Query 040848
Match_columns 641
No_of_seqs 140 out of 651
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:25:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 1E-206 2E-211 1633.4 55.5 616 12-641 11-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 3E-165 6E-170 1284.1 42.7 554 33-641 29-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 6E-154 1E-158 1290.6 40.8 515 58-599 1-521 (521)
4 PF12670 DUF3792: Protein of u 87.3 2.8 6.2E-05 38.1 7.9 75 344-422 6-80 (116)
5 PF11368 DUF3169: Protein of u 81.5 22 0.00048 36.6 12.4 39 414-459 199-237 (248)
6 PRK11339 abgT putative aminobe 61.4 27 0.00059 39.9 7.9 85 349-436 265-360 (508)
7 KOG2568 Predicted membrane pro 61.3 3.1 6.8E-05 47.1 0.5 146 336-528 265-418 (518)
8 PF02990 EMP70: Endomembrane p 60.3 1.3E+02 0.0029 34.5 13.5 122 502-631 334-481 (521)
9 PF06570 DUF1129: Protein of u 59.3 69 0.0015 32.0 9.7 46 356-404 90-135 (206)
10 PF07331 TctB: Tripartite tric 58.0 40 0.00087 31.0 7.4 24 403-427 109-132 (141)
11 PF06609 TRI12: Fungal trichot 57.4 1.3E+02 0.0029 35.2 12.9 63 347-418 143-205 (599)
12 PF05297 Herpes_LMP1: Herpesvi 56.2 3.7 8.1E-05 42.8 0.0 33 397-429 126-158 (381)
13 COG5393 Predicted membrane pro 55.9 14 0.0003 33.7 3.5 50 351-403 48-108 (131)
14 PF09605 Trep_Strep: Hypotheti 53.4 52 0.0011 32.5 7.6 25 452-476 158-184 (186)
15 PF13347 MFS_2: MFS/sugar tran 51.3 86 0.0019 34.4 9.8 81 321-407 209-291 (428)
16 PF03806 ABG_transport: AbgT p 50.0 1.6E+02 0.0035 33.7 11.5 66 375-440 293-359 (502)
17 TIGR02973 nitrate_rd_NapE peri 44.4 26 0.00057 26.2 2.9 35 405-439 2-36 (42)
18 PF08055 Trp_leader1: Tryptoph 43.8 9.3 0.0002 22.7 0.3 8 563-570 6-13 (18)
19 COG2814 AraJ Arabinose efflux 42.3 2.1E+02 0.0045 31.9 10.8 67 332-402 206-273 (394)
20 KOG1278 Endosomal membrane pro 40.3 3.5E+02 0.0075 31.5 12.1 113 511-629 408-544 (628)
21 PF06570 DUF1129: Protein of u 37.5 48 0.001 33.1 4.6 60 561-633 140-200 (206)
22 TIGR00881 2A0104 phosphoglycer 37.4 1.1E+02 0.0023 31.9 7.5 22 382-403 258-279 (379)
23 PF06796 NapE: Periplasmic nit 36.8 32 0.0007 27.4 2.5 36 404-439 14-49 (56)
24 TIGR02972 TMAO_torE trimethyla 36.8 32 0.0007 26.3 2.4 35 405-439 7-41 (47)
25 KOG1289 Amino acid transporter 35.9 1.4E+02 0.0031 34.4 8.3 128 276-403 195-369 (550)
26 PF12271 Chs3p: Chitin synthas 35.4 5.8E+02 0.013 27.2 15.1 121 349-470 118-246 (293)
27 MTH00033 CYTB cytochrome b; Pr 34.5 68 0.0015 35.5 5.5 101 529-629 26-142 (383)
28 MTH00119 CYTB cytochrome b; Pr 33.4 97 0.0021 34.2 6.5 101 529-629 30-146 (380)
29 TIGR00901 2A0125 AmpG-related 33.3 2.6E+02 0.0056 29.3 9.7 21 388-408 257-277 (356)
30 MTH00053 CYTB cytochrome b; Pr 32.8 87 0.0019 34.6 6.0 100 529-628 30-145 (381)
31 TIGR00895 2A0115 benzoate tran 32.4 58 0.0013 34.3 4.5 26 380-405 289-314 (398)
32 TIGR00893 2A0114 d-galactonate 31.6 1.4E+02 0.003 31.1 7.2 24 384-407 259-282 (399)
33 TIGR00819 ydaH p-Aminobenzoyl- 29.2 2.5E+02 0.0054 32.4 9.0 50 349-399 267-328 (513)
34 KOG0569 Permease of the major 28.3 1E+02 0.0023 35.2 5.8 73 332-410 260-338 (485)
35 PLN00028 nitrate transmembrane 28.1 78 0.0017 35.5 4.9 33 372-404 288-320 (476)
