Query 040846
Match_columns 166
No_of_seqs 124 out of 1141
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 12:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0225 MsrA Peptide methionin 100.0 2.1E-71 4.5E-76 440.5 15.3 144 2-146 16-161 (174)
2 PRK14054 methionine sulfoxide 100.0 3.6E-67 7.9E-72 418.2 16.8 154 1-155 12-168 (172)
3 PRK13014 methionine sulfoxide 100.0 5E-67 1.1E-71 421.7 16.9 162 1-164 17-181 (186)
4 TIGR00401 msrA methionine-S-su 100.0 3.4E-66 7.3E-71 404.5 15.7 139 1-140 9-149 (149)
5 PF01625 PMSR: Peptide methion 100.0 1.3E-66 2.9E-71 409.1 10.7 145 1-146 9-154 (155)
6 PRK00058 methionine sulfoxide 100.0 4.6E-65 1E-69 417.1 16.3 147 1-148 54-204 (213)
7 KOG1635 Peptide methionine sul 100.0 3.2E-64 6.9E-69 398.4 13.5 147 1-148 33-180 (191)
8 PRK05528 methionine sulfoxide 100.0 4.3E-62 9.3E-67 383.8 15.7 139 2-148 11-149 (156)
9 PRK05550 bifunctional methioni 100.0 2.9E-61 6.2E-66 409.1 15.7 146 1-148 136-282 (283)
10 PRK14018 trifunctional thiored 100.0 5.2E-60 1.1E-64 429.0 16.1 147 2-150 208-354 (521)
11 PF00403 HMA: Heavy-metal-asso 93.1 0.26 5.7E-06 31.8 4.8 42 4-64 15-56 (62)
12 COG2608 CopZ Copper chaperone 84.9 2.6 5.7E-05 28.5 4.9 40 5-63 20-59 (71)
13 PF02682 AHS1: Allophanate hyd 81.5 2 4.3E-05 35.1 3.7 64 5-91 30-95 (202)
14 COG2049 DUR1 Allophanate hydro 80.0 2.2 4.8E-05 35.8 3.5 40 3-63 26-67 (223)
15 TIGR02712 urea_carbox urea car 74.5 12 0.00025 38.4 7.5 69 12-104 842-913 (1201)
16 smart00796 AHS1 Allophanate hy 65.4 11 0.00024 30.7 4.2 59 12-93 39-98 (201)
17 COG5053 CDC33 Translation init 61.4 20 0.00044 29.7 5.1 59 57-115 132-193 (217)
18 PF11491 DUF3213: Protein of u 51.7 8.6 0.00019 27.7 1.3 30 40-70 32-61 (88)
19 PRK14626 hypothetical protein; 48.6 12 0.00025 28.0 1.6 32 18-56 32-63 (110)
20 PRK14624 hypothetical protein; 47.5 12 0.00026 28.2 1.6 39 18-63 33-77 (115)
21 PF04536 TPM: TLP18.3, Psb32 a 45.3 64 0.0014 22.7 5.1 49 91-140 2-50 (119)
22 PRK14627 hypothetical protein; 42.6 23 0.0005 25.9 2.4 17 40-56 43-59 (100)
23 TIGR00370 conserved hypothetic 40.8 37 0.0008 27.8 3.6 30 13-64 33-62 (202)
24 PF02617 ClpS: ATP-dependent C 38.4 66 0.0014 22.1 4.1 68 48-118 10-82 (82)
25 COG0718 Uncharacterized protei 36.1 34 0.00074 25.4 2.4 17 40-56 47-63 (105)
26 COG2217 ZntA Cation transport 33.4 54 0.0012 31.9 3.9 42 3-64 18-60 (713)
27 KOG4309 Transcription mediator 31.2 51 0.0011 27.1 2.9 46 44-93 140-191 (217)
28 PLN00207 polyribonucleotide nu 27.6 92 0.002 31.3 4.5 51 15-67 224-283 (891)
29 PF05772 NinB: NinB protein; 26.9 1E+02 0.0022 23.6 3.7 33 90-122 2-34 (127)
30 PRK14622 hypothetical protein; 25.7 50 0.0011 24.2 1.8 17 40-56 43-59 (103)
31 PF04990 RNA_pol_Rpb1_7: RNA p 24.5 37 0.00081 26.1 1.0 27 43-69 7-38 (135)
32 PRK11920 rirA iron-responsive 23.8 55 0.0012 25.3 1.8 41 5-65 41-83 (153)
33 PRK03762 hypothetical protein; 23.5 58 0.0013 24.0 1.8 24 40-63 47-71 (103)
34 cd02145 BluB Subfamily of the 23.4 3.3E+02 0.0071 21.1 6.3 47 49-102 12-59 (196)
35 COG0136 Asd Aspartate-semialde 22.9 1.1E+02 0.0023 27.3 3.6 27 40-67 242-268 (334)
36 PRK14625 hypothetical protein; 22.9 59 0.0013 24.2 1.8 17 40-56 44-60 (109)
37 PRK14621 hypothetical protein; 22.6 61 0.0013 24.2 1.8 31 18-55 31-61 (111)
38 KOG2591 c-Mpl binding protein, 22.3 56 0.0012 31.3 1.8 87 41-131 172-260 (684)
39 PRK00587 hypothetical protein; 21.9 59 0.0013 23.8 1.5 17 40-56 42-58 (99)
40 PF04320 DUF469: Protein with 21.8 1.8E+02 0.0039 21.5 4.1 58 46-107 19-86 (101)
41 PRK06901 aspartate-semialdehyd 21.7 1.2E+02 0.0027 26.7 3.8 26 40-66 227-252 (322)
42 KOG0207 Cation transport ATPas 21.4 1.1E+02 0.0024 30.8 3.7 43 5-66 164-206 (951)
43 PF09299 Mu-transpos_C: Mu tra 21.4 45 0.00098 21.5 0.8 13 44-56 36-48 (62)
44 PRK10614 multidrug efflux syst 20.7 1E+02 0.0022 30.9 3.4 47 4-68 161-212 (1025)
45 PF11591 2Fe-2S_Ferredox: Ferr 20.1 56 0.0012 19.2 0.9 11 156-166 5-15 (34)
No 1
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-71 Score=440.52 Aligned_cols=144 Identities=42% Similarity=0.663 Sum_probs=141.5
Q ss_pred CcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040846 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLS 81 (166)
Q Consensus 2 FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G 81 (166)
|||+|++|+++|||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.||||+|+|
T Consensus 16 FWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~G 95 (174)
T COG0225 16 FWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRG 95 (174)
T ss_pred ccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheecCCCCCCccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCHHHHHHHHHHHHHHHhh--cCCceEEEEEecCCCccccchhHHHHHHhCCcccccc
Q 040846 82 THLKSAIYYCNEEERKQAQESKIRRQMK--LNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCES 146 (166)
Q Consensus 82 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~--~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~ 146 (166)
+||||+||++|++|+++|+++++++++. +++||+|||+|+. +||+||||||+||+|||.+||++
T Consensus 96 tqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~-~Fy~AEeYHQ~Yl~KNP~gY~~~ 161 (174)
T COG0225 96 TQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAK-NFYPAEEYHQDYLKKNPNGYCHI 161 (174)
T ss_pred ccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccc-cCcccHHHHHHHHHhCCCCceee
Confidence 9999999999999999999999999883 6779999999999 99999999999999999999997
No 2
