)
T ss_dssp CTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHH-HHHHHHS
T ss_pred CcCceecCcCc--cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHH-HHHhhcC
Confidence 99998653221 1223346899999999886 56789999999999999999999999865322111 1111000
Q ss_pred hCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 746 CLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+ .. ....++..+.+++.+||..||++|||+.|++++
T Consensus 250 ~~~---------~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 287 (326)
T 2x7f_A 250 PAP---------RL---------KSKKWSKKFQSFIESCLVKNHSQRPATEQLMKH 287 (326)
T ss_dssp CCC---------CC---------SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred ccc---------cC---------CccccCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 000 00 011245678999999999999999999999885
No 251
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.7e-38 Score=369.25 Aligned_cols=258 Identities=24% Similarity=0.394 Sum_probs=207.5
Q ss_pred hccCCCCceeeeccceEEEEEEECC----CcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD----GMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 600 (824)
.++|++.+.||+|+||.||+|.+.. +..||||.++... ....+.+.+|+.++++++||||+++++++.+ +..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceEE
Confidence 4678889999999999999998742 4679999886543 2334678899999999999999999999854 56889
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||||+++|+|.+++......+++..++.++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 468 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~ 544 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 544 (656)
T ss_dssp EEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-
T ss_pred EEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCC
Confidence 99999999999999877767999999999999999999999 899999999999999999999999999999876433
Q ss_pred CCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhhccccc
Q 040845 681 DQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANL 759 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (824)
.. .......+|+.|+|||.+.+..++.++|||||||++|||++ |..||.+....+ ....+....
T Consensus 545 ~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~--~~~~i~~~~------------ 609 (656)
T 2j0j_A 545 TY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRIENGE------------ 609 (656)
T ss_dssp ----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH--HHHHHHHTC------------
T ss_pred cc-eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHH--HHHHHHcCC------------
Confidence 22 22233457789999999988899999999999999999997 889987632211 111111100
Q ss_pred cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 760 LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
....+..++..+.+++.+||..||++|||+.|+++.|+++.+.
T Consensus 610 ------~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 610 ------RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ------CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 0111234567899999999999999999999999999998754
No 252
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=3.8e-38 Score=335.59 Aligned_cols=254 Identities=23% Similarity=0.378 Sum_probs=198.5
Q ss_pred hhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCC--CCcceeEEeeeecCCeeEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIR--HRNLVKVISSCSNEEFKAL 600 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~l 600 (824)
..++|++.+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ |+||+++++++.++...++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 357799999999999999999998889999999987543 234567889999999997 5999999999999999999
Q ss_pred EEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCC
Q 040845 601 VLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGE 680 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~ 680 (824)
||| +.+++|.+++.... .+++.+++.++.|+++||+||| +.+|+||||||+||++++ +.+||+|||++......
T Consensus 106 v~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~ 179 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPD 179 (313)
T ss_dssp EEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC----
T ss_pred EEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccCc
Confidence 999 55789999998765 7899999999999999999999 899999999999999964 89999999999876544
Q ss_pred CCccccccccccccccCccCcCC-----------CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCC
Q 040845 681 DQSMTQTQTLATIGYMAPEYGRE-----------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPI 749 (824)
Q Consensus 681 ~~~~~~~~~~~~~~y~aPE~~~~-----------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~ 749 (824)
..........|++.|+|||.+.+ ..++.++||||||+++|||++|+.||............+......
T Consensus 180 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~- 258 (313)
T 3cek_A 180 TTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHE- 258 (313)
T ss_dssp ----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSC-
T ss_pred cccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccc-
Confidence 33333344568999999998865 468889999999999999999999997643221111111111000
Q ss_pred cchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 750 STMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
...+..++..+.+++.+||..||++|||+.|++++-
T Consensus 259 -----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~ 294 (313)
T 3cek_A 259 -----------------IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHP 294 (313)
T ss_dssp -----------------CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred -----------------cCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCc
Confidence 000112245688999999999999999999999864
No 253
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=7.9e-38 Score=328.74 Aligned_cols=254 Identities=22% Similarity=0.317 Sum_probs=205.2
Q ss_pred HHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeE
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKA 599 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 599 (824)
....++|++.+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+....+
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~ 97 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFY 97 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEE
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEE
Confidence 344578999999999999999999875 68999999987543 234567889999999999999999999999999999
Q ss_pred EEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC---CcEEEeecccccc
Q 040845 600 LVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN---MVAHLSDFGIAKL 676 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~---~~~kl~Dfg~a~~ 676 (824)
+||||+++++|.+++.... .+++.+++.++.|++.|++||| +.+|+||||||+||+++.+ +.+||+|||++..
T Consensus 98 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~ 173 (287)
T 2wei_A 98 IVGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (287)
T ss_dssp EEECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGT
T ss_pred EEEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCccee
Confidence 9999999999999987654 6899999999999999999999 8999999999999999754 4799999999986
Q ss_pred cCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
...... .....+++.|+|||.+.+ .++.++||||+|+++|+|++|+.||......+ ....+......
T Consensus 174 ~~~~~~---~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~-------- 240 (287)
T 2wei_A 174 FQQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYD-ILKRVETGKYA-------- 240 (287)
T ss_dssp BCCCSS---CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHCCCC--------
T ss_pred ecCCCc---cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHcCCCC--------
Confidence 543222 223458899999998865 48999999999999999999999987632111 01111110000
Q ss_pred ccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 757 ANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
........++..+.+++.+||..||++|||+.|++++
T Consensus 241 --------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h 277 (287)
T 2wei_A 241 --------FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (287)
T ss_dssp --------CCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred --------CCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcC
Confidence 0011112346678999999999999999999999985
No 254
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.8e-38 Score=344.49 Aligned_cols=264 Identities=23% Similarity=0.295 Sum_probs=185.5
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecC------
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNE------ 595 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------ 595 (824)
..++|++.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~ 106 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF 106 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence 3578999999999999999999864 58999999986432 23456778999999999999999999998654
Q ss_pred CeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 596 EFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
...++|+||+ +++|.+++.. ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++
T Consensus 107 ~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~ 180 (367)
T 2fst_X 107 NDVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLAR 180 (367)
T ss_dssp CCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC-----
T ss_pred CeEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeeccccc
Confidence 5679999999 6899998875 36899999999999999999999 9999999999999999999999999999998
Q ss_pred ccCCCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
..... .....+|++|+|||++.+ ..++.++||||+||++|||++|+.||.+.... ..+..+...... ...+.
T Consensus 181 ~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~-p~~~~ 253 (367)
T 2fst_X 181 HTADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILRLVGT-PGAEL 253 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHHHHCS-CCHHH
T ss_pred ccccc-----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCC-CCHHH
Confidence 65321 234568999999998876 67899999999999999999999999763211 111111111110 00000
Q ss_pred ccc-----------cccCchhhhh-hhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDA-----------NLLSQEDIHF-VAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~-----------~~~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
... .+........ .....+++.+.+|+.+||+.||++|||+.|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 254 LKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp HTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 000 0000000000 0112346778999999999999999999999886
No 255
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=7.4e-38 Score=343.52 Aligned_cols=265 Identities=24% Similarity=0.327 Sum_probs=196.4
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCC------eeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE------FKA 599 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~~ 599 (824)
..+|++.+.||+|+||+||+|+...+..||+|++.... ....+|+++++.++||||+++++++.... ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 35799999999999999999998877779999885432 22346999999999999999999985433 378
Q ss_pred EEEeccCCCCHHHHhh--hCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEEeecccccc
Q 040845 600 LVLEYMPHGSLEKYLH--SSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD-DNMVAHLSDFGIAKL 676 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~--~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~Dfg~a~~ 676 (824)
+||||++++.+..... .....+++..+..++.|+++||+||| +.+|+||||||+||+++ .++.+||+|||+|+.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 9999997643333322 22357899999999999999999999 99999999999999999 799999999999987
Q ss_pred cCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--chh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TME 753 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 753 (824)
...... .....+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+.... ..+..++....... ...
T Consensus 192 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~~g~p~~~~~~ 267 (394)
T 4e7w_A 192 LIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKVLGTPSREQIK 267 (394)
T ss_dssp CCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHH
T ss_pred ccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHhCCCCHHHHH
Confidence 643322 2345689999999988765 5899999999999999999999999763221 11222221111100 000
Q ss_pred hccccc-------cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVDANL-------LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~~~~-------~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..++.. ..........+..++.++.+++.+||+.||++|||+.|+++|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 268 TMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp HHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred hhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 000000 000111111222456789999999999999999999999876
No 256
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=335.29 Aligned_cols=269 Identities=22% Similarity=0.298 Sum_probs=197.3
Q ss_pred hccCCCCceeeeccceEEEEEEECC-CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeee-----------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCS----------- 593 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~----------- 593 (824)
.++|++.+.||+|+||.||+|.... ++.||||++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 4679999999999999999998764 8999999997665566678899999999999999999999873
Q ss_pred ---cCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEEe
Q 040845 594 ---NEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD-DNMVAHLS 669 (824)
Q Consensus 594 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~ 669 (824)
+....++||||++ |+|.+++... .+++..++.++.|++.||+||| +.+|+||||||+||+++ +++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEc
Confidence 4467899999997 6999999753 5889999999999999999999 99999999999999997 57799999
Q ss_pred ecccccccCCCCC-ccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC
Q 040845 670 DFGIAKLLTGEDQ-SMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 670 Dfg~a~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
|||++........ ........++..|+|||.+.+ ..++.++||||||+++|||++|+.||......+ ..........
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~~~~~~~ 242 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE-QMQLILESIP 242 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHHHSC
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHhcC
Confidence 9999987643211 112233457899999998765 678999999999999999999999997643211 1111111111
Q ss_pred CCcch---hh-------ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 748 PISTM---EV-------VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 748 ~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..... +. ..................++..+.+++.+||+.||++|||++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (320)
T 2i6l_A 243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSH 306 (320)
T ss_dssp CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTS
T ss_pred CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCC
Confidence 00000 00 00000000000011112467789999999999999999999999875
No 257
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=4.4e-38 Score=333.58 Aligned_cols=253 Identities=24% Similarity=0.346 Sum_probs=194.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeec----------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSN---------- 594 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---------- 594 (824)
.++|++.+.||+|+||.||+|+.. +++.||||++... ....+.+.+|+.++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 568999999999999999999875 6899999998643 3445778899999999999999999998754
Q ss_pred ---CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 040845 595 ---EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDF 671 (824)
Q Consensus 595 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df 671 (824)
....++||||+++|+|.+++......+++.+++.++.|+++|++||| +.+|+||||||+||+++.++.+||+||
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeC
Confidence 45778999999999999999877667889999999999999999999 899999999999999999999999999
Q ss_pred ccccccCCCCC------------ccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcch
Q 040845 672 GIAKLLTGEDQ------------SMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT 738 (824)
Q Consensus 672 g~a~~~~~~~~------------~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~ 738 (824)
|.+........ ........|++.|+|||.+.+. .++.++||||+||++|||++ ||.........
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~ 237 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNI 237 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHH
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHH
Confidence 99986542211 1122345689999999998754 68999999999999999998 54321111111
Q ss_pred hhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 739 LKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
...+...... .. ...+..++..+.+++.+||+.||++|||+.|++++
T Consensus 238 ~~~~~~~~~~------~~----------~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 284 (303)
T 1zy4_A 238 LKKLRSVSIE------FP----------PDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNS 284 (303)
T ss_dssp HHHHHSTTCC------CC----------TTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred HHhccccccc------cC----------ccccccchHHHHHHHHHHHhcCcccCcCHHHHhCC
Confidence 1111100000 00 00112345668899999999999999999999874
No 258
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.6e-37 Score=333.05 Aligned_cols=269 Identities=26% Similarity=0.352 Sum_probs=203.7
Q ss_pred hhccCCCCceeeeccceEEEEEEE--CCCcEEEEEEeecccc--chhhhHHHHHHHHhcC---CCCcceeEEeeee----
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARI--RDGMEVAVKVFNLQCG--RAFKSFDVECAMMKSI---RHRNLVKVISSCS---- 593 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l~~~~~---- 593 (824)
+.++|++.+.||+|+||.||+|+. .+|+.||||++..... .....+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 457899999999999999999987 3588999999875432 2234667788877766 8999999999987
Q ss_pred -cCCeeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeec
Q 040845 594 -NEEFKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDF 671 (824)
Q Consensus 594 -~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Df 671 (824)
.....++||||++ |+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecC
Confidence 5678899999997 69999998654 35899999999999999999999 999999999999999999999999999
Q ss_pred ccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc
Q 040845 672 GIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST 751 (824)
Q Consensus 672 g~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 751 (824)
|.+...... .......+|..|+|||.+.+..++.++||||+|+++|||++|+.||......+ ..............
T Consensus 165 g~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~i~~~~~~~~~ 240 (326)
T 1blx_A 165 GLARIYSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGKILDVIGLPGE 240 (326)
T ss_dssp CSCCCCCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCG
T ss_pred cccccccCC---CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHcCCCCc
Confidence 999765321 22334568999999999998899999999999999999999999997632211 11111111100000
Q ss_pred hhhc------cccccC-chhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 752 MEVV------DANLLS-QEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 752 ~~~~------~~~~~~-~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.... ...... ...........++..+.+++.+||..||++|||+.|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 297 (326)
T 1blx_A 241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSH 297 (326)
T ss_dssp GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 0000 000000 0000001112456778999999999999999999999864
No 259
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=7.3e-38 Score=346.40 Aligned_cols=263 Identities=24% Similarity=0.323 Sum_probs=195.5
Q ss_pred ccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeec------CCeeE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSN------EEFKA 599 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~~~ 599 (824)
.+|++.+.||+|+||.||+|++. +|+.||||++.... ....+|+++++.++||||+++++++.. ....+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46889999999999999999975 58999999986432 233479999999999999999998843 22467
Q ss_pred EEEeccCCCCHHHHhh---hCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-CcEEEeeccccc
Q 040845 600 LVLEYMPHGSLEKYLH---SSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN-MVAHLSDFGIAK 675 (824)
Q Consensus 600 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-~~~kl~Dfg~a~ 675 (824)
+||||+++ ++.+.+. .....+++..+..++.||++||+||| +.+|+||||||+|||++.+ +.+||+|||+|+
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 99999975 6766654 23457899999999999999999999 9999999999999999955 678999999998
Q ss_pred ccCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc--h
Q 040845 676 LLTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST--M 752 (824)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~ 752 (824)
.+..... .....+|+.|+|||++.+. .++.++||||+||++|||++|+.||.+... ...+..++........ .
T Consensus 206 ~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-~~~l~~i~~~lg~p~~~~~ 281 (420)
T 1j1b_A 206 QLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-VDQLVEIIKVLGTPTREQI 281 (420)
T ss_dssp ECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-HHHHHHHHHHHCSCCHHHH
T ss_pred hcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHHHHHHHhCCCCHHHH
Confidence 7643322 2335689999999988765 789999999999999999999999976321 1122222221111000 0
Q ss_pred hhccccc-------cCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 753 EVVDANL-------LSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 753 ~~~~~~~-------~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
....+.. ..........+..++.++.+|+.+||..||++|||+.|+++|
T Consensus 282 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~h 337 (420)
T 1j1b_A 282 REMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAH 337 (420)
T ss_dssp HHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCC
Confidence 0000000 000001111122456789999999999999999999999875
No 260
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=6.7e-38 Score=345.83 Aligned_cols=266 Identities=22% Similarity=0.244 Sum_probs=201.1
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCC--------CCcceeEEeeee---
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR--------HRNLVKVISSCS--- 593 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~--- 593 (824)
.++|++.+.||+|+||+||+|+.. +++.||||+++.. ....+.+.+|+.+++.++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 367999999999999999999864 5889999998643 334567889999999996 788999999987
Q ss_pred -cCCeeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCC------
Q 040845 594 -NEEFKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLDDNM------ 664 (824)
Q Consensus 594 -~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~------ 664 (824)
+....++||||+ ++++.+++.... ..+++..++.++.|++.||+||| ++ +|+||||||+||+++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhhh
Confidence 566889999999 556666665443 57999999999999999999999 87 999999999999999775
Q ss_pred -------------------------------------------cEEEeecccccccCCCCCccccccccccccccCccCc
Q 040845 665 -------------------------------------------VAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYG 701 (824)
Q Consensus 665 -------------------------------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~ 701 (824)
.+||+|||.|...... .....||+.|+|||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhh
Confidence 7999999999875432 2334689999999999
Q ss_pred CCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcch-----hhhhhhhhCCCcc---------hhhcccc--c--c-C-
Q 040845 702 REGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMT-----LKHWVNDCLPIST---------MEVVDAN--L--L-S- 761 (824)
Q Consensus 702 ~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~-----~~~~~~~~~~~~~---------~~~~~~~--~--~-~- 761 (824)
.+..++.++|||||||++|||++|+.||......+.. ............. .+..... . . .
T Consensus 266 ~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (397)
T 1wak_A 266 IGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKL 345 (397)
T ss_dssp HTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCC
T ss_pred cCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCcccccccccc
Confidence 9889999999999999999999999999764322111 1111110000000 0000000 0 0 0
Q ss_pred -c------hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 762 -Q------EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 762 -~------~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. .......+..++..+.+|+.+||+.||++|||++|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 392 (397)
T 1wak_A 346 KPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392 (397)
T ss_dssp CCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTS
T ss_pred CCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhC
Confidence 0 000011224567789999999999999999999999875
No 261
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=7.9e-38 Score=340.92 Aligned_cols=263 Identities=21% Similarity=0.258 Sum_probs=198.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCee----
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFK---- 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 598 (824)
.++|.+.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.+++.++||||+++++++......
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 568999999999999999999865 589999999875422 2356788999999999999999999999876654
Q ss_pred --EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 599 --ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 599 --~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
++||||++ ++|.+++.. .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999996 688888743 4899999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--chh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TME 753 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 753 (824)
.... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+ ............. ...
T Consensus 194 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 267 (371)
T 4exu_A 194 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQ 267 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCCCHHHHT
T ss_pred cccC-----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHhCCCcHHHHH
Confidence 5322 234568999999998877 678999999999999999999999997632111 1111111111000 000
Q ss_pred hcc--------ccccCc-hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVD--------ANLLSQ-EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~--------~~~~~~-~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
... ...... ..........++..+.+++.+||+.||++|||++|++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 000 000000 000011112457789999999999999999999999876
No 262
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=343.16 Aligned_cols=261 Identities=22% Similarity=0.334 Sum_probs=201.9
Q ss_pred hhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
..++|++.+.||+|+||.||+|++.. .||+|+++... ....+.+.+|+.++++++||||+++++++.++...++||
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 35789999999999999999998763 59999986542 233466788999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC-
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED- 681 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~- 681 (824)
||+++++|.+++...+..+++.+++.++.|++.|++||| +.+|+||||||+||+++ ++.+||+|||++.......
T Consensus 109 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~ 184 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA 184 (319)
T ss_dssp BCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC-------
T ss_pred ecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccccccc
Confidence 999999999999887767999999999999999999999 89999999999999998 6799999999987543211
Q ss_pred --CccccccccccccccCccCcCC---------CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc
Q 040845 682 --QSMTQTQTLATIGYMAPEYGRE---------GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS 750 (824)
Q Consensus 682 --~~~~~~~~~~~~~y~aPE~~~~---------~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~ 750 (824)
.........|++.|+|||.+.. ..++.++||||||+++|||++|+.||........ .........
T Consensus 185 ~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-~~~~~~~~~--- 260 (319)
T 2y4i_B 185 GRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAI-IWQMGTGMK--- 260 (319)
T ss_dssp ---CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHH-HHHHHTTCC---
T ss_pred cccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH-HHHhccCCC---
Confidence 1122233458999999998864 3578899999999999999999999976322111 111100000
Q ss_pred chhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHhhc
Q 040845 751 TMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDSLL 810 (824)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~~~ 810 (824)
+... +..++..+.+++.+||..||++|||+.|+++.|+++.+...
T Consensus 261 ------~~~~---------~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~ 305 (319)
T 2y4i_B 261 ------PNLS---------QIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNR 305 (319)
T ss_dssp ------CCCC---------CSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----
T ss_pred ------CCCC---------cCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhc
Confidence 0000 01234558899999999999999999999999999876543
No 263
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=1.5e-37 Score=335.18 Aligned_cols=265 Identities=20% Similarity=0.274 Sum_probs=203.7
Q ss_pred hccCCCCceeeeccceEEEEEEE-C-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc------ceeEEeeeecCCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-R-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN------LVKVISSCSNEEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 597 (824)
.++|++.+.||+|+||.||+|.. . +++.||||+++.. ....+.+.+|+++++.++|++ ++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 36899999999999999999986 3 5889999998643 334567888999999887654 9999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC--------------
Q 040845 598 KALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD-------------- 662 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-------------- 662 (824)
.++||||+ +++|.+++.... ..+++.++..++.|++.||+||| +.+|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 889999997665 46889999999999999999999 999999999999999987
Q ss_pred -----CCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcc
Q 040845 663 -----NMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM 737 (824)
Q Consensus 663 -----~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~ 737 (824)
++.+||+|||++...... .....||+.|+|||++.+..++.++||||+||++|||++|+.||......+
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~- 241 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE- 241 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH-
T ss_pred cccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH-
Confidence 678999999999864322 223468999999999999899999999999999999999999997632211
Q ss_pred hhhhhhhhhCCCc--chhhc---------cccccC-------------chhhhhhhHHHHHHHHHHHHHHccccCCCCCC
Q 040845 738 TLKHWVNDCLPIS--TMEVV---------DANLLS-------------QEDIHFVAKEQCVSFVFNLALECTVESPEQRI 793 (824)
Q Consensus 738 ~~~~~~~~~~~~~--~~~~~---------~~~~~~-------------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp 793 (824)
....+.....+.. ..... ...+.. ...........++..+.+++.+||+.||++||
T Consensus 242 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 321 (339)
T 1z57_A 242 HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI 321 (339)
T ss_dssp HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence 1111111111000 00000 000000 00000111234678899999999999999999
Q ss_pred CHHHHHHH
Q 040845 794 NAKEIVAK 801 (824)
Q Consensus 794 t~~evl~~ 801 (824)
|++|++++
T Consensus 322 t~~ell~h 329 (339)
T 1z57_A 322 TLREALKH 329 (339)
T ss_dssp CHHHHTTS
T ss_pred CHHHHhcC
Confidence 99999875
No 264
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.6e-38 Score=346.01 Aligned_cols=269 Identities=21% Similarity=0.274 Sum_probs=185.0
Q ss_pred ccCCC-CceeeeccceEEEEEEEC---CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeee--cCCeeEE
Q 040845 527 DKFSE-NNLIGRGGFGSVYKARIR---DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCS--NEEFKAL 600 (824)
Q Consensus 527 ~~~~~-~~~lg~G~~g~V~~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~~l 600 (824)
+.|++ .++||+|+||+||+|+++ +++.||||++... .....+.+|+.+++.++||||+++++++. .....++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 45666 458999999999999875 4789999998643 33457889999999999999999999994 4778999
Q ss_pred EEeccCCCCHHHHhhhCC--------CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----CCCCcEEE
Q 040845 601 VLEYMPHGSLEKYLHSSN--------YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL----DDNMVAHL 668 (824)
Q Consensus 601 v~e~~~~g~L~~~l~~~~--------~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill----~~~~~~kl 668 (824)
||||++ ++|.+++.... ..+++..++.++.|++.||+||| +.+|+||||||+||++ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999996 58888875321 24899999999999999999999 9999999999999999 67899999
Q ss_pred eecccccccCCCCC-ccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCc--------ch
Q 040845 669 SDFGIAKLLTGEDQ-SMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGE--------MT 738 (824)
Q Consensus 669 ~Dfg~a~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~--------~~ 738 (824)
+|||+|+.+..... ........||+.|+|||++.+. .++.++||||+||++|||++|+.||....... ..
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~ 253 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ 253 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHH
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHH
Confidence 99999987643221 1223446789999999988774 58999999999999999999999997532210 11
Q ss_pred hhhhhhhhCCCcchhhccccccCc----------hhh------hh--hhHHHHHHHHHHHHHHccccCCCCCCCHHHHHH
Q 040845 739 LKHWVNDCLPISTMEVVDANLLSQ----------EDI------HF--VAKEQCVSFVFNLALECTVESPEQRINAKEIVA 800 (824)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------~~--~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~ 800 (824)
+..++............+...... ... .. ......+..+.+|+.+||+.||++|||++|+++
T Consensus 254 l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 254 LDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 111111111000000000000000 000 00 000012456889999999999999999999998
Q ss_pred H
Q 040845 801 K 801 (824)
Q Consensus 801 ~ 801 (824)
|
T Consensus 334 h 334 (405)
T 3rgf_A 334 D 334 (405)
T ss_dssp S
T ss_pred C
Confidence 6
No 265
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=8.2e-38 Score=339.22 Aligned_cols=269 Identities=23% Similarity=0.265 Sum_probs=201.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHHHHhcCCCCcceeEEeeeecC-----Cee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECAMMKSIRHRNLVKVISSCSNE-----EFK 598 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 598 (824)
.++|++.+.||+|+||.||+|++. +|+.||||++..... .....+.+|+.++++++||||+++++++..+ ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999875 589999999864332 3345678899999999999999999987654 678
Q ss_pred EEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccC
Q 040845 599 ALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLT 678 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~ 678 (824)
++||||++ ++|.+++... .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++....
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999996 5999998764 5899999999999999999999 8999999999999999999999999999998764
Q ss_pred CCCCcc--------ccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC-C
Q 040845 679 GEDQSM--------TQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL-P 748 (824)
Q Consensus 679 ~~~~~~--------~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~-~ 748 (824)
...... ......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .......... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~~~~ 242 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH-QLLLIFGIIGTP 242 (353)
T ss_dssp ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHHCCC
T ss_pred cccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHHhCCC
Confidence 322111 1223468999999997654 678999999999999999999999997632211 1111111000 0
Q ss_pred C--cch---------hhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 749 I--STM---------EVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 749 ~--~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. ... +...................++..+.+++.+||+.||++|||++|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 306 (353)
T 2b9h_A 243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEH 306 (353)
T ss_dssp CSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred chhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcC
Confidence 0 000 0000000000000011123567789999999999999999999999875
No 266
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=344.58 Aligned_cols=251 Identities=21% Similarity=0.377 Sum_probs=190.1
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEEec
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVLEY 604 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 604 (824)
..+|...+.||+|+||+||.....+++.||||++... ....+.+|+++++.+ +||||+++++++.+....++||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT---TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 3568888999999999976655567999999998643 234467899999999 799999999999999999999999
Q ss_pred cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-----CCcEEEeecccccccCC
Q 040845 605 MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD-----NMVAHLSDFGIAKLLTG 679 (824)
Q Consensus 605 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-----~~~~kl~Dfg~a~~~~~ 679 (824)
++ |+|.+++........+.+++.++.|+++||+||| +.+|+||||||+||+++. ...+||+|||+|+....
T Consensus 100 ~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~ 175 (432)
T 3p23_A 100 CA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV 175 (432)
T ss_dssp CS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC--
T ss_pred CC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccC
Confidence 96 5999999877655666677899999999999999 899999999999999953 33688999999987653
Q ss_pred CCCc-cccccccccccccCccCcC---CCCCCccchHHHHHHHHHHHHh-CCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 680 EDQS-MTQTQTLATIGYMAPEYGR---EGQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 680 ~~~~-~~~~~~~~~~~y~aPE~~~---~~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
.... .......||++|+|||++. ...++.++||||+||++|||++ |..||........ ... ........
T Consensus 176 ~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~---~~~---~~~~~~~~ 249 (432)
T 3p23_A 176 GRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQA---NIL---LGACSLDC 249 (432)
T ss_dssp ----------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHH---HHH---TTCCCCTT
T ss_pred CCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHH---HHH---hccCCccc
Confidence 3221 2334467999999999987 4567889999999999999999 8888865322111 000 00000000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.......+..+.+++.+||+.||++|||+.|+++|
T Consensus 250 ------------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~h 284 (432)
T 3p23_A 250 ------------LHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKH 284 (432)
T ss_dssp ------------SCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred ------------cCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhC
Confidence 00112345568899999999999999999999953
No 267
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=5.1e-37 Score=336.07 Aligned_cols=200 Identities=25% Similarity=0.346 Sum_probs=171.1
Q ss_pred hhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CC-----cceeEEeeeecCCe
Q 040845 525 ATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HR-----NLVKVISSCSNEEF 597 (824)
Q Consensus 525 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~~ 597 (824)
..++|++.+.||+|+||+||+|... +++.||||+++.. ......+..|+.+++.++ |+ +|+++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3578999999999999999999865 5889999998743 233566778899988885 55 49999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC--CCCcEEEeecccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD--DNMVAHLSDFGIA 674 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~--~~~~~kl~Dfg~a 674 (824)
.++||||++ ++|.+++.... ..+++..+..++.|++.|++|||.. +.+|+||||||+||+++ .++.+||+|||+|
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a 208 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence 999999995 59999998764 4689999999999999999999921 36899999999999994 5788999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCccc
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDEL 732 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~ 732 (824)
+..... .....+|+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 209 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 209 CQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp EETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred eecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 876422 22356899999999999999999999999999999999999999763
No 268
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.6e-37 Score=340.26 Aligned_cols=358 Identities=17% Similarity=0.150 Sum_probs=284.4
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEcc
Q 040845 23 LKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLW 102 (824)
Q Consensus 23 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 102 (824)
++......+...+..+..++++++|++|++++|.+++ +| ++..+++|++|+|++|++++++ ...+++|++|+|+
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACD 93 (457)
T ss_dssp HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECC
T ss_pred HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECc
Confidence 3334444555555667789999999999999999995 45 7999999999999999999874 3468999999999
Q ss_pred CCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCC
Q 040845 103 GNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNP 182 (824)
Q Consensus 103 ~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 182 (824)
+|++++. + ++.+++|++|+|++|++++. + ++++++|++|++++|+++.++ +..+++|++|++++|.
T Consensus 94 ~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~--------l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 94 SNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID--------VSHNTQLTELDCHLNK 159 (457)
T ss_dssp SSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC--------CTTCTTCCEEECTTCS
T ss_pred CCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec--------cccCCcCCEEECCCCC
Confidence 9999964 3 88999999999999999974 3 899999999999999998853 6789999999999995
Q ss_pred CCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCC
Q 040845 183 LDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIP 262 (824)
Q Consensus 183 l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 262 (824)
..+..+ + + -.++|+.|++++|++++. | +..+++|+.|++++|++++. .+..+++|++|++++|++++ +|
T Consensus 160 ~~~~~~--~-~-~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 160 KITKLD--V-T-PQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp CCCCCC--C-T-TCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred cccccc--c-c-cCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 443322 1 1 245799999999998874 3 78888999999999998864 37888999999999999986 44
Q ss_pred ccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccc
Q 040845 263 DSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKAL 342 (824)
Q Consensus 263 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 342 (824)
+..+++|+.|++++|++++.. ++.+++|+.|++++|+ |+.|++++|.+.+.+| ++.+++|
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD-------------LLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC-------------CSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC-------------CCEEECCCCccCCccc--ccccccC
Confidence 778889999999999988654 4567788888888765 4567788998877666 5788999
Q ss_pred hhhhcccccccccCCC--------ccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCccc
Q 040845 343 IEIDFSMNNFSGIIPM--------EIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYL 414 (824)
Q Consensus 343 ~~L~l~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 414 (824)
+.|++++|...+.+|. .+..+++|+.|++++|++++. + ++.+++|+.|++++|+|++ ++.|
T Consensus 289 ~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L 357 (457)
T 3bz5_A 289 KELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSV 357 (457)
T ss_dssp CCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTG
T ss_pred CEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------cccc
Confidence 9999999987666553 256677888888888888863 3 8888888888888888874 2466
Q ss_pred ceeeccCCcccCCCCCCCCccccccccccCCc
Q 040845 415 KDLNLSFNKLKGEIPRGGSFGNFSAESFKGNE 446 (824)
Q Consensus 415 ~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~ 446 (824)
..|++++|.++|. +.+..+....+..|.
T Consensus 358 ~~L~l~~n~l~g~----~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 358 GKIPALNNNFEAE----GQTITMPKETLTNNS 385 (457)
T ss_dssp GGSSGGGTSEEEE----EEEEECCCBCCBTTB
T ss_pred ccccccCCcEEec----ceeeecCccccccCc
Confidence 7778888888876 133444555555554
No 269
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=2.1e-37 Score=332.05 Aligned_cols=254 Identities=25% Similarity=0.300 Sum_probs=179.4
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc-chhhhHHHHHH-HHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-RAFKSFDVECA-MMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||.||+|... +|+.||||++..... .....+..|+. +++.++||||+++++++.+++..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 468899999999999999999875 689999999975432 23344555555 778889999999999999999999999
Q ss_pred eccCCCCHHHHhhh----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 603 EYMPHGSLEKYLHS----SNYSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 603 e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
||+++ +|.+++.. ....+++..+..++.|++.|++||| +. +|+||||||+||+++.++.+||+|||++...
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99975 88887763 2357899999999999999999999 77 9999999999999999999999999999865
Q ss_pred CCCCCccccccccccccccCccCc----CCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchh
Q 040845 678 TGEDQSMTQTQTLATIGYMAPEYG----REGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTME 753 (824)
Q Consensus 678 ~~~~~~~~~~~~~~~~~y~aPE~~----~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (824)
.... ......||+.|+|||.+ .+..++.++||||||+++|||++|+.||..................
T Consensus 177 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~------ 247 (327)
T 3aln_A 177 VDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDP------ 247 (327)
T ss_dssp --------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCC------
T ss_pred cccc---ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCC------
Confidence 4322 22234689999999998 4567899999999999999999999999753221111111000000
Q ss_pred hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
+.. .......++..+.+++.+||..||++|||+.|++++
T Consensus 248 ---~~~------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 286 (327)
T 3aln_A 248 ---PQL------SNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKH 286 (327)
T ss_dssp ---CCC------CCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred ---CCC------CCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhC
Confidence 000 000112345678999999999999999999999875
No 270
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=5.8e-37 Score=333.47 Aligned_cols=275 Identities=21% Similarity=0.254 Sum_probs=192.7
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeecCC--
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSNEE-- 596 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-- 596 (824)
.......++|++.+.||+|+||.||+|+.. +|+.||||++... ......+.+|++.++.++||||+++++++....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 445666789999999999999999999875 5899999998643 333456677888899999999999999986533
Q ss_pred -----eeEEEEeccCCCCHHHHhhh---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC-CCcEE
Q 040845 597 -----FKALVLEYMPHGSLEKYLHS---SNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD-NMVAH 667 (824)
Q Consensus 597 -----~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~-~~~~k 667 (824)
..++||||+++ ++.+.+.. ....+++..+..++.|++.|++|||.. +.+|+||||||+||+++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLP-SVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTST-TTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCC-CCCeecCcCCHHHEEEeCCCCcEE
Confidence 27899999976 55544432 335788999999999999999999932 679999999999999996 89999
Q ss_pred EeecccccccCCCCCccccccccccccccCccCcCCC-CCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhh
Q 040845 668 LSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREG-QVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDC 746 (824)
Q Consensus 668 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~ 746 (824)
|+|||++........ .....||+.|+|||++.+. .++.++|||||||++|||++|+.||...... .....+....
T Consensus 173 l~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~-~~~~~~~~~~ 248 (360)
T 3e3p_A 173 LCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA-GQLHEIVRVL 248 (360)
T ss_dssp ECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHH
T ss_pred EeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH-HHHHHHHHHc
Confidence 999999987643322 2344689999999988655 4899999999999999999999999763221 1222222211
Q ss_pred CCCc--chhhccc----------cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 747 LPIS--TMEVVDA----------NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 747 ~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
.... .....++ ...............++..+.+++.+||+.||++|||+.|++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 315 (360)
T 3e3p_A 249 GCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH 315 (360)
T ss_dssp CCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence 1110 0000110 00000000000111356789999999999999999999999875
No 271
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.9e-37 Score=333.04 Aligned_cols=254 Identities=20% Similarity=0.249 Sum_probs=176.0
Q ss_pred hhccCCCC-ceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcceeEEeeeec----CCee
Q 040845 525 ATDKFSEN-NLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNLVKVISSCSN----EEFK 598 (824)
Q Consensus 525 ~~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~ 598 (824)
..++|.+. ++||+|+||.||+|... +|+.||||++... .....+....++.++||||+++++++.. ....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 35688885 46999999999999876 5899999998642 1222333445677799999999999876 4568
Q ss_pred EEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg~a 674 (824)
++||||+++|+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~ 178 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccc
Confidence 99999999999999998654 46899999999999999999999 899999999999999976 456999999999
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
....... .....+|+.|+|||++.+..++.++||||+|+++|||++|+.||........... ....
T Consensus 179 ~~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~-~~~~--------- 244 (336)
T 3fhr_A 179 KETTQNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG-MKRR--------- 244 (336)
T ss_dssp EEC--------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-------------------------
T ss_pred eeccccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh-HHHh---------
Confidence 8654221 2334579999999999888899999999999999999999999976432211000 0000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
....... ........++..+.+++.+||+.||++|||+.|++++-
T Consensus 245 ~~~~~~~---~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp 289 (336)
T 3fhr_A 245 IRLGQYG---FPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHP 289 (336)
T ss_dssp ------C---CCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSH
T ss_pred hhccccc---cCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCc
Confidence 0000000 00011124567789999999999999999999999854
No 272
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-36 Score=333.66 Aligned_cols=334 Identities=19% Similarity=0.209 Sum_probs=237.4
Q ss_pred CCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCC
Q 040845 94 PNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSL 173 (824)
Q Consensus 94 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L 173 (824)
++++.|++++|.++...+..+..+++|++|+|++|.+++..+..|.++++|++|+|++|.++.++. ..+..+++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCC
Confidence 444444444444443333334444455555555555444444444445555555555554444332 124444455
Q ss_pred cEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcc
Q 040845 174 THISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLE 253 (824)
Q Consensus 174 ~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 253 (824)
++|+|++|.+..+++..|.. .++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.|+++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS 194 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC
T ss_pred CEEECCCCccCcCCHHHhcC--CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc
Confidence 55555555544443332211 23455555555555555566788899999999999999854 35678899999999
Q ss_pred cccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCC
Q 040845 254 YNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLP 333 (824)
Q Consensus 254 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~ 333 (824)
+|.+++ +...++|+.|++++|.+...... ..++|+.|++++|.++.++ .+..+++|+.|++++|.+++..|
T Consensus 195 ~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 195 YNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SSCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEES
T ss_pred cccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcCh
Confidence 999874 34456899999999999865433 2478999999999999874 67889999999999999998889
Q ss_pred ccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcc
Q 040845 334 LEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSY 413 (824)
Q Consensus 334 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 413 (824)
..|.++++|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+| +..+++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~ 340 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHT 340 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCC
T ss_pred hHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhcc
Confidence 999999999999999999985 5667788999999999999998 57778899999999999999998 444 778899
Q ss_pred cceeeccCCcccCCCCCCCCccccccccccCCccccCCC
Q 040845 414 LKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 414 L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
|+.|++++|+|+|.... ..+..+....+.+++..|.++
T Consensus 341 L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 341 LKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 99999999999985432 234455556677888888765
No 273
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.7e-37 Score=344.91 Aligned_cols=251 Identities=22% Similarity=0.358 Sum_probs=188.3
Q ss_pred cCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEEeccC
Q 040845 528 KFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVLEYMP 606 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~ 606 (824)
.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+.+++++ +||||+++++++.++...++||||++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 34556889999999998776667999999998643 345678899999876 89999999999999999999999995
Q ss_pred CCCHHHHhhhCCCC------CCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCC-------------CcEE
Q 040845 607 HGSLEKYLHSSNYS------LDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDN-------------MVAH 667 (824)
Q Consensus 607 ~g~L~~~l~~~~~~------~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~-------------~~~k 667 (824)
|+|.+++...... .++..++.++.||+.||+||| +.+|+||||||+||+++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 6999999865421 123345789999999999999 8999999999999999654 4899
Q ss_pred EeecccccccCCCCCcc--ccccccccccccCccCcCC-------CCCCccchHHHHHHHHHHHHh-CCCCCcccccCcc
Q 040845 668 LSDFGIAKLLTGEDQSM--TQTQTLATIGYMAPEYGRE-------GQVSTNGDVYSFGIMLMETFT-RKKPTDELFNGEM 737 (824)
Q Consensus 668 l~Dfg~a~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~-------~~~~~~~DvwslG~~l~el~t-g~~p~~~~~~~~~ 737 (824)
|+|||+|.......... ......||++|+|||++.+ ..++.++||||+||++|||+| |+.||......+
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~- 247 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRE- 247 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHH-
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhH-
Confidence 99999998765432221 2234569999999998865 568999999999999999999 899987533221
Q ss_pred hhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 738 TLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+......... ........++.++.+++.+||+.||++|||+.|++++
T Consensus 248 --~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h 296 (434)
T 2rio_A 248 --SNIIRGIFSLDE-------------MKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRH 296 (434)
T ss_dssp --HHHHHTCCCCCC-------------CTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --HHHhcCCCCccc-------------ccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhC
Confidence 111111111000 0111123467789999999999999999999999863
No 274
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-38 Score=334.03 Aligned_cols=245 Identities=25% Similarity=0.338 Sum_probs=192.5
Q ss_pred HHHhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc------chhhhHHHHHHHHhcC----CCCcceeEEe
Q 040845 522 LFQATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG------RAFKSFDVECAMMKSI----RHRNLVKVIS 590 (824)
Q Consensus 522 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l----~h~niv~l~~ 590 (824)
.....++|++.+.||+|+||.||+|+.. +++.||||++..... .....+.+|+.+++++ +|+||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 3455678999999999999999999864 589999999865432 1234456799999988 8999999999
Q ss_pred eeecCCeeEEEEec-cCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEE
Q 040845 591 SCSNEEFKALVLEY-MPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD-DNMVAHL 668 (824)
Q Consensus 591 ~~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl 668 (824)
++...+..++|||| +++++|.+++.... .+++..++.++.|+++||+||| +.+|+||||||+||+++ .++.+||
T Consensus 106 ~~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl 181 (312)
T 2iwi_A 106 WFETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKL 181 (312)
T ss_dssp EC-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEE
T ss_pred EEecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEE
Confidence 99999999999999 78999999998755 6899999999999999999999 89999999999999999 8999999
Q ss_pred eecccccccCCCCCccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhC
Q 040845 669 SDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCL 747 (824)
Q Consensus 669 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~ 747 (824)
+|||++....... .....|+..|+|||++.+..+ +.++||||+|+++|||++|+.||.... .......
