BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040846
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F +E AF R+ GV +T GY G L PTY +V G T H E V+V YD + S+ +L
Sbjct: 104 FWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQYDPKECSFDTLI 163
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
D+ W HDPT N + T +S IYY E+ K A+ES R+Q LN++IVT+I+
Sbjct: 164 DVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTEILP- 222
Query: 122 DSEFCMAENQFQKYYLQKCCRL 143
+F AE ++ + YL K R
Sbjct: 223 AKKFYRAE-EYHQQYLAKGGRF 243
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F +E F +L GV TA GY GG PTYREVC G TGH EAV++ YD ISY+ L
Sbjct: 52 FWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLL 111
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKL----NKRIVTK 117
+FWE HDP T +SAIY E+ A+ S R Q + + R +T
Sbjct: 112 QVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITT 171
Query: 118 IIQFDSEFCMAENQFQKY 135
I + F AE+ Q+Y
Sbjct: 172 EIANATPFYYAEDDHQQY 189
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F +E F +L GV TA GY GG PTYREVC G TGH EAV++ YD ISY+ L
Sbjct: 53 FWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLL 112
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKL----NKRIVTK 117
+FWE HDP T +SAIY E+ A+ S R Q + + R +T
Sbjct: 113 QVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITT 172
Query: 118 IIQFDSEFCMAENQFQKY 135
I + F AE+ Q+Y
Sbjct: 173 EIANATPFYYAEDDHQQY 190
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F +E F +L GV TA GY GG PTYREV G TGH EAV++ YD ISY+ L
Sbjct: 52 FWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYDPSVISYEQLL 111
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKL----NKRIVTK 117
+FWE HDP T +SAIY E+ A+ S R Q + + R +T
Sbjct: 112 QVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITT 171
Query: 118 IIQFDSEFCMAENQFQKY 135
I + F AE+ Q+Y
Sbjct: 172 EIANATPFYYAEDDHQQY 189
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F E F L GV T G+ GG PTY+EVC G TGH E V+V + + IS++ L
Sbjct: 53 FWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELL 112
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKR---IVTKI 118
+FWE HDPT + +SAIY + E A +SK Q L++ ++T
Sbjct: 113 KVFWENHDPTQGXRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTD 172
Query: 119 IQFDSEFCMAENQFQKYYLQKCCRLC 144
I+ F AE+ Q+Y + C
Sbjct: 173 IREGQTFYYAEDYHQQYLSKDPDGYC 198
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F E F L GV T G+ GG PTY+EVC G TGH E V+V + + IS++ L
Sbjct: 61 FWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELL 120
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKR---IVTKI 118
+FWE HDPT + +SAIY + E A +SK Q L++ ++T
Sbjct: 121 KVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTD 180
Query: 119 IQFDSEFCMAENQFQKY 135
I+ F AE+ Q+Y
Sbjct: 181 IREGQTFYYAEDYHQQY 197
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F E F L GV T G+ GG + PTY+EVC TGH E V+V Y + IS++ L
Sbjct: 52 FWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELL 111
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKR---IVTKI 118
+FWE HDPT T +SA+Y + + + A SK Q L+K +T
Sbjct: 112 KVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTD 171
Query: 119 IQFDSEFCMAENQFQKY 135
I+ F AE+ Q+Y
Sbjct: 172 IREGQVFYYAEDYHQQY 188
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F + +L GV+ T GY GG + TYR H E +++ +D + ISY+ +
Sbjct: 12 FWGXQDLIRKLPGVIETRVGYTGGDVPNATYRNHGT----HAEGIEIIFDPERISYRRIL 67
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQE--SKIRRQMKLNKRIVTKII 119
++F++ HDPT ++ + T +SAIYY ++E+++ AQE + + ++VT++
Sbjct: 68 ELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVE 127
Query: 120 QFDSEFCMAENQFQKY 135
+F AE + Q Y
Sbjct: 128 PV-RDFWEAEPEHQNY 142
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 1/144 (0%)
Query: 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSL 60
+F LE+ F R++GV+ +GY G K P+Y +V TGH E VKV YD +S +
Sbjct: 12 SFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDI 71
Query: 61 CDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQ 120
F+ DPT+ N T +S +YY + E+ + R Q K +V +
Sbjct: 72 LQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEP 131
Query: 121 FDSEFCMAENQFQKYYLQKCCRLC 144
F AE Q Y ++ C
Sbjct: 132 L-KNFYDAEEYHQDYLIKNPNGYC 154
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F LE+ F R++GV+ +GY G K P+Y +V TGH E VKV YD +S +
Sbjct: 13 FWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDIL 72
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
F+ DPT+ N T +S +YY + E+ + R Q K +V +
Sbjct: 73 QYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPL 132
Query: 122 DSEFCMAENQFQKYYLQKCCRLC 144
F AE Q Y ++ C
Sbjct: 133 -KNFYDAEEYHQDYLIKNPNGYC 154
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F LE+ F R++GV+ +GY G K P+Y +V TGH E VKV YD +S +
Sbjct: 12 FWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDIL 71
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
F+ DPT+ N T +S +YY + E+ + R Q K +V +
Sbjct: 72 QYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPL 131
Query: 122 DSEFCMAENQFQKYYLQKCCRLC 144
F AE Q Y ++ C
Sbjct: 132 -KNFYDAEEYHQDYLIKNPNGYC 153
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 73.2 bits (178), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F LE+ F R++GV+ +GY G K P+Y +V TGH E VKV YD +S +
Sbjct: 13 FWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDIL 72
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
F+ DPT+ N T +S +YY + E+ + R Q K +V +
Sbjct: 73 QYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPL 132
Query: 122 DSEFCMAENQFQKYYLQ 138
F AE Q Y ++
Sbjct: 133 -KNFYDAEEYHQDYLIK 148