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=3.6e-67 Score=418.24 Aligned_cols=154 Identities=36% Similarity=0.612 Sum_probs=145.2
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
-|||+|+.|+++|||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.|+||+|+
T Consensus 12 CFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~~~hDPt~~~~Qg~D~ 91 (172)
T PRK14054 12 CFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFFQIHDPTTLNRQGNDR 91 (172)
T ss_pred ChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHHHhCCCCccCCCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHhh--cCCceEEEEEecCCCccccchhHHHHHHhCCcccccc-cccCChhHH
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQMK--LNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCES-LSLRSTVQF 155 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~~--~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~-~~~~~~~~~ 155 (166)
|+||||+||++|++|+++|++++++++++ ++++|+|+|+|++ +||+||+|||+||+|||.++|+. ...+..+.+
T Consensus 92 G~qYRS~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~Tei~~~~-~Fy~AEeyHQ~Yl~k~p~~~~~~~~~~~~~~~~ 168 (172)
T PRK14054 92 GTQYRSAIFYHDEEQKEIAEASIAELQASGLFDKPIVTEVEPAE-TFYEAEEYHQDYLEKNPNGYCCIFVIPPKVLKK 168 (172)
T ss_pred CcCceeEEEeCCHHHHHHHHHHHHHHHHhcccCCCcEEEEecCC-CceECHHHHHHHHHhCCCCcceeeccCHHHHHH
Confidence 99999999999999999999999999976 7899999999999 99999999999999999987765 444544333
No 3
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=5e-67 Score=421.66 Aligned_cols=162 Identities=33% Similarity=0.547 Sum_probs=150.3
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
-|||+|+.|+++|||++|+|||+||.++||||++||+|+|||+|+|+|+|||++|||++||++||++||||+.||||+|+
T Consensus 17 CFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~LL~~Ff~~hDPt~~~~Qg~D~ 96 (186)
T PRK13014 17 CFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENLLQIFFSTHDPTQLNRQGPDR 96 (186)
T ss_pred CceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHHHHHHHHhcCCCccCCCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHhh--cCCceEEEEEecCCCccccchhHHHHHHhCCc-ccccccccCChhHHHh
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQMK--LNKRIVTKIIQFDSEFCMAENQFQKYYLQKCC-RLCESLSLRSTVQFVE 157 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~~--~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~-~~c~~~~~~~~~~~~~ 157 (166)
|+||||+||++|++|+++|++++++++++ ++++|+|+|+|++ +||+||+|||+||+|||. +||+....|..+.+ +
T Consensus 97 G~QYRS~If~~~~eQ~~~a~~~~~~~~~~~~~~~~i~Tei~p~~-~Fy~AEeyHQ~Yl~k~p~~~yc~~~~~~~~~~~-~ 174 (186)
T PRK13014 97 GEQYRSAIFYHDEEQKKVAEAYIAQLDEAGIFKKPIVTPIKPYK-NFYPAEDYHQDYLKKNPTHPYIVYNDLPKGSGL-K 174 (186)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhccccCCCcEEEEecCC-CeeeCHHHHHHHHHhCCCCCccEEEeChhhhhH-H
Confidence 99999999999999999999999999764 6899999999999 999999999999999999 79998776655444 3
Q ss_pred hhhhhhh
Q 040846 158 SNIACKL 164 (166)
Q Consensus 158 s~~aarL 164 (166)
..+..+|
T Consensus 175 ~~~~~~~ 181 (186)
T PRK13014 175 AFFESHY 181 (186)
T ss_pred HHHHHHh
Confidence 4444443
No 4
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=100.00 E-value=3.4e-66 Score=404.49 Aligned_cols=139 Identities=44% Similarity=0.689 Sum_probs=136.4
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
-|||+|+.|++++||++|+|||+||..+||||++||+|+|||+|+|+|+|||++|||++||++||++||||+.|+||+|+
T Consensus 9 CFWg~E~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~E~V~V~yDp~~is~~~Ll~~f~~~hdPt~~~~Qg~d~ 88 (149)
T TIGR00401 9 CFWGVEKYFWLIPGVYSTAVGYTGGYTPNPTYEEVCSGDTGHAEAVQVTYDPKVISYEELLDVFWEIHDPTQGNRQGNDI 88 (149)
T ss_pred CchhhHHHHhcCCCEEEEEEeeCCCCCCCCChhhcccCCCCceEEEEEEECCCcCcHHHHHHHHHHhCCCCcCCCCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHh--hcCCceEEEEEecCCCccccchhHHHHHHhCC
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQM--KLNKRIVTKIIQFDSEFCMAENQFQKYYLQKC 140 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~--~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p 140 (166)
|+||||+||++|++|+++|+++++++++ .++++|+|+|+|++ +||+||+|||+||+|||
T Consensus 89 G~qYRs~If~~~~~q~~~a~~~~~~~~~~~~~~~~i~tei~~~~-~Fy~AE~yHQ~Yl~k~p 149 (149)
T TIGR00401 89 GTQYRSGIYYHSDEQEKAARASKERLQAAANYGDPIVTEIEPAE-NFYYAEEYHQQYLKKNP 149 (149)
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHHhcccCCCeEEEEecCC-CeeecHHHHHHHHhhCc
Confidence 9999999999999999999999999998 47889999999999 99999999999999998
No 5
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=100.00 E-value=1.3e-66 Score=409.10 Aligned_cols=145 Identities=44% Similarity=0.690 Sum_probs=136.1
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
.|||+|++|+++|||++|+|||+||..+||||++||+|+|||+|||+|+|||++|||++||++||++||||+.||||+|+
T Consensus 9 CFW~~e~~f~~~~GV~~t~vGYagG~~~~PtY~~v~~g~tgh~E~V~V~yD~~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 88 (155)
T PF01625_consen 9 CFWGVEAAFRRLPGVISTRVGYAGGTTPNPTYRQVCSGRTGHAEAVRVTYDPSVISYEELLDVFFRIHDPTQVNGQGNDR 88 (155)
T ss_dssp SHHHHHHHHHTSTTEEEEEEEEESSSSSS--HHHHHTTTTT-EEEEEEEEETTTS-HHHHHHHHHHHS-TTSTSEETTEE
T ss_pred CCeEhHHHHhhCCCEEEEEecccCCCCCCCcceeeecCCCCCeEEEEEEECCCcccHHHHHHHHHHhcCCcccccccCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHhh-cCCceEEEEEecCCCccccchhHHHHHHhCCcccccc
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQMK-LNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCES 146 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~~-~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~ 146 (166)
|+||||+||++|++|+++|++++++++++ ++++|+|+|+|++ +||+||+|||+||+|||.+||+.