T Consensus 182 ~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~ 250 (312)
T 2iwi_A 182 IDFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ-------EILEAEL 250 (312)
T ss_dssp CCCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHTCC
T ss_pred EEcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH-------HHhhhcc
Confidence 9999998764322 234458999999998877666 458999999999999999999986521 1111000
Q ss_pred CCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 748 PISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
..+..++..+.+++.+||+.||++|||+.|++++
T Consensus 251 --------------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~ 284 (312)
T 2iwi_A 251 --------------------HFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLD 284 (312)
T ss_dssp --------------------CCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred --------------------CCcccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0012345678899999999999999999999874
No 275
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=335.20 Aligned_cols=263 Identities=20% Similarity=0.248 Sum_probs=196.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeecccc--chhhhHHHHHHHHhcCCCCcceeEEeeeecCCe-----
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG--RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEF----- 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 597 (824)
.++|.+.+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 467999999999999999999875 589999999865422 234678899999999999999999999977654
Q ss_pred -eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 598 -KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 598 -~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
.++||||++ ++|.+++.. .+++.++..++.|++.||+||| +.+|+||||||+||+++.++.+||+|||++..
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999996 588887743 5899999999999999999999 89999999999999999999999999999986
Q ss_pred cCCCCCccccccccccccccCccCcCC-CCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCc--chh
Q 040845 677 LTGEDQSMTQTQTLATIGYMAPEYGRE-GQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIS--TME 753 (824)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~--~~~ 753 (824)
.... .....+|+.|+|||.+.+ ..++.++||||+||++|||++|+.||......+ .+........... ...
T Consensus 176 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~~~~~~~~~~~~ 249 (353)
T 3coi_A 176 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILKVTGVPGTEFVQ 249 (353)
T ss_dssp -------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHHHHCBCCHHHHT
T ss_pred CCCC-----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHhCCCCHHHHH
Confidence 4321 234568999999998876 678999999999999999999999997632111 1111111100000 000
Q ss_pred ---------hccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 754 ---------VVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 754 ---------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
............-......++..+.+++.+||..||++|||++|++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~h 306 (353)
T 3coi_A 250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 306 (353)
T ss_dssp TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence 000000000000000112456789999999999999999999999875
No 276
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=6.7e-37 Score=332.36 Aligned_cols=265 Identities=22% Similarity=0.272 Sum_probs=200.7
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CC-cEEEEEEeeccccchhhhHHHHHHHHhcCCCCc------ceeEEeeeecCCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DG-MEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN------LVKVISSCSNEEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 597 (824)
.++|++.+.||+|+||+||+|... ++ +.||||+++.. ....+.+.+|+.+++.++|++ ++.+++++.....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 468999999999999999999875 34 78999998643 344567888999999998766 8999999999999
Q ss_pred eEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeee----------------
Q 040845 598 KALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLL---------------- 660 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill---------------- 660 (824)
.++||||+ ++++.+++.... ..+++.++..++.|++.||+||| +.+|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 667777776544 56899999999999999999999 9999999999999999
Q ss_pred ---CCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcc
Q 040845 661 ---DDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEM 737 (824)
Q Consensus 661 ---~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~ 737 (824)
+.++.+||+|||++....... ....||+.|+|||++.+..++.++||||+||++|||++|+.||......+
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~- 246 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEHH-----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE- 246 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSCC-----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-
T ss_pred ccccCCCcEEEeecCccccccccc-----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH-
Confidence 567899999999998643221 23468999999999999999999999999999999999999997632211
Q ss_pred hhhhhhhhhCCCc--chhhc-------cc--cccCc-------------hhhhhhhHHHHHHHHHHHHHHccccCCCCCC
Q 040845 738 TLKHWVNDCLPIS--TMEVV-------DA--NLLSQ-------------EDIHFVAKEQCVSFVFNLALECTVESPEQRI 793 (824)
Q Consensus 738 ~~~~~~~~~~~~~--~~~~~-------~~--~~~~~-------------~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp 793 (824)
..........+.. ..... .. .+... ..........++..+.+++.+||+.||++||
T Consensus 247 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 326 (355)
T 2eu9_A 247 HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI 326 (355)
T ss_dssp HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc
Confidence 1111111110000 00000 00 00000 0000011123466899999999999999999
Q ss_pred CHHHHHHH
Q 040845 794 NAKEIVAK 801 (824)
Q Consensus 794 t~~evl~~ 801 (824)
|+.|++++
T Consensus 327 t~~e~l~h 334 (355)
T 2eu9_A 327 TLAEALLH 334 (355)
T ss_dssp CHHHHTTS
T ss_pred CHHHHhcC
Confidence 99999864
No 277
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=8.3e-38 Score=333.71 Aligned_cols=243 Identities=23% Similarity=0.310 Sum_probs=201.0
Q ss_pred HhhccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc------hhhhHHHHHHHHhcCC--CCcceeEEeeeec
Q 040845 524 QATDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR------AFKSFDVECAMMKSIR--HRNLVKVISSCSN 594 (824)
Q Consensus 524 ~~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l~~~~~~ 594 (824)
...++|++.+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|+.++++++ |+||+++++++.+
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~ 119 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER 119 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence 34578999999999999999999864 5899999999765321 2355678999999996 5999999999999
Q ss_pred CCeeEEEEeccCC-CCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC-CCCcEEEeecc
Q 040845 595 EEFKALVLEYMPH-GSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD-DNMVAHLSDFG 672 (824)
Q Consensus 595 ~~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~-~~~~~kl~Dfg 672 (824)
++..++||||+.+ ++|.+++.... .+++..++.++.|+++||+||| +.+|+||||||+||+++ +++.+||+|||
T Consensus 120 ~~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 120 PDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp SSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred CCcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 9999999999976 89999998754 6899999999999999999999 99999999999999999 78999999999
Q ss_pred cccccCCCCCccccccccccccccCccCcCCCCC-CccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcc
Q 040845 673 IAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQV-STNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPIST 751 (824)
Q Consensus 673 ~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~ 751 (824)
++....... .....||+.|+|||++.+..+ +.++||||||+++|||++|+.||.... .......
T Consensus 196 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~-------~~~~~~~---- 260 (320)
T 3a99_A 196 SGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE-------EIIRGQV---- 260 (320)
T ss_dssp TCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH-------HHHHCCC----
T ss_pred ccccccccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChh-------hhhcccc----
Confidence 998764322 233468999999998877665 688999999999999999999986521 1111000
Q ss_pred hhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 752 MEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
. .+..++..+.+++.+||..||++|||++|++++
T Consensus 261 --------~--------~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h 294 (320)
T 3a99_A 261 --------F--------FRQRVSSECQHLIRWCLALRPSDRPTFEEIQNH 294 (320)
T ss_dssp --------C--------CSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred --------c--------ccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 0 011245678899999999999999999999874
No 278
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=2.9e-37 Score=337.59 Aligned_cols=266 Identities=15% Similarity=0.235 Sum_probs=200.0
Q ss_pred hccCCCCceeeeccceEEEEEEE-CCCcEEEEEEeeccccchhhhHHHHHHHHhcCC-----------CCcceeEEeeee
Q 040845 526 TDKFSENNLIGRGGFGSVYKARI-RDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-----------HRNLVKVISSCS 593 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 593 (824)
.++|++.+.||+|+||+||+|+. .+++.||||++... ....+.+.+|+.++++++ |+||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 36799999999999999999986 46899999998643 234567788999999886 899999999987
Q ss_pred cCC----eeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeC------
Q 040845 594 NEE----FKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLD------ 661 (824)
Q Consensus 594 ~~~----~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~------ 661 (824)
... ..++||||+ +++|.+++.... ..+++..+..++.|++.||+||| +. +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCCc
Confidence 644 789999999 889999998643 45899999999999999999999 87 999999999999994
Q ss_pred CCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCc-----
Q 040845 662 DNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGE----- 736 (824)
Q Consensus 662 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~----- 736 (824)
..+.+||+|||++...... .....+|+.|+|||++.+..++.++|||||||++|||++|+.||.......
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~ 247 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDD 247 (373)
T ss_dssp TEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHH
T ss_pred CcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChH
Confidence 4458999999999876432 223468999999999998899999999999999999999999997532111
Q ss_pred chhhhhhhhhCCCcch---------hhccc----------cccC---chhhhhhhHHHHHHHHHHHHHHccccCCCCCCC
Q 040845 737 MTLKHWVNDCLPISTM---------EVVDA----------NLLS---QEDIHFVAKEQCVSFVFNLALECTVESPEQRIN 794 (824)
Q Consensus 737 ~~~~~~~~~~~~~~~~---------~~~~~----------~~~~---~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt 794 (824)
................ ..+.. .... ........+..++..+.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt 327 (373)
T 1q8y_A 248 DHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRAD 327 (373)
T ss_dssp HHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBC
T ss_pred HHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCC
Confidence 1111111111100000 00000 0000 000011123467888999999999999999999
Q ss_pred HHHHHHH
Q 040845 795 AKEIVAK 801 (824)
Q Consensus 795 ~~evl~~ 801 (824)
++|++++
T Consensus 328 ~~ell~h 334 (373)
T 1q8y_A 328 AGGLVNH 334 (373)
T ss_dssp HHHHHTC
T ss_pred HHHHhhC
Confidence 9999875
No 279
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=5.8e-37 Score=327.37 Aligned_cols=252 Identities=23% Similarity=0.300 Sum_probs=184.3
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccccc--hhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGR--AFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.++|++.+.||+|+||.||+|++. +|+.||||++...... ..+.+.++..+++.++||||+++++++.+++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 467889999999999999999875 6899999999755322 2234455566788889999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCC-CeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSA-PVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~-~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
||+ ++.+..+.......+++..+..++.|+++|++||| +. +|+||||||+||+++.++.+||+|||++.......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 55666666654557899999999999999999999 75 99999999999999999999999999997654322
Q ss_pred CccccccccccccccCccCcC-----CCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhcc
Q 040845 682 QSMTQTQTLATIGYMAPEYGR-----EGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVD 756 (824)
Q Consensus 682 ~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 756 (824)
......+++.|+|||.+. ...++.++||||||+++|||++|+.||..................+.
T Consensus 180 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~------- 249 (318)
T 2dyl_A 180 ---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPL------- 249 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCC-------
T ss_pred ---cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCC-------
Confidence 223346899999999984 45688999999999999999999999975322211111111110000
Q ss_pred ccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHH
Q 040845 757 ANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAK 801 (824)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~ 801 (824)
......++..+.+++.+||..||++|||++|++++
T Consensus 250 ----------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 250 ----------LPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp ----------CCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred ----------CCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 00011245678999999999999999999999875
No 280
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9.5e-36 Score=327.36 Aligned_cols=311 Identities=21% Similarity=0.216 Sum_probs=220.8
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccE
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEV 98 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 98 (824)
.++++++|++++|.++...+..|+.+++|++|+|++|.+++..+.+|..+++|++|+|++|++++.++... .++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh-cCCCCCCE
Confidence 46888889999988886555557888889999999998887777788888888888888888887765533 36888888
Q ss_pred EEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEEC
Q 040845 99 LYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISL 178 (824)
Q Consensus 99 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~L 178 (824)
|+|++|+++...+..|..+++|++|+|++|++++..+..|.++++|++|++++|+++.++ +..+++|++|++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~l~~L~~L~l 193 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LSLIPSLFHANV 193 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--------GGGCTTCSEEEC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--------cccccccceeec
Confidence 888888888555555688888888888888888777888888888888888888887653 455678888888
Q ss_pred cCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCc
Q 040845 179 SNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 179 s~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
++|.+.++. .+.+ |+.|++++|.+... |.. ..++|++|++++|.++
T Consensus 194 ~~n~l~~~~-------~~~~------------------------L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 194 SYNLLSTLA-------IPIA------------------------VEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp CSSCCSEEE-------CCSS------------------------CSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred ccccccccC-------CCCc------------------------ceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence 888776441 1234 44555555554422 211 1245555555555555
Q ss_pred ccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccc
Q 040845 259 GSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRN 338 (824)
Q Consensus 259 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 338 (824)
+. ..+..+++|+.|++++|++++..|..|..+++|++|+|++|+++.+|..+..+++|+.|++++|+++ .+|..+..
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 316 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccc
Confidence 32 3455555666666666666655566666666666666666666666665656666777777777666 45556677
Q ss_pred cccchhhhcccccccccCCCccCCCCCCCeEEccCccccc
Q 040845 339 LKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEG 378 (824)
Q Consensus 339 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 378 (824)
+++|+.|++++|+++.. + +..+++|+.|++++|.++.
T Consensus 317 l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred cCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 77788888888887754 2 6677889999999998875
No 281
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.8e-36 Score=346.60 Aligned_cols=335 Identities=19% Similarity=0.206 Sum_probs=248.0
Q ss_pred CCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCC
Q 040845 93 LPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKS 172 (824)
Q Consensus 93 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~ 172 (824)
+++++.|++++|.++...+..+..+++|++|+|++|.+++..+..|+++++|++|+|++|.++.++. ..|.++++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCC
Confidence 3455555555555554444445555555555555555555555555555555555555555555432 12455555
Q ss_pred CcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEc
Q 040845 173 LTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDL 252 (824)
Q Consensus 173 L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 252 (824)
|++|+|++|.+.++++..|.. .++|++|++++|.+++..|..|..+++|+.|+|++|.+++.. +..+++|+.|++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred CCEEEeeCCCCCCCCHHHhcc--CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 555555555555444433322 235555555556665666677888999999999999998653 566789999999
Q ss_pred ccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcC
Q 040845 253 EYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPL 332 (824)
Q Consensus 253 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ 332 (824)
++|.+++ +....+|+.|++++|.+....+.. .++|+.|+|++|.++.. ..+..+++|+.|+|++|.+++..
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEE
T ss_pred ccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCC
Confidence 9999874 345578999999999998655443 36899999999999985 56888999999999999999999
Q ss_pred CccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCc
Q 040845 333 PLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLS 412 (824)
Q Consensus 333 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 412 (824)
|..|.++++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++ +| +..++
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~ 345 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHH 345 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTC
T ss_pred HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcC
Confidence 9999999999999999999996 5677788999999999999999 678889999999999999999984 44 67889
Q ss_pred ccceeeccCCcccCCCCCCCCccccccccccCCccccCCC
Q 040845 413 YLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 413 ~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
+|+.|++++|+|+|.++. ..+..+....+.+++..|+.+
T Consensus 346 ~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 999999999999986543 234556666788888888864
No 282
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=8.1e-37 Score=347.62 Aligned_cols=272 Identities=24% Similarity=0.309 Sum_probs=202.5
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeec------CCe
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSN------EEF 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 597 (824)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 378999999999999999999864 58999999986542 3345678899999999999999999999765 677
Q ss_pred eEEEEeccCCCCHHHHhhhCC--CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCc---EEEeecc
Q 040845 598 KALVLEYMPHGSLEKYLHSSN--YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMV---AHLSDFG 672 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~---~kl~Dfg 672 (824)
.++||||+++|+|.+++.... ..+++..++.++.|++.|++||| +.+|+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 899999999999999998654 35888899999999999999999 899999999999999997665 9999999
Q ss_pred cccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcch
Q 040845 673 IAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTM 752 (824)
Q Consensus 673 ~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 752 (824)
.+........ .....||+.|+|||.+.+..++.++||||+|+++|||++|+.||..... ...|..........
T Consensus 170 ~a~~~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~----~~~~~~~i~~~~~~ 242 (676)
T 3qa8_A 170 YAKELDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ----PVQWHGKVREKSNE 242 (676)
T ss_dssp CCCBTTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH----HHHSSTTCC-----
T ss_pred cccccccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc----hhhhhhhhhcccch
Confidence 9987643322 2345689999999999999999999999999999999999999965321 11221111110000
Q ss_pred -----hhcccccc--CchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHH-----HHHHHHHHHH
Q 040845 753 -----EVVDANLL--SQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKE-----IVAKLLKIRD 807 (824)
Q Consensus 753 -----~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~e-----vl~~L~~~~~ 807 (824)
+....... ............++..+.+++.+||..||++|||+.| +.+.++++.+
T Consensus 243 ~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL~ 309 (676)
T 3qa8_A 243 HIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSILS 309 (676)
T ss_dssp -CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHHC
T ss_pred hhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHHh
Confidence 00000000 0000001112346788999999999999999999988 4555555543
No 283
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=9.3e-36 Score=311.68 Aligned_cols=232 Identities=14% Similarity=0.063 Sum_probs=186.1
Q ss_pred ccCCCCceeeeccceEEEEEEECC-CcEEEEEEeecccc---chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEEE
Q 040845 527 DKFSENNLIGRGGFGSVYKARIRD-GMEVAVKVFNLQCG---RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 527 ~~~~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 602 (824)
++|++.+.||+|+||.||+|++.. ++.||||++..... ...+.+.+|+.+++.++||||+++++++.+++..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 679999999999999999998764 89999999975532 23467889999999999999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||+++++|.+++... ....++..++.|++.||+||| +.+|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~---------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPA---------- 174 (286)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCC----------
T ss_pred EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEecc----------
Confidence 999999999999643 356678999999999999999 9999999999999999999999998543
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCc
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQ 762 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (824)
|++ .++.++|||||||++|||+||+.||......+.... . .......
T Consensus 175 ------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~-~-------------~~~~~~~ 221 (286)
T 3uqc_A 175 ------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP-A-------------ERDTAGQ 221 (286)
T ss_dssp ------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE-C-------------CBCTTSC
T ss_pred ------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH-H-------------HHHhccC
Confidence 333 268899999999999999999999976332210000 0 0000000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHh
Q 040845 763 EDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKLLKIRDS 808 (824)
Q Consensus 763 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L~~~~~~ 808 (824)
..........++..+.+++.+||+.||++| |+.|+++.|+++...
T Consensus 222 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~ 266 (286)
T 3uqc_A 222 PIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAV 266 (286)
T ss_dssp BCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC-
T ss_pred CCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhcc
Confidence 000011123466779999999999999999 999999999998654
No 284
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.2e-35 Score=315.18 Aligned_cols=307 Identities=27% Similarity=0.378 Sum_probs=168.2
Q ss_pred ccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCC
Q 040845 41 IGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKL 120 (824)
Q Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 120 (824)
+..+++|++|++++|.+. .++ ++..+++|++|++++|++++++. ...+++|++|+|++|.++. + ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 455666677777776665 233 35556666666666666555443 2245555555555555543 2 234455555
Q ss_pred ceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCcccccccccccc
Q 040845 121 SKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLK 200 (824)
Q Consensus 121 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~ 200 (824)
++|+|++|.+++..+ +.++++|++|++++|...... ..+..+++|++|++++|.+.+..+
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~------------ 172 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL------SPLSNMTGLNYLTVTESKVKDVTP------------ 172 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC------GGGTTCTTCCEEECCSSCCCCCGG------------
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccc------cchhhCCCCcEEEecCCCcCCchh------------
Confidence 555555555543221 444555555555554322211 123444444444444444332210
Q ss_pred EEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCcc
Q 040845 201 NFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNK 280 (824)
Q Consensus 201 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 280 (824)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 173 ----------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l----------------------- 211 (347)
T 4fmz_A 173 ----------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI----------------------- 211 (347)
T ss_dssp ----------------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-----------------------
T ss_pred ----------------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCC-----------------------
Confidence 2334445555555555443222 44444455555544444
Q ss_pred ccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCcc
Q 040845 281 LSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEI 360 (824)
Q Consensus 281 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 360 (824)
.+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++. ..+
T Consensus 212 -~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 212 -TDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp -CCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred -CCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhh
Confidence 43322 4445555555555555555544 44455555555555555532 3456666777777777777654 346
Q ss_pred CCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCccc
Q 040845 361 GSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 361 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 425 (824)
..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 777788888888888877777777778888888888888875555 677778888888888765
No 285
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-35 Score=339.40 Aligned_cols=312 Identities=21% Similarity=0.210 Sum_probs=219.5
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccE
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEV 98 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 98 (824)
.+.+++.|++++|.++...+..|+++++|++|+|++|.+++..|.+|..+++|++|+|++|.++++++... .++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCCE
Confidence 35677778888887776555567777788888888888776666677777777888887777777665443 35777777
Q ss_pred EEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEEC
Q 040845 99 LYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISL 178 (824)
Q Consensus 99 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~L 178 (824)
|+|++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|+|++|.++.++ +..+++|++|++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~l~~L~~L~l 199 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LSLIPSLFHANV 199 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--------GGGCTTCSEEEC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--------hhhhhhhhhhhc
Confidence 777777777555555677777777777777777777777777777777777777776643 345677777777
Q ss_pred cCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCc
Q 040845 179 SNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 179 s~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
++|.+.++. ..++|+.|++++|.+....+ .+ .++|+.|+|++|.++
T Consensus 200 ~~n~l~~l~-------------------------------~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 200 SYNLLSTLA-------------------------------IPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLT 245 (597)
T ss_dssp CSSCCSEEE-------------------------------CCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCC
T ss_pred ccCcccccc-------------------------------CCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCC
Confidence 777765431 12345555555555553222 11 245666666666665
Q ss_pred ccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccc
Q 040845 259 GSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRN 338 (824)
Q Consensus 259 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 338 (824)
+ +..+..+++|+.|+|++|.+.+..|..|+.+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++ .+|..+..
T Consensus 246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 322 (597)
T 3oja_B 246 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322 (597)
T ss_dssp C--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred C--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccccc
Confidence 3 35566666666677777766666667777777777777777777777766666777777777777777 46667778
Q ss_pred cccchhhhcccccccccCCCccCCCCCCCeEEccCcccccc
Q 040845 339 LKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGS 379 (824)
Q Consensus 339 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 379 (824)
+++|+.|+|++|.+++.. +..+++|+.|+|++|.+.+.
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 888888888888887542 67788999999999999853
No 286
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.3e-35 Score=314.28 Aligned_cols=308 Identities=25% Similarity=0.392 Sum_probs=240.8
Q ss_pred cccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCC
Q 040845 16 EIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPN 95 (824)
Q Consensus 16 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 95 (824)
.+.++++|++|++++|.+.. ++ .++.+++|++|++++|++++. +. +..+++|++|++++|++++++. ...+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDISA---LQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCchH---HcCCCc
Confidence 35789999999999999984 44 499999999999999999854 44 9999999999999999998653 346999
Q ss_pred ccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcE
Q 040845 96 LEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTH 175 (824)
Q Consensus 96 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~ 175 (824)
|++|++++|.+++..+ +..+++|++|++++|...... ..+.++++|++|++++|.++..+ .+..+++|++
T Consensus 112 L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-------~~~~l~~L~~ 181 (347)
T 4fmz_A 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT-------PIANLTDLYS 181 (347)
T ss_dssp CSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG-------GGGGCTTCSE
T ss_pred CCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch-------hhccCCCCCE
Confidence 9999999999985433 889999999999999766444 45999999999999999998764 2778999999
Q ss_pred EECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccc
Q 040845 176 ISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYN 255 (824)
Q Consensus 176 L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 255 (824)
|++++|.+.++.+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 182 L~l~~n~l~~~~~----------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 182 LSLNYNQIEDISP----------------------------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp EECTTSCCCCCGG----------------------------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred EEccCCccccccc----------------------------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 9999999875422 4567899999999999986554 888999999999999
Q ss_pred cCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCcc
Q 040845 256 QLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLE 335 (824)
Q Consensus 256 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~ 335 (824)
.+++..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.++.++ .
T Consensus 232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-------------------------~ 282 (347)
T 4fmz_A 232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-------------------------V 282 (347)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-------------------------G
T ss_pred ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-------------------------h
Confidence 9985433 66777777777777777643 34666666777776666665542 3
Q ss_pred ccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccC
Q 040845 336 IRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 336 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
+..+++|+.|++++|++++..+..++.+++|+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4556666666666666666666667777777777777777775444 677777777777777765
No 287
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=5.5e-35 Score=308.84 Aligned_cols=232 Identities=20% Similarity=0.286 Sum_probs=182.1
Q ss_pred hccCCCC-ceeeeccceEEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHH-hcCCCCcceeEEeeeec----CCee
Q 040845 526 TDKFSEN-NLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMM-KSIRHRNLVKVISSCSN----EEFK 598 (824)
Q Consensus 526 ~~~~~~~-~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~ 598 (824)
.++|.+. +.||+|+||.||+|... +++.||||+++. ...+.+|+.++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 4567776 78999999999999874 589999999863 24567788887 66699999999999876 6788
Q ss_pred EEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCC---CCcEEEeecccc
Q 040845 599 ALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDD---NMVAHLSDFGIA 674 (824)
Q Consensus 599 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~---~~~~kl~Dfg~a 674 (824)
++||||+++|+|.+++.... ..+++.+++.++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999998754 46899999999999999999999 999999999999999998 789999999998
Q ss_pred cccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhh
Q 040845 675 KLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEV 754 (824)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (824)
.... +..++.++||||+||++|||++|+.||........... ....
T Consensus 168 ~~~~------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~----------~~~~ 213 (299)
T 3m2w_A 168 KETT------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG----------MKTR 213 (299)
T ss_dssp EECT------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CC----------SCCS
T ss_pred cccc------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHH----------HHHH
Confidence 7532 23467899999999999999999999975322110000 0000
Q ss_pred ccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHHHHHH
Q 040845 755 VDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEIVAKL 802 (824)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~evl~~L 802 (824)
.. .............++..+.+++.+||+.||++|||+.|++++-
T Consensus 214 ~~---~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp 258 (299)
T 3m2w_A 214 IR---MGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHP 258 (299)
T ss_dssp SC---TTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred Hh---hccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence 00 0000011112234677899999999999999999999999863
No 288
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-35 Score=348.11 Aligned_cols=241 Identities=23% Similarity=0.330 Sum_probs=195.2
Q ss_pred hccCCCCceeeeccceEEEEEEEC--CCcEEEEEEeeccc-cchhhhHHHHHHHHhcCCCCcceeEEeeeecCCe-----
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR--DGMEVAVKVFNLQC-GRAFKSFDVECAMMKSIRHRNLVKVISSCSNEEF----- 597 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 597 (824)
.++|++.+.||+|+||.||+|.+. +|+.||||++.... ....+.+.+|+.++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368999999999999999999875 58999999986443 2345678899999999999999999999977654
Q ss_pred eEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccccc
Q 040845 598 KALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 598 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
.|+||||+++++|.+++.. .+++.+++.++.||++||+||| +.+|+||||||+||+++.+ .+||+|||+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 6999999999999988754 6899999999999999999999 9999999999999999885 8999999999876
Q ss_pred CCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccc
Q 040845 678 TGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDA 757 (824)
Q Consensus 678 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (824)
... ....||++|+|||++.++ ++.++|||||||++|||++|..||........ +
T Consensus 232 ~~~------~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------~--------- 285 (681)
T 2pzi_A 232 NSF------GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------P--------- 285 (681)
T ss_dssp TCC------SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------C---------
T ss_pred ccC------CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcccccccc----------c---------
Confidence 432 334689999999988665 48999999999999999999888765221110 0
Q ss_pred cccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCC-CHHHHHHHHHHHHH
Q 040845 758 NLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRI-NAKEIVAKLLKIRD 807 (824)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rp-t~~evl~~L~~~~~ 807 (824)
.......++..+.+++.+||..||++|| +++++.+.+..+..
T Consensus 286 --------~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 286 --------EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp --------TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred --------ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHH
Confidence 0001112356788999999999999999 56777777777654
No 289
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=9.6e-36 Score=328.67 Aligned_cols=241 Identities=17% Similarity=0.176 Sum_probs=180.9
Q ss_pred hccCCCCceeeeccceEEEEEEEC-CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCCC-Cccee-------------
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIRH-RNLVK------------- 587 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h-~niv~------------- 587 (824)
...|...+.||+|+||+||+|++. +|+.||||++.... ....+.+.+|+.+++.++| ++...
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 345778899999999999999854 69999999987432 2336778999999999987 32211
Q ss_pred --------EEeeeec-----CCeeEEEEeccCCCCHHHHhh------hCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCe
Q 040845 588 --------VISSCSN-----EEFKALVLEYMPHGSLEKYLH------SSNYSLDIFQRLNIMIDVASALEYLHFGYSAPV 648 (824)
Q Consensus 588 --------l~~~~~~-----~~~~~lv~e~~~~g~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~i 648 (824)
+..++.. ....+++|+++ +++|.+++. .....+++..++.++.|+++||+||| +.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCc
Confidence 1111111 22456777776 679999984 22345778899999999999999999 9999
Q ss_pred EecCCCCCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCc----------CCCCCCccchHHHHHHH
Q 040845 649 IHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYG----------REGQVSTNGDVYSFGIM 718 (824)
Q Consensus 649 vH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~~~~~~~DvwslG~~ 718 (824)
+||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 99999999999999999999999998864322 233456 999999998 56668999999999999
Q ss_pred HHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHHHHHHHHccccCCCCCCCHHHH
Q 040845 719 LMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFVFNLALECTVESPEQRINAKEI 798 (824)
Q Consensus 719 l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~Rpt~~ev 798 (824)
+|||++|+.||......+. .+..... ...++..+.+++.+||+.||++|||+.|+
T Consensus 307 l~elltg~~Pf~~~~~~~~-----------------~~~~~~~--------~~~~~~~~~~li~~~l~~dP~~Rpt~~~~ 361 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGG-----------------SEWIFRS--------CKNIPQPVRALLEGFLRYPKEDRLLPLQA 361 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSC-----------------SGGGGSS--------CCCCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred HHHHHHCCCCCCCcchhhh-----------------HHHHHhh--------cccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 9999999999976322110 0000000 01235678999999999999999999888
Q ss_pred HHH
Q 040845 799 VAK 801 (824)
Q Consensus 799 l~~ 801 (824)
+++
T Consensus 362 l~~ 364 (413)
T 3dzo_A 362 MET 364 (413)
T ss_dssp TTS
T ss_pred HhC
Confidence 654
No 290
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.8e-35 Score=310.71 Aligned_cols=255 Identities=32% Similarity=0.539 Sum_probs=237.9
Q ss_pred ccccEEEeecCccee--cCCccCCCCCCCCEEEecC-CccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccE
Q 040845 197 HSLKNFYMYNCNVSG--GIPEEITNLTDLTTIVLGG-NKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYE 273 (824)
Q Consensus 197 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 273 (824)
.+++.|++++|.+.+ .+|..+.++++|++|+|++ |.+.+.+|..|.++++|++|+|++|.+++..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 357778888888877 7888999999999999995 9999889999999999999999999999899999999999999
Q ss_pred EEccCccccccCCccccCCCCCcEEEcCCCCCC-CCCCcccccc-cccccccccccccCcCCccccccccchhhhccccc
Q 040845 274 LELGGNKLSGSIPACFSNMTFLKVLSLGSNELT-SIPLNFWSLK-DILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNN 351 (824)
Q Consensus 274 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 351 (824)
|++++|.+++..|..|..+++|++|++++|+++ .+|..+..++ +|+.|++++|.+++..|..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999999999999999999999999999 8898898887 999999999999999999999998 9999999999
Q ss_pred ccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCC
Q 040845 352 FSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRG 431 (824)
Q Consensus 352 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 431 (824)
+++..|..|..+++|+.|+|++|.+++.+|. +..+++|+.|+|++|++++.+|..+..+++|+.|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999976655 889999999999999999999999999999999999999999999998
Q ss_pred CCccccccccccCCccccCCCC
Q 040845 432 GSFGNFSAESFKGNELLCGSPN 453 (824)
Q Consensus 432 ~~~~~~~~~~~~~n~~~c~~~~ 453 (824)
+.+.++..+.+.+|+++||.|.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTS
T ss_pred ccccccChHHhcCCCCccCCCC
Confidence 8899999999999999999874
No 291
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=3.5e-35 Score=315.86 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=185.5
Q ss_pred hccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccc--------cchhhhHHHHHHHHhcCC---------CCcceeE
Q 040845 526 TDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQC--------GRAFKSFDVECAMMKSIR---------HRNLVKV 588 (824)
Q Consensus 526 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~l 588 (824)
.++|++.+.||+|+||+||+|++ +|+.||||++.... ....+.+.+|+.+++.++ ||||+++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999998 58999999997653 223377889999999886 6666666
Q ss_pred Eee-----------------eec-------------CCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHH
Q 040845 589 ISS-----------------CSN-------------EEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALE 638 (824)
Q Consensus 589 ~~~-----------------~~~-------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 638 (824)
.++ +.+ ....++||||+++|++.+.+.+ ..+++.++..++.||+.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 554 332 6789999999999977666644 35899999999999999999
Q ss_pred HhhcCCCCCeEecCCCCCCeeeCCCC--------------------cEEEeecccccccCCCCCccccccccccccccCc
Q 040845 639 YLHFGYSAPVIHCDLKPSNVLLDDNM--------------------VAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAP 698 (824)
Q Consensus 639 ~LH~~~~~~ivH~Dlk~~Nill~~~~--------------------~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aP 698 (824)
|||+ +.+|+||||||+|||++.++ .+||+|||+|+.... ....||+.|+||
T Consensus 176 ~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~y~aP 246 (336)
T 2vuw_A 176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDVSMDE 246 (336)
T ss_dssp HHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCCTTCS
T ss_pred HHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeecccCh
Confidence 9993 37899999999999999887 999999999987642 134699999999
Q ss_pred cCcCCCCCCccchHHHHHHH-HHHHHhCCCCCcccccCcchhhhhhhhhCCCcchhhccccccCchhhhhhhHHHHHHHH
Q 040845 699 EYGREGQVSTNGDVYSFGIM-LMETFTRKKPTDELFNGEMTLKHWVNDCLPISTMEVVDANLLSQEDIHFVAKEQCVSFV 777 (824)
Q Consensus 699 E~~~~~~~~~~~DvwslG~~-l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 777 (824)
|++.+.. +.++||||+|++ .+++++|..||... .|..... ......... ........+..+++++
T Consensus 247 E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~s~~~ 312 (336)
T 2vuw_A 247 DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYLT----DKMLKQMTF-KTKCNTPAMKQIKRKI 312 (336)
T ss_dssp GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHHH----HHHHHTCCC-SSCCCSHHHHHHHHHH
T ss_pred hhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHHH----Hhhhhhhcc-CcccchhhhhhcCHHH
Confidence 9998666 899999998777 77889999997541 1100000 000000000 0001112344678899
Q ss_pred HHHHHHccccCCCCCCCHHHHH-HH
Q 040845 778 FNLALECTVESPEQRINAKEIV-AK 801 (824)
Q Consensus 778 ~~l~~~cl~~dP~~Rpt~~evl-~~ 801 (824)
.+|+.+||+.| |++|++ +|
T Consensus 313 ~dli~~~L~~d-----sa~e~l~~H 332 (336)
T 2vuw_A 313 QEFHRTMLNFS-----SATDLLCQH 332 (336)
T ss_dssp HHHHHHGGGSS-----SHHHHHHHC
T ss_pred HHHHHHHhccC-----CHHHHHhcC
Confidence 99999999977 999988 54
No 292
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.2e-33 Score=297.70 Aligned_cols=287 Identities=23% Similarity=0.281 Sum_probs=178.4
Q ss_pred CCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEc
Q 040845 70 TLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTL 149 (824)
Q Consensus 70 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 149 (824)
+|+.+++++|.++.+|..+ .++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|+++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666665555433 256777777777777666666777777777777777777666777777777777777
Q ss_pred cCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEec
Q 040845 150 YDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLG 229 (824)
Q Consensus 150 ~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 229 (824)
++|+++.++.. +. ++|++|++++|.+..+.+ ..|.++++|+.|+++
T Consensus 110 ~~n~l~~l~~~------~~--~~L~~L~l~~n~i~~~~~--------------------------~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEIPPN------LP--SSLVELRIHDNRIRKVPK--------------------------GVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSCCSS------CC--TTCCEEECCSSCCCCCCS--------------------------GGGSSCSSCCEEECC
T ss_pred CCCcCCccCcc------cc--ccCCEEECCCCccCccCH--------------------------hHhCCCccCCEEECC
Confidence 77777665432 11 566666666666654433 234445555555555
Q ss_pred CCccCC--ccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCC
Q 040845 230 GNKLNG--SIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTS 307 (824)
Q Consensus 230 ~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 307 (824)
+|.++. ..+..|..+ +|++|++++|++++ +|..+. ++|+.|++++|++++..+..|..+++|++|++++|+++.