36 COG1575 MenA 1,4-dihydroxy-2-n 27.1 3E+02 0.0064 29.5 8.5 120 287-409 45-177 (303)
37 TIGR00894 2A0114euk Na(+)-depe 25.8 1.7E+02 0.0036 32.4 6.9 26 375-400 300-325 (465)
38 PRK12307 putative sialic acid 25.6 2.2E+02 0.0048 30.7 7.7 24 381-404 271-294 (426)
39 TIGR02185 Trep_Strep conserved 25.0 3.2E+02 0.0069 27.0 7.9 20 453-472 162-181 (189)
40 MTH00086 CYTB cytochrome b; Pr 24.7 1.6E+02 0.0036 32.2 6.3 101 529-629 18-134 (355)
41 KOG4770 NADH dehydrogenase sub 24.7 3.5E+02 0.0075 28.5 8.1 150 324-482 54-207 (315)
42 PRK11273 glpT sn-glycerol-3-ph 24.2 1E+02 0.0022 34.1 4.8 21 383-403 296-316 (452)
43 KOG4812 Golgi-associated prote 24.1 2E+02 0.0044 29.7 6.3 39 347-398 157-195 (262)
44 COG2271 UhpC Sugar phosphate p 24.1 2.5E+02 0.0055 31.6 7.6 67 388-469 304-371 (448)
45 PRK03735 cytochrome b6; Provis 23.7 1.2E+02 0.0026 31.0 4.7 99 529-627 40-156 (223)
46 COG2322 Predicted membrane pro 23.6 7.1E+02 0.015 24.4 10.6 95 376-474 46-144 (177)
47 PF10852 DUF2651: Protein of u 23.4 3.5E+02 0.0075 23.3 6.6 65 380-470 6-70 (82)
48 COG4956 Integral membrane prot 23.4 3.1E+02 0.0067 29.5 7.7 90 378-474 45-134 (356)
49 KOG0253 Synaptic vesicle trans 23.3 3E+02 0.0066 30.8 7.8 110 341-469 134-247 (528)
50 MTH00034 CYTB cytochrome b; Va 22.4 1.5E+02 0.0032 32.8 5.5 98 529-629 29-145 (379)
51 MTH00145 CYTB cytochrome b; Pr 22.1 1.3E+02 0.0029 33.1 5.1 101 529-629 30-146 (379)
52 MTH00016 CYTB cytochrome b; Va 21.4 1.7E+02 0.0036 32.4 5.6 100 529-628 30-145 (378)
53 COG3371 Predicted membrane pro 21.1 6.7E+02 0.015 24.8 9.0 91 356-458 82-172 (181)
54 smart00767 DCD DCD is a plant 21.1 48 0.001 31.0 1.2 71 47-130 33-110 (132)
55 PF12822 DUF3816: Protein of u 21.0 3E+02 0.0065 26.0 6.8 28 383-410 74-101 (172)
56 PF09685 Tic20: Tic20-like pro 20.5 5.6E+02 0.012 22.1 9.1 25 457-481 81-105 (109)
57 cd00284 Cytochrome_b_N Cytochr 20.1 2E+02 0.0043 28.8 5.4 101 529-629 21-139 (200)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-206 Score=1633.41 Aligned_cols=616 Identities=67% Similarity=1.201 Sum_probs=586.1
Q ss_pred hhHHHHHHHHhcccceeecCCCCCCCCCCCCceEEEEeccccCCCCccccccccCCcCCCcccCCCCCccceecCCceee
Q 040848 12 MKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIEN 91 (641)
Q Consensus 12 m~~~~~~~~~~~~~~af~~pg~~p~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~slGeiL~Gdr~~~ 91 (641)
...++++.+++..+.|||+||++|..|++||+++++|||++|.++|.||+||++|||+|+++++++|||||+|+|||++|
T Consensus 11 ~~~~ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnLGeVl~GDRi~n 90 (628)
T KOG1278|consen 11 LLALLLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENLGEVLRGDRIEN 90 (628)
T ss_pred HHHHHHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccchhceeccCcccC
Confidence 33444444455679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccccccccceeeecCHHHHHHHHHHHhhcceEEEEEeceeEEEEeccccCCCcceeccCceeeeecccCCCCC
Q 040848 92 SVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKE 171 (641)
Q Consensus 92 S~y~i~f~~~~~c~~lC~~~~~~~~~~~~~~~I~~~Y~~~~~iD~LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~ 171 (641)
|||+++|++|++|+.+|++++++++++.++|+|+++|++||++||||++.+....+ +++.+|.+|||+|+.+. .+.