T Consensus 89 G~qYrs~If~~~~~q~~~a~~~~~~~~~~~~~~~i~tei~p~~-~Fy~AE~yHQ~Yl~k~p~~yc~~ 154 (155)
T PF01625_consen 89 GTQYRSAIFYHDEEQKKIAEASIAELQAKRFGRPIVTEIEPLK-NFYPAEEYHQKYLEKNPNGYCHY 154 (155)
T ss_dssp SGGG-EEEEESSHHHHHHHHHHHHHHHHHTTSSSBS-EEEECE-EEEEHHGGGTTHHHHSTTSTTSS
T ss_pred cccceeEEecCCHHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-cEEECHHHHHHHHHhCCcccEec
Confidence 99999999999999999999999999999 8999999999999 99999999999999999999985
No 6
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=4.6e-65 Score=417.11 Aligned_cols=147 Identities=39% Similarity=0.598 Sum_probs=142.1
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
-|||+|+.|++++||++|+|||+||..+||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.||||+|+
T Consensus 54 CFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff~~hDPt~~n~QG~D~ 133 (213)
T PRK00058 54 CFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFWENHDPTQGMRQGNDV 133 (213)
T ss_pred CcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHHhcCCcccCCCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHhhc----CCceEEEEEecCCCccccchhHHHHHHhCCcccccccc
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQMKL----NKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLS 148 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~----~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~~~ 148 (166)
|+||||+|||+|++|+++|+++++++++++ .++|+|+|+|++ .||+||+|||+||+|||.+||++..
T Consensus 134 G~QYRS~Ify~~~eQ~~~a~~~~~~~~~~~~~~~~~~i~TeI~~~~-~Fy~AEeyHQ~Yl~k~p~~yc~~~~ 204 (213)
T PRK00058 134 GTQYRSAIYTLTPEQLAAAEASREAYQQALAAAGDGPITTEIAPAP-PFYYAEDYHQQYLAKNPNGYCGLGG 204 (213)
T ss_pred CcCceEEEEeCCHHHHHHHHHHHHHHHHHhhhccCCCeEEEEecCC-CcccCHHHHHHHHHhCCCCccccCC
Confidence 999999999999999999999999998865 258999999999 9999999999999999999999754
No 7
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-64 Score=398.40 Aligned_cols=147 Identities=42% Similarity=0.674 Sum_probs=143.4
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
.|||+|.+|++||||++|+|||+||.+.||||++||+|+|||+|+|+|.|||..|||++||++||++||||+.|+||+|+
T Consensus 33 CFWg~E~a~~~l~gV~~T~vGYagG~~~nPtYk~vc~~tT~HaEvvrV~ydpk~~sy~~Lld~Fw~~HdPtt~n~QG~D~ 112 (191)
T KOG1635|consen 33 CFWGVELAYQRLPGVVRTEVGYAGGITDNPTYKDVCSGTTNHAEVVRVQYDPKVISYEELLDFFWSRHDPTTLNRQGNDV 112 (191)
T ss_pred chhhHHHHHhhcCCeEEEeecccCCccCCcchhhhccCCCCcceEEEEEeCcccccHHHHHHHHHHcCCchhhhccCCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHhhcCCceEEEEEecCCCccccchhHHHHHHhCC-cccccccc
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKC-CRLCESLS 148 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p-~~~c~~~~ 148 (166)
|+||||+||++++||.++|+.++++.|+++.++|+|+|+|+. .||.||||||+||.||| .+||....
T Consensus 113 GtQYRS~I~~~s~eq~k~A~~s~e~~Q~k~~~kI~T~I~p~~-kFY~AE~yHQqYl~K~~~~Gy~~s~~ 180 (191)
T KOG1635|consen 113 GTQYRSGIYTYSPEQEKLARESKEREQKKWNGKIVTEILPAK-KFYRAEEYHQQYLSKNPRNGYAQSTH 180 (191)
T ss_pred cceeeeeeeeCCHHHHHHHHHHHHHHHhccCCcceEEEeecc-chhhchHHHHHHHhhCCCCccccccC
Confidence 999999999999999999999999999999999999999999 99999999999999999 68887654
No 8
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=100.00 E-value=4.3e-62 Score=383.76 Aligned_cols=139 Identities=19% Similarity=0.301 Sum_probs=133.7
Q ss_pred CcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040846 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLS 81 (166)
Q Consensus 2 FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G 81 (166)
|||+|+.|+++|||++|+|||+||..+||+ +|.|||+|+|+|+|||++|||++||++||++||||+.||||+|+|
T Consensus 11 FWg~E~~f~~l~GV~~t~vGYagG~~~~p~-----~~~tgH~E~V~V~yDp~~isy~~LL~~f~~~hdPt~~~~Qg~D~G 85 (156)
T PRK05528 11 LWGVQAFFKTLPGVIHTEAGRANGRTSTLD-----GPYDGYAECVKTHFDPRMVSITDLMGYLFEIIDPYSVNKQGNDVG 85 (156)
T ss_pred chhhHHHHhcCCCEEEEEEEcCCCCCCCCC-----CCCCCcEEEEEEEECCCcCCHHHHHHHHHHhCCcccccccCCCCC
Confidence 999999999999999999999999999986 788999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCHHHHHHHHHHHHHHHhhcCCceEEEEEecCCCccccchhHHHHHHhCCcccccccc
Q 040846 82 THLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLS 148 (166)
Q Consensus 82 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~~~ 148 (166)
+||||+||++|++|+++|+++++++++ .++|+|+|+|++ +||+||+|||+||+|||.+||++..
T Consensus 86 ~QYRS~If~~d~eQ~~~a~~~~~~~~~--~~~i~Tei~~~~-~Fy~AE~yHQ~Yl~k~p~~yc~~~~ 149 (156)
T PRK05528 86 EKYRTGIYSEVDDHLIEARQFIERRED--ADKIAVEVLPLT-NYVKSAEEHQDRLEKFPEDYCHIPK 149 (156)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhc--CCCeEEEEecCC-CeeecHHHHHHHHHhCCCCCcccCh
Confidence 999999999999999999999998876 478999999999 9999999999999999999998743
No 9
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional
Probab=100.00 E-value=2.9e-61 Score=409.05 Aligned_cols=146 Identities=36% Similarity=0.619 Sum_probs=140.9
Q ss_pred CCcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCC
Q 040846 1 NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGL 80 (166)
Q Consensus 1 ~FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~ 80 (166)
-|||+|+.|++++||++|+|||+||.++||||++||+|.|||+|||+|+|||++|||++||++||++||||+.|+||+|+
T Consensus 136 CFWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~VcsG~tgH~EaV~V~yDp~~isy~~LL~~F~~~hDPt~~~~Qg~D~ 215 (283)
T PRK05550 136 CFWGVEYYFKKLPGVLSVESGYTGGDTKNPTYEQVCSGTTGHAEAVRVEFDPAKISYETLLKVFFEIHDPTQLNRQGPDI 215 (283)
T ss_pred CchhhhhhHhhCcCEEEEEEeeCCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHHhhcCCCccCCCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeccCCHHHHHHHHHHHHHHHhhcCCceEEEEEecCCCccccchhHHHHHHhCCcc-cccccc
Q 040846 81 STHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCR-LCESLS 148 (166)
Q Consensus 81 G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~-~c~~~~ 148 (166)
|+||||+||++|++|+++|++++++++++. ++|+|+|+|++ +||+||+|||+||+|||.+ ||++..