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 555532 344455555 56666666666553 333322 456666666666665555566666666666666666666
Q ss_pred CCC-cccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCC------CCCCCeEEccCcccc--c
Q 040845 308 IPL-NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGS------LKNLENLFLEYNRLE--G 378 (824)
Q Consensus 308 lp~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~--~ 378 (824)
++. .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|.. .++|+.|++++|.+. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 554 3555666666666666666 45555666666777777777776665555544 367888888888887 5
Q ss_pred cCCccccccccccEEEccCcc
Q 040845 379 SIPDSFGDLISLKSLNLSYNN 399 (824)
Q Consensus 379 ~~~~~~~~l~~L~~L~L~~N~ 399 (824)
..|..|..+++|+.|++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 677788888888888888875
No 293
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.1e-32 Score=293.41 Aligned_cols=288 Identities=20% Similarity=0.255 Sum_probs=164.6
Q ss_pred CCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEc
Q 040845 70 TLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTL 149 (824)
Q Consensus 70 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 149 (824)
+|+.++++++.++.+|... .++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555555544432 246666666666666555556666777777777777776666666777777777777
Q ss_pred cCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEec
Q 040845 150 YDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLG 229 (824)
Q Consensus 150 ~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 229 (824)
++|+++.++... .++|++|++++|.+.++.+. .+.++++|+.|+++
T Consensus 108 s~n~l~~l~~~~--------~~~L~~L~l~~n~l~~~~~~--------------------------~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKELPEKM--------PKTLQELRVHENEITKVRKS--------------------------VFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCSBCCSSC--------CTTCCEEECCSSCCCBBCHH--------------------------HHTTCTTCCEEECC
T ss_pred CCCcCCccChhh--------cccccEEECCCCcccccCHh--------------------------HhcCCccccEEECC
Confidence 777666554321 15666666666666544332 33444555555555
Q ss_pred CCccCC--ccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCC
Q 040845 230 GNKLNG--SIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTS 307 (824)
Q Consensus 230 ~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 307 (824)
+|.+.. ..+..|..+++|++|++++|.++. +|..+. ++|+.|++++|++++..+..|..+++|++|++++|.++.
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 555432 334445555555555555555542 232221 455555555555555555555555555555555555555
Q ss_pred CCC-cccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCC------CCCCCeEEccCccccc--
Q 040845 308 IPL-NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGS------LKNLENLFLEYNRLEG-- 378 (824)
Q Consensus 308 lp~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~-- 378 (824)
++. .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+|++..+..|.. .+.|+.|++++|.+..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 443 3444555555555555555 44555555566666666666666555555533 3678888888888763
Q ss_pred cCCccccccccccEEEccCcc
Q 040845 379 SIPDSFGDLISLKSLNLSYNN 399 (824)
Q Consensus 379 ~~~~~~~~l~~L~~L~L~~N~ 399 (824)
..|..|..+++|+.++|++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 556788888888888888885
No 294
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.9e-37 Score=347.90 Aligned_cols=383 Identities=19% Similarity=0.151 Sum_probs=235.7
Q ss_pred CCCcEEEccCCccccccccc-ccCCCCCCEEeCCCCcCCc----ccChhhhCcCCCceeeccCCccccccCccccCCCC-
Q 040845 21 SNLKVLYLYNNRLQGEIIHE-IGHLHNLGFLDLSQNKLLG----TIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLP- 94 (824)
Q Consensus 21 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 94 (824)
++|++|+|++|+++...... +..+++|++|+|++|.++. .++..+..+++|++|+|++|++++.........++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999998655444 7889999999999999884 35677888899999999999987633222222344
Q ss_pred ---CccEEEccCCeeee----ecCccccCCCCCceEeccCccccccCCcccc-----CCCCCCEEEccCCcCCCCcCccc
Q 040845 95 ---NLEVLYLWGNNFSG----TIPHFIFNASKLSKLALEMNSFSGFIPSTFG-----NLRNLEWLTLYDNNLTSSTLDLS 162 (824)
Q Consensus 95 ---~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~~~~~ 162 (824)
+|++|+|++|+++. .++..+..+++|++|+|++|.+++..+..+. ..++|++|++++|+++..... .
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-P 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-H
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-H
Confidence 79999999999884 4578888899999999999998865444333 356899999999988764321 1
Q ss_pred ccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCc----cc
Q 040845 163 FLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGS----IP 238 (824)
Q Consensus 163 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~ 238 (824)
+...+..+++|++|++++|.+.+.....+...+. ...++|++|++++|.+++. ++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---------------------~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK---------------------DSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH---------------------HSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh---------------------cCCCCceEEEccCCCCcHHHHHHHH
Confidence 2344667789999999999886543333322111 0123444555555544432 23
Q ss_pred hhhcCCCCCCEEEcccccCcccCC-----ccccccCCccEEEccCcccccc----CCccccCCCCCcEEEcCCCCCCCCC
Q 040845 239 ITLGKLQKLQDVDLEYNQLEGSIP-----DSICLSVELYELELGGNKLSGS----IPACFSNMTFLKVLSLGSNELTSIP 309 (824)
Q Consensus 239 ~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~lp 309 (824)
..+..+++|++|++++|.+++... ..+..+++|++|++++|.++.. ++..+..+++|++|++++|.++..+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 344444555555555555443221 1111344555555555555432 2333444555555555555554221
Q ss_pred C-----ccc-ccccccccccccccccCc----CCccccccccchhhhcccccccccCCCccCC-----CCCCCeEEccCc
Q 040845 310 L-----NFW-SLKDILDLNLSSNCFSGP----LPLEIRNLKALIEIDFSMNNFSGIIPMEIGS-----LKNLENLFLEYN 374 (824)
Q Consensus 310 ~-----~~~-~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-----l~~L~~L~L~~N 374 (824)
. .+. ..++|+.|++++|.+++. ++..+..+++|+.|++++|++++..+..+.. .++|+.|+|++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 1 111 123555555566655533 3444556677777777777776544433332 567888888888
Q ss_pred cccc----cCCccccccccccEEEccCcccCCCCccccc-----CCcccceeeccCCccc
Q 040845 375 RLEG----SIPDSFGDLISLKSLNLSYNNLSGTIPVSLE-----KLSYLKDLNLSFNKLK 425 (824)
Q Consensus 375 ~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~l~~N~l~ 425 (824)
.+++ .+|..+..+++|+.|++++|++++.-...+. ...+|+.|++.++.+.
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 8875 5667777778888888888887643111111 1234666666666554
No 295
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.1e-32 Score=293.53 Aligned_cols=312 Identities=21% Similarity=0.227 Sum_probs=199.9
Q ss_pred ccccccCCcccccCC-----CCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCc
Q 040845 6 NNFLTSTTPKEIDNI-----SNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNS 80 (824)
Q Consensus 6 ~n~i~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (824)
.+.+++++|.....+ .+++.+++++|.++ .+|..+. ++|++|+|++|.+++..|.+|.++++|++|+|++|+
T Consensus 13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 89 (332)
T 2ft3_A 13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89 (332)
T ss_dssp ------------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc
Confidence 445555555433332 37999999999998 6676664 689999999999997777889999999999999999
Q ss_pred cccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCc
Q 040845 81 LSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLD 160 (824)
Q Consensus 81 l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 160 (824)
++++++... .++++|++|+|++|+++ .+|..+. ++|++|++++|+++...+..|.++++|++|++++|.++..+..
T Consensus 90 l~~~~~~~~-~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 90 ISKIHEKAF-SPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp CCEECGGGS-TTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred cCccCHhHh-hCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 987754332 36899999999999998 4555544 7899999999999977777889999999999999988753322
Q ss_pred ccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchh
Q 040845 161 LSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPIT 240 (824)
Q Consensus 161 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 240 (824)
+..+..+ +|++|++++|.+.+++... +.+|++|++++|.+++..+..+..+++|+.|+|++|++++..+..
T Consensus 166 ---~~~~~~l-~L~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 236 (332)
T 2ft3_A 166 ---PGAFDGL-KLNYLRISEAKLTGIPKDL-----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236 (332)
T ss_dssp ---TTSSCSC-CCSCCBCCSSBCSSCCSSS-----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred ---cccccCC-ccCEEECcCCCCCccCccc-----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence 2346666 8899999999888754322 245666666666665555555556666666666666665555555
Q ss_pred hcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccc
Q 040845 241 LGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILD 320 (824)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (824)
|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..+..|..... ......|+.
T Consensus 237 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-----------------~~~~~~l~~ 298 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-----------------GVKRAYYNG 298 (332)
T ss_dssp GGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-----------------CSSSCCBSE
T ss_pred hhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc-----------------ccccccccc
Confidence 555555555655555555 44444555555555555555555444444433200 000234555
Q ss_pred ccccccccc--CcCCccccccccchhhhccccc
Q 040845 321 LNLSSNCFS--GPLPLEIRNLKALIEIDFSMNN 351 (824)
Q Consensus 321 L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~ 351 (824)
|++++|++. +..|..|..+++|+.|++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 555555554 3455666667777777776664
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7e-32 Score=289.35 Aligned_cols=293 Identities=20% Similarity=0.264 Sum_probs=194.8
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccE
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEV 98 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 98 (824)
...+++.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|+++++.+... ..+++|++
T Consensus 29 c~c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 104 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLER 104 (330)
T ss_dssp CEEETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCE
T ss_pred CcCCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCE
Confidence 3447899999999998 5676654 689999999999997777789999999999999999987744332 36889999
Q ss_pred EEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEEC
Q 040845 99 LYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISL 178 (824)
Q Consensus 99 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~L 178 (824)
|+|++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++..+.. ...+..+++|++|++
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE---NGAFQGMKKLSYIRI 178 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC---TTGGGGCTTCCEEEC
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC---hhhccCCCCcCEEEC
Confidence 999999998 4555543 7899999999999988888899999999999999988753322 245778899999999
Q ss_pred cCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCc
Q 040845 179 SNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 179 s~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
++|.+..++... +++|++|++++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|+++
T Consensus 179 ~~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 179 ADTNITTIPQGL-----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCccccCCccc-----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 999887653322 234555555555555444455555555555555555555444444445555555555555544
Q ss_pred ccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccc-------ccccccccccccccccC-
Q 040845 259 GSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFW-------SLKDILDLNLSSNCFSG- 330 (824)
Q Consensus 259 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~-------~l~~L~~L~l~~N~l~~- 330 (824)
.+| ..+..+++|++|++++|+|+.+|...+ ..+.++.|++++|.+..
T Consensus 254 -~lp------------------------~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 254 -KVP------------------------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp -SCC------------------------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred -cCC------------------------hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 334 444455555555555555555443311 12455556666666542
Q ss_pred -cCCccccccccchhhhccccc
Q 040845 331 -PLPLEIRNLKALIEIDFSMNN 351 (824)
Q Consensus 331 -~~~~~~~~l~~L~~L~l~~N~ 351 (824)
..|..|..+.+++.++|++|+
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC----
T ss_pred ccCccccccccceeEEEecccC
Confidence 455667777777777777764
No 297
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.8e-32 Score=290.82 Aligned_cols=250 Identities=30% Similarity=0.484 Sum_probs=204.1
Q ss_pred CCcEEECcCCCCCc--cCCccccccccccccEEEeec-CcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCC
Q 040845 172 SLTHISLSNNPLDG--ILPRTYVGNLSHSLKNFYMYN-CNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQ 248 (824)
Q Consensus 172 ~L~~L~Ls~n~l~~--~~~~~~~~~l~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 248 (824)
++++|+|++|.+.+ ..|..+.. .++|++|++++ |.+.+.+|..|.++++|++|+|++|.+++..|..|.++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG--CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhC--CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 45555555555554 33333322 23566666663 666666777778888888888888888877888888888888
Q ss_pred EEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCC-CCcEEEcCCCCCC-CCCCcccccccccccccccc
Q 040845 249 DVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMT-FLKVLSLGSNELT-SIPLNFWSLKDILDLNLSSN 326 (824)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~l~~N 326 (824)
+|+|++|.+++..|..+..+++|++|++++|++++..|..+..++ +|++|++++|+++ .+|..+..++ |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888877888888888888888888888878888888887 8888888888888 5677777776 889999999
Q ss_pred cccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcc
Q 040845 327 CFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPV 406 (824)
Q Consensus 327 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 406 (824)
.+++..|..|..+++|+.|++++|++++.+|. +..+++|++|+|++|++++.+|..|..+++|+.|+|++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99888899999999999999999999876665 88899999999999999999999999999999999999999999998
Q ss_pred cccCCcccceeeccCCc-ccC
Q 040845 407 SLEKLSYLKDLNLSFNK-LKG 426 (824)
Q Consensus 407 ~~~~l~~L~~L~l~~N~-l~~ 426 (824)
. ..+++|+.+++++|+ ++|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 7 889999999999999 544
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=9.8e-36 Score=335.34 Aligned_cols=358 Identities=20% Similarity=0.209 Sum_probs=262.3
Q ss_pred CCCCEEeCCCCcCCcccChh-hhCcCCCceeeccCCccccc-----cCccccCCCCCccEEEccCCeeeeecCccc-cCC
Q 040845 45 HNLGFLDLSQNKLLGTIPAA-IFNVSTLKAFAVTNNSLSGC-----LSSITDVGLPNLEVLYLWGNNFSGTIPHFI-FNA 117 (824)
Q Consensus 45 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l-~~l 117 (824)
++|++|||++|+++...... +..+++|++|+|++|+++.. +..+ ..+++|++|+|++|.+++..+..+ ..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH--HhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 46788888888887543333 67788888888888887632 2221 236777888888877765433332 224
Q ss_pred C----CCceEeccCccccc----cCCccccCCCCCCEEEccCCcCCCCcCccccccc-CCCCCCCcEEECcCCCCCccCC
Q 040845 118 S----KLSKLALEMNSFSG----FIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSS-LSNCKSLTHISLSNNPLDGILP 188 (824)
Q Consensus 118 ~----~L~~L~L~~N~i~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 188 (824)
+ +|++|+|++|+++. .++..|.++++|++|++++|.++...... +... ....++|++|++++|.+.+...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 57777777777774 33666777777777777777765432211 1111 2234567777777776654322
Q ss_pred ccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhc-----CCCCCCEEEcccccCccc---
Q 040845 189 RTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLG-----KLQKLQDVDLEYNQLEGS--- 260 (824)
Q Consensus 189 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~--- 260 (824)
. .++..+..+++|++|++++|.+.+..+..+. ..++|++|+|++|.+++.
T Consensus 160 ~----------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 160 E----------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp H----------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred H----------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 1 2234566688999999999999865555554 367999999999999864
Q ss_pred -CCccccccCCccEEEccCccccccC-----CccccCCCCCcEEEcCCCCCCC-----CCCccccccccccccccccccc
Q 040845 261 -IPDSICLSVELYELELGGNKLSGSI-----PACFSNMTFLKVLSLGSNELTS-----IPLNFWSLKDILDLNLSSNCFS 329 (824)
Q Consensus 261 -~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~ 329 (824)
++..+..+++|++|++++|++++.. +..+..+++|++|++++|.++. ++..+..+++|++|++++|.++
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 4677788899999999999988543 3334468999999999999997 6767777999999999999997
Q ss_pred CcCCcccccc-----ccchhhhccccccccc----CCCccCCCCCCCeEEccCccccccCCccccc-----cccccEEEc
Q 040845 330 GPLPLEIRNL-----KALIEIDFSMNNFSGI----IPMEIGSLKNLENLFLEYNRLEGSIPDSFGD-----LISLKSLNL 395 (824)
Q Consensus 330 ~~~~~~~~~l-----~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L 395 (824)
+..+..+... ++|+.|++++|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|+|
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence 6544444433 6999999999999865 4556778899999999999998765555543 679999999
Q ss_pred cCcccCC----CCcccccCCcccceeeccCCcccCC
Q 040845 396 SYNNLSG----TIPVSLEKLSYLKDLNLSFNKLKGE 427 (824)
Q Consensus 396 ~~N~l~~----~~p~~~~~l~~L~~L~l~~N~l~~~ 427 (824)
++|.+++ .+|..+..+++|+.|++++|++++.
T Consensus 378 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9999986 7888999999999999999999853
No 299
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.4e-30 Score=269.70 Aligned_cols=254 Identities=19% Similarity=0.189 Sum_probs=206.4
Q ss_pred cccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCc--cchhhcCCCCCCEEEcccccCcccCCccccccCCccEEE
Q 040845 198 SLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGS--IPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELE 275 (824)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 275 (824)
++++|++++|+++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 455555555555534444578889999999999998743 3677788999999999999998 4667788899999999
Q ss_pred ccCccccccCC-ccccCCCCCcEEEcCCCCCCCCC-CcccccccccccccccccccC-cCCccccccccchhhhcccccc
Q 040845 276 LGGNKLSGSIP-ACFSNMTFLKVLSLGSNELTSIP-LNFWSLKDILDLNLSSNCFSG-PLPLEIRNLKALIEIDFSMNNF 352 (824)
Q Consensus 276 l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l 352 (824)
+++|++++..+ ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.+ ..|..+..+++|+.|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 99999987665 67889999999999999998664 447788999999999999986 5788899999999999999999
Q ss_pred cccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCc-ccceeeccCCcccCCCCCC
Q 040845 353 SGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLS-YLKDLNLSFNKLKGEIPRG 431 (824)
Q Consensus 353 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~l~~N~l~~~~p~~ 431 (824)
++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|++++|+++|.++..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 988889999999999999999999977777899999999999999999988999999885 8999999999999876532
Q ss_pred C---CccccccccccCCccccCCC
Q 040845 432 G---SFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 432 ~---~~~~~~~~~~~~n~~~c~~~ 452 (824)
. .+..........+...|..|
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEEES
T ss_pred HHHHHHHhhhhhhccccccccCCc
Confidence 1 12223334445666777665
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-29 Score=269.42 Aligned_cols=277 Identities=21% Similarity=0.257 Sum_probs=158.5
Q ss_pred cEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEE
Q 040845 97 EVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHI 176 (824)
Q Consensus 97 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L 176 (824)
+.++++++.++ .+|..+ .++|++|+|++|+++.+.+..|.++++|++|+|++|.++..... ...+..+++|++|
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHHHHSCSCCCEE
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccccccccccCEE
Confidence 35566666665 333332 24556666666655544444455555555555555555432110 0112233444444
Q ss_pred ECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccc-hhhcCCCCCCEEEcccc
Q 040845 177 SLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIP-ITLGKLQKLQDVDLEYN 255 (824)
Q Consensus 177 ~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n 255 (824)
++++|.+.. +|..+..+++|++|++++|++++..+ ..|..+++|++|++++|
T Consensus 84 ~Ls~n~i~~---------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 136 (306)
T 2z66_A 84 DLSFNGVIT---------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136 (306)
T ss_dssp ECCSCSEEE---------------------------EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcccc---------------------------ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence 444443321 12223344555555555555543332 34444455555555555
Q ss_pred cCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCC--CCCcccccccccccccccccccCcCC
Q 040845 256 QLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTS--IPLNFWSLKDILDLNLSSNCFSGPLP 333 (824)
Q Consensus 256 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~~ 333 (824)
.+ .+..+..|.++++|++|++++|.++. +|..+..+++|+.|++++|.+++..|
T Consensus 137 ~l------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 192 (306)
T 2z66_A 137 HT------------------------RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192 (306)
T ss_dssp CC------------------------EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cC------------------------CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH
Confidence 44 44444445555555555555555543 44445555555555556666665556
Q ss_pred ccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccc-cccEEEccCcccCCCCc--ccccC
Q 040845 334 LEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLI-SLKSLNLSYNNLSGTIP--VSLEK 410 (824)
Q Consensus 334 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p--~~~~~ 410 (824)
..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++.-+ .....
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 6777777788888888888776666788888888888888888887888888874 88888888888875422 12233
Q ss_pred CcccceeeccCCcccCCCCC
Q 040845 411 LSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 411 l~~L~~L~l~~N~l~~~~p~ 430 (824)
+...+.+.+..+.+.|..|.
T Consensus 273 l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 273 IKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHTGGGBSCGGGCBEEESG
T ss_pred HHhhhhhhccccccccCCch
Confidence 44555666677788877665
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=272.63 Aligned_cols=294 Identities=17% Similarity=0.199 Sum_probs=204.9
Q ss_pred CCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceE
Q 040845 44 LHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKL 123 (824)
Q Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L 123 (824)
++.....|+++|.++ .+|..+. ++|++|++++|++++++.... .++++|++|+|++|++++..+..|..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445566666665 4454443 356666666666665544222 246677777777777776666667777777777
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCC-CCCccCCccccccccccccEE
Q 040845 124 ALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNN-PLDGILPRTYVGNLSHSLKNF 202 (824)
Q Consensus 124 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~L~~L 202 (824)
+|++|++++..+..|+++++|++|++++|+++.++.. ..+..+++|++|++++| .+..+.+..|.. .++|++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--l~~L~~L 179 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET----SLFSHLTKLQILRVGNMDTFTKIQRKDFAG--LTFLEEL 179 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS----CSCTTCTTCCEEEEEESSSCCEECTTTTTT--CCEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch----hhhccCCCCcEEECCCCccccccCHHHccC--CCCCCEE
Confidence 7777777755555577777777777777777765431 23667777777777777 365555554433 3567888
Q ss_pred EeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCcccc---ccCCccEEEccCc
Q 040845 203 YMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSIC---LSVELYELELGGN 279 (824)
Q Consensus 203 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~l~~n 279 (824)
++++|++++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+. ....++.++++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 8888888878888899999999999999999755545566789999999999999876555443 3566888888888
Q ss_pred cccc----cCCccccCCCCCcEEEcCCCCCCCCCCcc-cccccccccccccccccCcCCccccccccchhhhcccccccc
Q 040845 280 KLSG----SIPACFSNMTFLKVLSLGSNELTSIPLNF-WSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSG 354 (824)
Q Consensus 280 ~l~~----~~~~~~~~l~~L~~L~L~~N~l~~lp~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 354 (824)
.+.+ .+|..+..+++|+.|++++|+++.+|..+ ..+++|++|++++|++.+ .++.++.|....+...+
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~-------~~~~l~~l~~~~~~~~~ 332 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-------SCPRIDYLSRWLNKNSQ 332 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC-------CHHHHHHHHHHHHHTTT
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC-------cCCCcHHHHHHHHhccc
Confidence 8774 35667888999999999999999998874 678999999999998874 33455555555554443
No 302
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.4e-29 Score=278.25 Aligned_cols=232 Identities=25% Similarity=0.276 Sum_probs=174.2
Q ss_pred cccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEE
Q 040845 196 SHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELE 275 (824)
Q Consensus 196 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 275 (824)
+.+++.|+|++|++++..+..|.++++|+.|+|++|.++++.+..|.++++|++|+|++|+++...+..|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 34555555555555556666677777777777777777766667777777777777777777766666677777777777
Q ss_pred ccCccccccCCccccCCCCCcEEEcCC-CCCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhccccccc
Q 040845 276 LGGNKLSGSIPACFSNMTFLKVLSLGS-NELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFS 353 (824)
Q Consensus 276 l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 353 (824)
|++|+++...+..|.++++|+.|++++ |.+..++.. |..+++|+.|++++|.+++. | .+..+++|+.|+|++|+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 777777766667777777777777777 566666654 66677777777777777743 3 4677788888888888888
Q ss_pred ccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCC
Q 040845 354 GIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 354 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 429 (824)
+..|..|..+++|+.|+|++|++++..+..|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 7778888888888888888888887777788888888888888888886666677788888888888888877654
No 303
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=276.42 Aligned_cols=231 Identities=23% Similarity=0.258 Sum_probs=183.2
Q ss_pred ccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEc
Q 040845 197 HSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELEL 276 (824)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 276 (824)
.+++.|+|++|++++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|+|+...+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45555555555555566667777888888888888888777778888888888888888888666667888888888888
Q ss_pred cCccccccCCccccCCCCCcEEEcCC-CCCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhcccccccc
Q 040845 277 GGNKLSGSIPACFSNMTFLKVLSLGS-NELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSG 354 (824)
Q Consensus 277 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 354 (824)
++|+++...+..|.++++|++|++++ |.+..++.. |..+++|+.|++++|.++. +| .+..+++|+.|+|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 88888877777888888888888887 566666653 6678888888888888873 34 47788888888888888888
Q ss_pred cCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCC
Q 040845 355 IIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 355 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 429 (824)
..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 888888888888888888888888778888888888888888888887777777888888888888888887654
No 304
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=273.49 Aligned_cols=279 Identities=19% Similarity=0.235 Sum_probs=203.4
Q ss_pred CCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCcccccccc
Q 040845 117 ASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLS 196 (824)
Q Consensus 117 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 196 (824)
++.....++++|.++ .+|..+. ++|++|++++|.++.++. ..+.++++|++|++++|.+.++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~---------- 91 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTI---------- 91 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEE----------
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCcc----------
Confidence 344555777777777 3454443 477777777777776543 2366777777777777766544
Q ss_pred ccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCC-ccccccCCccEEE
Q 040845 197 HSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIP-DSICLSVELYELE 275 (824)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ 275 (824)
.+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+++...+ ..+..+++|++|+
T Consensus 92 ----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 92 ----------------EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp ----------------CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred ----------------CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 34556677788888888888876666667778888888888888874443 4677778888888
Q ss_pred ccCc-cccccCCccccCCCCCcEEEcCCCCCCCC-CCcccccccccccccccccccCcCCccccccccchhhhccccccc
Q 040845 276 LGGN-KLSGSIPACFSNMTFLKVLSLGSNELTSI-PLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFS 353 (824)
Q Consensus 276 l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 353 (824)
+++| .+....+..|.++++|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|+.|++++|+++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 8887 46666677778888888888888888766 556777788888888888876444444556788888888888888
Q ss_pred ccCCCccC---CCCCCCeEEccCccccc----cCCccccccccccEEEccCcccCCCCccc-ccCCcccceeeccCCccc
Q 040845 354 GIIPMEIG---SLKNLENLFLEYNRLEG----SIPDSFGDLISLKSLNLSYNNLSGTIPVS-LEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 354 ~~~~~~~~---~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 425 (824)
+..+..+. ....++.++|++|.+++ .+|..+..+++|+.|+|++|+++ .+|.. +..+++|+.|++++|+++
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 66554433 35677888888887775 36778889999999999999998 66665 589999999999999999
Q ss_pred CCCCC
Q 040845 426 GEIPR 430 (824)
Q Consensus 426 ~~~p~ 430 (824)
|.+|.
T Consensus 315 ~~~~~ 319 (353)
T 2z80_A 315 CSCPR 319 (353)
T ss_dssp CCHHH
T ss_pred CcCCC
Confidence 98874
No 305
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.6e-32 Score=314.22 Aligned_cols=410 Identities=14% Similarity=0.084 Sum_probs=275.8
Q ss_pred ccCCcccccCCCCCcEEEccCCccc---cccccccc------------CCCCCCEEeCCCCcCCcccChhhhCc--CCCc
Q 040845 10 TSTTPKEIDNISNLKVLYLYNNRLQ---GEIIHEIG------------HLHNLGFLDLSQNKLLGTIPAAIFNV--STLK 72 (824)
Q Consensus 10 ~~~~p~~~~~l~~L~~L~L~~n~l~---~~~~~~~~------------~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~ 72 (824)
...++..+..+++|++|+|+++... +.+|..++ .+++|++|+|++|.+++..+..+... .+|+
T Consensus 62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE 141 (592)
T ss_dssp GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence 3445556678889999999886431 22333333 78899999999998887666666663 4499
Q ss_pred eeeccCCc-cccccCccccCCCCCccEEEccCCeeeee----cCccccCCCCCceEeccCccccc----cCCccccCCCC
Q 040845 73 AFAVTNNS-LSGCLSSITDVGLPNLEVLYLWGNNFSGT----IPHFIFNASKLSKLALEMNSFSG----FIPSTFGNLRN 143 (824)
Q Consensus 73 ~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~N~i~~----~~~~~~~~l~~ 143 (824)
+|+|++|. ++..........+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++ ..+..+.++++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 99999886 22111000112478999999999988765 34456678899999999998873 33444567899
Q ss_pred CCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCcc-CCccccccccccccEEEeecCcceecCCccCCCCCC
Q 040845 144 LEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGI-LPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTD 222 (824)
Q Consensus 144 L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~ 222 (824)
|++|++++|.+..++ ..+..+++|++|+++.+..... .+....-..+.+|+.|.+.++.. ..+|..+..+++
T Consensus 222 L~~L~L~~~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~ 294 (592)
T 3ogk_B 222 LVSVKVGDFEILELV------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQ 294 (592)
T ss_dssp CCEEECSSCBGGGGH------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGG
T ss_pred CcEEeccCccHHHHH------HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCC
Confidence 999999998887644 3466778888888875332211 00000111245788888877533 355666777888
Q ss_pred CCEEEecCCccCCccc-hhhcCCCCCCEEEcccccCcc-cCCccccccCCccEEEccC-----------ccccccC-Ccc
Q 040845 223 LTTIVLGGNKLNGSIP-ITLGKLQKLQDVDLEYNQLEG-SIPDSICLSVELYELELGG-----------NKLSGSI-PAC 288 (824)
Q Consensus 223 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~l~~-----------n~l~~~~-~~~ 288 (824)
|++|+|++|.+++... ..+..+++|++|+++ +.+.+ ..+..+..+++|++|++++ |.+++.. ...
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 8888888888764433 346788888888888 44443 2333445678888888883 5555332 222
Q ss_pred ccCCCCCcEEEcCCCCCCCC-CCcccc-cccccccccc----cccccCc-----CCccccccccchhhhccccc--cccc
Q 040845 289 FSNMTFLKVLSLGSNELTSI-PLNFWS-LKDILDLNLS----SNCFSGP-----LPLEIRNLKALIEIDFSMNN--FSGI 355 (824)
Q Consensus 289 ~~~l~~L~~L~L~~N~l~~l-p~~~~~-l~~L~~L~l~----~N~l~~~-----~~~~~~~l~~L~~L~l~~N~--l~~~ 355 (824)
+..+++|++|+++.|.++.. +..+.. +++|+.|+++ .|.+++. ++..+.++++|+.|++++|. +++.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 44578888888888887743 222333 6788888885 6677653 23336678888889887543 5554
Q ss_pred CCCccC-CCCCCCeEEccCccccc-cCCccccccccccEEEccCcccCCC-CcccccCCcccceeeccCCcccCC
Q 040845 356 IPMEIG-SLKNLENLFLEYNRLEG-SIPDSFGDLISLKSLNLSYNNLSGT-IPVSLEKLSYLKDLNLSFNKLKGE 427 (824)
Q Consensus 356 ~~~~~~-~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~l~~N~l~~~ 427 (824)
.+..+. .+++|++|+|++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|+.|++++|+++..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 444443 47889999999998875 3445567788899999999988644 445556788899999999987754
No 306
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=7.4e-28 Score=269.61 Aligned_cols=245 Identities=22% Similarity=0.242 Sum_probs=143.5
Q ss_pred CEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccC
Q 040845 48 GFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEM 127 (824)
Q Consensus 48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 127 (824)
..++.+++.++ .+|..+. ++|++|+|++|++++++.... .++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 44555555554 3443332 355555555555554433222 2455566666666666555555666666666666666
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCC-CCccCCccccccccccccEEEeec
Q 040845 128 NSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNP-LDGILPRTYVGNLSHSLKNFYMYN 206 (824)
Q Consensus 128 N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~L~~L~l~~ 206 (824)
|+++...+..|.++++|++|+|++|+++.++. ..|.++++|++|++++|. +..+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~~~~l~~i-------------------- 187 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-----YAFNRVPSLMRLDLGELKKLEYI-------------------- 187 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-----TTTTTCTTCCEEECCCCTTCCEE--------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCH-----hHHhcCCcccEEeCCCCCCcccc--------------------
Confidence 66665555556666666666666666655442 235566666666666532 2211
Q ss_pred CcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCC
Q 040845 207 CNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIP 286 (824)
Q Consensus 207 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 286 (824)
.+..|.++++|+.|+|++|++++. | .+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..+
T Consensus 188 ------~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 188 ------SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred ------ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 122345556666666666666532 2 35566666666666666666666666666666666666666666666
Q ss_pred ccccCCCCCcEEEcCCCCCCCCCCc-cccccccccccccccccc
Q 040845 287 ACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDLNLSSNCFS 329 (824)
Q Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~ 329 (824)
..|.++++|+.|+|++|+|+.+|.. +..+++|+.|+|++|.+.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6677777777777777777766654 445677777777777765
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.2e-28 Score=258.32 Aligned_cols=233 Identities=21% Similarity=0.240 Sum_probs=161.7
Q ss_pred ccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEccccc-CcccCCccccccCCccEEE
Q 040845 197 HSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQ-LEGSIPDSICLSVELYELE 275 (824)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 275 (824)
.++++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|. ++...+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555555555667778888888888888887777788888888888888886 7766677777778888888
Q ss_pred ccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhcccccccc
Q 040845 276 LGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSG 354 (824)
Q Consensus 276 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 354 (824)
+++|++++..+..|.++++|++|++++|+++.++.. +..+++|+.|++++|.+++..+..|.++++|+.|++++|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 888888777777777888888888888887777654 5566777777777777765555556667777777777777776
Q ss_pred cCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 355 IIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 355 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++....+. ..-...++.+..+.|.+.|..|.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCch
Confidence 6666777777777777777777755555566777777777777776633221 12223455556666666666654
No 308
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=268.65 Aligned_cols=246 Identities=22% Similarity=0.232 Sum_probs=154.6
Q ss_pred CCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEecc
Q 040845 47 LGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALE 126 (824)
Q Consensus 47 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~ 126 (824)
...++.+++.++ .+|..+. ++++.|+|++|+++.++.... .++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445555555555 4444442 455555555555555443322 245666666666666665555666666666666666
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCC-CCccCCccccccccccccEEEee
Q 040845 127 MNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNP-LDGILPRTYVGNLSHSLKNFYMY 205 (824)
Q Consensus 127 ~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~L~~L~l~ 205 (824)
+|+++.+.+..|.++++|++|+|++|.|+.++. ..|..+++|++|+|++|. +..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~l~~~~~l~~-------------------- 175 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-----YAFNRIPSLRRLDLGELKRLSY-------------------- 175 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-----TTTTTCTTCCEEECCCCTTCCE--------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCH-----HHhhhCcccCEeCCCCCCCcce--------------------
Confidence 666665555566666666666666666665543 235666666766666633 221
Q ss_pred cCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccC
Q 040845 206 NCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSI 285 (824)
Q Consensus 206 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 285 (824)
..+..|.++++|+.|+|++|+++. +| .+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..
T Consensus 176 ------i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 176 ------ISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp ------ECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred ------eCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 122345556666666666666663 33 3566667777777777777666667777777777777777777777
Q ss_pred CccccCCCCCcEEEcCCCCCCCCCCc-cccccccccccccccccc
Q 040845 286 PACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDLNLSSNCFS 329 (824)
Q Consensus 286 ~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~ 329 (824)
+..|.++++|+.|+|++|+|+.+|.. +..+++|+.|+|++|.+.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777777777777777777777655 455777777777877776
No 309
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.6e-28 Score=254.64 Aligned_cols=254 Identities=21% Similarity=0.199 Sum_probs=134.3
Q ss_pred ceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccC
Q 040845 72 KAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYD 151 (824)
Q Consensus 72 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 151 (824)
++++++++.++.+|... .++|++|+|++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34444444444444322 24566666666666655555566666666666666666655566666666666666666
Q ss_pred Cc-CCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecC
Q 040845 152 NN-LTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGG 230 (824)
Q Consensus 152 n~-i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 230 (824)
|. ++.++. ..+..+++|++|++++|.+.++.+ ..+.++++|++|++++
T Consensus 90 n~~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~--------------------------~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 90 NAQLRSVDP-----ATFHGLGRLHTLHLDRCGLQELGP--------------------------GLFRGLAALQYLYLQD 138 (285)
T ss_dssp CTTCCCCCT-----TTTTTCTTCCEEECTTSCCCCCCT--------------------------TTTTTCTTCCEEECCS
T ss_pred CCCccccCH-----HHhcCCcCCCEEECCCCcCCEECH--------------------------hHhhCCcCCCEEECCC
Confidence 65 554432 235556666666666665554322 2334445555555555
Q ss_pred CccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC
Q 040845 231 NKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL 310 (824)
Q Consensus 231 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 310 (824)
|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|.++.+|.
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 55554444445555555555555555554444445555555555555555555555555555555555555555555553
Q ss_pred c-ccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccC
Q 040845 311 N-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIG 361 (824)
Q Consensus 311 ~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 361 (824)
. +..+++|+.|++++|++....+. ..-...++.+..+.+.+....|..+.
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred HHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence 3 44555555555555555532211 11223455555566666555555543
No 310
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.4e-28 Score=262.36 Aligned_cols=223 Identities=19% Similarity=0.229 Sum_probs=174.4
Q ss_pred ccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccC
Q 040845 199 LKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGG 278 (824)
Q Consensus 199 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 278 (824)
++.|++++|.++ .+|..+.++++|++|+|++|.++ .+|..|..+++|++|+|++|+++ .+|..+..+++|++|++++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 344444444443 34444555666666666666666 55666666666666666666666 5566666666666666666
Q ss_pred ccccccCCcccc---------CCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhccc
Q 040845 279 NKLSGSIPACFS---------NMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSM 349 (824)
Q Consensus 279 n~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 349 (824)
|.+.+..|..+. ++++|++|+|++|+++.+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 665555555544 4889999999999999999888889999999999999984 666789999999999999
Q ss_pred ccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCccc
Q 040845 350 NNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 350 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 425 (824)
|++.+.+|..|+.+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999899999999999999999999988899999999999999999999999999999999999999999877665
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=8.1e-28 Score=275.80 Aligned_cols=268 Identities=24% Similarity=0.303 Sum_probs=162.3
Q ss_pred CCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEc
Q 040845 22 NLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYL 101 (824)
Q Consensus 22 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 101 (824)
+++.|++++|.++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|+|++|++++++. .+++|++|+|
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEEC
Confidence 4667777777776 5555554 56777777777766 3444 45666666666666665544 3566666666
Q ss_pred cCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCC
Q 040845 102 WGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNN 181 (824)
Q Consensus 102 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n 181 (824)
++|++++ +|. .+++|+.|+|++|+++. +|.. +++|++|+|++|.++.++. .+++|+.|++++|
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---------~~~~L~~L~L~~N 171 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---------LPSELCKLWAYNN 171 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSS
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---------ccCCCCEEECCCC
Confidence 6666663 233 34566666666666663 2322 3566666666666655431 1245555555555
Q ss_pred CCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccC
Q 040845 182 PLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSI 261 (824)
Q Consensus 182 ~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 261 (824)
.+.+++ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+
T Consensus 172 ~l~~l~------------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 172 QLTSLP------------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp CCSCCC------------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SC
T ss_pred CCCCCc------------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-cc
Confidence 555432 234556666666666653 222 2356666666666666 23
Q ss_pred CccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCcccccccc
Q 040845 262 PDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKA 341 (824)
Q Consensus 262 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 341 (824)
|.. +++|+.|++++|+|++ +| ..+++|+.|+|++|.|+.+|. .+++|+.|+|++|+++ .+|..+.++++
T Consensus 217 ~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 217 PAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp CCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred CCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 322 3566777777776664 33 345667777777777777776 4567777777777777 55667777777
Q ss_pred chhhhcccccccccCCCccCCCC
Q 040845 342 LIEIDFSMNNFSGIIPMEIGSLK 364 (824)
Q Consensus 342 L~~L~l~~N~l~~~~~~~~~~l~ 364 (824)
|+.|+|++|++++..|..+..++
T Consensus 286 L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 286 ETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCEEEecCCCCCCcCHHHHHhcc
Confidence 77777777777776666555444
No 312
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=7.1e-28 Score=276.26 Aligned_cols=269 Identities=25% Similarity=0.360 Sum_probs=211.7
Q ss_pred CCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEe
Q 040845 45 HNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLA 124 (824)
Q Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 124 (824)
.++++|++++|.++ .+|..+. ++|++|+|++|+++.++. .+++|++|+|++|+|++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 36888888888888 6676664 788888888888887665 36788888888888873 444 567788888
Q ss_pred ccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEe
Q 040845 125 LEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYM 204 (824)
Q Consensus 125 L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l 204 (824)
|++|+++++ |. .+++|+.|++++|+|+.++. .+++|++|+|++|.+.++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~l------------------ 156 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLASL------------------ 156 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSCC------------------
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---------CCCCCCEEECcCCcCCCc------------------
Confidence 888887754 33 56777888888887776542 136777777777776543
Q ss_pred ecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCcccccc
Q 040845 205 YNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGS 284 (824)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 284 (824)
|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.|++ +|.. +++|+.|++++|.++.