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F L+ GV+ T GY GG + TYR H EAV++ +D Y++L
Sbjct: 35 FWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGT----HAEAVEIIFDPTVTDYRTLL 90
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQE--SKIRRQMKLNKRIVTKII 119
+ F++ HDPT ++ T +SAI+Y +E++++ A + + + ++VT++
Sbjct: 91 EFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVS 150
Query: 120 QFDSEFCMAENQFQKYYLQK 139
+F AE + Q YLQ+
Sbjct: 151 P-AGDFWEAEPEHQD-YLQR 168
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
F LE F R++GV+ T+ GY G ++ Y+ + E T H E V+V YD++ +S + +
Sbjct: 12 FWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKE--TDHAETVQVIYDEKEVSLREIL 69
Query: 62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
++ DP + N ++ IYY +E + ++ L ++I ++ Q
Sbjct: 70 LYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQL 129
Query: 122 DSEFCMAENQFQKYYLQKCCRLC 144
+ +AE+ Q Y + C
Sbjct: 130 -RHYILAEDYHQDYLRKNPSGYC 151
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 31 TYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYY 90
+Y+ VC G T E ++V Y+ + I+ + L D F+ HDPT N T +S ++
Sbjct: 63 SYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFA 122
Query: 91 CNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQK 139
++ + K+ + K Q K +I T +I+ F AE ++ + YL K
Sbjct: 123 HSDADLKELAKIKEEWQPKWGNKIAT-VIEPIKNFYDAE-EYHQLYLDK 169
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 31 TYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYY 90
+Y+ VC G T E ++V Y+ + I+ + L D F+ HDPT N T +S ++
Sbjct: 66 SYKRVCGGDTDFAEVLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFA 125
Query: 91 CNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQK 139
++ + K+ + K Q K +I T +I+ F AE ++ + YL K
Sbjct: 126 HSDADLKELAKIKEEWQPKWGNKIAT-VIEPIKNFYDAE-EYHQLYLDK 172
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 15 VMRTATGYCGGTLKKP------TYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETH 68
++ + GY G K +Y+ V G T E ++V Y+ + I+ + L D F+ H
Sbjct: 40 IVDSKVGYANGEESKKDSPSSVSYKRVSGGDTDFAEVLQVSYNPKVITLRELTDFFFRIH 99
Query: 69 DPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMA 128
DPT N T +S ++ ++ + K+ + K Q K +I T +I+ F A
Sbjct: 100 DPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGNKIAT-VIEPIKNFYDA 158
Query: 129 ENQFQKYYLQKCCR--LCESLSLR 150
E ++ + YL K + C + LR
Sbjct: 159 E-EYHQLYLDKNPQGYACPTHYLR 181
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 96 RKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYY 136
R+ Q++KI + ++ K IV K+I+ +E QF+K+Y
Sbjct: 380 REMLQQNKIMKVIR--KNIVKKLIEAFNEIAEDSEQFEKFY 418
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 144 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 195
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 196 GLARDMYDKEY 206
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 124 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 175
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 176 GLARDMYDKEY 186
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 123 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 174
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 175 GLARDMYDKEY 185
>pdb|4FXG|C Chain C, Complement C4 In Complex With Masp-2
pdb|4FXG|F Chain F, Complement C4 In Complex With Masp-2
pdb|4FXK|C Chain C, Human Complement C4
Length = 291
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 70 PTNRNYLNFGLSTH----LKSAIYYCNEEERKQAQ--ESKIRRQMKLNKRIVTKIIQFDS 123
P R L GL +K A YY E Q + R +L + +T+++ F
Sbjct: 143 PRQRRALERGLQDEDGYRMKFACYYPRVEYGFQVKVLREDSRAAFRLFETKITQVLHFTK 202
Query: 124 EFCMAENQFQKYYLQKCCRL 143
+ A NQ + + ++ CRL
Sbjct: 203 DVKAAANQMRNFLVRASCRL 222
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 121 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 172
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 173 GLARDMYDKEY 183
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 118 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 169
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 170 GLARDMYDKEY 180
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 126 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 177
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 178 GLARDMYDKEY 188
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 125 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 176
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 177 GLARDMYDKEY 187
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 145 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 196
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 197 GLARDMYDKEY 207
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 66 ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
ETH+PT ++ + FGL K Y + +K R L+++ K+ ++F
Sbjct: 126 ETHNPTVKDLIGFGLQV-AKGMKYLAS---KKFVHRDLAARNCMLDEKFTVKV----ADF 177
Query: 126 CMAENQFQKYY 136
+A + + K Y
Sbjct: 178 GLARDMYDKEY 188
>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
pdb|1Y6Z|B Chain B, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
Protein Pf14_0417
Length = 263
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 88 IYYCNEEERKQAQESKIRRQMK-LNKRIVTKIIQFDSEFCMAENQFQKY 135
IYY + E +K AQ S ++K LN ++ + D EFC++ KY
Sbjct: 204 IYYISGENKKTAQNSPSLEKLKALNYDVLFSLEPID-EFCLSSLTVNKY 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,594,293
Number of Sequences: 62578
Number of extensions: 168802
Number of successful extensions: 547
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 37
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)