T Consensus 216 G~QYRS~If~~d~eq~~~A~~~~~~~~~~~-~~i~TeI~~l~-~Fy~AEeyHQ~Yl~k~p~~~yc~~~~ 282 (283)
T PRK05550 216 GTQYRSAIFYHDDEQKQIAEKLIAELTKKG-YPVVTEVEAAG-PFYPAEDYHQDYYEKHGKQPYCHIVV 282 (283)
T ss_pred CcCceEEEEeCCHHHHHHHHHHHHHHHhcC-CceEEEEeeCC-CeeECHHHHHHHHHhCCCCCeeeeeC
Confidence 999999999999999999999999999853 49999999999 9999999999999999996 998753
No 10
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=100.00 E-value=5.2e-60 Score=429.04 Aligned_cols=147 Identities=28% Similarity=0.498 Sum_probs=143.7
Q ss_pred CcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040846 2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLS 81 (166)
Q Consensus 2 FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G 81 (166)
|||+|++|++++||++|+||||||.++||||++||+| |||+|+|+|+|||++|||++||++||++||||+.||||+|+|
T Consensus 208 FWg~e~~f~~~~GV~~t~~GYagG~~~~PtY~~Vc~g-tgH~E~V~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G 286 (521)
T PRK14018 208 FWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVYRH-SGHAETVKVTYDADKLSLDTILQYYFRVVDPTSLNKQGNDTG 286 (521)
T ss_pred chhhHHHHccCCCEEEEEEeeCCCCCCCCChhhccCC-CCcEEEEEEEECCCcCcHHHHHHHHHHhCCCccccccCCCCC
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCCHHHHHHHHHHHHHHHhhcCCceEEEEEecCCCccccchhHHHHHHhCCcccccccccC
Q 040846 82 THLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLR 150 (166)
Q Consensus 82 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~~~~~ 150 (166)
+||||+|||+|++|+++|++++++++++++++|+|+|+|++ +||+||+|||+||+|||.+||++...+
T Consensus 287 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~tei~~~~-~Fy~AE~yHQ~Yl~k~p~~yc~~~~~~ 354 (521)
T PRK14018 287 TQYRSGVYYTDPADKAVIAAALKREQQKYQLPLVVENEPLK-NFYDAEEYHQDYLIKNPNGYCHIDLRK 354 (521)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHHHcCCCeEEEEecCC-CeeecHHHHHHHHHhCCCceeEeeccc
Confidence 99999999999999999999999999999999999999999 999999999999999999999985543
No 11
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=93.10 E-value=0.26 Score=31.79 Aligned_cols=42 Identities=24% Similarity=0.355 Sum_probs=35.3
Q ss_pred chhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHH
Q 040846 4 DLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIF 64 (166)
Q Consensus 4 ~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f 64 (166)
-++..+.++|||.++.+=+..+ -|.|.||+..++.++|.+..
T Consensus 15 ~v~~~l~~~~GV~~v~vd~~~~-------------------~v~v~~~~~~~~~~~i~~~i 56 (62)
T PF00403_consen 15 KVEKALSKLPGVKSVKVDLETK-------------------TVTVTYDPDKTSIEKIIEAI 56 (62)
T ss_dssp HHHHHHHTSTTEEEEEEETTTT-------------------EEEEEESTTTSCHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCC-------------------EEEEEEecCCCCHHHHHHHH
Confidence 4688899999999999977655 37799999999999988754
No 12
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=84.95 E-value=2.6 Score=28.52 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=35.5
Q ss_pred hhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHH
Q 040846 5 LESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDI 63 (166)
Q Consensus 5 ~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~ 63 (166)
++..+..++||.++.+-...|. +.|+||+..++-++|.+.
T Consensus 20 V~~al~~v~gv~~v~v~l~~~~-------------------~~V~~d~~~~~~~~i~~a 59 (71)
T COG2608 20 VEKALEEVDGVASVDVDLEKGT-------------------ATVTFDSNKVDIEAIIEA 59 (71)
T ss_pred HHHHHhcCCCeeEEEEEcccCe-------------------EEEEEcCCcCCHHHHHHH
Confidence 5678899999999999888774 789999999999999987
No 13
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 1 of allophanate hydrolase (AHS1), which is found in urea carboxylase.; PDB: 3VA7_A 3MML_H 3OEP_A 3OPF_C 3ORE_A 2ZP2_A 2KWA_A 2PHC_B.
Probab=81.48 E-value=2 Score=35.08 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=41.2
Q ss_pred hhhhhcc--CCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 040846 5 LESAFGR--LNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLST 82 (166)
Q Consensus 5 ~E~~f~~--l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G~ 82 (166)
..+.+.+ ++||++++.+|. .|-|.|||..+++.+|++..-....-... .-...++
T Consensus 30 l~~~l~~~~~~gi~e~vp~~~---------------------sllV~fdp~~~~~~~l~~~l~~~~~~~~~--~~~~~~r 86 (202)
T PF02682_consen 30 LARALRAAPLPGIVEVVPAYR---------------------SLLVHFDPLRIDRAALRAALEELLASPQP--SEKPPSR 86 (202)
T ss_dssp HHHHHHHHT-TTEEEEEEESS---------------------EEEEEESTTTSHHHHHHHHHHHHHCCCCS--SCCCCEE
T ss_pred HHHHHhcCCCCCeEEeecccc---------------------EEEEEEcCCcCCHHHHHHHHHHhhhhccc--cccCCCc
Confidence 3344555 899999998875 37799999999999998877555332111 0112233
Q ss_pred CceeeeccC
Q 040846 83 HLKSAIYYC 91 (166)
Q Consensus 83 qYrs~I~~~ 91 (166)
..+-=|.|.
T Consensus 87 ~~~iPV~Y~ 95 (202)
T PF02682_consen 87 LIEIPVCYD 95 (202)
T ss_dssp EEEEEEEES
T ss_pred eEEEEEEEC
Confidence 466667776
No 14
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]
Probab=80.02 E-value=2.2 Score=35.77 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=30.4
Q ss_pred cchhhhhccC--CCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHH
Q 040846 3 LDLESAFGRL--NGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDI 63 (166)
Q Consensus 3 W~~E~~f~~l--~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~ 63 (166)
|++...+..- +||++++.||. .+.|.||+.+++..+|++.