T Consensus 157 ---------~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~- 215 (622)
T 3g06_A 157 ---------PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS- 215 (622)
T ss_dssp ---------CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-
T ss_pred ---------CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-
Confidence 11 23678999999999985 45 457999999999999995 4443 4789999999999995
Q ss_pred CCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCC
Q 040845 285 IPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLK 364 (824)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 364 (824)
+|. .+++|+.|+|++|.|+.+| ..+++|+.|++++|.++. +|. .+++|+.|+|++|+|+ .+|..|..++
T Consensus 216 l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 216 LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 443 3488999999999999999 446899999999999994 554 6789999999999999 6688899999
Q ss_pred CCCeEEccCccccccCCccccccc
Q 040845 365 NLENLFLEYNRLEGSIPDSFGDLI 388 (824)
Q Consensus 365 ~L~~L~L~~N~l~~~~~~~~~~l~ 388 (824)
+|+.|+|++|.+++..|..+..++
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999999988888777665
No 313
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.8e-29 Score=268.50 Aligned_cols=266 Identities=19% Similarity=0.185 Sum_probs=161.7
Q ss_pred CEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccC
Q 040845 48 GFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEM 127 (824)
Q Consensus 48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~ 127 (824)
+.++++.+.+.......+..+++|++|+|++|++++.+.... ..+++|++|+|++|++++..+ +..+++|++|+|++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 345666666654444444445556666666665555432211 235555555555555554332 45555555555555
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecC
Q 040845 128 NSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNC 207 (824)
Q Consensus 128 N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n 207 (824)
|++++.. ..++|++|++++|+++.++. ..+++|++|++++|
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N-------------------------- 130 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANN-------------------------- 130 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSS--------------------------
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCC--------------------------
Confidence 5555321 22455555555555544321 11334444444444
Q ss_pred cceecCCccCCCCCCCCEEEecCCccCCccchhhc-CCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCC
Q 040845 208 NVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLG-KLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIP 286 (824)
Q Consensus 208 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 286 (824)
++++..+..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|.+++. + ....+++|+.|++++|++++..+
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh
Confidence 44444445566677788888888888766666653 677888888888887754 2 22347778888888888875444
Q ss_pred ccccCCCCCcEEEcCCCCCCCCCCccccccccccccccccccc-CcCCccccccccchhhhcccc-cccccCCC
Q 040845 287 ACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFS-GPLPLEIRNLKALIEIDFSMN-NFSGIIPM 358 (824)
Q Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 358 (824)
.+..+++|+.|+|++|+++.+|..+..+++|+.|++++|++. +..+..+..+++|+.|++++| .+++..|.
T Consensus 209 -~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 209 -EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp -GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred -hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 477778888888888888888777777788888888888877 566677777788888888743 45554443
No 314
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.7e-29 Score=284.38 Aligned_cols=217 Identities=21% Similarity=0.227 Sum_probs=133.3
Q ss_pred CCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCC
Q 040845 169 NCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQ 248 (824)
Q Consensus 169 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 248 (824)
.+++|++|+|++|.+.++.+ ..|..+++|+.|+|++|.+++..| |..+++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~--------------------------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 83 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISA--------------------------ADLAPFTKLELLNLSSNVLYETLD--LESLSTLR 83 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCG--------------------------GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCC
T ss_pred cCCCccEEEeeCCcCCCCCH--------------------------HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCC
Confidence 34467777777777665544 445556666666666666654443 56666666
Q ss_pred EEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCC-CCccccccccccccccccc
Q 040845 249 DVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSI-PLNFWSLKDILDLNLSSNC 327 (824)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~l~~N~ 327 (824)
+|+|++|.|++.. ..++|+.|++++|.+++..+. .+++|+.|+|++|.++.+ |..+..+++|+.|+|++|.
T Consensus 84 ~L~Ls~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp EEECCSSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred EEEecCCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 6666666665322 225666666666666654443 235566666666666655 3345556666666666666
Q ss_pred ccCcCCcccc-ccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcc
Q 040845 328 FSGPLPLEIR-NLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPV 406 (824)
Q Consensus 328 l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 406 (824)
+++..|..+. .+++|+.|+|++|.|++..+ +..+++|+.|+|++|.|++ +|..|..+++|+.|+|++|.|+ .+|.
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 231 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccch
Confidence 6665555554 56667777777777665422 3346677777777777764 3334666677777777777776 4566
Q ss_pred cccCCcccceeeccCCccc
Q 040845 407 SLEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 407 ~~~~l~~L~~L~l~~N~l~ 425 (824)
.+..+++|+.|++++|++.
T Consensus 232 ~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 232 ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp TCCCCTTCCEEECTTCCBC
T ss_pred hhccCCCCCEEEcCCCCCc
Confidence 6666677777777777766
No 315
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.3e-28 Score=257.38 Aligned_cols=182 Identities=19% Similarity=0.243 Sum_probs=143.9
Q ss_pred CCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccc---------cccCCccEEEccCccccccCCcc
Q 040845 218 TNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSI---------CLSVELYELELGGNKLSGSIPAC 288 (824)
Q Consensus 218 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~ 288 (824)
+++++|++|+|++|.++ .+|..|..+++|++|+|++|.+.+.+|..+ ..+++|+.|++++|+++ .+|..
T Consensus 124 ~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred hccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh
Confidence 33444444444444444 334444444555555555544444444443 34788888888888888 66777
Q ss_pred ccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCe
Q 040845 289 FSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLEN 368 (824)
Q Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 368 (824)
++++++|++|+|++|.++.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|++.+.+|..++.+++|+.
T Consensus 202 l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred hcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 88888999999999999988888888999999999999998899999999999999999999999999999999999999
Q ss_pred EEccCccccccCCccccccccccEEEccCcccC
Q 040845 369 LFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 369 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
|+|++|.+.+.+|..++.+++|+.+++..|.+.
T Consensus 282 L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999988776
No 316
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=6.5e-30 Score=297.41 Aligned_cols=397 Identities=13% Similarity=0.046 Sum_probs=296.8
Q ss_pred CCCCCcEEEccCCcccccccccccCC--CCCCEEeCCCCc-CCc-ccChhhhCcCCCceeeccCCccccccCcc---ccC
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGHL--HNLGFLDLSQNK-LLG-TIPAAIFNVSTLKAFAVTNNSLSGCLSSI---TDV 91 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~ 91 (824)
.+++|++|+|++|.+++..+..++.+ .+|++|+|++|. ++. .++.....+++|++|+|++|.+++..... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 78999999999999998777777764 459999999997 321 13333457899999999999986543211 112
Q ss_pred CCCCccEEEccCCeee----eecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccC
Q 040845 92 GLPNLEVLYLWGNNFS----GTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSL 167 (824)
Q Consensus 92 ~l~~L~~L~L~~n~i~----~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l 167 (824)
.+++|++|+|++|.++ +.++..+.++++|++|+|++|.+.+ ++..+.++++|++|+++........ ......+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM--PEKYMNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC--TTSSSCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch--HHHHHHh
Confidence 5899999999999997 3455667789999999999999996 5688999999999999864332111 1123568
Q ss_pred CCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCC-ccCCCCCCCCEEEecCCccCC-ccchhhcCCC
Q 040845 168 SNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIP-EEITNLTDLTTIVLGGNKLNG-SIPITLGKLQ 245 (824)
Q Consensus 168 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~ 245 (824)
..+++|+.|+++++....++ .. .. ..++|++|++++|.+++... ..+..+++|+.|+++ +.+.. ..+..+..++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~-~~-~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMP-IL-FP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGG-GG-GG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCT
T ss_pred hccccccccCccccchhHHH-HH-Hh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCC
Confidence 88999999999987544332 22 22 24589999999999765443 446889999999999 44443 3444557789
Q ss_pred CCCEEEcc-----------cccCcccCCc-cccccCCccEEEccCccccccCCccccC-CCCCcEEEcC----CCCCCCC
Q 040845 246 KLQDVDLE-----------YNQLEGSIPD-SICLSVELYELELGGNKLSGSIPACFSN-MTFLKVLSLG----SNELTSI 308 (824)
Q Consensus 246 ~L~~L~L~-----------~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~l 308 (824)
+|++|+++ .|.+++.... .+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.++..
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 99999999 4677644322 2456899999999999998766666665 8999999996 7889886
Q ss_pred CCc------cccccccccccccccc--ccCcCCcccc-ccccchhhhccccccccc-CCCccCCCCCCCeEEccCccccc
Q 040845 309 PLN------FWSLKDILDLNLSSNC--FSGPLPLEIR-NLKALIEIDFSMNNFSGI-IPMEIGSLKNLENLFLEYNRLEG 378 (824)
Q Consensus 309 p~~------~~~l~~L~~L~l~~N~--l~~~~~~~~~-~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~ 378 (824)
|.. +.++++|+.|++++|. +++..+..+. .+++|+.|++++|++++. ++..+..+++|+.|+|++|.+++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 543 5568999999997543 5544444443 488999999999999863 34456789999999999999875
Q ss_pred c-CCccccccccccEEEccCcccCCCCcccc-cCCcccceeeccCC
Q 040845 379 S-IPDSFGDLISLKSLNLSYNNLSGTIPVSL-EKLSYLKDLNLSFN 422 (824)
Q Consensus 379 ~-~~~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~l~~N 422 (824)
. ++..+..+++|+.|+|++|+++..-...+ ..++.+....+..+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 4 34445678999999999999986533333 45677766666554
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1e-29 Score=270.35 Aligned_cols=266 Identities=20% Similarity=0.213 Sum_probs=139.7
Q ss_pred EEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEEC
Q 040845 99 LYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISL 178 (824)
Q Consensus 99 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~L 178 (824)
++++.+.+...+...+..+++|++|+|++|++++..|..|.++++|++|+|++|.++..+ .+..+++|++|++
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~L 87 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDL 87 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEEEC
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEEEC
Confidence 334444443333333333444555555555555444444555555555555555444321 1344455555555
Q ss_pred cCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCc
Q 040845 179 SNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 179 s~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
++|.+.++.+ .++|++|++++|++++..+. .+++|++|++++|++++..+..|..+++|++|+|++|.++
T Consensus 88 s~n~l~~l~~-------~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 88 NNNYVQELLV-------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CSSEEEEEEE-------CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cCCccccccC-------CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 5554432210 01222222222222222111 1345556666666665554555555555555555555555
Q ss_pred ccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccc
Q 040845 259 GSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRN 338 (824)
Q Consensus 259 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 338 (824)
+..+..+. ..+++|++|+|++|.++.+|... .+++|+.|++++|++++ +|..+..
T Consensus 158 ~~~~~~~~-----------------------~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~-l~~~~~~ 212 (317)
T 3o53_A 158 TVNFAELA-----------------------ASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQS 212 (317)
T ss_dssp EEEGGGGG-----------------------GGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred cccHHHHh-----------------------hccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc-chhhhcc
Confidence 44433332 23445555555555555443222 24555555555555553 3334666
Q ss_pred cccchhhhcccccccccCCCccCCCCCCCeEEccCcccc-ccCCccccccccccEEEccC-cccCCCCccc
Q 040845 339 LKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLE-GSIPDSFGDLISLKSLNLSY-NNLSGTIPVS 407 (824)
Q Consensus 339 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~ 407 (824)
+++|+.|++++|++++ +|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++ +.+++..|..
T Consensus 213 l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 7777777777777773 5666777888888888888887 66777788888888888884 4566555544
No 318
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=2.8e-29 Score=286.18 Aligned_cols=185 Identities=20% Similarity=0.122 Sum_probs=131.4
Q ss_pred eeeccceEEEEEE-ECCCcEEEEEEeeccc----------cchhhhHHHHHHHHhcC-CCCcceeEEeeeecCCeeEEEE
Q 040845 535 IGRGGFGSVYKAR-IRDGMEVAVKVFNLQC----------GRAFKSFDVECAMMKSI-RHRNLVKVISSCSNEEFKALVL 602 (824)
Q Consensus 535 lg~G~~g~V~~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 602 (824)
.+.|+.|.+..++ ..-|+.||||++.... ....+.+.+|+++|+++ .|+||++++++++++...||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4556666655553 3348899999997542 12345688999999999 6999999999999999999999
Q ss_pred eccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCC
Q 040845 603 EYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQ 682 (824)
Q Consensus 603 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~ 682 (824)
||++|++|.+++.+.+ .++.. +|+.||++||+|+| ++|||||||||+|||++++|.+||+|||+|+......
T Consensus 322 Eyv~G~~L~d~i~~~~-~l~~~---~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~- 393 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGE-EIDRE---KILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC- 393 (569)
T ss_dssp ECCCSEEHHHHHHTTC-CCCHH---HHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC----
T ss_pred ecCCCCcHHHHHHhCC-CCCHH---HHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC-
Confidence 9999999999998765 56653 58899999999999 9999999999999999999999999999998764332
Q ss_pred ccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCC
Q 040845 683 SMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPT 729 (824)
Q Consensus 683 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~ 729 (824)
......+||++|||||++.+ .+..++|+||+|++++++.++..++
T Consensus 394 -~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 394 -SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp -CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred -ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 22344679999999999865 5677899999999998887765543
No 319
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.7e-29 Score=262.23 Aligned_cols=202 Identities=22% Similarity=0.211 Sum_probs=102.7
Q ss_pred CCCCCceEeccCccccccCCccc--cCCCCCCEEEccCCcCCCCcCcccccccCCCC-----CCCcEEECcCCCCCccCC
Q 040845 116 NASKLSKLALEMNSFSGFIPSTF--GNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNC-----KSLTHISLSNNPLDGILP 188 (824)
Q Consensus 116 ~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~ 188 (824)
.+++|++|+|++|++++..|..+ .++++|++|+|++|+++..+.. +..+ ++|++|+|++|++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~~~l~~~~~~~L~~L~L~~N~l~---- 162 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW------LAELQQWLKPGLKVLSIAQAHSL---- 162 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH------HHHHHTTCCTTCCEEEEESCSCC----
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH------HHHHHHhhcCCCcEEEeeCCCCc----
Confidence 45555555555555555555544 5555666666666555544211 1111 33333333333332
Q ss_pred ccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCc--cchhh--cCCCCCCEEEcccccCcc---cC
Q 040845 189 RTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGS--IPITL--GKLQKLQDVDLEYNQLEG---SI 261 (824)
Q Consensus 189 ~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~L~~n~l~~---~~ 261 (824)
+..+..|+.+++|++|+|++|++.+. .+..+ ..+++|++|+|++|++++ ..
T Consensus 163 ----------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 220 (312)
T 1wwl_A 163 ----------------------NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220 (312)
T ss_dssp ----------------------CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH
T ss_pred ----------------------cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH
Confidence 22334445555555555555555432 12222 555666666666666552 11
Q ss_pred CccccccCCccEEEccCccccccCC-ccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccc
Q 040845 262 PDSICLSVELYELELGGNKLSGSIP-ACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLK 340 (824)
Q Consensus 262 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 340 (824)
...+..+++|+.|++++|++++..| ..+..+++|++|+|++|+|+.+|..+. ++|+.|++++|++++. |. +..++
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCC
Confidence 1223344566666666666655443 345556777777777777777665544 5555555555555533 32 44444
Q ss_pred cchhhhccccccc
Q 040845 341 ALIEIDFSMNNFS 353 (824)
Q Consensus 341 ~L~~L~l~~N~l~ 353 (824)
+|+.|++++|+++
T Consensus 297 ~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 297 QVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECTTCTTT
T ss_pred CCCEEeccCCCCC
Confidence 4444444444444
No 320
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.4e-29 Score=264.18 Aligned_cols=202 Identities=18% Similarity=0.186 Sum_probs=140.2
Q ss_pred CCCCCCEEEecCCccCCccchhh--cCCCCCCEEEcccccCcccCCcccccc-----CCccEEEccCccccccCCccccC
Q 040845 219 NLTDLTTIVLGGNKLNGSIPITL--GKLQKLQDVDLEYNQLEGSIPDSICLS-----VELYELELGGNKLSGSIPACFSN 291 (824)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~ 291 (824)
++++|++|+|++|++++..|..+ ..+++|++|+|++|++++. |..+..+ ++|++|++++|++.+..+..|++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45666666666666665555544 5666666666666666644 5555554 66666666666666666666666
Q ss_pred CCCCcEEEcCCCCCCC---CCCcc--cccccccccccccccccC---cCCccccccccchhhhcccccccccCC-CccCC
Q 040845 292 MTFLKVLSLGSNELTS---IPLNF--WSLKDILDLNLSSNCFSG---PLPLEIRNLKALIEIDFSMNNFSGIIP-MEIGS 362 (824)
Q Consensus 292 l~~L~~L~L~~N~l~~---lp~~~--~~l~~L~~L~l~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~ 362 (824)
+++|++|++++|++.. +|..+ ..+++|++|++++|.+++ .....+.++++|+.|++++|++++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 6666666666666543 12222 556666777777776662 122334567888888888888887664 45667
Q ss_pred CCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccC
Q 040845 363 LKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKG 426 (824)
Q Consensus 363 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 426 (824)
+++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 889999999999998 6777666 8899999999999854 66 8899999999999999875
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=5e-27 Score=264.15 Aligned_cols=235 Identities=20% Similarity=0.190 Sum_probs=139.6
Q ss_pred CCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCC
Q 040845 94 PNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSL 173 (824)
Q Consensus 94 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L 173 (824)
++|++|+|++|.+++..|..|..+++|++|+|++|.+++..| |.++++|++|+|++|.|+.++ ..++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCCCc
Confidence 355555555555555555555556666666666666554433 555666666666666555432 12556
Q ss_pred cEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhc-CCCCCCEEEc
Q 040845 174 THISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLG-KLQKLQDVDL 252 (824)
Q Consensus 174 ~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L 252 (824)
++|++++|.+.++.+.. .++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..|. .+++|++|+|
T Consensus 102 ~~L~L~~N~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 102 ETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CEEECCSSCCCCEEECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECcCCcCCCCCccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 66666666665543322 12455555555555555555566667777777777777766666665 5677777777
Q ss_pred ccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccccccccccccc-Cc
Q 040845 253 EYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFS-GP 331 (824)
Q Consensus 253 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~-~~ 331 (824)
++|.|++.. ....+++|+.|+|++|++++.++. +..+++|+.|+|++|.|+.+|..+..+++|+.|++++|.+. +.
T Consensus 177 s~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCcccccc--ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 777776442 223466667777777766654433 66666777777777777766666666666666666666665 34
Q ss_pred CCccccccccchhhhcc
Q 040845 332 LPLEIRNLKALIEIDFS 348 (824)
Q Consensus 332 ~~~~~~~l~~L~~L~l~ 348 (824)
+|..+..++.|+.|+++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 45555556666666554
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.7e-26 Score=235.66 Aligned_cols=227 Identities=22% Similarity=0.217 Sum_probs=135.9
Q ss_pred EEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEccc
Q 040845 175 HISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEY 254 (824)
Q Consensus 175 ~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 254 (824)
.++.++..+..++. .++.++++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 11 ~~~c~~~~l~~ip~-----~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPD-----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCS-----SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCC-----CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 45555555554432 1234455555555555544444555555555555555555544444455555555555555
Q ss_pred ccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC-cccccccccccccccccccCc-C
Q 040845 255 NQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL-NFWSLKDILDLNLSSNCFSGP-L 332 (824)
Q Consensus 255 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~-~ 332 (824)
|.+++ ..+..|.++++|++|++++|.++.++. .+..+++|++|++++|.+++. +
T Consensus 86 n~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l 141 (276)
T 2z62_A 86 NPIQS------------------------LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141 (276)
T ss_dssp CCCCE------------------------ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred CccCc------------------------cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecC
Confidence 55544 444444555555555555555554443 244455555555555555432 3
Q ss_pred CccccccccchhhhcccccccccCCCccCCCCCCC----eEEccCccccccCCccccccccccEEEccCcccCCCCcccc
Q 040845 333 PLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLE----NLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSL 408 (824)
Q Consensus 333 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 408 (824)
|..+.++++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+. ..+|+.|+|++|++++..+..+
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTT
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHh
Confidence 55666666666777777776666556666656565 788888888865554444 4588899999999886666667
Q ss_pred cCCcccceeeccCCcccCCCCCC
Q 040845 409 EKLSYLKDLNLSFNKLKGEIPRG 431 (824)
Q Consensus 409 ~~l~~L~~L~l~~N~l~~~~p~~ 431 (824)
..+++|+.|++++|+|+|.+|..
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccccEEEccCCcccccCCch
Confidence 88889999999999998888754
No 323
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.9e-28 Score=285.17 Aligned_cols=397 Identities=15% Similarity=0.096 Sum_probs=198.2
Q ss_pred cccCCCCCcEEEccCCcccccc---c------------ccccCCCCCCEEeCCCCcCCcccChhhh-CcCCCceeeccCC
Q 040845 16 EIDNISNLKVLYLYNNRLQGEI---I------------HEIGHLHNLGFLDLSQNKLLGTIPAAIF-NVSTLKAFAVTNN 79 (824)
Q Consensus 16 ~~~~l~~L~~L~L~~n~l~~~~---~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n 79 (824)
.+..+++|++|+|++|...... | ..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4567788888888887532111 1 1134677888888888888766666665 6788888888888
Q ss_pred -ccccccCccccCCCCCccEEEccCCeeeeecCcccc----CCCCCceEeccCcc--cccc-CCccccCCCCCCEEEccC
Q 040845 80 -SLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIF----NASKLSKLALEMNS--FSGF-IPSTFGNLRNLEWLTLYD 151 (824)
Q Consensus 80 -~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~----~l~~L~~L~L~~N~--i~~~-~~~~~~~l~~L~~L~L~~ 151 (824)
.++..........+++|++|+|++|.+++..+..+. .+++|++|+|++|. ++.. ....+.++++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 444311111112478888888888888765444443 56688888888886 2211 111224468888888888
Q ss_pred C-cCCCCcCcccccccCCCCCCCcEEECcCCCC-------CccCCccccccccccccEE-EeecCcceecCCccCCCCCC
Q 040845 152 N-NLTSSTLDLSFLSSLSNCKSLTHISLSNNPL-------DGILPRTYVGNLSHSLKNF-YMYNCNVSGGIPEEITNLTD 222 (824)
Q Consensus 152 n-~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l-------~~~~~~~~~~~l~~~L~~L-~l~~n~l~~~~~~~l~~l~~ 222 (824)
| .++. +...+..+++|++|+++.+.. .++.+ .+ .. .++|+.| .+.+... +.++..+..+++
T Consensus 221 ~~~~~~------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l-~~-~~~L~~Ls~~~~~~~-~~l~~~~~~~~~ 290 (594)
T 2p1m_B 221 AVPLEK------LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-AL-SG-CKELRCLSGFWDAVP-AYLPAVYSVCSR 290 (594)
T ss_dssp TSCHHH------HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HH-HT-CTTCCEEECCBTCCG-GGGGGGHHHHTT
T ss_pred CCcHHH------HHHHHhcCCcceEcccccccCccchhhHHHHHH-HH-hc-CCCcccccCCcccch-hhHHHHHHhhCC
Confidence 7 2222 123355667777777655431 11110 11 00 1234444 1111111 122222234455
Q ss_pred CCEEEecCCccCCccc-hhhcCCCCCCEEEcccccCcccC-CccccccCCccEEEccC---------ccccccCCcccc-
Q 040845 223 LTTIVLGGNKLNGSIP-ITLGKLQKLQDVDLEYNQLEGSI-PDSICLSVELYELELGG---------NKLSGSIPACFS- 290 (824)
Q Consensus 223 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~---------n~l~~~~~~~~~- 290 (824)
|++|+|++|.+++... ..+..+++|++|++++| ++... +.....+++|+.|++.+ +.+++.....+.
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 5555555555442211 12334555555555555 32111 11112345555555522 233221111111
Q ss_pred CCCCCcEEEcCCCCCCCCCC-ccc-ccccccccccc--c----ccccCcC-----CccccccccchhhhcccccccccCC
Q 040845 291 NMTFLKVLSLGSNELTSIPL-NFW-SLKDILDLNLS--S----NCFSGPL-----PLEIRNLKALIEIDFSMNNFSGIIP 357 (824)
Q Consensus 291 ~l~~L~~L~L~~N~l~~lp~-~~~-~l~~L~~L~l~--~----N~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~ 357 (824)
++++|+.|.++.|.++.... .+. .+++|+.|+++ + |.++... +..+..+++|+.|++++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 24555555555555543211 111 24555555555 2 3333111 11134455555666654 4443333
Q ss_pred CccCC-CCCCCeEEccCccccccCCccc-cccccccEEEccCcccCCCCcc-cccCCcccceeeccCCcc
Q 040845 358 MEIGS-LKNLENLFLEYNRLEGSIPDSF-GDLISLKSLNLSYNNLSGTIPV-SLEKLSYLKDLNLSFNKL 424 (824)
Q Consensus 358 ~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l 424 (824)
..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. ....+++|+.|++++|++
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 33333 5556666666665554333333 4455666666666665432222 233455666666666655
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.3e-25 Score=232.01 Aligned_cols=226 Identities=24% Similarity=0.262 Sum_probs=176.6
Q ss_pred CEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCC
Q 040845 145 EWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLT 224 (824)
Q Consensus 145 ~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 224 (824)
...+..+..++.+|.. + .++|++|++++|.+.++.+..|.. .++|++|++++|++++..+..|.++++|+
T Consensus 10 ~~~~c~~~~l~~ip~~------l--~~~l~~L~ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (276)
T 2z62_A 10 ITYQCMELNFYKIPDN------L--PFSTKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLS 79 (276)
T ss_dssp TEEECTTSCCSSCCSS------S--CTTCCEEECTTCCCCEECTTTTTT--CTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred ceEEecCCCccccCCC------C--CCCccEEECCCCcccccCHhHhcc--ccCCcEEECCCCcCCccCHHHccCCcCCC
Confidence 4567777788777643 2 258999999999999988766644 46899999999999998888999999999
Q ss_pred EEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCcccccc-CCccccCCCCCcEEEcCCC
Q 040845 225 TIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGS-IPACFSNMTFLKVLSLGSN 303 (824)
Q Consensus 225 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N 303 (824)
+|+|++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|++++. .|..|.++++|++|++++|
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 999999999988888999999999999999999876665677777777777777777653 3666666666666666666
Q ss_pred CCCCCCCcccccccccccccccccccCcCCccccccccch----hhhcccccccccCCCccCCCCCCCeEEccCcccccc
Q 040845 304 ELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALI----EIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGS 379 (824)
Q Consensus 304 ~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~----~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 379 (824)
+++.++ +..+..+++|+ .|++++|++++..+..+.. .+|+.|+|++|++++.
T Consensus 160 ~l~~~~-----------------------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 160 KIQSIY-----------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSV 215 (276)
T ss_dssp CCCEEC-----------------------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred CCCcCC-----------------------HHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeec
Confidence 666554 33444444444 6788888888666655554 4899999999999976
Q ss_pred CCccccccccccEEEccCcccCCCC
Q 040845 380 IPDSFGDLISLKSLNLSYNNLSGTI 404 (824)
Q Consensus 380 ~~~~~~~l~~L~~L~L~~N~l~~~~ 404 (824)
.+..|..+++|+.|+|++|++++..
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CHhHhcccccccEEEccCCcccccC
Confidence 6677888999999999999998543
No 325
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2e-25 Score=233.47 Aligned_cols=206 Identities=22% Similarity=0.191 Sum_probs=176.5
Q ss_pred CCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCc
Q 040845 217 ITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLK 296 (824)
Q Consensus 217 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 296 (824)
+.++++++++++++|.++. +|..+. ++++.|+|++|.+++..+..|..+++|+.|++++|.+++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4567788888888888884 444443 6788888888888877778888888888888888888865443 7888999
Q ss_pred EEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccc
Q 040845 297 VLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRL 376 (824)
Q Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 376 (824)
+|++++|+++.+|..+..+++|+.|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+|
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99999999999998888899999999999999987778899999999999999999988888889999999999999999
Q ss_pred cccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCC
Q 040845 377 EGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEI 428 (824)
Q Consensus 377 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~ 428 (824)
++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|.|.+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 9766677888999999999999998 88888888889999999999998765
No 326
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8.3e-25 Score=226.84 Aligned_cols=206 Identities=24% Similarity=0.302 Sum_probs=150.0
Q ss_pred CCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcC
Q 040845 222 DLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLG 301 (824)
Q Consensus 222 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 301 (824)
+.+.+++++++++ .+|..+. ++|++|+|++|++++..+..|..+++|++|++++|+++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3556666666666 3343332 456666666666665555566666666666666666665555666677777777777
Q ss_pred CCCCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccC
Q 040845 302 SNELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSI 380 (824)
Q Consensus 302 ~N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 380 (824)
+|+++.+|.. +..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 7777776654 455777777777777777666777788888888888888888776667888888888888888888766
Q ss_pred CccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 381 PDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 381 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|+|.|.++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 66788888888888888888866666688888888888888888877653
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.4e-25 Score=229.57 Aligned_cols=208 Identities=26% Similarity=0.261 Sum_probs=187.2
Q ss_pred hhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccc
Q 040845 240 TLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDIL 319 (824)
Q Consensus 240 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~ 319 (824)
.+.++++++++++++|.++ .+|..+. ++++.|++++|++++..+..|.++++|++|+|++|.|+.++.. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 3667899999999999999 5565543 6899999999999988899999999999999999999998765 7799999
Q ss_pred ccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcc
Q 040845 320 DLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNN 399 (824)
Q Consensus 320 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 399 (824)
.|++++|.++ .+|..+..+++|+.|++++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999998 678889999999999999999998888999999999999999999998778889999999999999999
Q ss_pred cCCCCcccccCCcccceeeccCCcccCCCCCCCCccccccccccCCccccCCC
Q 040845 400 LSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 400 l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
|++..+..+..+++|+.|+|++|+++..++.......+..+.+.+||+.|+|.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 99666667789999999999999999766665666778888999999999874
No 328
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=8e-26 Score=256.31 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=145.7
Q ss_pred CCCceeeeccceEEEEEEECCCcEEEEEEeecccc--------chhhhHHHHHHHHhcCCCCcceeEEeeeecCCeeEEE
Q 040845 530 SENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCG--------RAFKSFDVECAMMKSIRHRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 530 ~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 601 (824)
...+.||+|+||.||+|++. ++.+|+|....... ...+.+.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL-DFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEECS-SCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEEC-CCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 44678999999999999655 78899998643221 1134578999999999999999666666677778999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCC
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGED 681 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~ 681 (824)
|||+++++|.+++.. +..++.|+++|++||| +.+|+||||||+||+++. .+||+|||+|+......
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~ 483 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE 483 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence 999999999999875 5589999999999999 999999999999999998 99999999999764322
Q ss_pred Ccc-----ccccccccccccCccCcCC--CCCCccchHHHHHHHHHHHHhCCCCCc
Q 040845 682 QSM-----TQTQTLATIGYMAPEYGRE--GQVSTNGDVYSFGIMLMETFTRKKPTD 730 (824)
Q Consensus 682 ~~~-----~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslG~~l~el~tg~~p~~ 730 (824)
... ......||+.|||||++.. ..|+..+|+|+.++-..+-+.++.+|.
T Consensus 484 ~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 484 DKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 111 1234579999999999876 567888999999999998888877663
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=6.3e-25 Score=227.92 Aligned_cols=165 Identities=24% Similarity=0.251 Sum_probs=80.3
Q ss_pred CCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEE
Q 040845 219 NLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVL 298 (824)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 298 (824)
.+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 34444444444444444333344444444444444444443333333333333333333333333333333334444444
Q ss_pred EcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccc
Q 040845 299 SLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEG 378 (824)
Q Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 378 (824)
++++|+++ +..+..+.++++|+.|++++|++++..+..|..+++|+.|++++|.+.+
T Consensus 163 ~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 163 DLSYNQLQ-----------------------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ECCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCcC-----------------------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 44333333 3333344555555555555566555555556666666666666666553
Q ss_pred cCCccccccccccEEEccCcccCCCCcccccCCcc
Q 040845 379 SIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSY 413 (824)
Q Consensus 379 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 413 (824)
. +++|+.|++..|.++|.+|..++.++.
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred c-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 2 345666666666666666666655543
No 330
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=9.7e-24 Score=218.77 Aligned_cols=203 Identities=26% Similarity=0.275 Sum_probs=126.1
Q ss_pred CCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEE
Q 040845 172 SLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVD 251 (824)
Q Consensus 172 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 251 (824)
+.++++++++.++.++.. ++.++++|++++|++++..+..|.++++|++|+|++|.++...+..|..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~-----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCC-----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 345555555555543221 123444444444444444445566666677777777666655555566666666666
Q ss_pred cccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCc
Q 040845 252 LEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGP 331 (824)
Q Consensus 252 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~ 331 (824)
|++|++++..+..+..+++|++|++++|++++..+..|..+++|++|+|++|.++.+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------- 148 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL----------------------- 148 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-----------------------
Confidence 666666654444555555555555555555555555555555555555555555444
Q ss_pred CCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCC
Q 040845 332 LPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSG 402 (824)
Q Consensus 332 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 402 (824)
.+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44446666777777777777776666677788888888888888886666667888888888888888763
No 331
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.5e-24 Score=225.09 Aligned_cols=180 Identities=27% Similarity=0.277 Sum_probs=126.6
Q ss_pred CCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc-cccccccccc
Q 040845 243 KLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDL 321 (824)
Q Consensus 243 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L 321 (824)
.+++|++|++++|.+++. ..+..+++|++|++++|++++..+..|.++++|++|++++|+++.+|.. +..+++|+.|
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 334444444444443321 2333444444444444444444444455555555555555555555443 3445556666
Q ss_pred ccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccC
Q 040845 322 NLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 322 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
++++|.+++..+..+.++++|+.|++++|++++..+..|+.+++|+.|++++|++++..+..|..+++|+.|++++|++.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 66666666555667788999999999999999888888999999999999999999888888999999999999999998
Q ss_pred CCCcccccCCcccceeeccCCcccCCCCCC
Q 040845 402 GTIPVSLEKLSYLKDLNLSFNKLKGEIPRG 431 (824)
Q Consensus 402 ~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~ 431 (824)
+. ++.|+.+++..|.++|.+|..
T Consensus 219 ~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 219 CT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred cc-------CcHHHHHHHHHHhCCCcccCc
Confidence 54 457899999999999999873
No 332
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.7e-27 Score=277.14 Aligned_cols=403 Identities=14% Similarity=0.090 Sum_probs=285.4
Q ss_pred ccCCCCCcEEEccCCccccccccccc-CCCCCCEEeCCCC-cCCcc-cChhhhCcCCCceeeccCCccccccCcc---cc
Q 040845 17 IDNISNLKVLYLYNNRLQGEIIHEIG-HLHNLGFLDLSQN-KLLGT-IPAAIFNVSTLKAFAVTNNSLSGCLSSI---TD 90 (824)
Q Consensus 17 ~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~ 90 (824)
+..+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..... ..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 45789999999999999987777776 7999999999999 56532 4455568999999999999977533211 11
Q ss_pred CCCCCccEEEccCCe--eee-ecCccccCCCCCceEeccCc-cccccCCccccCCCCCCEEEccCCcCCCCcCc-ccccc
Q 040845 91 VGLPNLEVLYLWGNN--FSG-TIPHFIFNASKLSKLALEMN-SFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLD-LSFLS 165 (824)
Q Consensus 91 ~~l~~L~~L~L~~n~--i~~-~~~~~l~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~ 165 (824)
..+++|++|++++|. ++. .++..+..+++|++|+|++| .+++ ++..+.++++|++|+++.+...-.... ..+..
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 257899999999997 321 12233455799999999999 5554 677888999999999776542100000 01123
Q ss_pred cCCCCCCCcEE-ECcCCCCCccCCccccccccccccEEEeecCcceecC-CccCCCCCCCCEEEecCCccCCc-cchhhc
Q 040845 166 SLSNCKSLTHI-SLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGI-PEEITNLTDLTTIVLGGNKLNGS-IPITLG 242 (824)
Q Consensus 166 ~l~~l~~L~~L-~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~ 242 (824)
.+.++++|+.| .+.+.....+ +.. .. ..++|++|++++|.+++.. ...+..+++|+.|++++| +... .+....
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l-~~~-~~-~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYL-PAV-YS-VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGG-GGG-HH-HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHhcCCCcccccCCcccchhhH-HHH-HH-hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 56788999998 4443322211 111 11 2468999999999976543 233568899999999998 5422 223334
Q ss_pred CCCCCCEEEcc---------cccCcccCCcccc-ccCCccEEEccCccccccCCcccc-CCCCCcEEEcC--C----CCC
Q 040845 243 KLQKLQDVDLE---------YNQLEGSIPDSIC-LSVELYELELGGNKLSGSIPACFS-NMTFLKVLSLG--S----NEL 305 (824)
Q Consensus 243 ~l~~L~~L~L~---------~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----N~l 305 (824)
.+++|++|+++ .+.+++.....+. .+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.+
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l 415 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccc
Confidence 68999999994 3556544333333 478999999999998866555554 58999999999 4 677
Q ss_pred CCCCCc------ccccccccccccccccccCcCCccccc-cccchhhhcccccccccCCCcc-CCCCCCCeEEccCcccc
Q 040845 306 TSIPLN------FWSLKDILDLNLSSNCFSGPLPLEIRN-LKALIEIDFSMNNFSGIIPMEI-GSLKNLENLFLEYNRLE 377 (824)
Q Consensus 306 ~~lp~~------~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 377 (824)
+..|.. +..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.++
T Consensus 416 ~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 416 TLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp TCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred cCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 766542 45678999999987 666555555554 8899999999999976555555 66899999999999997
Q ss_pred ccCCc-cccccccccEEEccCcccCCCCcccc-cCCcccceeeccCCccc
Q 040845 378 GSIPD-SFGDLISLKSLNLSYNNLSGTIPVSL-EKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 378 ~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~l~~N~l~ 425 (824)
+.... ....+++|+.|++++|+++..-...+ ..++.|+...+..+.-.
T Consensus 495 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 495 DKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 54433 44568999999999999864333334 56788877777766443
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=8.9e-24 Score=214.87 Aligned_cols=197 Identities=17% Similarity=0.235 Sum_probs=106.9
Q ss_pred ccccEEEeecCcceecCCccCCCCCCCCEEEecCCc-cCCccchhhcCCCCCCEEEccc-ccCcccCCccccccCCccEE
Q 040845 197 HSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNK-LNGSIPITLGKLQKLQDVDLEY-NQLEGSIPDSICLSVELYEL 274 (824)
Q Consensus 197 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L 274 (824)
.++++|++++|++++..+..|.++++|++|++++|+ ++.+.+.+|.++++|++|++++ |+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~---------------- 94 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT---------------- 94 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC----------------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee----------------
Confidence 345555555555554444455555555555555554 4444444455555555555554 4554
Q ss_pred EccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccc---ccccccc-cccCcCCccccccccch-hhhccc
Q 040845 275 ELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDIL---DLNLSSN-CFSGPLPLEIRNLKALI-EIDFSM 349 (824)
Q Consensus 275 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~---~L~l~~N-~l~~~~~~~~~~l~~L~-~L~l~~ 349 (824)
+..+..|.++++|++|++++|+++.+|. +..+++|+ .|++++| .+++..+..|.++++|+ .|++++
T Consensus 95 --------~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 95 --------YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp --------EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred --------EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 4444445555555555555555555543 44444444 5555555 55544445566666666 666666
Q ss_pred ccccccCCCccCCCCCCCeEEccCcc-ccccCCcccccc-ccccEEEccCcccCCCCcccccCCcccceeeccCC
Q 040845 350 NNFSGIIPMEIGSLKNLENLFLEYNR-LEGSIPDSFGDL-ISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFN 422 (824)
Q Consensus 350 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 422 (824)
|+++.+.+..|.. ++|+.|++++|+ +++..+..|..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 166 n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 6666443334444 666666776663 665555566666 66777777777666 34433 4556666666554
No 334
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=9.1e-26 Score=247.29 Aligned_cols=189 Identities=21% Similarity=0.246 Sum_probs=116.2
Q ss_pred cCCCCCCCCEEEecCCccCC----ccchhhcCCCCCCEEEcccccCcccCCccccc----c---------CCccEEEccC
Q 040845 216 EITNLTDLTTIVLGGNKLNG----SIPITLGKLQKLQDVDLEYNQLEGSIPDSICL----S---------VELYELELGG 278 (824)
Q Consensus 216 ~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~---------~~L~~L~l~~ 278 (824)
.+..+++|++|+|++|.+++ .++..+..+++|++|+|++|.++...+..+.. + ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 34566777777777777765 35666777777777777777776443333332 2 6777777777
Q ss_pred cccc-ccCC---ccccCCCCCcEEEcCCCCCCC------CCCccccccccccccccccccc----CcCCccccccccchh
Q 040845 279 NKLS-GSIP---ACFSNMTFLKVLSLGSNELTS------IPLNFWSLKDILDLNLSSNCFS----GPLPLEIRNLKALIE 344 (824)
Q Consensus 279 n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~ 344 (824)
|+++ ...+ ..+..+++|++|+|++|+++. +|..+..+++|+.|+|++|.++ ..+|..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 7765 2222 345566777777777777762 2334555666666666666664 344555666666666
Q ss_pred hhccccccccc----CCCcc--CCCCCCCeEEccCccccc----cCCccc-cccccccEEEccCcccCCCC
Q 040845 345 IDFSMNNFSGI----IPMEI--GSLKNLENLFLEYNRLEG----SIPDSF-GDLISLKSLNLSYNNLSGTI 404 (824)
Q Consensus 345 L~l~~N~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~L~~N~l~~~~ 404 (824)
|+|++|.+++. ++..+ +.+++|+.|+|++|.+++ .+|..+ ..+++|+.|+|++|++++..
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 66666666543 33444 336667777777777665 255555 44667777777777776554
No 335
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=226.35 Aligned_cols=230 Identities=16% Similarity=0.129 Sum_probs=131.8
Q ss_pred CCCcEEECcCCCCCccCCccccc-cccccccEEEeecCcceecCCccC--CCCCCCCEEEecCCccCCccchhhcCCCCC
Q 040845 171 KSLTHISLSNNPLDGILPRTYVG-NLSHSLKNFYMYNCNVSGGIPEEI--TNLTDLTTIVLGGNKLNGSIPITLGKLQKL 247 (824)
Q Consensus 171 ~~L~~L~Ls~n~l~~~~~~~~~~-~l~~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 247 (824)
..++.|.+.++.+....-..+.. ....+|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~------- 136 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL------- 136 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-------
Confidence 45677777777664321111100 001235555555555555555544 45555555555555554322200
Q ss_pred CEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCC---CCC--cccccccccccc
Q 040845 248 QDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTS---IPL--NFWSLKDILDLN 322 (824)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---lp~--~~~~l~~L~~L~ 322 (824)
....+..+++|++|++++|++.+..+..|+.+++|++|+|++|++.. ++. .+..+++|++|+
T Consensus 137 -------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 137 -------------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp -------------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred -------------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 00122234455555555555544444555555555555555555432 211 123455566666
Q ss_pred cccccccCcCCc----cccccccchhhhcccccccccCCCccCCC---CCCCeEEccCccccccCCccccccccccEEEc
Q 040845 323 LSSNCFSGPLPL----EIRNLKALIEIDFSMNNFSGIIPMEIGSL---KNLENLFLEYNRLEGSIPDSFGDLISLKSLNL 395 (824)
Q Consensus 323 l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 395 (824)
|++|.++. ++. .+.++++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|+.|+|
T Consensus 204 Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 66666642 222 24566778888888888877667666665 68888888888888 5666654 68888888
Q ss_pred cCcccCCCCcccccCCcccceeeccCCcccC
Q 040845 396 SYNNLSGTIPVSLEKLSYLKDLNLSFNKLKG 426 (824)
Q Consensus 396 ~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 426 (824)
++|+|++ +|. +..+++|+.|++++|+|+.
T Consensus 280 s~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 8888884 344 5777888888888888864
No 336
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6e-25 Score=238.24 Aligned_cols=260 Identities=19% Similarity=0.138 Sum_probs=170.7
Q ss_pred CcccccccccCCcccccCCCCCcEEEccCCccccccc----ccccCCC-CCCEEeCCCCcCCcccChhhhCc-----CCC
Q 040845 2 PSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEII----HEIGHLH-NLGFLDLSQNKLLGTIPAAIFNV-----STL 71 (824)
Q Consensus 2 ~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~L 71 (824)
..|.+|++++.+|+.+...++|++|+|++|++++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3578899999999888888889999999999997766 7788888 89999999999987777777775 889
Q ss_pred ceeeccCCccccccCccc---cCCC-CCccEEEccCCeeeeecCcccc----C-CCCCceEeccCccccccCCc----cc
Q 040845 72 KAFAVTNNSLSGCLSSIT---DVGL-PNLEVLYLWGNNFSGTIPHFIF----N-ASKLSKLALEMNSFSGFIPS----TF 138 (824)
Q Consensus 72 ~~L~L~~n~l~~~~~~~~---~~~l-~~L~~L~L~~n~i~~~~~~~l~----~-l~~L~~L~L~~N~i~~~~~~----~~ 138 (824)
++|+|++|++++...... ...+ ++|++|+|++|++++..+..+. . .++|++|+|++|++++..+. .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999998876543311 1123 6888888888888765554433 3 36888888888888854433 33
Q ss_pred cCCC-CCCEEEccCCcCCCCcCcccccccCCCC-CCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCcc
Q 040845 139 GNLR-NLEWLTLYDNNLTSSTLDLSFLSSLSNC-KSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEE 216 (824)
Q Consensus 139 ~~l~-~L~~L~L~~n~i~~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 216 (824)
..++ +|++|+|++|+++..... .+...+..+ ++|++|+|++|.+.+.....+ +..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l----------------------~~~ 219 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCA-ELAKFLASIPASVTSLDLSANLLGLKSYAEL----------------------AYI 219 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHH-HHHHHHHTSCTTCCEEECTTSCGGGSCHHHH----------------------HHH
T ss_pred hcCCccccEeeecCCCCchhhHH-HHHHHHHhCCCCCCEEECCCCCCChhHHHHH----------------------HHH
Confidence 4554 888888888888765432 122334455 488888888888765432222 122
Q ss_pred CCC-CCCCCEEEecCCccCCccc----hhhcCCCCCCEEEcccccCcccC-------CccccccCCccEEEccCcccccc
Q 040845 217 ITN-LTDLTTIVLGGNKLNGSIP----ITLGKLQKLQDVDLEYNQLEGSI-------PDSICLSVELYELELGGNKLSGS 284 (824)
Q Consensus 217 l~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~~~~L~~L~l~~n~l~~~ 284 (824)
+.. .++|++|+|++|.+++..+ ..+..+++|++|+|++|.+.+.. +..+..+++|+.|++++|.+...
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 222 2356666666666554333 22344556666666666533222 22344555666666666666544
No 337
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=7.4e-25 Score=237.55 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=40.0
Q ss_pred EEccCCcccccccccccCCCCCCEEeCCCCcCCcccC----hhhhCcC-CCceeeccCCccccc
Q 040845 26 LYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIP----AAIFNVS-TLKAFAVTNNSLSGC 84 (824)
Q Consensus 26 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~ 84 (824)
+.|++|++++.+|..+...++|++|||++|.+++..+ .++..++ +|++|+|++|++++.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 66 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK 66 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH
Confidence 5677778877777666666668888888888775555 5565665 666666666666543
No 338
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=220.96 Aligned_cols=233 Identities=16% Similarity=0.146 Sum_probs=159.6
Q ss_pred CCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCC----ccC
Q 040845 142 RNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIP----EEI 217 (824)
Q Consensus 142 ~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~----~~l 217 (824)
..++.|.+.++.++..... ....+..+++|++|++++|.+.+..+..+...-..+|++|++++|.+++..+ ..+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLV--GALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHH--HHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHH--HHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 4688899998877542211 0111234567999999999999888877642235689999999999987554 344
Q ss_pred CCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcE
Q 040845 218 TNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKV 297 (824)
Q Consensus 218 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 297 (824)
..+++|++|+|++|++.+..+..|..+++|++|+|++|++.+... -..+..+..+++|++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------------~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG--------------------LMAALCPHKFPAIQN 201 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH--------------------HHTTSCTTSSCCCCS
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh--------------------hhHHHhhhcCCCCCE
Confidence 567788888888888877777777777777777777777653100 001222345566666
Q ss_pred EEcCCCCCCCCCCc----ccccccccccccccccccCcCCcccccc---ccchhhhcccccccccCCCccCCCCCCCeEE
Q 040845 298 LSLGSNELTSIPLN----FWSLKDILDLNLSSNCFSGPLPLEIRNL---KALIEIDFSMNNFSGIIPMEIGSLKNLENLF 370 (824)
Q Consensus 298 L~L~~N~l~~lp~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l---~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 370 (824)
|+|++|+++.++.. +..+++|++|+|++|++++..|..+..+ ++|+.|+|++|+|+ .+|..+. ++|+.|+
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 66666666655432 2345666677777777766556666555 57888888888887 4565554 7888888
Q ss_pred ccCccccccCCccccccccccEEEccCcccC
Q 040845 371 LEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 371 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
|++|+|++. |. +..+++|+.|+|++|+|+
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 888888853 43 677888888888888886
No 339
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=7.1e-23 Score=208.17 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=150.4
Q ss_pred CCCcEEECcCCCCCccCCccccccccccccEEEeecCc-ceecCCccCCCCCCCCEEEecC-CccCCccchhhcCCCCCC
Q 040845 171 KSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCN-VSGGIPEEITNLTDLTTIVLGG-NKLNGSIPITLGKLQKLQ 248 (824)
Q Consensus 171 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 248 (824)
++|++|++++|.+.++++..|.. .++|++|++++|+ ++...+..|.++++|++|++++ |+++...+..|.++++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~--l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSN--LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTT--CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccC--CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 48999999999999998877644 5689999999997 8888888999999999999999 999987778999999999
Q ss_pred EEEcccccCcccCCccccccCCcc---EEEccCc-cccccCCccccCCCCCc-EEEcCCCCCCCCCCccccccccccccc
Q 040845 249 DVDLEYNQLEGSIPDSICLSVELY---ELELGGN-KLSGSIPACFSNMTFLK-VLSLGSNELTSIPLNFWSLKDILDLNL 323 (824)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~lp~~~~~l~~L~~L~l 323 (824)
+|++++|++++ +|. +..+++|+ .|++++| ++++..+..|.++++|+ .|++++|+++.+|...+..++|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L----- 181 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL----- 181 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE-----
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC-----
Confidence 99999999985 555 77777777 8888888 88877777888888888 8888888888777543333444
Q ss_pred ccccccCcCCccccccccchhhhccccc-ccccCCCccCCC-CCCCeEEccCccccccCCccccccccccEEEccCc
Q 040845 324 SSNCFSGPLPLEIRNLKALIEIDFSMNN-FSGIIPMEIGSL-KNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYN 398 (824)
Q Consensus 324 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 398 (824)
+.|++++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 182 -------------------~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 -------------------DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp -------------------EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred -------------------CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 445555552 544444555555 666666666666663 3322 4456666666654
No 340
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.8e-22 Score=213.17 Aligned_cols=194 Identities=22% Similarity=0.327 Sum_probs=102.7
Q ss_pred ccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCC
Q 040845 41 IGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKL 120 (824)
Q Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L 120 (824)
++.+++|++|++++|.+. .++ ++..+++|++|+|++|++++++. ...+++|++|+|++|++++. ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 334555555555555554 222 35555555555555555554443 22355555555555555532 245556666
Q ss_pred ceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCcccccccccccc
Q 040845 121 SKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLK 200 (824)
Q Consensus 121 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~ 200 (824)
++|+|++|++++. + .+.++++|++|++++|.++.++ .+..+++|++|++++|.+.++.+
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~------------ 168 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS-------PLAGLTNLQYLSIGNAQVSDLTP------------ 168 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-------GGGGCTTCCEEECCSSCCCCCGG------------
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-------cccCCCCccEEEccCCcCCCChh------------
Confidence 6666666666543 2 2566666666666666665543 14555666666666665553311
Q ss_pred EEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCcc
Q 040845 201 NFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNK 280 (824)
Q Consensus 201 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 280 (824)
+..+++|+.|++++|.+++..+ +..+++|++|+|++|++++.. .+..+++|+.|++++|.
T Consensus 169 ----------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 169 ----------------LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp ----------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEE
T ss_pred ----------------hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCe
Confidence 3344555555555555553322 455555555555555555332 24555555666666665
Q ss_pred cc
Q 040845 281 LS 282 (824)
Q Consensus 281 l~ 282 (824)
++
T Consensus 229 i~ 230 (308)
T 1h6u_A 229 IT 230 (308)
T ss_dssp EE
T ss_pred ee
Confidence 55
No 341
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.7e-22 Score=217.71 Aligned_cols=167 Identities=17% Similarity=0.170 Sum_probs=85.7
Q ss_pred ecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccC-ccccccCCccccCCC-CCcEEEcCCCCC
Q 040845 228 LGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGG-NKLSGSIPACFSNMT-FLKVLSLGSNEL 305 (824)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~L~~N~l 305 (824)
+++|+++.+.|++|..+++|++|++++|+++...+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 334444444444455555555555555555444444444444555555533 345544555555553 466667777777
Q ss_pred CCCCCccccccccccccccc-ccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccc
Q 040845 306 TSIPLNFWSLKDILDLNLSS-NCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSF 384 (824)
Q Consensus 306 ~~lp~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 384 (824)
+.+|...+...+|+.|++++ |.++.+.+..|.++++|+.|+|++|+|+...+..|.++++|+.+++ +.++ .+| .+
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l 242 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TL 242 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CT
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-Cc
Confidence 66666655555666666653 4454433445566666666666666666444333333333322222 2333 344 25
Q ss_pred cccccccEEEccCc
Q 040845 385 GDLISLKSLNLSYN 398 (824)
Q Consensus 385 ~~l~~L~~L~L~~N 398 (824)
..+++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 55566666666544
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1e-24 Score=238.92 Aligned_cols=194 Identities=18% Similarity=0.253 Sum_probs=104.2
Q ss_pred CCCccEEEccCCeeee----ecCccccCCCCCceEeccCccccccCCccccC----C---------CCCCEEEccCCcCC
Q 040845 93 LPNLEVLYLWGNNFSG----TIPHFIFNASKLSKLALEMNSFSGFIPSTFGN----L---------RNLEWLTLYDNNLT 155 (824)
Q Consensus 93 l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~----l---------~~L~~L~L~~n~i~ 155 (824)
+++|++|+|++|.++. .++..+..+++|++|+|++|.++...+..+.. + ++|++|+|++|+++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 4566666666666654 34555666666666666666665433333332 2 66777777776665
Q ss_pred CCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccC-
Q 040845 156 SSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLN- 234 (824)
Q Consensus 156 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~- 234 (824)
..... .+...+..+++|++|+|++|.+....... ..+..+..+++|+.|+|++|.++
T Consensus 173 ~~~~~-~l~~~l~~~~~L~~L~L~~n~l~~~g~~~---------------------l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 173 NGSMK-EWAKTFQSHRLLHTVKMVQNGIRPEGIEH---------------------LLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp GGGHH-HHHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------HHHTTGGGCTTCCEEECCSSCCHH
T ss_pred cHHHH-HHHHHHHhCCCcCEEECcCCCCCHhHHHH---------------------HHHHHhhcCCCccEEECcCCCCCc
Confidence 32211 01123445566666666666654210000 11224555666777777777664
Q ss_pred ---CccchhhcCCCCCCEEEcccccCccc----CCcccc--ccCCccEEEccCccccc----cCCccc-cCCCCCcEEEc
Q 040845 235 ---GSIPITLGKLQKLQDVDLEYNQLEGS----IPDSIC--LSVELYELELGGNKLSG----SIPACF-SNMTFLKVLSL 300 (824)
Q Consensus 235 ---~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~--~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~L 300 (824)
..+|..+..+++|++|+|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 34555666666777777777766643 233332 25555555555555554 234333 44555666666
Q ss_pred CCCCCCCC
Q 040845 301 GSNELTSI 308 (824)
Q Consensus 301 ~~N~l~~l 308 (824)
++|.++..
T Consensus 311 ~~N~l~~~ 318 (386)
T 2ca6_A 311 NGNRFSEE 318 (386)
T ss_dssp TTSBSCTT
T ss_pred cCCcCCcc
Confidence 55555543
No 343
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-23 Score=226.31 Aligned_cols=224 Identities=19% Similarity=0.184 Sum_probs=151.9
Q ss_pred CCCEEeCCCCcCCcccChhhhCc--CCCceeeccCCccccccCccccCCCCCccEEEccCCeeeee-cCccccCCCCCce
Q 040845 46 NLGFLDLSQNKLLGTIPAAIFNV--STLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGT-IPHFIFNASKLSK 122 (824)
Q Consensus 46 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~ 122 (824)
.++.||+++|.+. +..+..+ ++++.|++++|.+.+.+.... .+++|++|+|++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC--CCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc--cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4778888888776 4556666 778888888888777666543 478888888888888755 6777788888888
Q ss_pred EeccCccccccCCccccCCCCCCEEEccCC-cCCCCcCcccccccCCCCCCCcEEECcCC-CCCccCCcccccccccccc
Q 040845 123 LALEMNSFSGFIPSTFGNLRNLEWLTLYDN-NLTSSTLDLSFLSSLSNCKSLTHISLSNN-PLDGILPRTYVGNLSHSLK 200 (824)
Q Consensus 123 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~L~ 200 (824)
|+|++|.+++..+..++++++|++|+|++| .++... +...+..+++|++|++++| .+++..
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~l~~~~------------- 185 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKH------------- 185 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHH-------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCCCCCEEcCCCCCCcChHH-------------
Confidence 888888888777777888888888888888 455321 1123556777777777777 665321
Q ss_pred EEEeecCcceecCCccCCCCC-CCCEEEecCC--ccC-CccchhhcCCCCCCEEEccccc-CcccCCccccccCCccEEE
Q 040845 201 NFYMYNCNVSGGIPEEITNLT-DLTTIVLGGN--KLN-GSIPITLGKLQKLQDVDLEYNQ-LEGSIPDSICLSVELYELE 275 (824)
Q Consensus 201 ~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 275 (824)
++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|+
T Consensus 186 ------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 186 ------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred ------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 122334456 7777777777 343 3445566677777777777777 6656666667777777777
Q ss_pred ccCcc-ccccCCccccCCCCCcEEEcCCC
Q 040845 276 LGGNK-LSGSIPACFSNMTFLKVLSLGSN 303 (824)
Q Consensus 276 l~~n~-l~~~~~~~~~~l~~L~~L~L~~N 303 (824)
+++|. +.......+.++++|+.|++++|
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77774 22222224666777777777766
No 344
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.3e-22 Score=205.94 Aligned_cols=175 Identities=25% Similarity=0.307 Sum_probs=78.5
Q ss_pred CEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCC
Q 040845 224 TTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSN 303 (824)
Q Consensus 224 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 303 (824)
++++++++.++ .+|..+. ++|+.|+|++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34444444444 2232222 34444444444444444444444444444444444444444444455555555555555
Q ss_pred CCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCc
Q 040845 304 ELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPD 382 (824)
Q Consensus 304 ~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 382 (824)
+++.+|.. |..+++|++|+|++|.+++..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 54444322 22333333333333333333333334444444444444444444444444444555555555555444344
Q ss_pred cccccccccEEEccCcccC
Q 040845 383 SFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 383 ~~~~l~~L~~L~L~~N~l~ 401 (824)
.|..+++|+.|+|++|+++
T Consensus 174 ~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTCTTCCEEECCSCCBC
T ss_pred HHhCCCCCCEEEeeCCcee
Confidence 4444445555555555444
No 345
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.8e-22 Score=205.31 Aligned_cols=183 Identities=23% Similarity=0.293 Sum_probs=167.3
Q ss_pred CCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc-cccccccccccc
Q 040845 245 QKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDLNL 323 (824)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~l 323 (824)
.+.++++++++.++ .+|..+. ++++.|++++|++++..+..|.++++|++|+|++|.++.++.. +..+++|+.|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46789999999998 5666554 6899999999999999999999999999999999999998765 788999999999
Q ss_pred ccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCC
Q 040845 324 SSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGT 403 (824)
Q Consensus 324 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 403 (824)
++|.+++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999988888899999999999999999988888899999999999999999977777899999999999999999977
Q ss_pred CcccccCCcccceeeccCCcccCCCCC
Q 040845 404 IPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 404 ~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
.+..+..+++|+.|++++|+|+|....
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 788899999999999999999987544
No 346
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.1e-22 Score=214.96 Aligned_cols=191 Identities=24% Similarity=0.331 Sum_probs=92.7
Q ss_pred CCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEc
Q 040845 221 TDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSL 300 (824)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 300 (824)
++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..+ +..+++|++|++++|++++. ..+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 344444444444432 12 23444444444444444442222 44444444444444444422 13444445555555
Q ss_pred CCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccC
Q 040845 301 GSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSI 380 (824)
Q Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 380 (824)
++|+++.++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 5555544442 4444555555555555543222 4555555555555555554322 555566666666666665322
Q ss_pred CccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccC
Q 040845 381 PDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKG 426 (824)
Q Consensus 381 ~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~ 426 (824)
+ +..+++|+.|+|++|++++.. .+..+++|+.|++++|++++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 2 555566666666666665322 25555666666666666654
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=8.9e-24 Score=226.97 Aligned_cols=228 Identities=20% Similarity=0.203 Sum_probs=166.5
Q ss_pred cccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCc-cchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEc
Q 040845 198 SLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGS-IPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELEL 276 (824)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 276 (824)
.++.|++.+|.+.+..+. +..+++|++|+|++|.+++. .+..+..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 445555555555444333 44577788888888877654 6667777788888888888777767777777788888888
Q ss_pred cCc-ccccc-CCccccCCCCCcEEEcCCC-CCCC--CCCcccccc-ccccccccccc--cc-CcCCccccccccchhhhc
Q 040845 277 GGN-KLSGS-IPACFSNMTFLKVLSLGSN-ELTS--IPLNFWSLK-DILDLNLSSNC--FS-GPLPLEIRNLKALIEIDF 347 (824)
Q Consensus 277 ~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~-~L~~L~l~~N~--l~-~~~~~~~~~l~~L~~L~l 347 (824)
++| .+++. .+..+.++++|++|++++| .++. ++..+..++ +|++|++++|. ++ +.++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 887 56642 4555777788888888888 7774 455566677 88888888884 43 345667788899999999
Q ss_pred cccc-ccccCCCccCCCCCCCeEEccCcc-ccccCCccccccccccEEEccCcccCCCCcccccCC-cccceeeccCCcc
Q 040845 348 SMNN-FSGIIPMEIGSLKNLENLFLEYNR-LEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKL-SYLKDLNLSFNKL 424 (824)
Q Consensus 348 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~l~~N~l 424 (824)
++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++. ..+..+ ..+..|++++|++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccC
Confidence 9999 777777788999999999999995 43322336888999999999999 442 234444 3477888999999
Q ss_pred cCCCCC
Q 040845 425 KGEIPR 430 (824)
Q Consensus 425 ~~~~p~ 430 (824)
++..|.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 998876
No 348
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=8.5e-23 Score=211.97 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=121.3
Q ss_pred HHHHHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeecccc------------------chhhhHHHHHHHHhcCC
Q 040845 520 LELFQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCG------------------RAFKSFDVECAMMKSIR 581 (824)
Q Consensus 520 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~ 581 (824)
..+......|.+.+.||+|+||.||+|.+.+|+.||||+++.... .....+.+|++++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 334445566778899999999999999987799999999864321 12456889999999999
Q ss_pred CCcceeEEeeeecCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeC
Q 040845 582 HRNLVKVISSCSNEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLD 661 (824)
Q Consensus 582 h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~ 661 (824)
| +++.+++.. +..++||||+++++|.+ +.. .+...++.|++.|++||| +.+|+||||||+||+++
T Consensus 163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~-------~~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~ 227 (282)
T 1zar_A 163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV-------ENPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS 227 (282)
T ss_dssp --T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE
T ss_pred --C-CCcCeEEec-cceEEEEEecCCCcHHH-cch-------hhHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE
Confidence 4 666665543 45689999999999988 422 134579999999999999 99999999999999999
Q ss_pred CCCcEEEeecccccccCCCCCccccccccccccccCccCcC
Q 040845 662 DNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGR 702 (824)
Q Consensus 662 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 702 (824)
++.+||+|||+|+. +..++|||++.
T Consensus 228 -~~~vkl~DFG~a~~---------------~~~~~a~e~l~ 252 (282)
T 1zar_A 228 -EEGIWIIDFPQSVE---------------VGEEGWREILE 252 (282)
T ss_dssp -TTEEEECCCTTCEE---------------TTSTTHHHHHH
T ss_pred -CCcEEEEECCCCeE---------------CCCCCHHHHHH
Confidence 99999999999873 33467888764
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1e-21 Score=211.64 Aligned_cols=238 Identities=17% Similarity=0.109 Sum_probs=159.3
Q ss_pred EEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccc-hhhcCCCCCCE-EEc
Q 040845 175 HISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIP-ITLGKLQKLQD-VDL 252 (824)
Q Consensus 175 ~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~L 252 (824)
+++.++++++.++. .++.++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.+++++.+ +.+
T Consensus 13 ~v~C~~~~Lt~iP~-----~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESKVTEIPS-----DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTTCCSCCT-----TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCCCCccCc-----CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 44555555554432 124456666666666665556678888999999999998865444 57888888775 566
Q ss_pred ccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCC-CCCCCCCCc-cccc-cccccccccccccc
Q 040845 253 EYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGS-NELTSIPLN-FWSL-KDILDLNLSSNCFS 329 (824)
Q Consensus 253 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l-~~L~~L~l~~N~l~ 329 (824)
+.|+++...|+.|..+++|++|++++|++....+..+....++..|++.+ |.++.+|.. |..+ ..++.|+|++|.|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77888877788888888888888888888877777777777788888854 677777654 4444 35777778888777
Q ss_pred CcCCccccccccchhhhccc-ccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccc
Q 040845 330 GPLPLEIRNLKALIEIDFSM-NNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSL 408 (824)
Q Consensus 330 ~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 408 (824)
.+.+..| ...+|+.|++++ |.++.+.++.|..+++|+.|+|++|+|+...+..| .+|+.|.+.++.-.+.+| .+
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CT
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-Cc
Confidence 4444333 445677777764 56665555567777777777777777774333333 344555544433233666 36
Q ss_pred cCCcccceeeccCC
Q 040845 409 EKLSYLKDLNLSFN 422 (824)
Q Consensus 409 ~~l~~L~~L~l~~N 422 (824)
..+++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777777777644
No 350
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.2e-20 Score=184.18 Aligned_cols=161 Identities=26% Similarity=0.271 Sum_probs=119.3
Q ss_pred cccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEcc
Q 040845 198 SLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELG 277 (824)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 277 (824)
++++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444445556778888888888888887666677888888888888888886666667788888888888
Q ss_pred CccccccCCccccCCCCCcEEEcCCCCCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhcccccccccC
Q 040845 278 GNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGII 356 (824)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 356 (824)
+|++++..+..|..+++|++|++++|+++.+|.. +..+++|+.|++++|.+.+ .+++|+.|+++.|++++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 8888877777778888888888888888877765 5667788888888887653 4557777778888887777
Q ss_pred CCccCCCCC
Q 040845 357 PMEIGSLKN 365 (824)
Q Consensus 357 ~~~~~~l~~ 365 (824)
|..++.++.
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 777766554
No 351
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=9e-21 Score=214.60 Aligned_cols=169 Identities=24% Similarity=0.307 Sum_probs=97.7
Q ss_pred CCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEc
Q 040845 221 TDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSL 300 (824)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 300 (824)
++|+.|+|++|+|+ .+| ..+++|++|+|++|+|++ +|. +.. +|+.|++++|+|++ +|. .+++|+.|+|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 34555555555555 233 234555555555555553 333 332 55555555555554 222 3555666666
Q ss_pred CCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCC-------CeEEccC
Q 040845 301 GSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNL-------ENLFLEY 373 (824)
Q Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-------~~L~L~~ 373 (824)
++|.|+.+|. .+++|+.|+|++|++++ +|. |. ++|+.|+|++|+|+ .+|. |.. +| +.|+|++
T Consensus 148 s~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 148 DNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred CCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 6666665554 34555556666666554 333 43 56666666666666 3344 443 55 8888888
Q ss_pred ccccccCCccccccccccEEEccCcccCCCCcccccCCcc
Q 040845 374 NRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSY 413 (824)
Q Consensus 374 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 413 (824)
|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..++.
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8887 56777777888888888888888777777766543
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2.6e-20 Score=210.79 Aligned_cols=183 Identities=25% Similarity=0.291 Sum_probs=158.3
Q ss_pred CCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEc
Q 040845 221 TDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSL 300 (824)
Q Consensus 221 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 300 (824)
.+|+.|+|++|.+++ +|..+ .++|++|+|++|+|+ .+| ..+++|+.|++++|+|++ +|. +.+ +|++|+|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999986 56544 388999999999999 566 457899999999999997 555 665 9999999
Q ss_pred CCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccC
Q 040845 301 GSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSI 380 (824)
Q Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 380 (824)
++|+|+.+|. .+++|+.|+|++|.+++ +|. .+++|+.|+|++|+|++ +|. |. ++|+.|+|++|+|+ .+
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 9999999998 68999999999999996 554 57899999999999997 566 66 99999999999999 67
Q ss_pred Cccccccccc-------cEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 381 PDSFGDLISL-------KSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 381 ~~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 76 665 77 99999999999 7899888899999999999999987764
No 353
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=188.04 Aligned_cols=154 Identities=25% Similarity=0.306 Sum_probs=105.1
Q ss_pred EEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC--cccccccccccccccccccCcCCccccccccchhhhcccc
Q 040845 273 ELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL--NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMN 350 (824)
Q Consensus 273 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 350 (824)
.+++++|.++. +|..+. +.+++|+|++|+|+.++. .|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44455554442 232221 234555555555555522 2445566666666666666555666777777777777777
Q ss_pred cccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCC
Q 040845 351 NFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 351 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 429 (824)
++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|+|+|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7777777777788888888888888887777778888888888888888887777788888888888888888887765
No 354
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.2e-19 Score=176.94 Aligned_cols=190 Identities=23% Similarity=0.223 Sum_probs=149.4
Q ss_pred ceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCcccccccccccc
Q 040845 121 SKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLK 200 (824)
Q Consensus 121 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~ 200 (824)
+.++++++.++. +|..+ .++|++|++++|.++.++.. .+..+++|++|++++|++.++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~~-------------- 67 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNG-----VFDELTSLTQLYLGGNKLQSL-------------- 67 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCCC--------------
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChh-----hhcccccCcEEECCCCccCcc--------------
Confidence 467777777774 34333 35788888888888766532 366777777777777777644
Q ss_pred EEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCcc
Q 040845 201 NFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNK 280 (824)
Q Consensus 201 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 280 (824)
.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus 68 ------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 68 ------------PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp ------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence 33456778899999999999987777778899999999999999997777778899999999999999
Q ss_pred ccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccc
Q 040845 281 LSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSG 354 (824)
Q Consensus 281 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 354 (824)
+++..+..|..+++|++|++++|.+. ..+++|+.|+++.|.+++.+|..++.++. ++..+...+
T Consensus 136 l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~ 199 (208)
T 2o6s_A 136 LKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSG 199 (208)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTC
T ss_pred cceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeeccCccccC----CccccccCC
Confidence 99888888999999999999999765 34678999999999999999998887765 444444443
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.7e-20 Score=185.97 Aligned_cols=136 Identities=23% Similarity=0.283 Sum_probs=86.6
Q ss_pred CCcEEEcCCCCCCCCCC-cccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEcc
Q 040845 294 FLKVLSLGSNELTSIPL-NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLE 372 (824)
Q Consensus 294 ~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~ 372 (824)
+|+.|++++|+|+.++. .|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|+|+...+..|..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44445555555544443 24444555555555555555556666666666677777777765555556677777777777
Q ss_pred CccccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCC
Q 040845 373 YNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 373 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 429 (824)
+|+|++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|.|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 777776666677777777777777777776556667777777777777777776543
No 356
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5e-20 Score=192.65 Aligned_cols=170 Identities=23% Similarity=0.323 Sum_probs=84.9
Q ss_pred CCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEE
Q 040845 219 NLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVL 298 (824)
Q Consensus 219 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 298 (824)
.+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +..+++|+.|++++|++++. ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 455666666666666533 2 35556666666666666654332 55555566666666655532 125555555555
Q ss_pred EcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccc
Q 040845 299 SLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEG 378 (824)
Q Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 378 (824)
++++|+++.++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 55555555542 344445555555555555432 334444444444444444443322 4444444444444444442
Q ss_pred cCCccccccccccEEEccCcccC
Q 040845 379 SIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 379 ~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
++ .+..+++|+.|++++|+++
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred -Ch-hhccCCCCCEEECcCCccc
Confidence 22 2444444444444444444
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1e-19 Score=208.35 Aligned_cols=192 Identities=22% Similarity=0.296 Sum_probs=119.6
Q ss_pred CCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEE
Q 040845 20 ISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVL 99 (824)
Q Consensus 20 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 99 (824)
+..+..+.|+.+.+.... .+..|++|+.|++++|.+.. ++ .+..+++|+.|+|++|++++++. ...+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEE
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEE
Confidence 334555566666666432 25566677777777777663 33 46667777777777777766554 2346777777
Q ss_pred EccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECc
Q 040845 100 YLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLS 179 (824)
Q Consensus 100 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls 179 (824)
+|++|++++ ++ .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|+|+.+ ..+..+++|++|+|+
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLE 161 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-------GGGGSCTTCSEEECC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-------hhhcccCCCCEEECc
Confidence 777777763 23 566777777777777777743 3577777777777777777664 236677777777777
Q ss_pred CCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcc
Q 040845 180 NNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEG 259 (824)
Q Consensus 180 ~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 259 (824)
+|.+.++.+ +..+++|+.|+|++|.|++. ..+..+++|+.|+|++|++.+
T Consensus 162 ~N~l~~~~~----------------------------l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 162 DNQISDIVP----------------------------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SSCCCCCGG----------------------------GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCcCCCchh----------------------------hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 777765422 33455556666666655532 235556666666666666553
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=7.5e-20 Score=197.84 Aligned_cols=179 Identities=22% Similarity=0.198 Sum_probs=109.2
Q ss_pred CEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCcccc-ccCCccEEEccCccccccCCccccCCCCCcEEEcCC
Q 040845 224 TTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSIC-LSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGS 302 (824)
Q Consensus 224 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 302 (824)
+.++++++.++. +|..+. +.++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666663 343332 3455666666666554444444 455555555555555544444555555555555555
Q ss_pred CCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCc
Q 040845 303 NELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPD 382 (824)
Q Consensus 303 N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 382 (824)
|+ ++...+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+.
T Consensus 98 N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 98 NH-----------------------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp SC-----------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred Cc-----------------------CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 44 4444445566667777777777777766677777777777777777777754444
Q ss_pred cc---cccccccEEEccCcccCCCCcccccCCcc--cceeeccCCcccCCC
Q 040845 383 SF---GDLISLKSLNLSYNNLSGTIPVSLEKLSY--LKDLNLSFNKLKGEI 428 (824)
Q Consensus 383 ~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~l~~N~l~~~~ 428 (824)
.| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|+|.|.+
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 44 45777888888888887555566666766 377777777777654
No 359
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.4e-19 Score=207.22 Aligned_cols=191 Identities=24% Similarity=0.345 Sum_probs=108.2
Q ss_pred CCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEe
Q 040845 45 HNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLA 124 (824)
Q Consensus 45 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ 124 (824)
.++..++++.+.+....+ +..+++|+.|++++|.++.++. + ..+++|+.|+|++|+|++..+ +..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~-l--~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG-I--QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT-G--GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH-H--ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345556666666664333 4556667777777776665542 2 236666666666666664433 55666666666
Q ss_pred ccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEe
Q 040845 125 LEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYM 204 (824)
Q Consensus 125 L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l 204 (824)
|++|.+++. ..|..+++|++|+|++|+|+.++ .+..+++|+.|+|++|.+.++
T Consensus 94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~-------~l~~l~~L~~L~Ls~N~l~~l------------------ 146 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN-------GLVHLPQLESLYLGNNKITDI------------------ 146 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTCCEEECTTSCCCCCG-------GGGGCTTCSEEECCSSCCCCC------------------
T ss_pred CcCCCCCCC--hhhccCCCCCEEEecCCCCCCCc-------cccCCCccCEEECCCCccCCc------------------
Confidence 666666532 24556666666666666655432 244555555555555555432
Q ss_pred ecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccc
Q 040845 205 YNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSG 283 (824)
Q Consensus 205 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (824)
..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|.+.+
T Consensus 147 ----------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 ----------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ----------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ----------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 234455666666666666665444 56666666666666666532 234555555555555555543
No 360
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.4e-19 Score=189.27 Aligned_cols=187 Identities=24% Similarity=0.318 Sum_probs=137.9
Q ss_pred EEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCC
Q 040845 226 IVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNEL 305 (824)
Q Consensus 226 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 305 (824)
+.++.+.+.+.. .+..+++|++|++++|.+... + .+..+++|+.|++++|++++..+ +.++++|++|++++|.+
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 344555555332 244677788888888888743 3 47777888888888888876544 77888888888888888
Q ss_pred CCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCcccc
Q 040845 306 TSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFG 385 (824)
Q Consensus 306 ~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 385 (824)
+.+|. +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..+ +.
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 87664 77788888888888888753 4677788888888888888765 567778888888888888875443 77
Q ss_pred ccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCC
Q 040845 386 DLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGE 427 (824)
Q Consensus 386 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 427 (824)
.+++|+.|++++|.++ .+|. +..+++|+.|++++|+++..