T Consensus 26 ~al~~~l~~~~~~gvve~vP~~~---------------------sllv~~d~~~~~~~~l~~~ 67 (223)
T COG2049 26 WALARALEAAPLPGVVEIVPGYR---------------------SLLVIYDPPRLDPQELLER 67 (223)
T ss_pred HHHHHHHHhcCCCCeEEecccce---------------------eEEEEecccccCHHHHHHH
Confidence 4444555554 59999998886 3789999999998887764
No 15
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=74.47 E-value=12 Score=38.42 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=43.8
Q ss_pred CCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcC---CCCCCCCCCCCCCCCceeee
Q 040846 12 LNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETH---DPTNRNYLNFGLSTHLKSAI 88 (166)
Q Consensus 12 l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~---dPt~~~~Qg~d~G~qYrs~I 88 (166)
++||++++.||. ++.|.|||.+++..+|+...-... ++... . ...++..+-=|
T Consensus 842 ~~gi~e~vP~~~---------------------Sl~v~~dp~~~~~~~l~~~l~~~~~~~~~~~~-~--~~~~r~v~iPv 897 (1201)
T TIGR02712 842 LPGIIDLTPGIR---------------------SLQIHYDPRVISQSELLEVLVAIEEQLPAAED-L--QVPSRIVHLPL 897 (1201)
T ss_pred CCCeEEeccccE---------------------EEEEEECCCCCCHHHHHHHHHHHHhhcccccc-c--CCCCcEEEEEe
Confidence 688988887764 478999999999999987653322 22111 0 11234555667
Q ss_pred ccCCHHHHHHHHHHHH
Q 040846 89 YYCNEEERKQAQESKI 104 (166)
Q Consensus 89 ~~~~~eq~~~a~~~~~ 104 (166)
.|.++.-++.+++.++
T Consensus 898 ~y~~~~~~~~~~ry~~ 913 (1201)
T TIGR02712 898 SWEDPATLLAVERYME 913 (1201)
T ss_pred EECCHHHHHHHHHHHh
Confidence 7777766555555544
No 16
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=65.36 E-value=11 Score=30.74 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=36.6
Q ss_pred CCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhc-CCCCCCCCCCCCCCCCceeeecc
Q 040846 12 LNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWET-HDPTNRNYLNFGLSTHLKSAIYY 90 (166)
Q Consensus 12 l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~-~dPt~~~~Qg~d~G~qYrs~I~~ 90 (166)
++||++++.+|. .|.|.|||.+++..+|++..=.. .++... .....++..+-=|.|
T Consensus 39 ~~gi~e~vp~~~---------------------sllv~fdp~~~~~~~l~~~l~~~~~~~~~~--~~~~~~r~~~IPV~Y 95 (201)
T smart00796 39 LPGVVELVPGYR---------------------SLLVHFDPLVIDPAALLARLRALEALPLAE--ALEVPGRIIEIPVCY 95 (201)
T ss_pred CCCeEEccccce---------------------EEEEEEcCCCCCHHHHHHHHHHHHhccccc--ccCCCCcEEEEeeEe
Confidence 578888876653 47799999999999888754222 121011 112334566666777
Q ss_pred CCH
Q 040846 91 CNE 93 (166)
Q Consensus 91 ~~~ 93 (166)
.++
T Consensus 96 ~~~ 98 (201)
T smart00796 96 GGE 98 (201)
T ss_pred CCC
Confidence 754
No 17
>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]
Probab=61.36 E-value=20 Score=29.69 Aligned_cols=59 Identities=20% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCCC---CCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhcCCceE
Q 040846 57 YKSLCDIFWETHDPTNRNY---LNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIV 115 (166)
Q Consensus 57 ~~~Ll~~f~~~~dPt~~~~---Qg~d~G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~ 115 (166)
+..||-.+++++|||...- .++.+..-||-+||.-+...++...+...++.+-++-+++
T Consensus 132 l~tlla~igeT~Dp~~~ei~GvV~n~rkgfyKlAiWtr~~~n~dvl~~ig~efk~vl~ls~~ 193 (217)
T COG5053 132 LRTLLAAIGETLDPTGSEIGGVVGNMRKGFYKLAIWTRNCNNKDVLGAIGNEFKQVLELSDV 193 (217)
T ss_pred HHHHHHHHhhccCCCCCeeccEEEEeecCceEEEEEecCCCcHHHHHHHHHHHHhcccccce
Confidence 4567778899999975432 2567778999999999999888888888887765443333
No 18
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=51.71 E-value=8.6 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=14.6
Q ss_pred CCcEEEEEEEEcCCCCCHHHHHHHHHhcCCC
Q 040846 40 TGHTEAVKVFYDKQTISYKSLCDIFWETHDP 70 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dP 70 (166)
.|.+-.-.|.|||+++|-++||+.+ +-..|
T Consensus 32 NgYar~g~VifDe~kl~~e~lL~~l-e~~kp 61 (88)
T PF11491_consen 32 NGYARNGFVIFDESKLSKEELLEML-EEFKP 61 (88)
T ss_dssp -TTSS--EEE--B-S-SHHHH---H-HHTTT
T ss_pred cccccceEEEECcccCCHHHHHHHH-HhcCh
Confidence 3456666899999999999999764 33444
No 19
>PRK14626 hypothetical protein; Provisional
Probab=48.63 E-value=12 Score=27.98 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=22.3
Q ss_pred eeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCC
Q 040846 18 TATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTIS 56 (166)
Q Consensus 18 t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is 56 (166)
+..|-+||..- +-+. +|+.|++.|..||+.++
T Consensus 32 ~v~g~sggG~V----kV~~---nG~~ev~~i~Id~~ll~ 63 (110)
T PRK14626 32 EIVVEVGGGMV----KVVS---NGLGEIKDVEIDKSLLN 63 (110)
T ss_pred EEEEEecCcEE----EEEE---ECCccEEEEEECHHHcC
Confidence 45667766321 1122 68899999999999985
No 20
>PRK14624 hypothetical protein; Provisional
Probab=47.49 E-value=12 Score=28.19 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=26.2
Q ss_pred eeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCC------HHHHHHH
Q 040846 18 TATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTIS------YKSLCDI 63 (166)
Q Consensus 18 t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is------~~~Ll~~ 63 (166)
+..|-+||..-.-+ -+|..|.+.|..||+.+. +++|+-.
T Consensus 33 ~v~g~sGgG~VkV~-------~nG~~~i~~i~Idp~lld~eD~E~LeDLI~a 77 (115)
T PRK14624 33 RVVGDAGAGMVTVT-------ATGEGQITNVFINKQLFDADDNKMLEDLVMA 77 (115)
T ss_pred EEEEEECCcEEEEE-------EEcCccEEEEEECHHHcCcccHHHHHHHHHH
Confidence 56677766321111 267899999999999995 5555543
No 21
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=45.28 E-value=64 Score=22.75 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCceEEEEEecCCCccccchhHHHHHHhCC
Q 040846 91 CNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKC 140 (166)
Q Consensus 91 ~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p 140 (166)
.+++++....+.++++++..+..|++.+.+-- .-..+++|=++++.++.
T Consensus 2 Ls~~~~~~l~~~l~~~~~~t~~~i~Vvtv~~~-~~~~~~~~A~~~~~~~~ 50 (119)
T PF04536_consen 2 LSQEERERLNQALAKLEKKTGVQIVVVTVPSL-PGQDIEDYAQQLFERWG 50 (119)
T ss_dssp S-HHHHHHHHHHHHHHHHHC--EEEEEEESB--TTS-HHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCC-CCCCHHHHHHHHHHHhC
Confidence 46888899999999999988888877776654 55889999999999854
No 22
>PRK14627 hypothetical protein; Provisional
Probab=42.63 E-value=23 Score=25.86 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=15.4
Q ss_pred CCcEEEEEEEEcCCCCC
Q 040846 40 TGHTEAVKVFYDKQTIS 56 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is 56 (166)
+|..|.+.|..||+.+.