T Consensus 176 ~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred CCCccCEEECCCCcCC-CChh-hccCCCCCEEECcCCcccCC
Confidence 8888888888888887 4553 77788888888888887753
No 361
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.8e-19 Score=179.97 Aligned_cols=155 Identities=25% Similarity=0.285 Sum_probs=142.5
Q ss_pred cEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCcc
Q 040845 296 KVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNR 375 (824)
Q Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 375 (824)
+.+++++|.++.+|..+. ++|+.|++++|.+++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 678999999999998765 789999999999998888899999999999999999999989999999999999999999
Q ss_pred ccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC-CCCccccccccccCCccccCCC
Q 040845 376 LEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR-GGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 376 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
|+...+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++.++. ...+.++..+.+.+|++.|+|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9976667789999999999999999988899999999999999999999988775 4457788889999999999875
No 362
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=4.7e-19 Score=191.58 Aligned_cols=173 Identities=23% Similarity=0.189 Sum_probs=115.3
Q ss_pred EEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCC-CCCCCCEEEecCCccCCccchhhcCCCCCCEEEcc
Q 040845 175 HISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEIT-NLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLE 253 (824)
Q Consensus 175 ~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 253 (824)
.+++++|.+..++.. ++..++.|+|++|++++..+..+. ++++|+.|+|++|+|+++.+..|.++++|++|+|+
T Consensus 22 ~l~c~~~~l~~iP~~-----~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-----LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEECCSSCCSSCCSS-----CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEEeCCCCcCccCcc-----CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 444555444443221 233455555555555555556666 78888888888888887777778888888888888
Q ss_pred cccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcc----ccccccccccccccccc
Q 040845 254 YNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNF----WSLKDILDLNLSSNCFS 329 (824)
Q Consensus 254 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~----~~l~~L~~L~l~~N~l~ 329 (824)
+|+|+...+..|..+++|+.|+|++|+|....+..|.++++|+.|+|++|+|+.+|..+ ..+++|+.|+|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 88888777777888888888888888888777888888888888888888888877654 23555666666666555
Q ss_pred CcCCccccccccc--hhhhcccccc
Q 040845 330 GPLPLEIRNLKAL--IEIDFSMNNF 352 (824)
Q Consensus 330 ~~~~~~~~~l~~L--~~L~l~~N~l 352 (824)
...+..+..++.+ +.|+|++|.+
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 4433444444432 3344444443
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=177.60 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=101.5
Q ss_pred CEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCC-ccccccCCccEEEccCccccccCCccccCCCCCcEEEcCC
Q 040845 224 TTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIP-DSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGS 302 (824)
Q Consensus 224 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 302 (824)
+.+++++|.++. +|..+. +.+++|+|++|+|++..+ ..|..+++|+.|+|++|+|++..+..|.++++|++|+|
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L-- 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL-- 88 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC--
Confidence 466777777663 343332 344566666666664433 23445555555555555555444445555555555555
Q ss_pred CCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCc
Q 040845 303 NELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPD 382 (824)
Q Consensus 303 N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 382 (824)
++|.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|.
T Consensus 89 ---------------------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 89 ---------------------TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp ---------------------CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred ---------------------CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 55555545555677777788888888888877778888888888888888888877788
Q ss_pred cccccccccEEEccCcccCCCCc
Q 040845 383 SFGDLISLKSLNLSYNNLSGTIP 405 (824)
Q Consensus 383 ~~~~l~~L~~L~L~~N~l~~~~p 405 (824)
.|..+++|+.|+|++|++....+
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGG
T ss_pred HhcCCCCCCEEEecCcCCcCCCc
Confidence 88888888888888888875433
No 364
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.1e-18 Score=175.54 Aligned_cols=155 Identities=27% Similarity=0.343 Sum_probs=101.1
Q ss_pred CEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccccccccccc
Q 040845 248 QDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNC 327 (824)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~ 327 (824)
+.++.+++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|+|+.+|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~------------------ 80 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP------------------ 80 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC------------------
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC------------------
Confidence 44566666555 3333322 45555555555555555555555555555555555554443
Q ss_pred ccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCccc
Q 040845 328 FSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVS 407 (824)
Q Consensus 328 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 407 (824)
+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..
T Consensus 81 -----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 81 -----VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp -----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred -----hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 444566666777777777777666666777777888888888777 56777777778888888888887555566
Q ss_pred ccCCcccceeeccCCcccCCCC
Q 040845 408 LEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 408 ~~~l~~L~~L~l~~N~l~~~~p 429 (824)
+..+++|+.|++++|+++|.++
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 7777788888888888877765
No 365
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.1e-18 Score=175.43 Aligned_cols=155 Identities=24% Similarity=0.244 Sum_probs=139.9
Q ss_pred CcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCc
Q 040845 295 LKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYN 374 (824)
Q Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 374 (824)
.+.++.++++++.+|..+. ++|+.|+|++|.+++..|..|.++++|+.|+|++|+|+...+..|..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5678899999999987664 88999999999999888999999999999999999999877788999999999999999
Q ss_pred cccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC-CCCccccccccccCCccccCCC
Q 040845 375 RLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR-GGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.++. ...+.++..+.+.+|++.|.|+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999877778899999999999999999 8899999999999999999999977764 3456788889999999999875
No 366
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=5.1e-21 Score=217.98 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=71.8
Q ss_pred cCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCc-------------CCcccChhhhCcCCCceee-ccCCcccc
Q 040845 18 DNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNK-------------LLGTIPAAIFNVSTLKAFA-VTNNSLSG 83 (824)
Q Consensus 18 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 83 (824)
...++|+.|+|++|+++ .+|..++++++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45566666666666666 556666666666666665554 3344555555666666665 4444332
Q ss_pred ccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccc
Q 040845 84 CLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSF 163 (824)
Q Consensus 84 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 163 (824)
+|+.+.+++|.++...+ ..|+.|+|++|+|++ +|. |+++++|++|+|++|.|+.+|
T Consensus 424 -----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp----- 479 (567)
T 1dce_A 424 -----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALP----- 479 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCC-----
T ss_pred -----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccc-----
Confidence 33334444444442211 125555555555553 233 555555555555555554332
Q ss_pred cccCCCCCCCcEEECcCCCCC
Q 040845 164 LSSLSNCKSLTHISLSNNPLD 184 (824)
Q Consensus 164 ~~~l~~l~~L~~L~Ls~n~l~ 184 (824)
..+..+++|++|+|++|.|+
T Consensus 480 -~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 480 -PALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -GGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhcCCCCCEEECCCCCCC
Confidence 22344444444444444443
No 367
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=3e-19 Score=174.28 Aligned_cols=128 Identities=28% Similarity=0.348 Sum_probs=62.4
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc--ccccccccccccccccccCcCCccccccccchhhhccc
Q 040845 272 YELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN--FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSM 349 (824)
Q Consensus 272 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 349 (824)
+.+++++|+++ .+|..+.. +|++|++++|.|+.++.. +..+++|+.|+|++|.+++..|..|.++++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554 23332221 455555555555555432 44455555555555555544444455555555555555
Q ss_pred ccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCC
Q 040845 350 NNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSG 402 (824)
Q Consensus 350 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 402 (824)
|+|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 55544444444445555555555555544444444444555555555554443
No 368
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=7e-19 Score=180.89 Aligned_cols=168 Identities=22% Similarity=0.292 Sum_probs=87.2
Q ss_pred cCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEE
Q 040845 68 VSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWL 147 (824)
Q Consensus 68 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 147 (824)
+.++..+++++|.+++++. . ..+++|++|++++|+++ .++ .+..+++|++|+|++|++++..+ |.++++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~~-~--~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS-Q--KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC-H--HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcccccc-h--hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3445555555555554431 1 12455555555555555 223 45555566666666666554332 5556666666
Q ss_pred EccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEE
Q 040845 148 TLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIV 227 (824)
Q Consensus 148 ~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 227 (824)
+|++|+++.++. +.. ++|++|+|++|.+.++ ..+..+++|+.|+
T Consensus 91 ~L~~N~l~~l~~-------~~~-~~L~~L~L~~N~l~~~----------------------------~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 91 SVNRNRLKNLNG-------IPS-ACLSRLFLDNNELRDT----------------------------DSLIHLKNLEILS 134 (263)
T ss_dssp ECCSSCCSCCTT-------CCC-SSCCEEECCSSCCSBS----------------------------GGGTTCTTCCEEE
T ss_pred ECCCCccCCcCc-------ccc-CcccEEEccCCccCCC----------------------------hhhcCcccccEEE
Confidence 666666555431 112 5555555555554432 1244556666666
Q ss_pred ecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCcccc
Q 040845 228 LGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLS 282 (824)
Q Consensus 228 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (824)
|++|++++. + .+..+++|++|+|++|++++. ..+..+++|+.|++++|++.
T Consensus 135 Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 135 IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 666666543 2 455566666666666666543 34444555555555555554
No 369
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=7.3e-19 Score=187.62 Aligned_cols=263 Identities=14% Similarity=0.116 Sum_probs=131.2
Q ss_pred cCCCceeeccCCccc--cccCccccCCCCCccEEEccCCeeeeecCccccC--------CCCCceEeccCccccccCCcc
Q 040845 68 VSTLKAFAVTNNSLS--GCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFN--------ASKLSKLALEMNSFSGFIPST 137 (824)
Q Consensus 68 l~~L~~L~L~~n~l~--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~--------l~~L~~L~L~~N~i~~~~~~~ 137 (824)
+++|++|||++|++. ..... .++.++.+.+..|.| .+..|.+ +++|++|+|.+ .++.+.+.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~----~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAG----TYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSS----SSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred hccCeEEecCcceeEEecCccc----ccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence 445555555555554 11111 122344445555532 2345555 77777777777 677677777
Q ss_pred ccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccC
Q 040845 138 FGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEI 217 (824)
Q Consensus 138 ~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l 217 (824)
|.++++|++|++++|.+..++. .+|..+.++..+.+..+.... .........|
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~-----~aF~~~~~l~~l~~~~~~~~~----------------------~~~~i~~~~f 172 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLP-----EALADSVTAIFIPLGSSDAYR----------------------FKNRWEHFAF 172 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECT-----TSSCTTTCEEEECTTCTHHHH----------------------TSTTTTTSCE
T ss_pred hhcCcccceEEcCCCCccccch-----hhhcCCCceEEecCcchhhhh----------------------cccccccccc
Confidence 7777777777777777766554 235666666666554422100 0000111233
Q ss_pred CCCCCCC-EEEecCCccCCccchhh----cCCCCCCEEEcccccCcccCCccc-cccCCccEEEccCccccccCCccccC
Q 040845 218 TNLTDLT-TIVLGGNKLNGSIPITL----GKLQKLQDVDLEYNQLEGSIPDSI-CLSVELYELELGGNKLSGSIPACFSN 291 (824)
Q Consensus 218 ~~l~~L~-~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~ 291 (824)
.++..|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+.+|.+
T Consensus 173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp EESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred ccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 3444444 33333321 112211 12344555555443221 111111 12455555555555555555555656
Q ss_pred CCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccch-hhhcccccccccCCCccCCCCCCCeEE
Q 040845 292 MTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALI-EIDFSMNNFSGIIPMEIGSLKNLENLF 370 (824)
Q Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~l~~L~~L~ 370 (824)
+++|+.|+|.+| ++.|+ +.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.|+
T Consensus 249 ~~~L~~l~l~~n-i~~I~-----------------------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIG-----------------------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEECCTT-CCEEC-----------------------TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCCCEEECCcc-cceeh-----------------------HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 655666655554 44443 44455555555 555555 44445555566666666666
Q ss_pred ccCccccccCCccccccccccEEE
Q 040845 371 LEYNRLEGSIPDSFGDLISLKSLN 394 (824)
Q Consensus 371 L~~N~l~~~~~~~~~~l~~L~~L~ 394 (824)
+++|.++...+.+|.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 666666554455566666666554
No 370
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=5.8e-19 Score=207.53 Aligned_cols=196 Identities=18% Similarity=0.135 Sum_probs=120.0
Q ss_pred CCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCC
Q 040845 142 RNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLT 221 (824)
Q Consensus 142 ~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~ 221 (824)
+.++.|+|.+|.+...+. ..|+.++|+.|.|.+ +++..|.+. ..+..+..++
T Consensus 173 ~~~~~l~L~~n~~~~~~~-----------~~l~~l~Ls~~~i~~----------------~~~~~n~~~-~~~~~~~~l~ 224 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQ-----------ALLQHKKLSQYSIDE----------------DDDIENRMV-MPKDSKYDDQ 224 (727)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CccceEEeeCCCCCcchh-----------hHhhcCccCcccccC----------------cccccccee-cChhhhccCC
Confidence 445666666666654321 234555555555432 233344444 5577788899
Q ss_pred CCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcC
Q 040845 222 DLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLG 301 (824)
Q Consensus 222 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 301 (824)
+|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|+|+ .+|..|+++++|++|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 9999999999998 56666668999999999999999 78888999999999999999999 668889999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccccCcCCcccccccc-chhhhcccccccccCCCccCCCCCCCeEEccCc
Q 040845 302 SNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKA-LIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYN 374 (824)
Q Consensus 302 ~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 374 (824)
+|.|+.+|..|..+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|. .|+.|++++|
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 9999999999999999999999999999888887766543 34578999999877765 4556677776
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=4.1e-19 Score=182.60 Aligned_cols=168 Identities=21% Similarity=0.256 Sum_probs=108.6
Q ss_pred CCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEE
Q 040845 220 LTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLS 299 (824)
Q Consensus 220 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 299 (824)
+.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|++++..+ +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455666677777776433 46677777888888777773 33 56777777777777777775544 77777888888
Q ss_pred cCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCcccccc
Q 040845 300 LGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGS 379 (824)
Q Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 379 (824)
+++|+++.+|.... ++|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|+|++|++++.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 88887777764332 6666666666666642 2455666666666666666543 2 455666666666666666643
Q ss_pred CCccccccccccEEEccCcccC
Q 040845 380 IPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 380 ~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
..+..+++|+.|++++|+++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 44566666666666666665
No 372
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.4e-18 Score=170.55 Aligned_cols=150 Identities=18% Similarity=0.247 Sum_probs=88.2
Q ss_pred CCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcc
Q 040845 269 VELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFS 348 (824)
Q Consensus 269 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 348 (824)
++|+.|++++|.++ .++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 33444444444443 122 2444445555555555444433 34445555555555555555555666666777777777
Q ss_pred cccccccCCCccCCCCCCCeEEccCcc-ccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCccc
Q 040845 349 MNNFSGIIPMEIGSLKNLENLFLEYNR-LEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 349 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 425 (824)
+|++++..+..++.+++|++|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 777766566667777777777777776 55 344 57777777777777777763 44 5667777777777777764
No 373
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.74 E-value=7.3e-19 Score=180.16 Aligned_cols=138 Identities=21% Similarity=0.270 Sum_probs=107.2
Q ss_pred cCCCCceeeeccceEEEEEEE-CCCcE--EEEEEeeccccc------------------------hhhhHHHHHHHHhcC
Q 040845 528 KFSENNLIGRGGFGSVYKARI-RDGME--VAVKVFNLQCGR------------------------AFKSFDVECAMMKSI 580 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~l 580 (824)
-|++.+.||+|+||.||+|.+ .+|+. ||||+++..... ....+.+|+.+++++
T Consensus 48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l 127 (258)
T 1zth_A 48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA 127 (258)
T ss_dssp EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999987 67989 999987543111 113578899999999
Q ss_pred CCCcc--eeEEeeeecCCeeEEEEeccCC-C----CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCC
Q 040845 581 RHRNL--VKVISSCSNEEFKALVLEYMPH-G----SLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDL 653 (824)
Q Consensus 581 ~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 653 (824)
+|+++ +.+++. ...++||||+.+ | +|.++... .++.++..++.|++.|++|||. +.+|+||||
T Consensus 128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDl 197 (258)
T 1zth_A 128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADL 197 (258)
T ss_dssp HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSC
T ss_pred HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCC
Confidence 88764 344432 356899999942 3 77776543 2244577899999999999994 579999999
Q ss_pred CCCCeeeCCCCcEEEeeccccccc
Q 040845 654 KPSNVLLDDNMVAHLSDFGIAKLL 677 (824)
Q Consensus 654 k~~Nill~~~~~~kl~Dfg~a~~~ 677 (824)
||+|||++. .++|+|||+|...
T Consensus 198 kp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 198 SEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp STTSEEESS--SEEECCCTTCEET
T ss_pred CHHHEEEcC--cEEEEECcccccC
Confidence 999999998 9999999999754
No 374
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=3.2e-20 Score=211.38 Aligned_cols=180 Identities=22% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCCCCCEEEecCCccCCccchhhcCCCCCCEEEccccc-------------CcccCCccccccCCccEEE-ccCccccc
Q 040845 218 TNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQ-------------LEGSIPDSICLSVELYELE-LGGNKLSG 283 (824)
Q Consensus 218 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~~~~L~~L~-l~~n~l~~ 283 (824)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 55677777888888876 667777777888888776664 3445556666666666666 44443321
Q ss_pred cCCc-----cccC--CCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccC
Q 040845 284 SIPA-----CFSN--MTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGII 356 (824)
Q Consensus 284 ~~~~-----~~~~--l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 356 (824)
.... .+.. ...|+.|+|++|.|+.+|. +..+++|+.|+|++|.++ .+|..|+++++|+.|+|++|+|++ +
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 0000 0000 0135555555555555554 555555555555555555 445555555555555555555554 3
Q ss_pred CCccCCCCCCCeEEccCccccccC-CccccccccccEEEccCcccCC
Q 040845 357 PMEIGSLKNLENLFLEYNRLEGSI-PDSFGDLISLKSLNLSYNNLSG 402 (824)
Q Consensus 357 ~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 402 (824)
| .++.+++|+.|+|++|+|++.. |..|+.+++|+.|+|++|+|++
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 3 4555555555555555555443 5555555555555555555553
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=3.6e-18 Score=167.57 Aligned_cols=131 Identities=16% Similarity=0.250 Sum_probs=63.4
Q ss_pred cCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCc
Q 040845 42 GHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLS 121 (824)
Q Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 121 (824)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++..+ . ...+++|++|++++|++++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-P--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-G--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-h--hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44555555555555555 333 3555555555555555443332 1 12345555555555555544444455555555
Q ss_pred eEeccCccccccCCccccCCCCCCEEEccCCc-CCCCcCcccccccCCCCCCCcEEECcCCCCC
Q 040845 122 KLALEMNSFSGFIPSTFGNLRNLEWLTLYDNN-LTSSTLDLSFLSSLSNCKSLTHISLSNNPLD 184 (824)
Q Consensus 122 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 184 (824)
+|+|++|++++..+..|+++++|++|++++|+ ++.++ .+..+++|++|++++|.+.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-------~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-------PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-------GGGGCSSCCEEECTTBCCC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-------hhcCCCCCCEEECCCCCCc
Confidence 55555555554444445555555555555554 43332 1344444444444444443
No 376
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=4.1e-19 Score=208.82 Aligned_cols=163 Identities=24% Similarity=0.196 Sum_probs=89.6
Q ss_pred EEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCC
Q 040845 226 IVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNEL 305 (824)
Q Consensus 226 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 305 (824)
+++..|.+. ..+..|..+++|+.|+|++|.+. .+|..+..+++|++|+|++|+|+ .+|..|+++++|++|+|++|.|
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 344455555 55667777777777777777777 55555556777777777777776 5566667777777777777777
Q ss_pred CCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCC-CCeEEccCccccccCCccc
Q 040845 306 TSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKN-LENLFLEYNRLEGSIPDSF 384 (824)
Q Consensus 306 ~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~ 384 (824)
+.+|..+..+++|+.|+|++|.|+ .+|..|+++++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred CccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 777666666666666666666665 45555666666666666666666665555544321 12355666666655553
Q ss_pred cccccccEEEccCc
Q 040845 385 GDLISLKSLNLSYN 398 (824)
Q Consensus 385 ~~l~~L~~L~L~~N 398 (824)
.|+.|++++|
T Consensus 360 ----~l~~l~l~~n 369 (727)
T 4b8c_D 360 ----ERRFIEINTD 369 (727)
T ss_dssp ----C---------
T ss_pred ----ccceeEeecc
Confidence 2344455554
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=9.7e-18 Score=163.57 Aligned_cols=155 Identities=25% Similarity=0.314 Sum_probs=126.9
Q ss_pred cEEEcCCCCCCCCCCcccccccccccccccccccCcCCc-cccccccchhhhcccccccccCCCccCCCCCCCeEEccCc
Q 040845 296 KVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPL-EIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYN 374 (824)
Q Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 374 (824)
+.+++++|.++++|..+.. +|+.|++++|.+++..+. .|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6889999999999887654 889999999999876654 4888999999999999999888889999999999999999
Q ss_pred cccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCCCCCccccccccccCCccccCCC
Q 040845 375 RLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGGSFGNFSAESFKGNELLCGSP 452 (824)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 452 (824)
+|++..+..|..+++|+.|+|++|+|++..|..+..+++|+.|+|++|+|+|.++.......+....+.++...|+.|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 999877888889999999999999999888888999999999999999999887642222223333455666677766
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=7.6e-18 Score=179.71 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=196.9
Q ss_pred CCCCCcEEEccCCcccccccccccC-CCCCCEEeCCCCcCC--cccChhhhCcCCCceeeccCCccccccCccccCC---
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGH-LHNLGFLDLSQNKLL--GTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVG--- 92 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--- 92 (824)
.+.++++|.++++ +.......+.. +++|++|||++|+|. ...+..+ +.++.+.+..|.|. .. .+.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~-aF~~~~~ 94 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AY-AFSNVVN 94 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TT-TTEEEET
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HH-Hhccccc
Confidence 3678999999876 33222334444 889999999999998 3222222 23556666666432 22 2345
Q ss_pred -----CCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcC----CCCcCcccc
Q 040845 93 -----LPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNL----TSSTLDLSF 163 (824)
Q Consensus 93 -----l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~~ 163 (824)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++.+|.+..+.+.+|.++.++..+.+..+.. ..+..
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~---- 169 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH---- 169 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT----
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc----
Confidence 89999999999 88878888899999999999999999888899999988888887766322 11111
Q ss_pred cccCCCCCCCc-EEECcCCCCCccCCcccc-ccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhh
Q 040845 164 LSSLSNCKSLT-HISLSNNPLDGILPRTYV-GNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITL 241 (824)
Q Consensus 164 ~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~-~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 241 (824)
.+|.++.+|+ .+.+....- +....+. ...+.++..+.+.++-...........+++|+.|+|++|+++.+.+.+|
T Consensus 170 -~~f~~~~~L~~~i~~~~~~~--l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 170 -FAFIEGEPLETTIQVGAMGK--LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp -SCEEESCCCEEEEEECTTCC--HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred -cccccccccceeEEecCCCc--HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 2355566666 455543221 1111110 0123456666666542211111111237888888888888887777788
Q ss_pred cCCCCCCEEEcccccCcccCCccccccCCcc-EEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc-cccccccc
Q 040845 242 GKLQKLQDVDLEYNQLEGSIPDSICLSVELY-ELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDIL 319 (824)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~ 319 (824)
.++++|++|+|.+| ++.+.+.+|..+.+|+ .+++.+ .++.+.+.+|.++++|+.|++++|.++.++.. |.++++|+
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 88888888888887 7767777888888888 888888 77777788888888899999888888888764 77788888
Q ss_pred cccc
Q 040845 320 DLNL 323 (824)
Q Consensus 320 ~L~l 323 (824)
.++.
T Consensus 325 ~ly~ 328 (329)
T 3sb4_A 325 LIYK 328 (329)
T ss_dssp EEEC
T ss_pred hhcc
Confidence 7753
No 379
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.71 E-value=4.5e-16 Score=169.38 Aligned_cols=266 Identities=13% Similarity=0.147 Sum_probs=159.3
Q ss_pred CCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccE
Q 040845 19 NISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEV 98 (824)
Q Consensus 19 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 98 (824)
....++.+.+.+ .++......|.+. +|+.+++..| ++.+...+|.++ +|+.+.+.+ .++.+.... +.++++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a-F~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI-FYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST-TTTCTTCCE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH-hhCcccCCe
Confidence 345666666654 3444555666664 5777777665 554555666663 577777764 555544443 346777777
Q ss_pred EEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEEC
Q 040845 99 LYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISL 178 (824)
Q Consensus 99 L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~L 178 (824)
++|++|+++......|. ..+|+.+.|..+ ++.+...+|.++++|+.+++..| ++.++. .+|.+ .+|+.+.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~-----~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ-----EAFRE-SGITTVKL 255 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT-----TTTTT-CCCSEEEE
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc-----ccccc-CCccEEEe
Confidence 77777777755555554 477777777643 66666777777777777777654 444433 23444 56666666
Q ss_pred cCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccC-----CccchhhcCCCCCCEEEcc
Q 040845 179 SNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLN-----GSIPITLGKLQKLQDVDLE 253 (824)
Q Consensus 179 s~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~ 253 (824)
. +.+..+ ...+|.+|++|+.+++.+|.+. .+.+.+|.++++|+.++|.
T Consensus 256 p-~~i~~I--------------------------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 256 P-NGVTNI--------------------------ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp E-TTCCEE--------------------------CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred C-CCccEE--------------------------ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 3 223322 2344555666666666655543 3445566666666666666
Q ss_pred cccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc-cccc-cccccccccccccc
Q 040845 254 YNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSL-KDILDLNLSSNCFS 329 (824)
Q Consensus 254 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l-~~L~~L~l~~N~l~ 329 (824)
+.++.....+|..+.+|+.+.|..| ++.+...+|.++ +|+.+++.+|.+..++.. |.++ .++..|++..+.+.
T Consensus 309 -~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 309 -ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 3355555566666666666666444 555666677777 777777777777666544 4444 35666666666543
No 380
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=8.1e-18 Score=164.06 Aligned_cols=131 Identities=31% Similarity=0.407 Sum_probs=101.9
Q ss_pred cEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCcc
Q 040845 296 KVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNR 375 (824)
Q Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 375 (824)
+.+++++|.++.+|..+. ++|+.|++++|.++ .+|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 466777777777776543 46777777777776 456777788888888888888887777788888888888888888
Q ss_pred ccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCC
Q 040845 376 LEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 376 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 429 (824)
|++..|..|..+++|+.|+|++|+|++..+..+..+++|+.|++++|+|.|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 887777788888888888888888885555568888888888888888887654
No 381
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.70 E-value=7.6e-16 Score=168.53 Aligned_cols=336 Identities=13% Similarity=0.082 Sum_probs=173.9
Q ss_pred ccccCCcccccCCCCCcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCc
Q 040845 8 FLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSS 87 (824)
Q Consensus 8 ~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 87 (824)
.++++-..+|.++.+|+.+.|.. .++.....+|.++++|+.+++.++ ++.+...+|.++.+|+.+.+..+ +..+...
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 45666667777777777777764 366555667777777777777654 55455567777777777666543 3322222
Q ss_pred cccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccC
Q 040845 88 ITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSL 167 (824)
Q Consensus 88 ~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l 167 (824)
.. .+...++....... .......|.++++|+.+.+..+. ..+...+|.++++|+.+.+..| ++.+.. .++
T Consensus 135 aF-~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~-----~~F 204 (394)
T 4fs7_A 135 AF-KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRD-----YCF 204 (394)
T ss_dssp TT-TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECT-----TTT
T ss_pred ee-ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCc-----hhh
Confidence 21 23332222222222 12334556666666666665443 2255556666666666666544 333322 235
Q ss_pred CCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCC
Q 040845 168 SNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKL 247 (824)
Q Consensus 168 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 247 (824)
.++..|+.+.+..+... + .......++|+.+.+..+ ++.+...+|.++..|
T Consensus 205 ~~~~~L~~i~~~~~~~~-i---------------------------~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 205 AECILLENMEFPNSLYY-L---------------------------GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDL 255 (394)
T ss_dssp TTCTTCCBCCCCTTCCE-E---------------------------CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSC
T ss_pred ccccccceeecCCCceE-e---------------------------ehhhcccCCCceEEECCC-ceecccccccccccc
Confidence 55555555555433221 1 111222344555554432 222333445555555
Q ss_pred CEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCccccccccccccccccc
Q 040845 248 QDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNC 327 (824)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~ 327 (824)
+.+.+..+... .....|.....++.+....+.+ ...+|..+.+|+.+.+.++ ++.
T Consensus 256 ~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~-------------------- 310 (394)
T 4fs7_A 256 ESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKF-------------------- 310 (394)
T ss_dssp CEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCE--------------------
T ss_pred eeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cce--------------------
Confidence 55555444332 3334444444444444443332 2234444555555554322 333
Q ss_pred ccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCccc
Q 040845 328 FSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVS 407 (824)
Q Consensus 328 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 407 (824)
+...+|.++.+|+.++|.++ ++.+...+|.++.+|+.+++..| ++.....+|.+|.+|+.+++..+ ++ .+...
T Consensus 311 ---I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~ 383 (394)
T 4fs7_A 311 ---IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYD 383 (394)
T ss_dssp ---ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGG
T ss_pred ---echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhhe
Confidence 33445555566666655433 44455566666666666666655 54445566666777777766544 33 34455
Q ss_pred ccCCccccee
Q 040845 408 LEKLSYLKDL 417 (824)
Q Consensus 408 ~~~l~~L~~L 417 (824)
|.++++|+.+
T Consensus 384 F~~c~~L~~I 393 (394)
T 4fs7_A 384 FEDTTKFKWI 393 (394)
T ss_dssp BCTTCEEEEE
T ss_pred ecCCCCCcEE
Confidence 6666666654
No 382
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=8.8e-16 Score=167.12 Aligned_cols=265 Identities=10% Similarity=0.090 Sum_probs=154.1
Q ss_pred CCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCC
Q 040845 93 LPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKS 172 (824)
Q Consensus 93 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~ 172 (824)
+..++.+.+.++ ++.+...+|.+. +|+.+.|..| ++.+...+|.+ .+|+.+.+.. .++.++. .+|.++++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~-----~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKE-----DIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECS-----STTTTCTT
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehH-----HHhhCccc
Confidence 345666666543 444555566653 5777777655 55566667766 3577777764 4554443 34667777
Q ss_pred CcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEc
Q 040845 173 LTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDL 252 (824)
Q Consensus 173 L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 252 (824)
|+.++++.|.+..+....|.. .+|+.+.+.++ +..+...+|.++++|+.+++..| ++.+...+|.+ .
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~---~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~------- 248 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVY---AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-S------- 248 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTT---CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-C-------
T ss_pred CCeeecCCCcceEechhhEee---cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-C-------
Confidence 777777777766665555531 34455554422 44344444455555555555442 33333344444 3
Q ss_pred ccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCC-----CCCC-cccccccccccccccc
Q 040845 253 EYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELT-----SIPL-NFWSLKDILDLNLSSN 326 (824)
Q Consensus 253 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~-~~~~l~~L~~L~l~~N 326 (824)
+|+.+.+ .+.++.+...+|.++++|+.+++.+|.+. .++. .|.++++|+.+++. +
T Consensus 249 -----------------~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~ 309 (401)
T 4fdw_A 249 -----------------GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E 309 (401)
T ss_dssp -----------------CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-T
T ss_pred -----------------CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-C
Confidence 4555555 23344344555555555555555555443 3333 25555666666666 3
Q ss_pred cccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccc-cccEEEccCcccC
Q 040845 327 CFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLI-SLKSLNLSYNNLS 401 (824)
Q Consensus 327 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 401 (824)
.++.+...+|.+|++|+.++|..| ++.+.+.+|.++ +|+.|++++|.+....+..|.+++ +++.|.+..|.+.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 355455667777777777777544 665667778888 888888888877766667777774 6778888777653
No 383
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=2e-16 Score=152.28 Aligned_cols=134 Identities=25% Similarity=0.274 Sum_probs=105.8
Q ss_pred CcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCc
Q 040845 295 LKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYN 374 (824)
Q Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 374 (824)
.+.+++++|+++.+|..+. ++|+.|++++|.+++..+..|.++++|+.|++++|++++..+..|..+++|+.|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4567777777777775543 56777777777777666667788888888888888888777777888889999999999
Q ss_pred cccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 375 RLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
+|++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 98876666788888999999999998865555678888899999999998887764
No 384
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.65 E-value=7.7e-17 Score=170.71 Aligned_cols=138 Identities=14% Similarity=0.149 Sum_probs=100.0
Q ss_pred cCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccc--------------hhh--------hHHHHHHHHhcCCCCcc
Q 040845 528 KFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGR--------------AFK--------SFDVECAMMKSIRHRNL 585 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~--------------~~~--------~~~~E~~~l~~l~h~ni 585 (824)
-|++.+.||+|++|.||+|...+|+.||||+++..... ... ...+|...|.++.+.++
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999888999999987532100 001 12345666666644433
Q ss_pred eeEEeeeecCCeeEEEEeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCC-
Q 040845 586 VKVISSCSNEEFKALVLEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNM- 664 (824)
Q Consensus 586 v~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~- 664 (824)
....-+... ..++||||++|++|.++... .....++.|++.++.||| ..+||||||||.|||+++++
T Consensus 176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~~~-------~~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd 243 (397)
T 4gyi_A 176 PVPEPIAQS--RHTIVMSLVDALPMRQVSSV-------PDPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKD 243 (397)
T ss_dssp SCCCEEEEE--TTEEEEECCSCEEGGGCCCC-------SCHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEEC
T ss_pred CCCeeeecc--CceEEEEecCCccHhhhccc-------HHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCC
Confidence 211111111 23699999999888665421 134568899999999999 89999999999999998776
Q ss_pred ---------cEEEeeccccccc
Q 040845 665 ---------VAHLSDFGIAKLL 677 (824)
Q Consensus 665 ---------~~kl~Dfg~a~~~ 677 (824)
.+.|+||+.+...
T Consensus 244 ~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 244 AEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp SSCTTSEEEEEEECCCTTCEET
T ss_pred cccccccccceEEEEeCCcccC
Confidence 3899999988754
No 385
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=4.2e-15 Score=162.58 Aligned_cols=318 Identities=14% Similarity=0.082 Sum_probs=201.6
Q ss_pred CCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCc
Q 040845 57 LLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPS 136 (824)
Q Consensus 57 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~ 136 (824)
++.+...+|.++.+|+.+.+.. .++.+... .+.++++|+.++|..+ ++.+....|.++++|+.+.+..+ +..+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEF-AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchh-HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 3334445566666666666643 24433332 2235566666666543 44344556666666666665543 3335555
Q ss_pred cccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCcc
Q 040845 137 TFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEE 216 (824)
Q Consensus 137 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~ 216 (824)
+|.+...++....... ..+.. .+|.++++|+.+.+.++. .. .....
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~-----~aF~~c~~L~~i~l~~~~-~~--------------------------I~~~~ 180 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGD-----EAFATCESLEYVSLPDSM-ET--------------------------LHNGL 180 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECT-----TTTTTCTTCCEEECCTTC-CE--------------------------ECTTT
T ss_pred eeecccccccccCccc--cccch-----hhhcccCCCcEEecCCcc-ce--------------------------ecccc
Confidence 6666544333322221 11111 346666777777665432 11 22345
Q ss_pred CCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCc
Q 040845 217 ITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLK 296 (824)
Q Consensus 217 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 296 (824)
|.++++|+.+.+..+ ++.+...+|.++..|+.+.+..+... +.+.+....+|+.+.+..+ +......+|.++.+|+
T Consensus 181 F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCC
T ss_pred ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccce
Confidence 666777777777655 44455567777777777776665443 2233334456777777644 3335566777888888
Q ss_pred EEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccc
Q 040845 297 VLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRL 376 (824)
Q Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 376 (824)
.+.+..+..+--...|.....++.+....+.+. ...|..+.+|+.+.+.++ ++.+...+|.++.+|+.++|..+ +
T Consensus 257 ~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 257 SISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp EEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred eEEcCCCcceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence 888877654433444666777777777665543 457888999999999765 66677889999999999999755 7
Q ss_pred cccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCC
Q 040845 377 EGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFN 422 (824)
Q Consensus 377 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N 422 (824)
+.....+|.+|.+|+.+++..| ++..-..+|.++++|+.+++..+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6566789999999999999887 77566778999999999999754
No 386
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.4e-16 Score=151.98 Aligned_cols=111 Identities=24% Similarity=0.198 Sum_probs=44.3
Q ss_pred cCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCC-CccCCCCCCCe
Q 040845 290 SNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIP-MEIGSLKNLEN 368 (824)
Q Consensus 290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~ 368 (824)
..+++|++|++++|.++.+ ..+..+++|+.|++++|.+++.+|..+.++++|+.|++++|++++..+ ..+..+++|+.
T Consensus 46 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 3333333333333333333 223333333333333333332233333334444444444444443211 33444444444
Q ss_pred EEccCccccccCC---ccccccccccEEEccCcccC
Q 040845 369 LFLEYNRLEGSIP---DSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 369 L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~ 401 (824)
|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 4444444443222 24444444444444444443
No 387
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.6e-16 Score=149.95 Aligned_cols=134 Identities=20% Similarity=0.133 Sum_probs=119.9
Q ss_pred CCCCcEEEcCCCCCC--CCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeE
Q 040845 292 MTFLKVLSLGSNELT--SIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENL 369 (824)
Q Consensus 292 l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 369 (824)
.++|++|++++|.++ .+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999999 8998889999999999999999965 789999999999999999998788888889999999
Q ss_pred EccCccccccC-CccccccccccEEEccCcccCCCCc---ccccCCcccceeeccCCcccCC
Q 040845 370 FLEYNRLEGSI-PDSFGDLISLKSLNLSYNNLSGTIP---VSLEKLSYLKDLNLSFNKLKGE 427 (824)
Q Consensus 370 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~l~~N~l~~~ 427 (824)
+|++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999642 2789999999999999999995544 4889999999999999998743
No 388
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=149.89 Aligned_cols=128 Identities=24% Similarity=0.274 Sum_probs=107.9
Q ss_pred cEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhccccc
Q 040845 272 YELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNN 351 (824)
Q Consensus 272 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 351 (824)
+.+++++|+++. +|..+. ++|++|++++|.|+.+|..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|+
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 466777777763 343332 57888888888888888778888888888888888888778889999999999999999
Q ss_pred ccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCC
Q 040845 352 FSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSG 402 (824)
Q Consensus 352 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 402 (824)
|++..+..|..+++|+.|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 998888899999999999999999997666789999999999999999973
No 389
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=5.3e-16 Score=144.59 Aligned_cols=128 Identities=26% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCCCcEEEccCCccc-ccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccE
Q 040845 20 ISNLKVLYLYNNRLQ-GEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEV 98 (824)
Q Consensus 20 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 98 (824)
.++|++|++++|+++ +.+|..++.+++|++|++++|.+++. ..+..+++|++|++++|++++..+... ..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCE
Confidence 466777777777777 56676777777777777777777744 556666666666666666665222111 12556666
Q ss_pred EEccCCeeeee-cCccccCCCCCceEeccCccccccCC---ccccCCCCCCEEEcc
Q 040845 99 LYLWGNNFSGT-IPHFIFNASKLSKLALEMNSFSGFIP---STFGNLRNLEWLTLY 150 (824)
Q Consensus 99 L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~ 150 (824)
|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666665542 22455555555555555555554433 345555555555554
No 390
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=4.6e-16 Score=144.98 Aligned_cols=126 Identities=25% Similarity=0.247 Sum_probs=54.8
Q ss_pred CccEEEccCcccc-ccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcc
Q 040845 270 ELYELELGGNKLS-GSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFS 348 (824)
Q Consensus 270 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 348 (824)
+|+.|++++|.++ +.+|..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3444444444444 33444445555555555555555544 233334444444444444443333333334444444444
Q ss_pred ccccccc-CCCccCCCCCCCeEEccCccccccCC---ccccccccccEEEcc
Q 040845 349 MNNFSGI-IPMEIGSLKNLENLFLEYNRLEGSIP---DSFGDLISLKSLNLS 396 (824)
Q Consensus 349 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~ 396 (824)
+|++++. .+..++.+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444432 12334444444444444444443222 234444444444443
No 391
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=7.9e-16 Score=147.78 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=86.9
Q ss_pred CCcccccccccCCcccccCCCCCcEEEccCCcccccccccccCCC-CCCEEeCCCCcCCcccChhhhCcCCCceeeccCC
Q 040845 1 MPSIINNFLTSTTPKEIDNISNLKVLYLYNNRLQGEIIHEIGHLH-NLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNN 79 (824)
Q Consensus 1 ~~~l~~n~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 79 (824)
|+.+..+.|... ..+..+++|++|+|++|+++. ++. +..+. +|++|+|++|.+++. ..+..+++|++|+|++|
T Consensus 1 m~~lt~~~i~~~--~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 1 MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp -CCCCHHHHHTS--CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS
T ss_pred CccccHHHHHHH--HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC
Confidence 566666666653 236777888888888888883 443 54444 888888888888743 45666666666666666
Q ss_pred ccccccCccccCCCCCccEEEccCCeeeeecCc--cccCCCCCceEeccCccccccCCc----cccCCCCCCEEEccCCc
Q 040845 80 SLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPH--FIFNASKLSKLALEMNSFSGFIPS----TFGNLRNLEWLTLYDNN 153 (824)
Q Consensus 80 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~l~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~n~ 153 (824)
++++++.... ..+++|++|+|++|+|+ .+|. .+..+++|+.|++++|.++.. |. .+..+++|++|++++|.
T Consensus 75 ~l~~~~~~~~-~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 75 RICRIGEGLD-QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCEECSCHH-HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred cccccCcchh-hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCC
Confidence 6665554331 13566666666666664 3333 455555566666666655532 33 25555555555555554
Q ss_pred C
Q 040845 154 L 154 (824)
Q Consensus 154 i 154 (824)
+
T Consensus 152 ~ 152 (176)
T 1a9n_A 152 L 152 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 392
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=139.58 Aligned_cols=131 Identities=22% Similarity=0.216 Sum_probs=69.1
Q ss_pred CcEEEccCCcccccccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEcc
Q 040845 23 LKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLW 102 (824)
Q Consensus 23 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 102 (824)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|+++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------ 67 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL------------------ 67 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC------------------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe------------------
Confidence 355666666666 334333 24666666666666644444455555555555555555443
Q ss_pred CCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCC
Q 040845 103 GNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNP 182 (824)
Q Consensus 103 ~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 182 (824)
.+..|..+++|++|+|++|++++..+..|.++++|++|++++|+++.++.. .+..+++|++|+|++|+
T Consensus 68 -------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 68 -------PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-----IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-----TTTTCTTCCEEECCSSC
T ss_pred -------ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH-----HhcCCcccCEEEecCCC
Confidence 333444555555555555555544444455555555555555555544321 24455555666666665
Q ss_pred CCcc
Q 040845 183 LDGI 186 (824)
Q Consensus 183 l~~~ 186 (824)
+.+.
T Consensus 136 ~~~~ 139 (177)
T 2o6r_A 136 WDCS 139 (177)
T ss_dssp BCCC
T ss_pred eecc
Confidence 5543
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1e-15 Score=147.05 Aligned_cols=132 Identities=20% Similarity=0.166 Sum_probs=89.4
Q ss_pred ccCCCCCcEEEcCCCCCCCCCCcccccc-cccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCC
Q 040845 289 FSNMTFLKVLSLGSNELTSIPLNFWSLK-DILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLE 367 (824)
Q Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 367 (824)
+.++++|+.|++++|.++.+|. +..+. +|+.|++++|.+++. ..+..+++|+.|++++|+|++..+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455566666666666666643 33333 666666666666643 4666777777777777777765545557777788
Q ss_pred eEEccCccccccCCc--cccccccccEEEccCcccCCCCccc----ccCCcccceeeccCCccc
Q 040845 368 NLFLEYNRLEGSIPD--SFGDLISLKSLNLSYNNLSGTIPVS----LEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 368 ~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 425 (824)
.|+|++|+|+ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888776 4554 6777778888888888877 55654 777778888888777654
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=5.5e-17 Score=159.23 Aligned_cols=134 Identities=25% Similarity=0.286 Sum_probs=66.2
Q ss_pred hcCCCCCCEEEcccccCcccCCc------cccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCcccc
Q 040845 241 LGKLQKLQDVDLEYNQLEGSIPD------SICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLNFWS 314 (824)
Q Consensus 241 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~ 314 (824)
+.....++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 44455566666666666554443 45555555555555555553 23 455555555555555555555544444
Q ss_pred cccccccccccccccCcCCccccccccchhhhcccccccccCC-CccCCCCCCCeEEccCccccc
Q 040845 315 LKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIP-MEIGSLKNLENLFLEYNRLEG 378 (824)
Q Consensus 315 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 378 (824)
+++|+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+++
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 4555555555555543 22 34444444444444444443211 234444444444444444443
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=5.1e-17 Score=159.49 Aligned_cols=155 Identities=23% Similarity=0.258 Sum_probs=123.5
Q ss_pred ccccCCccEEEccCccccccCCc------cccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccc
Q 040845 265 ICLSVELYELELGGNKLSGSIPA------CFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRN 338 (824)
Q Consensus 265 ~~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 338 (824)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.++.+| .+..+++|+.|++++|.++ .+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 45566778888888888877766 7888899999999999999988 7888889999999999988 56777777
Q ss_pred cccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCC-ccccccccccEEEccCcccCCCCccc----------
Q 040845 339 LKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIP-DSFGDLISLKSLNLSYNNLSGTIPVS---------- 407 (824)
Q Consensus 339 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~---------- 407 (824)
+++|+.|++++|++++. | .+..+++|+.|++++|++++..+ ..+..+++|+.|++++|++++..|..
T Consensus 92 ~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 88889999999988863 4 57888889999999998885322 46788888899999998887665542
Q ss_pred ccCCcccceeeccCCccc
Q 040845 408 LEKLSYLKDLNLSFNKLK 425 (824)
Q Consensus 408 ~~~l~~L~~L~l~~N~l~ 425 (824)
+..+++|+.|+ +|+++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67788888776 66665
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=1.6e-12 Score=141.98 Aligned_cols=336 Identities=12% Similarity=0.091 Sum_probs=201.4
Q ss_pred ccccCCcccccCCC-CCcEEEccCCcccccccccccCCCCCCEEeCCCCc---CCcccChhhhCcCCCceeeccCCcccc
Q 040845 8 FLTSTTPKEIDNIS-NLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNK---LLGTIPAAIFNVSTLKAFAVTNNSLSG 83 (824)
Q Consensus 8 ~i~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~ 83 (824)
.++++-..+|.+.+ .|+.+.+..+ ++.....+|.++++|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++.
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 35667777888875 5999999754 666677889999999999998774 66566778989999998888765 444
Q ss_pred ccCccccCCCCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccc
Q 040845 84 CLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSF 163 (824)
Q Consensus 84 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 163 (824)
+.... +.++.+|+.+.+..+- +......|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-. .+..
T Consensus 128 I~~~a-F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~---- 198 (394)
T 4gt6_A 128 IDSEA-FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGT---- 198 (394)
T ss_dssp ECTTT-TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECT----
T ss_pred ehhhh-hhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-cccc----
Confidence 44433 3468899999997554 4466778888999999998765 55466777765 6788888865432 2221
Q ss_pred cccCCCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcC
Q 040845 164 LSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGK 243 (824)
Q Consensus 164 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 243 (824)
.++..+.+|+......+.........+........ ....+.....+..+.+.. .++.+...+|.+
T Consensus 199 -~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~ 263 (394)
T 4gt6_A 199 -NAFSECFALSTITSDSESYPAIDNVLYEKSANGDY-------------ALIRYPSQREDPAFKIPN-GVARIETHAFDS 263 (394)
T ss_dssp -TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE-------------EEEECCTTCCCSEEECCT-TEEEECTTTTTT
T ss_pred -chhhhccccceecccccccccccceeecccccccc-------------cccccccccccceEEcCC-cceEcccceeee
Confidence 45788888888887776655443322211100000 000111223333333322 222234445555
Q ss_pred CCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCCc-ccccccccccc
Q 040845 244 LQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPLN-FWSLKDILDLN 322 (824)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~ 322 (824)
+.+|+.+.+..+... ....+|..+.+|+.+.+. +.+..+...+|.++++|+.+.|..+ ++.|+.. |.++.+|+.+.
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 666666665544332 444555555666666664 3344455566666666666666543 5555433 55566666666
Q ss_pred cccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccc
Q 040845 323 LSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRL 376 (824)
Q Consensus 323 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 376 (824)
+..+ ++.+...+|.+|++|+.+++.+|.... ..+..+.+|+.+.+..|.+
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 6543 444556677777777777777765431 3466667777777766654
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=4e-14 Score=134.71 Aligned_cols=109 Identities=22% Similarity=0.207 Sum_probs=58.8
Q ss_pred CcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCc
Q 040845 295 LKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYN 374 (824)
Q Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 374 (824)
.+.+++++|.++.+|..+. ++|+.|+|++|.++ +..|..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQIT------------------------KLEPGVFDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCC------------------------CCCTTTTTTCTTCSEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCC------------------------ccChhhhcCcccCCEEECCCC
Confidence 4677777777777775442 44555555555554 444444555555555555555
Q ss_pred cccccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCCCC
Q 040845 375 RLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIP 429 (824)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p 429 (824)
+|++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|+|++|+|+|.++
T Consensus 65 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 65 QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 5554444444555555555555555554334445555555555555555555444
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=7.4e-14 Score=132.88 Aligned_cols=105 Identities=25% Similarity=0.289 Sum_probs=73.0
Q ss_pred CccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC-cccccccccccccccccccCcCCccccccccchhhhcc
Q 040845 270 ELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL-NFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFS 348 (824)
Q Consensus 270 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 348 (824)
+.+.+++++|+++. +|..+ .++|++|+|++|+|+.++. .|..++ +|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~------------------------~L~~L~Ls 62 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT------------------------QLTRLDLD 62 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT------------------------TCSEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcc------------------------cCCEEECC
Confidence 35789999999995 55544 3789999999999999853 344444 45555555
Q ss_pred cccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccC
Q 040845 349 MNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 349 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
+|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++
T Consensus 63 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 63 NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55555555555666677777777777777555556777777777777777776
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=6.5e-14 Score=133.74 Aligned_cols=104 Identities=24% Similarity=0.253 Sum_probs=58.1
Q ss_pred cEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCcc
Q 040845 296 KVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNR 375 (824)
Q Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 375 (824)
+.+++++|+++++|..+. ++|+.|+|++|.+++..|..|.++++|+.|+|++|+|+++.+..|..+++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776543 555555555555555445555555555555555555554444444555555555555555
Q ss_pred ccccCCccccccccccEEEccCcccC
Q 040845 376 LEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 376 l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
|++..+..|..+++|+.|+|++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55433334555555555555555554
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=9.7e-14 Score=132.50 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=97.8
Q ss_pred ccccccccccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccC
Q 040845 318 ILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSY 397 (824)
Q Consensus 318 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 397 (824)
-+.+++++|.++ .+|..+. ++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367899999997 5666654 8899999999999998899999999999999999999976667789999999999999
Q ss_pred cccCCCCcccccCCcccceeeccCCcccCCCCC
Q 040845 398 NNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPR 430 (824)
Q Consensus 398 N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~ 430 (824)
|+|++..+..+..+++|+.|+|++|+|.+.++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 999966666699999999999999999988764
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=6.6e-12 Score=137.16 Aligned_cols=302 Identities=14% Similarity=0.152 Sum_probs=156.7
Q ss_pred CCCCccEEEccCCe---eeeecCccccCCCCCceEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCC
Q 040845 92 GLPNLEVLYLWGNN---FSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLS 168 (824)
Q Consensus 92 ~l~~L~~L~L~~n~---i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~ 168 (824)
++.+|+.+.+..|. ++.+...+|..+.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.++. .+|.
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~-----~~F~ 157 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVAD-----GMFS 157 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecc-----ccee
Confidence 34444444444332 33344555666666666666544 44455666777777777777543 333322 2466
Q ss_pred CCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCC
Q 040845 169 NCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQ 248 (824)
Q Consensus 169 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 248 (824)
.+.+|+.+.+..+ +..+...+|.+ ..|+.+.+..+- ......+|.++.+++......+.........+.......
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGD 232 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSC
T ss_pred cccccccccccce-eeEeccccccc---cceeEEEECCcc-cccccchhhhccccceecccccccccccceeeccccccc
Confidence 6777777777543 44454444432 235555554332 224445666677777666655544321111111111100
Q ss_pred EEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCCCcEEEcCCCCCCCCCC-ccccccccccccccccc
Q 040845 249 DVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTFLKVLSLGSNELTSIPL-NFWSLKDILDLNLSSNC 327 (824)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~l~~N~ 327 (824)
.-.. .+.....+..+.+. +.+......+|.++.+|+.+.+.++.. .++. .|..++.|+.+.+. +.
T Consensus 233 ~~~~-----------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~ 298 (394)
T 4gt6_A 233 YALI-----------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SR 298 (394)
T ss_dssp EEEE-----------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TT
T ss_pred cccc-----------ccccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-Cc
Confidence 0000 01111223333332 223334556677777777777654433 3332 35556666666664 33
Q ss_pred ccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCccc
Q 040845 328 FSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVS 407 (824)
Q Consensus 328 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 407 (824)
++.+....|.++.+|+.++|.++ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+++.+|... -..
T Consensus 299 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~ 373 (394)
T 4gt6_A 299 ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNA 373 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHT
T ss_pred ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhh
Confidence 44455667777777777777654 55566677777778888877544 55455667777888888887776543 134
Q ss_pred ccCCcccceeeccCCcc
Q 040845 408 LEKLSYLKDLNLSFNKL 424 (824)
Q Consensus 408 ~~~l~~L~~L~l~~N~l 424 (824)
+..+.+|+.+.+..|.+
T Consensus 374 ~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CBCCCCC----------
T ss_pred hhccCCCCEEEeCCCCE
Confidence 55666777776665544
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=2.8e-15 Score=161.49 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=84.4
Q ss_pred CCCcEEEccCCcccccccccccCC-----CCCCEEeCCCCcCCcccChhhh-CcCCCceeeccCCccccccCcccc----
Q 040845 21 SNLKVLYLYNNRLQGEIIHEIGHL-----HNLGFLDLSQNKLLGTIPAAIF-NVSTLKAFAVTNNSLSGCLSSITD---- 90 (824)
Q Consensus 21 ~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~---- 90 (824)
++|++|+|++|.|+......|..+ ++|++|||++|.++......+. .+++|++|+|++|+++........
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666664433333322 5666666666666533222222 345666666666666532211110
Q ss_pred CCCCCccEEEccCCeeeee----cCccccCCCCCceEeccCccccccC----CccccCCCCCCEEEccCCcCCCCcCccc
Q 040845 91 VGLPNLEVLYLWGNNFSGT----IPHFIFNASKLSKLALEMNSFSGFI----PSTFGNLRNLEWLTLYDNNLTSSTLDLS 162 (824)
Q Consensus 91 ~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 162 (824)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.. ...+...++|++|+|++|.|+..... .
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~-~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL-A 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH-H
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH-H
Confidence 1235566666666666432 2333455566666666666665422 33445555666666666666543221 1
Q ss_pred ccccCCCCCCCcEEECcCCCCCcc
Q 040845 163 FLSSLSNCKSLTHISLSNNPLDGI 186 (824)
Q Consensus 163 ~~~~l~~l~~L~~L~Ls~n~l~~~ 186 (824)
+...+..+++|++|+|++|.|.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 223344455666666666665543
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=3.8e-15 Score=160.55 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=60.3
Q ss_pred CCCceEeccCccccccCCccc-----cCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCcccc
Q 040845 118 SKLSKLALEMNSFSGFIPSTF-----GNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYV 192 (824)
Q Consensus 118 ~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 192 (824)
++|++|+|++|.+++.....+ ...++|++|+|++|.|+..... .+...+..+++|++|+|++|.|.+.....
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~-- 202 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA-VLMEGLAGNTSVTHLSLLHTGLGDEGLEL-- 202 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH-HHHHHHHTCSSCCEEECTTSSCHHHHHHH--
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH-HHHHHHhcCCCcCEEeCCCCCCCcHHHHH--
Confidence 345555555555543322222 1235566666666655442211 12233445566666666666654321111
Q ss_pred ccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCc----cchhhcCCCCCCEEEcccccCcccCCcccc
Q 040845 193 GNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGS----IPITLGKLQKLQDVDLEYNQLEGSIPDSIC 266 (824)
Q Consensus 193 ~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 266 (824)
++..+..+++|++|+|++|.|+.. +...+...++|++|+|++|.|+......++
T Consensus 203 --------------------L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 203 --------------------LAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp --------------------HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred --------------------HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 112333445566666666666532 223344456666666666666644444443
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=2.3e-12 Score=138.41 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=67.4
Q ss_pred EEEcCCC-CCCCCCCccccccccccccccc-ccccCcCCccccccccchhhhcccccccccCCCccCCCCCCCeEEccCc
Q 040845 297 VLSLGSN-ELTSIPLNFWSLKDILDLNLSS-NCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIGSLKNLENLFLEYN 374 (824)
Q Consensus 297 ~L~L~~N-~l~~lp~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L~~N 374 (824)
.++++++ +|+.+|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566665 6666666 65566666666664 6666555566666777777777777777666666777777777777777
Q ss_pred cccccCCccccccccccEEEccCcccC
Q 040845 375 RLEGSIPDSFGDLISLKSLNLSYNNLS 401 (824)
Q Consensus 375 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 401 (824)
+|++..+..|..++ |+.|+|++|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 77654445555544 777777777765
No 405
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.29 E-value=9.3e-12 Score=127.85 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=115.8
Q ss_pred HHhhccCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeeecCCeeEEE
Q 040845 523 FQATDKFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCSNEEFKALV 601 (824)
Q Consensus 523 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 601 (824)
......|.+....+.|+.+.||++... ++.+++|+...........+.+|+.+++.+. +..+.++++++.+.+..|+|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 445567888888898999999999865 7899999986533233457899999999985 67788999999888899999
Q ss_pred EeccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------
Q 040845 602 LEYMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFG-------------------------------------- 643 (824)
Q Consensus 602 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------------------------------------- 643 (824)
|||++|.++.+.+.. ......++.+++++++.||..
T Consensus 89 ~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (263)
T 3tm0_A 89 MSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT 162 (263)
T ss_dssp EECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred EEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence 999999999876421 112346889999999999941
Q ss_pred ------------------CCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 644 ------------------YSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 644 ------------------~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
....++|+|++|.||+++++..+.|+||+.+.
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01458999999999999876666799999775
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.29 E-value=3.6e-10 Score=122.71 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=55.9
Q ss_pred ccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccccccCCccccCCCC
Q 040845 215 EEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKLSGSIPACFSNMTF 294 (824)
Q Consensus 215 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 294 (824)
..+..+.+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++......|..+.+|+.+.+..+ +......+|.++++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33444455555554433 22233444555555555555443 33333444444445555554332 33334444555555
Q ss_pred CcEEEcCCCCCCCCCCc-ccccccccccccccccccCcCCccccccccchhhhc
Q 040845 295 LKVLSLGSNELTSIPLN-FWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDF 347 (824)
Q Consensus 295 L~~L~L~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 347 (824)
|+.+.+.++.++.|+.. |.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 55555544444444332 333444444444322 22233333444444444444
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=2.1e-12 Score=138.65 Aligned_cols=132 Identities=22% Similarity=0.237 Sum_probs=106.5
Q ss_pred cccccccc-cccCcCCccccccccchhhhccc-ccccccCCCccCCCCCCCeEEccCccccccCCccccccccccEEEcc
Q 040845 319 LDLNLSSN-CFSGPLPLEIRNLKALIEIDFSM-NNFSGIIPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLS 396 (824)
Q Consensus 319 ~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 396 (824)
..++++++ .++. +|. +..+++|+.|+|++ |+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 8984 677 99999999999996 99998888999999999999999999999889999999999999999
Q ss_pred CcccCCCCcccccCCcccceeeccCCcccCCCCCCC--CccccccccccCCccccCCCC
Q 040845 397 YNNLSGTIPVSLEKLSYLKDLNLSFNKLKGEIPRGG--SFGNFSAESFKGNELLCGSPN 453 (824)
Q Consensus 397 ~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~~ 453 (824)
+|+|++..+..+..++ |+.|+|.+|+|.|.+.-.. .+.......+..+...|..|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 9999966666666665 9999999999998765211 111112233455667777654
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.22 E-value=5.1e-10 Score=121.53 Aligned_cols=313 Identities=10% Similarity=0.036 Sum_probs=148.0
Q ss_pred cCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccCCccccccCccccCCCCCccEEEccCCeeeeecCccccCCCCCc
Q 040845 42 GHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTNNSLSGCLSSITDVGLPNLEVLYLWGNNFSGTIPHFIFNASKLS 121 (824)
Q Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 121 (824)
....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+....+ .++ +|+.+.+..+ ++......|.. .+|+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF-~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAF-ADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTT-TTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhh-cCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 3344555555543 233344445555555555555432 333333222 222 3444444332 33233333333 3566
Q ss_pred eEeccCccccccCCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCccccccccccccE
Q 040845 122 KLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKN 201 (824)
Q Consensus 122 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~ 201 (824)
.+.+..+ +..+...+|.+. +|+.+.+..+ ++.+.. .++..+.+++.+.+..+.........+..
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~-----~~f~~~~~l~~~~~~~~~~~~~~~~~~~~-------- 180 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKD-----GIGYKAENLEKIEVSSNNKNYVAENYVLY-------- 180 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECS-----CTTTTCTTCCEEEECTTCSSEEEETTEEE--------
T ss_pred cccCCCc-cccccccccccc-eeeeeeccce-eecccc-----chhcccccccccccccccceeecccceec--------
Confidence 6666544 222444455443 4555444332 222221 23555666666665554432211110000
Q ss_pred EEeecCcceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccccCcccCCccccccCCccEEEccCccc
Q 040845 202 FYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNKL 281 (824)
Q Consensus 202 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 281 (824)
..+ ......+.....+..+.+....-. ....++....+|+.+.+..+ +.......+..+..|+.+.+..+ +
T Consensus 181 ---~~~---~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v 251 (379)
T 4h09_A 181 ---NKN---KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-V 251 (379)
T ss_dssp ---ETT---SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-C
T ss_pred ---ccc---cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-c
Confidence 000 011123444555555555443322 34455666667777666544 33244455555666666666554 4
Q ss_pred cccCCccccCCCCCcEEEcCCCCCCCCCCcccccccccccccccccccCcCCccccccccchhhhcccccccccCCCccC
Q 040845 282 SGSIPACFSNMTFLKVLSLGSNELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEIRNLKALIEIDFSMNNFSGIIPMEIG 361 (824)
Q Consensus 282 ~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 361 (824)
+.+...+|.++.+|+.+.+.. .++.+ ....|.++.+|+.+.+.++.++.+...+|.
T Consensus 252 ~~I~~~aF~~~~~l~~i~l~~-~i~~i-----------------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~ 307 (379)
T 4h09_A 252 TSIGSFLLQNCTALKTLNFYA-KVKTV-----------------------PYLLCSGCSNLTKVVMDNSAIETLEPRVFM 307 (379)
T ss_dssp CEECTTTTTTCTTCCEEEECC-CCSEE-----------------------CTTTTTTCTTCCEEEECCTTCCEECTTTTT
T ss_pred cEeCccccceeehhccccccc-cceec-----------------------cccccccccccccccccccccceehhhhhc
Confidence 444555566666666665532 23333 334455555666666655555555555666
Q ss_pred CCCCCCeEEccCccccccCCccccccccccEEEccCcccCCCCcccccCC
Q 040845 362 SLKNLENLFLEYNRLEGSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKL 411 (824)
Q Consensus 362 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 411 (824)
++.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+ ++..-..+|.++
T Consensus 308 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 308 DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 6666666666443 44344456666666666666543 442333444444
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.14 E-value=6.1e-11 Score=121.62 Aligned_cols=136 Identities=16% Similarity=0.105 Sum_probs=101.2
Q ss_pred cCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc--ceeEEeeeecCCeeEEEEecc
Q 040845 528 KFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN--LVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~ 605 (824)
.|.+..+.+.|..+.||++...+|+.+++|+.... ....+..|+.+++.+++.+ +.+++++...++..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 44443333455669999998777888999987543 3456888999999986544 566888888878889999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC-----------------------------------------
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY----------------------------------------- 644 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~----------------------------------------- 644 (824)
+|.++. .. ..+ ...++.++++.++.||...
T Consensus 98 ~G~~l~--~~----~~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (264)
T 1nd4_A 98 PGQDLL--SS----HLA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA 168 (264)
T ss_dssp SSEETT--TS----CCC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred CCcccC--cC----cCC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHH
Confidence 998884 21 112 2357788888899998321
Q ss_pred --------------CCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 645 --------------SAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 645 --------------~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
...++|+|++|.||++++++.+.|+|||.+.
T Consensus 169 ~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 169 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1129999999999999877667799999875
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.94 E-value=1.7e-09 Score=116.42 Aligned_cols=141 Identities=13% Similarity=0.173 Sum_probs=106.1
Q ss_pred CceeeeccceEEEEEEECCCcEEEEEEee--ccc-cchhhhHHHHHHHHhcCC--CCcceeEEeeeecC---CeeEEEEe
Q 040845 532 NNLIGRGGFGSVYKARIRDGMEVAVKVFN--LQC-GRAFKSFDVECAMMKSIR--HRNLVKVISSCSNE---EFKALVLE 603 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~e 603 (824)
.+.++.|.++.||+++.. +..+++|+.. ... ......+.+|+.+++.+. +..+.++++++.+. +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 467899999999999876 4678888765 321 123457888999999997 45578899888766 45889999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC---------------------------------------
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY--------------------------------------- 644 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------- 644 (824)
|++|..+.+.. ...++..++..++.++++.|+.||...
T Consensus 122 ~v~G~~l~~~~---~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (359)
T 3dxp_A 122 FVSGRVLWDQS---LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMD 198 (359)
T ss_dssp CCCCBCCCCTT---CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred ecCCeecCCCc---cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHH
Confidence 99987774321 124678888899999999999999410
Q ss_pred ----------------CCCeEecCCCCCCeeeCCCCc--EEEeecccccc
Q 040845 645 ----------------SAPVIHCDLKPSNVLLDDNMV--AHLSDFGIAKL 676 (824)
Q Consensus 645 ----------------~~~ivH~Dlk~~Nill~~~~~--~kl~Dfg~a~~ 676 (824)
...++|+|+++.||+++.++. +.++||+.+..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 199 SLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999998864
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=3.3e-10 Score=120.69 Aligned_cols=160 Identities=17% Similarity=0.281 Sum_probs=80.0
Q ss_pred CCCccEEEccCCeeeeecCccccCCCCCceEeccCccccccCCcccc--CCCCCCEEEccC--CcC-CCCcCcccccccC
Q 040845 93 LPNLEVLYLWGNNFSGTIPHFIFNASKLSKLALEMNSFSGFIPSTFG--NLRNLEWLTLYD--NNL-TSSTLDLSFLSSL 167 (824)
Q Consensus 93 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~--n~i-~~~~~~~~~~~~l 167 (824)
+|+|+.|+|++|.-. .++. + .+++|++|+|..|.++......++ .+++|+.|+|+. |.. ...... .....+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~-~l~~~l 246 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN-VFRPLF 246 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG-GTGGGS
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH-HHHHHH
Confidence 456666666655211 1222 2 256666666666665543333333 567777777643 111 110000 000112
Q ss_pred --CCCCCCcEEECcCCCCCccCCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCCccCCccch----hh
Q 040845 168 --SNCKSLTHISLSNNPLDGILPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGNKLNGSIPI----TL 241 (824)
Q Consensus 168 --~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~ 241 (824)
..+++|++|+|++|.+.+..+..+.. ...+++|++|+|+.|.+.+.... .+
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~-----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L 303 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLE-----------------------SDILPQLETMDISAGVLTDEGARLLLDHV 303 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHH-----------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHh-----------------------CccCCCCCEEECCCCCCChHHHHHHHhhc
Confidence 34678888888888775432111110 01246677777777776643222 23
Q ss_pred cCCCCCCEEEcccccCcccCCccccccCCccEEEccCcc
Q 040845 242 GKLQKLQDVDLEYNQLEGSIPDSICLSVELYELELGGNK 280 (824)
Q Consensus 242 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 280 (824)
..+++|+.|+|++|.|+......+...- ...+++++++
T Consensus 304 ~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 304 DKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred ccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 3457777777777776644333333211 3456776665
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=1.3e-10 Score=123.86 Aligned_cols=182 Identities=16% Similarity=0.183 Sum_probs=97.6
Q ss_pred CCCCCCCEEEecCCccC---------CccchhhcCCCCCCEEEccccc-CcccCCccccccCCccEEEccCccccccCCc
Q 040845 218 TNLTDLTTIVLGGNKLN---------GSIPITLGKLQKLQDVDLEYNQ-LEGSIPDSICLSVELYELELGGNKLSGSIPA 287 (824)
Q Consensus 218 ~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 287 (824)
..+++|+.|.+.++... +.+...+..+++|+.|+|++|. +. .+. + .+++|+.|+|..|.+......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 34556666666543221 1233445566667777766652 21 122 2 255666666666655432222
Q ss_pred ccc--CCCCCcEEEcCCC--CCCCCCCcccccccccccccccccccCcCCccc--cccccchhhhcccccccccCCCcc-
Q 040845 288 CFS--NMTFLKVLSLGSN--ELTSIPLNFWSLKDILDLNLSSNCFSGPLPLEI--RNLKALIEIDFSMNNFSGIIPMEI- 360 (824)
Q Consensus 288 ~~~--~l~~L~~L~L~~N--~l~~lp~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~~~- 360 (824)
.+. .+++|+.|+|+.+ ....- ..+.. +...+ ..+++|+.|+|++|.+.+..+..+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~-----------------~~~~~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la 273 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFD-----------------GDMNV-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFL 273 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCC-----------------SCGGG-TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccc-----------------hhHHH-HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHH
Confidence 222 4566666665321 10000 00000 00111 246777888887777764322222
Q ss_pred --CCCCCCCeEEccCcccccc----CCccccccccccEEEccCcccCCCCcccccC-CcccceeeccCCc
Q 040845 361 --GSLKNLENLFLEYNRLEGS----IPDSFGDLISLKSLNLSYNNLSGTIPVSLEK-LSYLKDLNLSFNK 423 (824)
Q Consensus 361 --~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~l~~N~ 423 (824)
..+++|+.|+|+.|.|++. ++..+..+++|+.|+|++|.|+...-..+.. + ...+++++|+
T Consensus 274 ~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 274 ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 2578899999999998863 3444456789999999999887433333332 2 2467888876
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.85 E-value=1.2e-09 Score=114.56 Aligned_cols=188 Identities=18% Similarity=0.173 Sum_probs=122.7
Q ss_pred CceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCc--ceeEEeeeecCC---eeEEEEecc
Q 040845 532 NNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRN--LVKVISSCSNEE---FKALVLEYM 605 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 605 (824)
.+.++.|.+..||++. ..+++|..... .....+.+|+++++.+. +.. +.+++....... ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999873 56889986432 34567889999998884 332 445555543333 457999999
Q ss_pred CCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcC------------------------------------------
Q 040845 606 PHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFG------------------------------------------ 643 (824)
Q Consensus 606 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 643 (824)
+|.++.+.... .++..++..++.++++.++.||..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888654332 467777888888999888888841
Q ss_pred -------------CCCCeEecCCCCCCeeeCC--CCcEEEeecccccccCCCCCcccccc------------cccccccc
Q 040845 644 -------------YSAPVIHCDLKPSNVLLDD--NMVAHLSDFGIAKLLTGEDQSMTQTQ------------TLATIGYM 696 (824)
Q Consensus 644 -------------~~~~ivH~Dlk~~Nill~~--~~~~kl~Dfg~a~~~~~~~~~~~~~~------------~~~~~~y~ 696 (824)
....++|+|++|.||++++ +..+.++||+.+..-.....-..... .....+..
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~ 255 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHK 255 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCS
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCC
Confidence 0135799999999999998 55678999998865321100000000 00000111
Q ss_pred C-ccCcCCCCCCccchHHHHHHHHHHHHhCCCCCc
Q 040845 697 A-PEYGREGQVSTNGDVYSFGIMLMETFTRKKPTD 730 (824)
Q Consensus 697 a-PE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~ 730 (824)
. |+... ......+.|++|.++|++.+|..+|.
T Consensus 256 ~~~~~~~--r~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 256 DIPTVLE--KYRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp CHHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHH--HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1 11111 11223589999999999999998753
No 414
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.58 E-value=2.3e-07 Score=97.83 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=101.3
Q ss_pred cCCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCC----CcceeEEeeeecCCeeEEEEe
Q 040845 528 KFSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRH----RNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 528 ~~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~lv~e 603 (824)
.....+.++.|....||++ |+.+++|+.... .....+..|+.+++.+.+ -.+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 4556678999999999998 677889976422 224568899999998865 224555555 45689999
Q ss_pred ccCCCCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCC---------------------------------------
Q 040845 604 YMPHGSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGY--------------------------------------- 644 (824)
Q Consensus 604 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~--------------------------------------- 644 (824)
|++|.++.+.... .++..++..++.++++.++.||...
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999888643321 3566777788888888888888321
Q ss_pred ---------------------CCCeEecCCCCCCeeeCCCCcEEEeecccccc
Q 040845 645 ---------------------SAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKL 676 (824)
Q Consensus 645 ---------------------~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~ 676 (824)
...++|+|++|.||+++.+..+.++||+.+..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 12359999999999999876679999998864
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=1.1e-08 Score=98.18 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=36.8
Q ss_pred CCccEEEccCCeeeee----cCccccCCCCCceEec--cCccccccC----CccccCCCCCCEEEccCCcCC
Q 040845 94 PNLEVLYLWGNNFSGT----IPHFIFNASKLSKLAL--EMNSFSGFI----PSTFGNLRNLEWLTLYDNNLT 155 (824)
Q Consensus 94 ~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L--~~N~i~~~~----~~~~~~l~~L~~L~L~~n~i~ 155 (824)
++|++|+|++|.|+.. +...+...++|++|+| ++|.|+... ...+...++|++|+|++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555666666655432 3445556667777777 667766432 233444567777777777664
No 416
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=1.9e-08 Score=96.53 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=58.8
Q ss_pred ccccCCCCCceEeccCc-ccccc----CCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCcc
Q 040845 112 HFIFNASKLSKLALEMN-SFSGF----IPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGI 186 (824)
Q Consensus 112 ~~l~~l~~L~~L~L~~N-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 186 (824)
..+...++|++|+|++| .|+.. +...+...++|++|+|++|.|+..... .+...+...++|++|+|++|.|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~-~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF-ALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH-HHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH-HHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34555566666666666 65532 123344445566666666655442211 1122333445555555555555432
Q ss_pred CCccccccccccccEEEeecCcceecCCccCCCCCCCCEEEe--cCCccCCc----cchhhcCCCCCCEEEcccccCc
Q 040845 187 LPRTYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVL--GGNKLNGS----IPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 187 ~~~~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
.... +...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 109 g~~~----------------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILA----------------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH----------------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHH----------------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1111 1223344455666666 55655532 1223334455555555555554
No 417
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=1.7e-08 Score=101.75 Aligned_cols=80 Identities=25% Similarity=0.254 Sum_probs=41.4
Q ss_pred CcCCCceeeccCCccccccCc-cccCCCCCccEEEccCCeeeeecCccccCCC--CCceEeccCccccccCC-------c
Q 040845 67 NVSTLKAFAVTNNSLSGCLSS-ITDVGLPNLEVLYLWGNNFSGTIPHFIFNAS--KLSKLALEMNSFSGFIP-------S 136 (824)
Q Consensus 67 ~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~L~~N~i~~~~~-------~ 136 (824)
++++|++|+|++|+|+++..- .....+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 345555555555555543210 0011355566666666655533 2233333 67777777777665443 2
Q ss_pred cccCCCCCCEEE
Q 040845 137 TFGNLRNLEWLT 148 (824)
Q Consensus 137 ~~~~l~~L~~L~ 148 (824)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356677777775
No 418
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.43 E-value=1.8e-06 Score=88.91 Aligned_cols=139 Identities=19% Similarity=0.118 Sum_probs=93.0
Q ss_pred CCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCC---cceeEEeeeecCCeeEEEEeccCC
Q 040845 531 ENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHR---NLVKVISSCSNEEFKALVLEYMPH 607 (824)
Q Consensus 531 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~~ 607 (824)
..+.||.|.++.||+++..+|+.++||+...........+..|++.++.+++. .+++++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 35679999999999999888999999986543333456789999999999865 577787763 36899999998
Q ss_pred CCHH--------HH---hhhCCC--------------------CCCHHHHH-----------------------HHHHHH
Q 040845 608 GSLE--------KY---LHSSNY--------------------SLDIFQRL-----------------------NIMIDV 633 (824)
Q Consensus 608 g~L~--------~~---l~~~~~--------------------~~~~~~~~-----------------------~i~~~i 633 (824)
+++. +. +|.... .-+|.+.. ..+..+
T Consensus 95 ~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~~l 174 (288)
T 3d1u_A 95 RPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEKV 174 (288)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 8642 11 232210 01232211 111122
Q ss_pred HHHHHH-hhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 634 ASALEY-LHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 634 ~~~l~~-LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
+..+.. +.......++|+|+.+.||+++. +.+.++|| .+.
T Consensus 175 ~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~-~~~~~iD~-~~~ 215 (288)
T 3d1u_A 175 LDALDHLAGDPEPPARIHGDLWNGNVLWQD-DGAVVIDP-AAH 215 (288)
T ss_dssp HHTHHHHTCSCCCCEEECSCCSGGGEEEET-TEEEECSC-CCE
T ss_pred HHHHHHHhcCCCCCcceECCCCcCcEEEeC-CCeEEEcC-CcC
Confidence 222221 11223578999999999999988 45889999 654
No 419
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=2.3e-08 Score=100.80 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=42.6
Q ss_pred cccccchhhhccccccccc--CCCccCCCCCCCeEEccCccccccCCccccccc--cccEEEccCcccCCCCcc------
Q 040845 337 RNLKALIEIDFSMNNFSGI--IPMEIGSLKNLENLFLEYNRLEGSIPDSFGDLI--SLKSLNLSYNNLSGTIPV------ 406 (824)
Q Consensus 337 ~~l~~L~~L~l~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~------ 406 (824)
.++++|+.|+|++|+|++. +|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3455566666666666552 234445566666666666666543 2233333 566666666666544441
Q ss_pred -cccCCcccceee
Q 040845 407 -SLEKLSYLKDLN 418 (824)
Q Consensus 407 -~~~~l~~L~~L~ 418 (824)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244555555554
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.42 E-value=1.1e-06 Score=90.29 Aligned_cols=134 Identities=17% Similarity=0.106 Sum_probs=99.4
Q ss_pred eeeeccce-EEEEEEEC-CCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeeecCCeeEEEEeccCCCCH
Q 040845 534 LIGRGGFG-SVYKARIR-DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCSNEEFKALVLEYMPHGSL 610 (824)
Q Consensus 534 ~lg~G~~g-~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~L 610 (824)
.+..|..| .||+.... ++..+++|+-.. .....+.+|+..|+.+. +--+.++++++.+++..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45667766 68998755 467899998653 34556788999999884 33477889999989999999999999888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcC-----------------------------------------------
Q 040845 611 EKYLHSSNYSLDIFQRLNIMIDVASALEYLHFG----------------------------------------------- 643 (824)
Q Consensus 611 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~----------------------------------------------- 643 (824)
.+...... .....++.+++..++.||..
T Consensus 108 ~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 77654321 22345667777777777731
Q ss_pred --------CCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 644 --------YSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 644 --------~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
....++|+|+.+.||++++++.+-|+||+.+.