T Consensus 43 ~G~~~v~~i~Idp~ll~ 59 (100)
T PRK14627 43 NGHREVQSITISPEVVD 59 (100)
T ss_pred EcCccEEEEEECHHHcC
Confidence 68899999999999985
No 23
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=40.76 E-value=37 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=21.6
Q ss_pred CCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHH
Q 040846 13 NGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIF 64 (166)
Q Consensus 13 ~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f 64 (166)
+||++++.||. .|.|.|||..+ ..+|+...
T Consensus 33 ~gi~e~vP~~~---------------------sllv~fdp~~~-~~~l~~~l 62 (202)
T TIGR00370 33 PGFVECIPGMN---------------------NLTVFYDMYEV-YKHLPQRL 62 (202)
T ss_pred CCcEEeecccE---------------------EEEEEECchhh-HHHHHHHH
Confidence 78888876653 36799999987 56666543
No 24
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=38.42 E-value=66 Score=22.07 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=37.8
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCCCCCCCC-----CCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhcCCceEEEE
Q 040846 48 VFYDKQTISYKSLCDIFWETHDPTNRNYL-----NFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKI 118 (166)
Q Consensus 48 V~yDp~~is~~~Ll~~f~~~~dPt~~~~Q-----g~d~G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~teI 118 (166)
|.||.++-||+..++.+-+..+.+..... =+..| |+.|+..+.++.+.....+.+..+..+-|+.++|
T Consensus 10 vL~NDe~ht~~~Vi~~L~~~~~~s~~~A~~~a~~v~~~G---~avv~~~~~e~ae~~~~~l~~~g~~~~~PL~~ti 82 (82)
T PF02617_consen 10 VLWNDEVHTFEQVIDVLRRVFGCSEEQARQIAMEVHREG---RAVVGTGSREEAEEYAEKLQRAGRDSGHPLRATI 82 (82)
T ss_dssp EEE--SSSBHHHHHHHHHHHC---HHHHHHHHHHHHHHS---EEEEEEEEHHHHHHHHHHHHHHHHHTT---EEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHhHcC---CEeeeeCCHHHHHHHHHHHHHHhhccCCCeEEeC
Confidence 78999999999999998888765422110 01122 4677777766666666555555544556666554
No 25
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.11 E-value=34 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.8
Q ss_pred CCcEEEEEEEEcCCCCC
Q 040846 40 TGHTEAVKVFYDKQTIS 56 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is 56 (166)
+|+-|++.|..||+.+.
T Consensus 47 ~G~~ev~~v~Idp~l~d 63 (105)
T COG0718 47 NGKGEVKSVEIDPSLLD 63 (105)
T ss_pred eCCCcEEEEEeCHHHcC
Confidence 78899999999999997
No 26
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.45 E-value=54 Score=31.95 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=34.3
Q ss_pred cchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCC-HHHHHHHH
Q 040846 3 LDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTIS-YKSLCDIF 64 (166)
Q Consensus 3 W~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is-~~~Ll~~f 64 (166)
|-+| .+.++|||.+..+-++ +|.+.|.||+..++ .+++...-
T Consensus 18 ~~ie-~l~~~~gV~~~~vn~~-------------------t~~~~v~~~~~~~~~~~~~~~~v 60 (713)
T COG2217 18 SRIE-ALNKLPGVEEARVNLA-------------------TERATVVYDPEEVDLPADIVAAV 60 (713)
T ss_pred HHHH-HHhcCCCeeEEEeecc-------------------cceEEEEecccccccHHHHHHHH
Confidence 5578 8999999999999877 56688999998887 67776654
No 27
>KOG4309 consensus Transcription mediator-related factor [Transcription]
Probab=31.19 E-value=51 Score=27.06 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=31.1
Q ss_pred EEEEEEEcCCCCC------HHHHHHHHHhcCCCCCCCCCCCCCCCCceeeeccCCH
Q 040846 44 EAVKVFYDKQTIS------YKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNE 93 (166)
Q Consensus 44 EaV~V~yDp~~is------~~~Ll~~f~~~~dPt~~~~Qg~d~G~qYrs~I~~~~~ 93 (166)
=+|+|+|||.+|- .-+.|.-||-.|-|+... -.|-+=...||-.-+
T Consensus 140 i~vEIEY~pcvI~~~Cw~M~~Eflqsflg~~~p~aP~----~fg~t~h~~~y~p~D 191 (217)
T KOG4309|consen 140 ISVEIEYGPCVIASDCWSMLLEFLQSFLGSHTPGAPA----VFGNTRHDAVYGPAD 191 (217)
T ss_pred EEEEEeeCCEEEhHHHHHHHHHHHHHHhcccCCCchH----hhcCccCccccCcHH
Confidence 5799999999984 456777788888887542 334444455555433
No 28
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=27.61 E-value=92 Score=31.28 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=40.3
Q ss_pred ceEeeeeecCCcC-CCCCchhhcc--------CCCCcEEEEEEEEcCCCCCHHHHHHHHHhc
Q 040846 15 VMRTATGYCGGTL-KKPTYREVCE--------GITGHTEAVKVFYDKQTISYKSLCDIFWET 67 (166)
Q Consensus 15 V~~t~~GYagG~~-~~PtY~~Vc~--------g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~ 67 (166)
|..++|||.+|.. -|||+++.-. |+.+ ..|.|.-+-..+|-++|++..-..
T Consensus 224 VaAVrVG~idg~~VlnPt~~E~~~s~ldLvvagt~~--~IvMIE~~a~e~see~l~~Al~~a 283 (891)
T PLN00207 224 IAGVRVGLIGGKFIVNPTTKEMEESELDLIMAGTDS--AILMIEGYCNFLPEEKLLEAVEVG 283 (891)
T ss_pred eEEEEEEEECCEEEECCCHHHHhcCCeeEEEEEcCC--eEEEEEcCCCCCCHHHHHHHHHHH
Confidence 8899999999964 7999998764 4322 588999999999999888775433
No 29
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=26.89 E-value=1e+02 Score=23.57 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=23.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCceEEEEEecC
Q 040846 90 YCNEEERKQAQESKIRRQMKLNKRIVTKIIQFD 122 (166)
Q Consensus 90 ~~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~ 122 (166)
.-|+.+++.|-..+.++....++|++++|.|-+
T Consensus 2 Lr~~~~r~~a~~~I~~~p~d~~~p~~v~i~~~~ 34 (127)
T PF05772_consen 2 LRNERIRQNAIQAIKQLPADDGKPLVVTIKPPK 34 (127)
T ss_dssp ESSHHHHHHHHHHHHT----SSS-EEEEEEE-S
T ss_pred CcCHHHHHHHHHHHHhcCcCCCCCEEEEeeCCC
Confidence 357888899999998887656799999999965
No 30
>PRK14622 hypothetical protein; Provisional
Probab=25.68 E-value=50 Score=24.22 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.3
Q ss_pred CCcEEEEEEEEcCCCCC
Q 040846 40 TGHTEAVKVFYDKQTIS 56 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is 56 (166)
+|+.|++.|..||+.+.