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 01237899999999999988777899999875
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.39 E-value=1.4e-06 Score=90.93 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=96.1
Q ss_pred CceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCC---cceeEEeeee-cCCeeEEEEeccCC
Q 040845 532 NNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHR---NLVKVISSCS-NEEFKALVLEYMPH 607 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 607 (824)
.+.++.|....||+. |..+++|+.. .......+..|+++++.+++. .+.+++.+.. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 356888999999998 5678888743 223456788999999999753 3566777664 45667899999999
Q ss_pred CCHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcC--------------------------------------------
Q 040845 608 GSLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFG-------------------------------------------- 643 (824)
Q Consensus 608 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~-------------------------------------------- 643 (824)
.++.+.... .++..+...++.++++.++.||..
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 888763221 234455555666666666666521
Q ss_pred -------------CCCCeEecCCCCCCeeeCC---CCc-EEEeecccccc
Q 040845 644 -------------YSAPVIHCDLKPSNVLLDD---NMV-AHLSDFGIAKL 676 (824)
Q Consensus 644 -------------~~~~ivH~Dlk~~Nill~~---~~~-~kl~Dfg~a~~ 676 (824)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 1335699999999999987 455 48999997753
No 422
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.23 E-value=1.6e-06 Score=92.85 Aligned_cols=79 Identities=8% Similarity=-0.024 Sum_probs=56.6
Q ss_pred cee-eeccceEEEEEEEC-------CCcEEEEEEeeccc---cchhhhHHHHHHHHhcCC-C--CcceeEEeeeecC---
Q 040845 533 NLI-GRGGFGSVYKARIR-------DGMEVAVKVFNLQC---GRAFKSFDVECAMMKSIR-H--RNLVKVISSCSNE--- 595 (824)
Q Consensus 533 ~~l-g~G~~g~V~~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~--- 595 (824)
+.| +.|....+|+.... +++.+++|...... ......+..|+.+++.+. + -.+.++++++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 567 78889999998754 26789999865332 112356788999999884 3 3567788887655
Q ss_pred CeeEEEEeccCCCCHH
Q 040845 596 EFKALVLEYMPHGSLE 611 (824)
Q Consensus 596 ~~~~lv~e~~~~g~L~ 611 (824)
+..++||||++|.++.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 3568999999887654
No 423
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.22 E-value=3.7e-06 Score=89.80 Aligned_cols=74 Identities=8% Similarity=0.087 Sum_probs=56.7
Q ss_pred CCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc--ceeEEeeeecC-CeeEEEEeccCC
Q 040845 531 ENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN--LVKVISSCSNE-EFKALVLEYMPH 607 (824)
Q Consensus 531 ~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~~ 607 (824)
..+.++.|....+|+.+.. |+.+++|..... ..+..|+.+++.+.... +.++++++... +..++||||++|
T Consensus 45 ~i~~l~gG~~n~~y~v~~~-g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G 118 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDVG-GRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQG 118 (362)
T ss_dssp EEEEEEECSSEEEEEEEET-TEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCS
T ss_pred eEEECCCCCcceEEEEEEC-CcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCC
Confidence 3467899999999999864 889999987432 35888999999886543 56777776654 668999999987
Q ss_pred CCH
Q 040845 608 GSL 610 (824)
Q Consensus 608 g~L 610 (824)
.++
T Consensus 119 ~~l 121 (362)
T 3ovc_A 119 VTL 121 (362)
T ss_dssp EET
T ss_pred CCc
Confidence 655
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.96 E-value=3.2e-05 Score=84.04 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=50.0
Q ss_pred CceeeeccceEEEEEEEC-CCcEEEEEEeecccc-------chhhhHHHHHHHHhcCCC--C-cceeEEeeeecCCeeEE
Q 040845 532 NNLIGRGGFGSVYKARIR-DGMEVAVKVFNLQCG-------RAFKSFDVECAMMKSIRH--R-NLVKVISSCSNEEFKAL 600 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~~~l 600 (824)
.+.+|.|.++.||+++.. +++.|+||....... ...+.+..|+++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999754 468899998653211 123556789999988742 3 34456544 3445679
Q ss_pred EEeccCCC
Q 040845 601 VLEYMPHG 608 (824)
Q Consensus 601 v~e~~~~g 608 (824)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999763
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=5.3e-06 Score=77.28 Aligned_cols=59 Identities=3% Similarity=0.057 Sum_probs=33.5
Q ss_pred CCCcEEEccCCcccccccccccCCCCCCEEeCCCCc-CCcccChhhhCc----CCCceeeccCC
Q 040845 21 SNLKVLYLYNNRLQGEIIHEIGHLHNLGFLDLSQNK-LLGTIPAAIFNV----STLKAFAVTNN 79 (824)
Q Consensus 21 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n 79 (824)
..|++|||++|.|+......++++++|++|+|++|. |++..-..+..+ ++|++|+|++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 346777777777666555566666777777777764 553322333332 24555555554
No 426
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.86 E-value=4.5e-05 Score=80.97 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=79.7
Q ss_pred ceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCC--CcceeEEee------eecCCeeEEEEec
Q 040845 533 NLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRH--RNLVKVISS------CSNEEFKALVLEY 604 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~------~~~~~~~~lv~e~ 604 (824)
+.|+.|..+.||++...+| .+++|+.... ...+..|+.+++.+.. -.+.+++.. ....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 3466677899999987644 5899988642 2334456666665531 123444431 2345677899999
Q ss_pred cCCCCHH--------------HHhhhC--CC--C---------CCHHHH-------------------------------
Q 040845 605 MPHGSLE--------------KYLHSS--NY--S---------LDIFQR------------------------------- 626 (824)
Q Consensus 605 ~~~g~L~--------------~~l~~~--~~--~---------~~~~~~------------------------------- 626 (824)
++|.++. ..+|.. .. . ..|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9886432 111211 00 0 122211
Q ss_pred HHHHHHHHHHHHHhhc----------CCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 627 LNIMIDVASALEYLHF----------GYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 627 ~~i~~~i~~~l~~LH~----------~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
..+...+..++++|+. .....++|+|+++.||+++.++.+.++||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111223345556642 025789999999999999888899999999774
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=5.7e-06 Score=77.05 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=16.7
Q ss_pred cccEEEeecCcceecCCccCCCCCCCCEEEecCC
Q 040845 198 SLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGN 231 (824)
Q Consensus 198 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 231 (824)
.|++|++++|.|+..--..+..+++|+.|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3555555555544433344444555555555554
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.72 E-value=0.00023 Score=73.29 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=57.3
Q ss_pred CCCCceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCC---cceeEEeeeecCCeeEEEEecc
Q 040845 529 FSENNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHR---NLVKVISSCSNEEFKALVLEYM 605 (824)
Q Consensus 529 ~~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~ 605 (824)
......+|.|..+.||+.+..||+.|++|+...........+..|+..|+.+.-. -+.+++++. ..++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEee
Confidence 3445779999999999999999999999987654444456788999999988422 345555542 236899999
Q ss_pred CCCC
Q 040845 606 PHGS 609 (824)
Q Consensus 606 ~~g~ 609 (824)
+++.
T Consensus 93 ~~~~ 96 (288)
T 3f7w_A 93 DERP 96 (288)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.71 E-value=0.00015 Score=75.20 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=92.2
Q ss_pred CceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCC---CCcceeEEeeeecCCeeEEEEeccCCC
Q 040845 532 NNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR---HRNLVKVISSCSNEEFKALVLEYMPHG 608 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g 608 (824)
.+.|+.|....+|+.... +..+++|+.... ....+..|+..|+.+. ...+.+++++....+..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~~-~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLINDE-VQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEESS-SCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEEC-CCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 357899999999999864 778999987532 3567888999998884 356888999888888899999999987
Q ss_pred CHH--------H---HhhhCCC---------------------CCCHHHHH---HHHH----------------HHHHH-
Q 040845 609 SLE--------K---YLHSSNY---------------------SLDIFQRL---NIMI----------------DVASA- 636 (824)
Q Consensus 609 ~L~--------~---~l~~~~~---------------------~~~~~~~~---~i~~----------------~i~~~- 636 (824)
.+. + .+|.... .-+|.+.. ++.. .++..
T Consensus 117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l 196 (312)
T 3jr1_A 117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV 196 (312)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 541 1 1232211 12343321 1111 11111
Q ss_pred HHHhh-cCCCCCeEecCCCCCCeeeCCCCcEEEeecc
Q 040845 637 LEYLH-FGYSAPVIHCDLKPSNVLLDDNMVAHLSDFG 672 (824)
Q Consensus 637 l~~LH-~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg 672 (824)
...|. ......++|+|+.+.|++++.++ +.+.||+
T Consensus 197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 22342 12357899999999999999887 8899974
No 430
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.58 E-value=1.1e-05 Score=76.51 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=57.5
Q ss_pred cCCCCCceEeccCc-ccccc----CCccccCCCCCCEEEccCCcCCCCcCcccccccCCCCCCCcEEECcCCCCCccCCc
Q 040845 115 FNASKLSKLALEMN-SFSGF----IPSTFGNLRNLEWLTLYDNNLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDGILPR 189 (824)
Q Consensus 115 ~~l~~L~~L~L~~N-~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 189 (824)
.+-+.|++|+|++| +|... +.+++..-+.|+.|+|++|.|...... .+...+...+.|++|+|++|.|......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 33445555555553 44421 123333445555555555555543221 1233444555666666666665533222
Q ss_pred cccccccccccEEEeecCcceecCCccCCCCCCCCEEEecCC---ccCCc----cchhhcCCCCCCEEEcccccCc
Q 040845 190 TYVGNLSHSLKNFYMYNCNVSGGIPEEITNLTDLTTIVLGGN---KLNGS----IPITLGKLQKLQDVDLEYNQLE 258 (824)
Q Consensus 190 ~~~~~l~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n---~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 258 (824)
. +.+.+..-+.|++|+|++| .+... +..++...+.|+.|+++.|.+.
T Consensus 117 a----------------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 R----------------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp H----------------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred H----------------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1 1233444455666666544 22211 2334555566666666665543
No 431
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=2.3e-05 Score=74.48 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=23.4
Q ss_pred cCCCCCCEEEccCC-cCCCCcCcccccccCCCCCCCcEEECcCCCCCc
Q 040845 139 GNLRNLEWLTLYDN-NLTSSTLDLSFLSSLSNCKSLTHISLSNNPLDG 185 (824)
Q Consensus 139 ~~l~~L~~L~L~~n-~i~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 185 (824)
.+-+.|++|+|++| +|...... .+..++...+.|++|+|++|.|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~-~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCBH
T ss_pred hcCCCccEEECCCCCCCCHHHHH-HHHHHHhhCCCcCEEEccCCCCCh
Confidence 33456666666654 55432211 123445555566666666665543
No 432
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.42 E-value=0.00045 Score=75.39 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=48.5
Q ss_pred CCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccccccc--ccccccCccCcCCC---CCCccchHHHHHHHH
Q 040845 645 SAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTL--ATIGYMAPEYGREG---QVSTNGDVYSFGIML 719 (824)
Q Consensus 645 ~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~--~~~~y~aPE~~~~~---~~~~~~DvwslG~~l 719 (824)
...++|+|+++.||+++.++ ++++||+.+..-. ......... -...|.+|+..... ......++.+.+..+
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~---p~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGP---MGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQT 306 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEEC---HHHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCc---hHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 68899999999999998876 9999999886421 110000000 12345666554311 122335566788888
Q ss_pred HHHHhCC
Q 040845 720 METFTRK 726 (824)
Q Consensus 720 ~el~tg~ 726 (824)
|+.+++.
T Consensus 307 ~~~y~~~ 313 (420)
T 2pyw_A 307 WNLFNKR 313 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877653
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.39 E-value=0.00044 Score=71.69 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=46.2
Q ss_pred CceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcc-eeEEeeeecCCeeEEEEecc-CCCC
Q 040845 532 NNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNL-VKVISSCSNEEFKALVLEYM-PHGS 609 (824)
Q Consensus 532 ~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~g~ 609 (824)
.+.|+.|....+|++ +.+++|+..... ........|+.+++.+...++ .+++++. .+.-++++||+ ++.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~-~~~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGT-EEYINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCc-cceeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 678999999999999 568889875432 222334668888887743233 4666543 33346899999 6544
Q ss_pred H
Q 040845 610 L 610 (824)
Q Consensus 610 L 610 (824)
+
T Consensus 95 l 95 (301)
T 3dxq_A 95 M 95 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 434
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.39 E-value=0.00058 Score=71.56 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=90.9
Q ss_pred cccccHHHHHHhhccCCCC-----ceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc--ce
Q 040845 514 WRRFSYLELFQATDKFSEN-----NLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN--LV 586 (824)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~-----~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv 586 (824)
+..++.+++.....+|... +.|+.|....+|+....+| .+++|..... ...+.+..|+.+++.+.... +.
T Consensus 4 ~~~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP 80 (322)
T 2ppq_A 4 YTDITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCP 80 (322)
T ss_dssp -CCCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCC
T ss_pred cccCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCC
Confidence 3445667777777777663 3466788899999987655 6889987642 22345667888887774222 33
Q ss_pred eEEee------eecCCeeEEEEeccCCCCHHH--------------HhhhC--C--CC----C---CHHHHHH-------
Q 040845 587 KVISS------CSNEEFKALVLEYMPHGSLEK--------------YLHSS--N--YS----L---DIFQRLN------- 628 (824)
Q Consensus 587 ~l~~~------~~~~~~~~lv~e~~~~g~L~~--------------~l~~~--~--~~----~---~~~~~~~------- 628 (824)
+++.. ....+..+++++|++|..+.. .+|.. . .. . .|.....
T Consensus 81 ~~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 160 (322)
T 2ppq_A 81 LPLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERAD 160 (322)
T ss_dssp CBCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGG
T ss_pred cccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHH
Confidence 33322 122356789999998764311 01211 1 00 0 1221100
Q ss_pred -----HHHHHHHHHHHhhc----CCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 629 -----IMIDVASALEYLHF----GYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 629 -----i~~~i~~~l~~LH~----~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
+...+...+++++. ....+++|+|+++.||++++++.+.++||+.+.
T Consensus 161 ~~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 161 EVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp GTSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 00113344444441 224679999999999999887666899999775
No 435
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.23 E-value=0.00095 Score=70.29 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=74.7
Q ss_pred ceeeeccceE-EEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCC--CcceeEEeeeecCCeeEEEEeccCCCC
Q 040845 533 NLIGRGGFGS-VYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRH--RNLVKVISSCSNEEFKALVLEYMPHGS 609 (824)
Q Consensus 533 ~~lg~G~~g~-V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~g~ 609 (824)
+.|+.|+... +|+....+|+.+++|...... .+.+..|+.+++.+.. -.+.+++.+..+.+ +++||++++.+
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 3465565554 677765446778887654321 1445667777777742 23556776643333 68999997766
Q ss_pred HHHHhhhCC-------------------------CCCCHHHHH-------H-H------------HHHHHHHHHHhh---
Q 040845 610 LEKYLHSSN-------------------------YSLDIFQRL-------N-I------------MIDVASALEYLH--- 641 (824)
Q Consensus 610 L~~~l~~~~-------------------------~~~~~~~~~-------~-i------------~~~i~~~l~~LH--- 641 (824)
+.+++.... ..++..... . + ...+...++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 654432110 011111100 0 0 001111222221
Q ss_pred cCCCCCeEecCCCCCCeeeCCC----CcEEEeecccccc
Q 040845 642 FGYSAPVIHCDLKPSNVLLDDN----MVAHLSDFGIAKL 676 (824)
Q Consensus 642 ~~~~~~ivH~Dlk~~Nill~~~----~~~kl~Dfg~a~~ 676 (824)
......++|||+.+.||+++.+ +.+.++||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1125689999999999999874 6899999998864
No 436
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.15 E-value=0.0039 Score=65.34 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=91.0
Q ss_pred cccccHHHHHHhhccCCC-----CceeeeccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc--ce
Q 040845 514 WRRFSYLELFQATDKFSE-----NNLIGRGGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN--LV 586 (824)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv 586 (824)
+...+.+.+......|.+ ...++ |....||++...+|+.+++|...... ...+.+..|..+++.+.... ++
T Consensus 8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp 85 (328)
T 1zyl_A 8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVA 85 (328)
T ss_dssp CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBC
T ss_pred CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeec
Confidence 334555555555555543 23566 88889999987778789999986331 23456777888888774222 44
Q ss_pred eEEee-----eecCCeeEEEEeccCCCCHH-----H------H---hhh----CC----CCCCHHHH-------------
Q 040845 587 KVISS-----CSNEEFKALVLEYMPHGSLE-----K------Y---LHS----SN----YSLDIFQR------------- 626 (824)
Q Consensus 587 ~l~~~-----~~~~~~~~lv~e~~~~g~L~-----~------~---l~~----~~----~~~~~~~~------------- 626 (824)
+++.. ....+..+++|+|++|.++. . . +|. .. ...++...
T Consensus 86 ~~~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 165 (328)
T 1zyl_A 86 APVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATL 165 (328)
T ss_dssp CCCCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSS
T ss_pred ceeecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCc
Confidence 44443 12244567899999875321 1 1 111 00 11122111
Q ss_pred ---------HHHHHHHHHHHHHhhc-CCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 627 ---------LNIMIDVASALEYLHF-GYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 627 ---------~~i~~~i~~~l~~LH~-~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
...+..++..+.-.-. .....++|+|+++.||+++ + .+.++||+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 166 IPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 0111112222222211 1256789999999999999 4 89999998775
No 437
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=97.08 E-value=0.0018 Score=70.81 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=48.8
Q ss_pred ceeeeccceEEEEEEECC-CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCcc-eeEEeeeecCCeeEEEEeccCCCCH
Q 040845 533 NLIGRGGFGSVYKARIRD-GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRNL-VKVISSCSNEEFKALVLEYMPHGSL 610 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g~L 610 (824)
+.|+.|-...+|++...+ +..|++|+..... ...-+...|..+++.+...++ .++++++. . ..||||++|.++
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~-~~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~l 188 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKT-DEIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYAL 188 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-C-CSCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEEC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCCh-hhhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCccC
Confidence 568888899999998764 4789999875332 222223679999998864444 57777763 2 369999987443
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.05 E-value=0.0012 Score=72.05 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=49.5
Q ss_pred ceeeeccceEEEEEEECC--------CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc-ceeEEeeeecCCeeEEEEe
Q 040845 533 NLIGRGGFGSVYKARIRD--------GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN-LVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~e 603 (824)
+.|+.|....||++...+ ++.|++|+.... ...+.+..|..+++.+...+ ..++++.+.+ .+|+|
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e 152 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE 152 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEE
Confidence 568888899999998753 578999987432 11245567999988885333 3677776543 38999
Q ss_pred ccCCCC
Q 040845 604 YMPHGS 609 (824)
Q Consensus 604 ~~~~g~ 609 (824)
|++|.+
T Consensus 153 ~l~G~~ 158 (429)
T 1nw1_A 153 YIPSRP 158 (429)
T ss_dssp CCCEEE
T ss_pred EeCCcc
Confidence 997643
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.00081 Score=59.59 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=33.1
Q ss_pred eEEccCcccc-ccCCccccccccccEEEccCcccCCCCcccccCCcccceeeccCCcccCC
Q 040845 368 NLFLEYNRLE-GSIPDSFGDLISLKSLNLSYNNLSGTIPVSLEKLSYLKDLNLSFNKLKGE 427 (824)
Q Consensus 368 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~ 427 (824)
.++.++++|+ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5666666665 12443322 3566666666666644445556666666666666666543
No 440
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.96 E-value=0.0047 Score=58.79 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=70.5
Q ss_pred CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeecccccccCCCCCcccccc
Q 040845 609 SLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQ 688 (824)
Q Consensus 609 ~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~ 688 (824)
+|.+.+...+.+++++++|.++.|.+.++.-.-. .+.-..+=+.|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~--~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------- 97 (229)
T 2yle_A 34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAAR--RRQPRHRVRSAAQIRVWRDGAVTLAP-AADD------------- 97 (229)
T ss_dssp EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhh--cccCCceecCCcceEEecCCceeccc-cccc-------------
Confidence 7999999988899999999999999999877620 11111333456889999999987763 1110
Q ss_pred ccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCc
Q 040845 689 TLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTD 730 (824)
Q Consensus 689 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~ 730 (824)
.....+.|||... ...+.+.=|||+|+++|..+--..|-+
T Consensus 98 -~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~e~ 137 (229)
T 2yle_A 98 -AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLKEN 137 (229)
T ss_dssp ----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred -ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCCcc
Confidence 0122466888763 345788899999999999998666543
No 441
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.93 E-value=0.0022 Score=68.19 Aligned_cols=138 Identities=14% Similarity=0.190 Sum_probs=83.3
Q ss_pred ceeeeccceEEEEEEEC--------CCcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeeecCCeeEEEEe
Q 040845 533 NLIGRGGFGSVYKARIR--------DGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 603 (824)
+.+..|-...+|++... +++.|++|+.... ........+|..+++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 56777888999999864 2578999986332 223456678999998884 3334677776654 29999
Q ss_pred ccCCCCHHH-----------H------hhhCC----CCCC--HHHHHHHHHHHHH-------------------HHHH--
Q 040845 604 YMPHGSLEK-----------Y------LHSSN----YSLD--IFQRLNIMIDVAS-------------------ALEY-- 639 (824)
Q Consensus 604 ~~~~g~L~~-----------~------l~~~~----~~~~--~~~~~~i~~~i~~-------------------~l~~-- 639 (824)
|++|.++.. . +|... .... +.++.++..++.. .+..
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 998765421 0 12111 1122 3444445444322 1222
Q ss_pred --hh-cCCCCCeEecCCCCCCeeeCCC----CcEEEeeccccc
Q 040845 640 --LH-FGYSAPVIHCDLKPSNVLLDDN----MVAHLSDFGIAK 675 (824)
Q Consensus 640 --LH-~~~~~~ivH~Dlk~~Nill~~~----~~~kl~Dfg~a~ 675 (824)
|. ......++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 22 1224578999999999999876 789999999875
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.77 E-value=0.0017 Score=69.51 Aligned_cols=72 Identities=8% Similarity=0.187 Sum_probs=45.1
Q ss_pred ceeeeccceEEEEEEECC---------CcEEEEEEeeccccchhhhHHHHHHHHhcCCCCc-ceeEEeeeecCCeeEEEE
Q 040845 533 NLIGRGGFGSVYKARIRD---------GMEVAVKVFNLQCGRAFKSFDVECAMMKSIRHRN-LVKVISSCSNEEFKALVL 602 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 602 (824)
..++.|....+|++...+ ++.+++|+..... ........|..+++.+...+ +.++++... -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~~~~E~~~l~~L~~~g~~P~~~~~~~----~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-DELYNTISEFEVYKTMSKYKIAPQLLNTFN----GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-GGTSCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-cceecHHHHHHHHHHHHhcCCCCceEEecC----CcEEE
Confidence 467788889999998754 2688999875432 22223467888888885333 446665542 36899
Q ss_pred eccCCCC
Q 040845 603 EYMPHGS 609 (824)
Q Consensus 603 e~~~~g~ 609 (824)
||++|.+
T Consensus 114 e~i~G~~ 120 (369)
T 3c5i_A 114 EWLYGDP 120 (369)
T ss_dssp ECCCSEE
T ss_pred EEecCCc
Confidence 9998754
No 443
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.68 E-value=0.002 Score=57.07 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=20.0
Q ss_pred CCceEeccCccccccCCccccCCCCCCEEEccCCcCC
Q 040845 119 KLSKLALEMNSFSGFIPSTFGNLRNLEWLTLYDNNLT 155 (824)
Q Consensus 119 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~i~ 155 (824)
+|++|+|++|+|+.+.++.|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3455555555555444455555555555666655543
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.33 E-value=0.021 Score=59.95 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=43.0
Q ss_pred ccceEEEEEEECCCcEEEEEEeeccccchhhhHHHHHHHHhcCC---CCcceeEEee------eecCCeeEEEEeccCCC
Q 040845 538 GGFGSVYKARIRDGMEVAVKVFNLQCGRAFKSFDVECAMMKSIR---HRNLVKVISS------CSNEEFKALVLEYMPHG 608 (824)
Q Consensus 538 G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~------~~~~~~~~lv~e~~~~g 608 (824)
|....||+....+| .+++|+...... ..|+.+++.+. -+.+++++.. ....+..++||+|++|.
T Consensus 34 g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~ 106 (339)
T 3i1a_A 34 DTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAP 106 (339)
T ss_dssp CSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCC
T ss_pred ccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCC
Confidence 33679999987767 899998764321 34666666663 2224555543 23356778999999886
Q ss_pred CH
Q 040845 609 SL 610 (824)
Q Consensus 609 ~L 610 (824)
.+
T Consensus 107 ~~ 108 (339)
T 3i1a_A 107 NG 108 (339)
T ss_dssp BT
T ss_pred cC
Confidence 54
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.28 E-value=0.0082 Score=64.08 Aligned_cols=139 Identities=15% Similarity=0.188 Sum_probs=83.3
Q ss_pred ceeeeccceEEEEEEECC--------CcEEEEEEeeccccc---------h---------hhhHHHHHHHHhcCC-CCcc
Q 040845 533 NLIGRGGFGSVYKARIRD--------GMEVAVKVFNLQCGR---------A---------FKSFDVECAMMKSIR-HRNL 585 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~---------~---------~~~~~~E~~~l~~l~-h~ni 585 (824)
+.|..|-...+|++...+ ++.|.+++.-..... . .+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456668889999998753 368999987543211 0 112234888888884 4446
Q ss_pred eeEEeeeecCCeeEEEEeccCCCCHHH--H---------------hhhCC----CCCC--HHHHHHHHHHHH--------
Q 040845 586 VKVISSCSNEEFKALVLEYMPHGSLEK--Y---------------LHSSN----YSLD--IFQRLNIMIDVA-------- 634 (824)
Q Consensus 586 v~l~~~~~~~~~~~lv~e~~~~g~L~~--~---------------l~~~~----~~~~--~~~~~~i~~~i~-------- 634 (824)
.++++++.+ .+|+||+++.+|.. + +|... .... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677777653 28999998654321 1 11111 1122 223333433321
Q ss_pred --------------HHH----HHhh-cCCCCCeEecCCCCCCeeeCCC------CcEEEeeccccc
Q 040845 635 --------------SAL----EYLH-FGYSAPVIHCDLKPSNVLLDDN------MVAHLSDFGIAK 675 (824)
Q Consensus 635 --------------~~l----~~LH-~~~~~~ivH~Dlk~~Nill~~~------~~~kl~Dfg~a~ 675 (824)
.-+ .++. ......++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 112 2232 1224578999999999999876 789999998775
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=96.05 E-value=0.0094 Score=64.30 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=49.2
Q ss_pred ceeeeccceEEEEEEECC--------CcEEEEEEeeccccchhhhHHHHHHHHhcCC-CCcceeEEeeeecCCeeEEEEe
Q 040845 533 NLIGRGGFGSVYKARIRD--------GMEVAVKVFNLQCGRAFKSFDVECAMMKSIR-HRNLVKVISSCSNEEFKALVLE 603 (824)
Q Consensus 533 ~~lg~G~~g~V~~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 603 (824)
+.+..|-...+|+....+ ++.|++|+.... ....-+..+|..+++.+. +.-..++++.+. -+.|||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~-t~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~e 150 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKH-VGKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEE 150 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCC-C-CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCC-cchhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEE
Confidence 467778889999998763 578999986433 222334567888888884 333456665442 268999
Q ss_pred ccCCCC
Q 040845 604 YMPHGS 609 (824)
Q Consensus 604 ~~~~g~ 609 (824)
|++|.+
T Consensus 151 fI~G~~ 156 (424)
T 3mes_A 151 FIDGEP 156 (424)
T ss_dssp CCCSEE
T ss_pred EeCCcc
Confidence 998865
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=94.02 E-value=0.12 Score=55.51 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.8
Q ss_pred CeEecCCCCCCeee------CCCCcEEEeeccccc
Q 040845 647 PVIHCDLKPSNVLL------DDNMVAHLSDFGIAK 675 (824)
Q Consensus 647 ~ivH~Dlk~~Nill------~~~~~~kl~Dfg~a~ 675 (824)
.++|+|+.+.||++ +++..+.++||.+|.
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 45799999999999 456789999999876
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=86.08 E-value=1.8 Score=41.12 Aligned_cols=129 Identities=11% Similarity=0.214 Sum_probs=86.3
Q ss_pred HHHHHhcCCCCcceeEEeeeecCCeeEEEEeccCCC-CHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCeEec
Q 040845 573 ECAMMKSIRHRNLVKVISSCSNEEFKALVLEYMPHG-SLEKYLHSSNYSLDIFQRLNIMIDVASALEYLHFGYSAPVIHC 651 (824)
Q Consensus 573 E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~ 651 (824)
|+.++.. .||+++.. .+-.+++...+.++.-+.+ ++.. +. ..+..++++++.+|+....+++ .-+|-
T Consensus 36 el~LL~~-~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik----~~~~~eKlr~l~ni~~l~~~~~-----~r~tf 103 (215)
T 4ann_A 36 LMYLLEQ-HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK----SFTKNEKLRYLLNIKNLEEVNR-----TRYTF 103 (215)
T ss_dssp GGGGGGS-CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG----GSCHHHHHHHHHHGGGGGGGGG-----SSEEC
T ss_pred HHHHHhc-cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH----hcCHHHHHHHHHHHHHHHHHhc-----CceEE
Confidence 3444432 68888866 4556666666666654322 2222 22 5678899999999999886665 34788
Q ss_pred CCCCCCeeeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCcc
Q 040845 652 DLKPSNVLLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDE 731 (824)
Q Consensus 652 Dlk~~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~ 731 (824)
-++|+|++++.++.+++.-.|+-..+ +|. ..++..=.-.+=+++..+++++..|+.
T Consensus 104 ~L~P~NL~f~~~~~p~i~~RGik~~l-------------------~P~-----~~~ee~fL~qyKAliiall~~K~~Fe~ 159 (215)
T 4ann_A 104 VLAPDELFFTRDGLPIAKTRGLQNVV-------------------DPL-----PVSEAEFLTRYKALVICAFNEKQSFDA 159 (215)
T ss_dssp CCSGGGEEECTTSCEEESCCEETTTB-------------------SCC-----CCCHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred EEecceEEEcCCCCEEEEEccCccCC-------------------CCC-----CCCHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999877764332 222 112222334567788889999999887
Q ss_pred cccCcc
Q 040845 732 LFNGEM 737 (824)
Q Consensus 732 ~~~~~~ 737 (824)
...+..
T Consensus 160 l~~G~l 165 (215)
T 4ann_A 160 LVEGNL 165 (215)
T ss_dssp HHHSCG
T ss_pred HHcChH
Confidence 655544
No 449
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=81.29 E-value=1.1 Score=30.07 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=4.7
Q ss_pred eEeeehhhHH
Q 040845 472 LILGIVLPFS 481 (824)
Q Consensus 472 ~~~~~~~~~~ 481 (824)
.++++++++.
T Consensus 13 ~Ia~~vVGvl 22 (44)
T 2jwa_A 13 SIISAVVGIL 22 (44)
T ss_dssp HHHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 3455555533
No 450
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=79.91 E-value=5.5 Score=37.92 Aligned_cols=116 Identities=11% Similarity=0.129 Sum_probs=78.8
Q ss_pred CCCcceeEEeeeecCCeeEEEEeccCCC-CHHHHhhhCCCCCCHHHHHHHHHHHHHHHH-HhhcCCCCCeEecCCCCCCe
Q 040845 581 RHRNLVKVISSCSNEEFKALVLEYMPHG-SLEKYLHSSNYSLDIFQRLNIMIDVASALE-YLHFGYSAPVIHCDLKPSNV 658 (824)
Q Consensus 581 ~h~niv~l~~~~~~~~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dlk~~Ni 658 (824)
.||++ -..+-.+++...+.++.-+++ ++. .+. ..+..++++++.+++.... +++ .-+|--++|+|+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~-~i~----~~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL 115 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFA-AIR----KTTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENL 115 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHH-HHH----TSCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHH-HHH----hcCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceE
Confidence 57887 444446677776777765443 333 332 5778899999999988766 544 457888999999
Q ss_pred eeCCCCcEEEeecccccccCCCCCccccccccccccccCccCcCCCCCCccchHHHHHHHHHHHHhCCCCCccc
Q 040845 659 LLDDNMVAHLSDFGIAKLLTGEDQSMTQTQTLATIGYMAPEYGREGQVSTNGDVYSFGIMLMETFTRKKPTDEL 732 (824)
Q Consensus 659 ll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~tg~~p~~~~ 732 (824)
+++.++.+++.-.|+-..+ +|.- .++..=.-.+=+++..++.++..|+..
T Consensus 116 ~f~~~~~p~i~hRGi~~~l-------------------pP~e-----~~ee~fl~qyKali~all~~K~~Fe~l 165 (219)
T 4ano_A 116 MFNRALEPFFLHVGVKESL-------------------PPDE-----WDDERLLREVKATVLALTEGEYRFDEY 165 (219)
T ss_dssp EECTTCCEEESCCEETTTB-------------------SSCS-----CCHHHHHHHHHHHHHHHTTCSSCHHHH
T ss_pred EEeCCCcEEEEEcCCcccC-------------------CCCC-----CCHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 9999999999987764322 2321 111222345667888889898877653
No 451
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=73.43 E-value=0.34 Score=52.87 Aligned_cols=59 Identities=8% Similarity=0.058 Sum_probs=17.1
Q ss_pred CCceeeeccceEEEEEEECC-CcEEEE------EEeeccc--cchhhhHHHHHHHHhcCCCCcceeEEeee
Q 040845 531 ENNLIGRGGFGSVYKARIRD-GMEVAV------KVFNLQC--GRAFKSFDVECAMMKSIRHRNLVKVISSC 592 (824)
Q Consensus 531 ~~~~lg~G~~g~V~~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 592 (824)
+.+.+| ||.||+|.+.. ..+||| |..+... .+....+.+|+.+++.++|||+++.+++.
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~ 213 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFK 213 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceE
Confidence 445666 99999998864 367888 6654321 22345677899999999999999998875
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=72.27 E-value=2.3 Score=28.61 Aligned_cols=6 Identities=33% Similarity=0.279 Sum_probs=2.2
Q ss_pred Eeeehh
Q 040845 473 ILGIVL 478 (824)
Q Consensus 473 ~~~~~~ 478 (824)
|++.++
T Consensus 12 IA~gVV 17 (44)
T 2l2t_A 12 IAAGVI 17 (44)
T ss_dssp HHHHHH
T ss_pred EEEeeh
Confidence 333333
No 453
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.50 E-value=22 Score=28.95 Aligned_cols=46 Identities=15% Similarity=0.011 Sum_probs=31.0
Q ss_pred ceecCCccCCCCCCCCEEEecCCccCCccchhhcCCCCCCEEEcccc
Q 040845 209 VSGGIPEEITNLTDLTTIVLGGNKLNGSIPITLGKLQKLQDVDLEYN 255 (824)
Q Consensus 209 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 255 (824)
++.+-..+|.+|++|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33344566777888888887764 44466677777788877777653
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.78 E-value=39 Score=27.43 Aligned_cols=41 Identities=7% Similarity=-0.042 Sum_probs=19.4
Q ss_pred ccccccCCCCCCEEeCCCCcCCcccChhhhCcCCCceeeccC
Q 040845 37 IIHEIGHLHNLGFLDLSQNKLLGTIPAAIFNVSTLKAFAVTN 78 (824)
Q Consensus 37 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 78 (824)
....|.++++|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3344455555555555443 2224444555555555555544
No 455
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=44.97 E-value=9.4 Score=24.84 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=6.4
Q ss_pred EeeehhhHHHHHH
Q 040845 473 ILGIVLPFSTIFM 485 (824)
Q Consensus 473 ~~~~~~~~~~~~~ 485 (824)
+.+++++.++++.
T Consensus 13 IAGiVvG~v~gv~ 25 (38)
T 2k1k_A 13 IVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHH
Confidence 4555555444433
No 456
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=44.23 E-value=2.1e+02 Score=32.31 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH--HHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 624 FQRLNIMIDVA--SALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 624 ~~~~~i~~~i~--~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
..+..++..+| +.+.|+= || +|=+++|||++.+|.+.=+|||.+.
T Consensus 529 ~ar~nF~~SlA~~Svv~YIL-----Gl--GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYLL-----GV--GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHc-----cC--CCCCCcceEEeCCCCEEEEeehhhh
Confidence 44555666554 3444543 22 6889999999999999999999875
No 457
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=36.28 E-value=3.5e+02 Score=29.94 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHH--HHHHHhhcCCCCCeEecCCCCCCeeeCCCCcEEEeeccccc
Q 040845 623 IFQRLNIMIDVA--SALEYLHFGYSAPVIHCDLKPSNVLLDDNMVAHLSDFGIAK 675 (824)
Q Consensus 623 ~~~~~~i~~~i~--~~l~~LH~~~~~~ivH~Dlk~~Nill~~~~~~kl~Dfg~a~ 675 (824)
+..+..++...| +.+.|+= || +|=+++|||++.+|++.=+|||.+.
T Consensus 454 ~~a~~nF~~S~A~ySvv~YIL-----Gi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYIL-----GV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheee-----ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 455666666654 3455554 22 6888999999999999999999874
No 458
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=24.66 E-value=48 Score=19.31 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 040845 481 STIFMTAIILFIIKYQ 496 (824)
Q Consensus 481 ~~~~~~~~~~~~~~~r 496 (824)
+++-+.+..+|.+.|-
T Consensus 14 alltflafgfwlfkyl 29 (32)
T 2lx0_A 14 ALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444445555443
No 459
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=22.88 E-value=1.2e+02 Score=30.68 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=40.6
Q ss_pred eeEEEEeccCCCCHHHHhhhCC-CCCCHHHHHHHHHHHH--HHHHHhhcCCCC-CeEe-cCCCCCCeeeCCCCc-EEEee
Q 040845 597 FKALVLEYMPHGSLEKYLHSSN-YSLDIFQRLNIMIDVA--SALEYLHFGYSA-PVIH-CDLKPSNVLLDDNMV-AHLSD 670 (824)
Q Consensus 597 ~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~--~~l~~LH~~~~~-~ivH-~Dlk~~Nill~~~~~-~kl~D 670 (824)
..+++|+|++|..|.+.-...- ..+.. +.+.++. -++.+.....++ +.++ .--.+.|||+++++. +.++|
T Consensus 156 ~~~l~meyv~G~~L~e~~~~~~~~~f~~----~~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~~~~~ID 231 (342)
T 1cja_A 156 ANILLMELVRGITLNKLTTTSAPEVLTK----STMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGATVVPID 231 (342)
T ss_dssp SEEEEEECCCEEESTTCCSSSHHHHSCH----HHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTTCEEECS
T ss_pred cceehhhhcCCCccccchhhhhhhhcCH----HHHHhhchhheehhhhcCCccCcccccCCCChhheEEeCCCCeEEEEc
Confidence 4669999998766543311100 01121 2233332 334444422222 2222 235788999976554 88999
Q ss_pred cccccc
Q 040845 671 FGIAKL 676 (824)
Q Consensus 671 fg~a~~ 676 (824)
-+.+..
T Consensus 232 hn~af~ 237 (342)
T 1cja_A 232 SKIIPL 237 (342)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 998864
No 460
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=26.98 E-value=20 Score=23.17 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhc
Q 040845 484 FMTAIILFIIKYQK 497 (824)
Q Consensus 484 ~~~~~~~~~~~~rk 497 (824)
++.++++.+.|.+|
T Consensus 22 iisLIiLi~~w~qK 35 (39)
T 2l6w_A 22 IISLIILIMLWQKK 35 (39)
Confidence 33444444455444
Done!