T Consensus 43 nG~~~v~~i~Idp~~l~ 59 (103)
T PRK14622 43 NGKCEVTRLTVDPKAVD 59 (103)
T ss_pred EcCceEEEEEECHHHcC
Confidence 68899999999999884
No 31
>PF04990 RNA_pol_Rpb1_7: RNA polymerase Rpb1, domain 7; InterPro: IPR007073 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). This domain, domain 7, represents a mobile module of the RNA polymerase. Domain 7 interacts with the lobe domain of Rpb2 (IPR007642 from INTERPRO) [, ].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_M 1Y77_A 3CQZ_A 3GTM_A 1TWA_A 4A3I_A 2NVY_A 2NVT_A 1I6H_A 1TWF_A ....
Probab=24.54 E-value=37 Score=26.11 Aligned_cols=27 Identities=19% Similarity=0.539 Sum_probs=20.9
Q ss_pred EEEEEEEEcCCCCCH-----HHHHHHHHhcCC
Q 040846 43 TEAVKVFYDKQTISY-----KSLCDIFWETHD 69 (166)
Q Consensus 43 ~EaV~V~yDp~~is~-----~~Ll~~f~~~~d 69 (166)
+...+|.|||+.-+= .++++.||..-|
T Consensus 7 t~~teIyYDPdp~~Tvi~eD~e~V~~y~e~pd 38 (135)
T PF04990_consen 7 TASTEIYYDPDPRNTVIEEDREFVESYFEIPD 38 (135)
T ss_dssp ECEEEEEE-SSTTSSSSSTTHCHHHHCCCTT-
T ss_pred hhheeEEECCCCCCCcchhhHHHHHHHHhCCC
Confidence 567899999998654 679999999876
No 32
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=23.82 E-value=55 Score=25.29 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=31.1
Q ss_pred hhhhhccC--CCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHH
Q 040846 5 LESAFGRL--NGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFW 65 (166)
Q Consensus 5 ~E~~f~~l--~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~ 65 (166)
+++++..| .|++.+.-|=-|| .++.-+|+.||+.++++.+=
T Consensus 41 L~kIl~~L~~aGlv~S~rG~~GG--------------------y~La~~p~eItl~dIi~ave 83 (153)
T PRK11920 41 LFKILQPLVEAGLVETVRGRNGG--------------------VRLGRPAADISLFDVVRVTE 83 (153)
T ss_pred HHHHHHHHHHCCCEEeecCCCCC--------------------eeecCCHHHCcHHHHHHHHc
Confidence 34555555 5888888886666 45888999999999998874
No 33
>PRK03762 hypothetical protein; Provisional
Probab=23.53 E-value=58 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=18.1
Q ss_pred CCcEEEEEEEEcCCCC-CHHHHHHH
Q 040846 40 TGHTEAVKVFYDKQTI-SYKSLCDI 63 (166)
Q Consensus 40 tgh~EaV~V~yDp~~i-s~~~Ll~~ 63 (166)
+|+.|++.|..||+.+ .-+.|-++
T Consensus 47 nG~~~i~~i~Id~~ll~D~e~LeDL 71 (103)
T PRK03762 47 NGKGEVIDISIDDSLLEDKESLQIL 71 (103)
T ss_pred EcCceEEEEEECHHHcCCHHHHHHH
Confidence 6889999999999988 34434333
No 34
>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis. Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.
Probab=23.43 E-value=3.3e+02 Score=21.09 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=32.7
Q ss_pred EEcCCCCCHHHHHHHHHh-cCCCCCCCCCCCCCCCCceeeeccCCHHHHHHHHHH
Q 040846 49 FYDKQTISYKSLCDIFWE-THDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQES 102 (166)
Q Consensus 49 ~yDp~~is~~~Ll~~f~~-~~dPt~~~~Qg~d~G~qYrs~I~~~~~eq~~~a~~~ 102 (166)
.||++.|+-++|-+++-. ..-|+..|.|. -..|.+.+++.++...+.
T Consensus 12 ~F~~~~V~~e~i~~ileaA~~APS~~N~Qp-------w~fvVv~~~~~~~~l~~~ 59 (196)
T cd02145 12 HFFPDPVPEEVLERLLAAAHHAPSVGLSQP-------WRFIRVRDPATRAAIKAL 59 (196)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCcCCCCC-------eEEEEEcCHHHHHHHHHH
Confidence 588889999988888865 46798887554 344556787766644433
No 35
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=22.86 E-value=1.1e+02 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCcEEEEEEEEcCCCCCHHHHHHHHHhc
Q 040846 40 TGHTEAVKVFYDKQTISYKSLCDIFWET 67 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is~~~Ll~~f~~~ 67 (166)
.||+|+|-|.++ ..++.++..+.++..
T Consensus 242 ~GHse~v~ve~~-~~~~~~e~~~~~l~~ 268 (334)
T COG0136 242 YGHSEAVTVEFK-KDVDPEEIREELLPS 268 (334)
T ss_pred cccceEEEEEec-CCCCHHHHHHHHhcc
Confidence 699999999998 568889888777544
No 36
>PRK14625 hypothetical protein; Provisional
Probab=22.86 E-value=59 Score=24.20 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.4
Q ss_pred CCcEEEEEEEEcCCCCC
Q 040846 40 TGHTEAVKVFYDKQTIS 56 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is 56 (166)
+|.-|++.|..||+.+.
T Consensus 44 ~G~~~v~~I~Idp~ll~ 60 (109)
T PRK14625 44 MGNGELVRVLMDESLVQ 60 (109)
T ss_pred ecCceEEEEEECHHHcC
Confidence 68899999999999985
No 37
>PRK14621 hypothetical protein; Provisional
Probab=22.57 E-value=61 Score=24.15 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=21.4
Q ss_pred eeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCC
Q 040846 18 TATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTI 55 (166)
Q Consensus 18 t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~i 55 (166)
+..|-+||..-.-+ -+|+-|.+.|..||+.+
T Consensus 31 ~v~g~sGgG~VkV~-------~~G~~~i~~i~Idp~ll 61 (111)
T PRK14621 31 VAHGEAGGGMVKAS-------VNGKQKLLSLAIDPEIM 61 (111)
T ss_pred EEEEEECCceEEEE-------EEcCceEEEEEECHHHc
Confidence 55677766321111 16889999999999987
No 38
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=22.33 E-value=56 Score=31.27 Aligned_cols=87 Identities=10% Similarity=0.148 Sum_probs=54.3
Q ss_pred CcEEEEEEEEcCCCCCHHHHHHHHHhcCC-CCCCCCCCCCCCCCceeeeccCCHHHHHHHHHHHHHHHhhc-CCceEEEE
Q 040846 41 GHTEAVKVFYDKQTISYKSLCDIFWETHD-PTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKL-NKRIVTKI 118 (166)
Q Consensus 41 gh~EaV~V~yDp~~is~~~Ll~~f~~~~d-Pt~~~~Qg~d~G~qYrs~I~~~~~eq~~~a~~~~~~~~~~~-~~~i~teI 118 (166)
.|--+|-|.=.=...+=.+.++..|+.-+ |.-.+=++..-.-=| |=+.++++.++|-..+.+..+.| +|||...|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWy---ITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWY---ITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceE---EEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 45566666555445555666777776633 333322221111111 33457788888888887777776 79999999
Q ss_pred EecCCCccccchh
Q 040846 119 IQFDSEFCMAENQ 131 (166)
Q Consensus 119 ~p~~~~F~~AE~y 131 (166)
++.. .|.+--.|
T Consensus 249 Kain-tf~pkngy 260 (684)
T KOG2591|consen 249 KAIN-TFFPKNGY 260 (684)
T ss_pred hhhh-cccCCCCC
Confidence 9999 88875544
No 39
>PRK00587 hypothetical protein; Provisional
Probab=21.91 E-value=59 Score=23.82 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=15.2
Q ss_pred CCcEEEEEEEEcCCCCC
Q 040846 40 TGHTEAVKVFYDKQTIS 56 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is 56 (166)
+|.-|.+.|..||+.+.
T Consensus 42 nG~~~i~~i~Idp~lld 58 (99)
T PRK00587 42 KGNLNIEKIEINKELID 58 (99)
T ss_pred EcCccEEEEEECHHHcC
Confidence 67889999999999984
No 40
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=21.80 E-value=1.8e+02 Score=21.48 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=38.7
Q ss_pred EEEEEcC--CCCCHHHHHHHHHhcCCCCCCCCCCCCC----C----CCceeeeccCCHHHHHHHHHHHHHHH
Q 040846 46 VKVFYDK--QTISYKSLCDIFWETHDPTNRNYLNFGL----S----THLKSAIYYCNEEERKQAQESKIRRQ 107 (166)
Q Consensus 46 V~V~yDp--~~is~~~Ll~~f~~~~dPt~~~~Qg~d~----G----~qYrs~I~~~~~eq~~~a~~~~~~~~ 107 (166)
|...|+. +.-.|+.+++.|-..++|....--|... | ..|- ..+++||+..++.++...
T Consensus 19 v~~~~~~~~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~vc~~~~g----s~tee~R~~v~~WL~~~~ 86 (101)
T PF04320_consen 19 VSCRFAEGTSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFVCLQRYG----SCTEEDRAAVEAWLKARP 86 (101)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEEEeccCC----CCCHHHHHHHHHHHHhCC
Confidence 5566666 5567999999999999997543222110 0 1222 359999999888887654
No 41
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=21.69 E-value=1.2e+02 Score=26.72 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.5
Q ss_pred CCcEEEEEEEEcCCCCCHHHHHHHHHh
Q 040846 40 TGHTEAVKVFYDKQTISYKSLCDIFWE 66 (166)
Q Consensus 40 tgh~EaV~V~yDp~~is~~~Ll~~f~~ 66 (166)
.||+|+|-|+++.. +|.+++.+.+-.
T Consensus 227 ~GHs~sV~ve~e~~-~~~e~~~~~l~~ 252 (322)
T PRK06901 227 YGLAQMVTALSEYE-LDIESQLAEWQQ 252 (322)
T ss_pred ccEEEEEEEEECCC-CCHHHHHHHHHh
Confidence 79999999999764 999999988754
No 42
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=21.44 E-value=1.1e+02 Score=30.84 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=33.5
Q ss_pred hhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHh
Q 040846 5 LESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWE 66 (166)
Q Consensus 5 ~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~ 66 (166)
+|..+.+++||.+..+-- ++..+.|.|||..++-.++++..=+
T Consensus 164 ie~~l~~l~gV~~~sv~~-------------------~t~~~~V~~~~~~~~pr~i~k~ie~ 206 (951)
T KOG0207|consen 164 IESILERLRGVKSFSVSL-------------------ATDTAIVVYDPEITGPRDIIKAIEE 206 (951)
T ss_pred hHHHHhhccCeeEEEEec-------------------cCCceEEEecccccChHHHHHHHHh
Confidence 567788889988876632 3456779999999999999987644
No 43
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=21.37 E-value=45 Score=21.54 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=9.4
Q ss_pred EEEEEEEcCCCCC
Q 040846 44 EAVKVFYDKQTIS 56 (166)
Q Consensus 44 EaV~V~yDp~~is 56 (166)
+.|.|.|||.-++
T Consensus 36 ~~V~vryDp~dl~ 48 (62)
T PF09299_consen 36 QKVRVRYDPDDLS 48 (62)
T ss_dssp SEEEEEE-GGGTT
T ss_pred CEEEEEECcccCC
Confidence 4499999998764
No 44
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=20.72 E-value=1e+02 Score=30.95 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=36.3
Q ss_pred chhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCC-----CCHHHHHHHHHhcC
Q 040846 4 DLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQT-----ISYKSLCDIFWETH 68 (166)
Q Consensus 4 ~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~-----is~~~Ll~~f~~~~ 68 (166)
-++..+.++|||.++.++ |+ ..+.++|..||++ +|..++....=...
T Consensus 161 ~l~~~L~~i~GV~~V~~~--G~----------------~~~ei~V~vd~~kl~~~gls~~dV~~al~~~~ 212 (1025)
T PRK10614 161 QLAQTISQIDGVGDVDVG--GS----------------SLPAVRVGLNPQALFNQGVSLDDVRQAISNAN 212 (1025)
T ss_pred HHHHHhcCCCCceEEEec--CC----------------CceEEEEEeCHHHHHHcCCCHHHHHHHHHHhC
Confidence 356778999999999874 33 3578999999987 58888887766544
No 45
>PF11591 2Fe-2S_Ferredox: Ferredoxin chloroplastic transit peptide; InterPro: IPR023383 This entry represent the N-terminal transit peptide of a number of algal petF genes. The peptide is removed during transit into the chloroplast lumen. The structure of chloroplast ferredoxin in water is unstructured however in a 30:70 molar-ratio mixture of 2,2,2-trifluoroethanol, residues 3 to 13 form an alpha-helix. The rest of the peptide remains unstructured []. This domain is the N-terminal of the [2Fe-2S), ferredoxin, from, C.reinhardtii:, petF., This, protein, catalyses, the, final, reaction, in, a, pathway, which, allows, the, production, of, H(2), from, water, in, the, chloroplast, ]. ; PDB: 1FCT_A.
Probab=20.09 E-value=56 Score=19.23 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=8.3
Q ss_pred HhhhhhhhhcC
Q 040846 156 VESNIACKLNG 166 (166)
Q Consensus 156 ~~s~~aarLng 166 (166)
++|.+|||.-|
T Consensus 5 ~rssfaarvag 15 (34)
T PF11591_consen 5 MRSSFAARVAG 15 (34)
T ss_dssp HHHHHHHHT-T
T ss_pred HHHHHHHHHcc
Confidence 58999999865
Done!