T Consensus 91 SPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~-~~~~~y~~GfplG~~~~---~~~ 166 (628)
T KOG1278|consen 91 SPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSD-DGKVYYGTGFPLGFKGP---KDE 166 (628)
T ss_pred CCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecC-CCceEeccCccceeccC---CCc
Confidence 99999999999999999999999999999999999999999999999988665443 47788999999999842 256
Q ss_pred CcEEEeeeEEEEEEEecCCCCCCcEEEEEEEEeccccccccccccCCCCcccCCCCCcccccCCCCCcccCC--CceEEE
Q 040848 172 EKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVDK--DKEIVF 249 (641)
Q Consensus 172 ~~~yL~NH~~f~I~Yn~~~~~~~~~IVgf~V~p~Si~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~i~f 249 (641)
+++|++||++|+|+||+.++ ++||||||||+|+|++|+.++.+++. ..++|+.+.+ ++++++ ++++.|
T Consensus 167 ~~~y~~NHl~~~i~yH~~~~-~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~--------~~~~~e~~~~~i~f 236 (628)
T KOG1278|consen 167 DKYYLHNHLDFVIRYHRDDN-DKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEK--------PLELDEGEETEIVF 236 (628)
T ss_pred cceeEeeeEEEEEEEEecCC-CceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCC--------ccccCCCCceEEEE
Confidence 78999999999999998876 67999999999999999876655555 5677887643 334444 456999
Q ss_pred EEEEEEeecCCCccchhhccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhhcCccEE
Q 040848 250 TYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLV 329 (641)
Q Consensus 250 TYSV~w~~s~~~w~~Rwd~Yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~l~~Di~~Yn~~~~~~~~~ee~GWKlv 329 (641)
||||+|+|||++|++|||.|+++++.|||||||+||++||+||+++|++|++||||||++|||++|.|||+|||+|||+|
T Consensus 237 TYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLV 316 (628)
T KOG1278|consen 237 TYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLV 316 (628)
T ss_pred EEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCCCCCccceeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchh
Q 040848 330 HGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWK 409 (641)
Q Consensus 330 hgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk 409 (641)
||||||||+++|+||++||+|+|+++|++++++||++|++||++||+++|+++++|+++|++|||+|+|+||+++|+.||
T Consensus 317 hGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk 396 (628)
T KOG1278|consen 317 HGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWK 396 (628)
T ss_pred ecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCcccCCCCCCC
Q 040848 410 RNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQI 489 (641)
Q Consensus 410 ~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~I 489 (641)
+++++|++++||+++++++++|+++|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+|||||||||
T Consensus 397 ~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqI 476 (628)
T KOG1278|consen 397 RNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQI 476 (628)
T ss_pred hhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccceeeeeccccceeeehhhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCceeeh
Q 040848 490 PEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWR 569 (641)
Q Consensus 490 P~~~~y~~~~~~~l~~GilPF~~i~iEl~~i~~slW~~~~yy~fgfL~~~~~ilii~~a~vsI~~tY~~L~~Edy~WwWr 569 (641)
|.||||+++++.+++||++|||+|||||+||++|+|.||+||+||||+++++||+++|||+||++||+|||+||||||||
T Consensus 477 P~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWR 556 (628)
T KOG1278|consen 477 PEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWR 556 (628)
T ss_pred CCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccchhHHHHHHHHhhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccCC
Q 040848 570 SYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 641 (641)
Q Consensus 570 SF~~~gs~~~y~flYsi~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~Fv~~IY~~iK~D 641 (641)
||++||++|+|+|+||++|+++|++++|++++++|||||++++++++|+||||||+||+|||||||+++|+|
T Consensus 557 sF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 557 SFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred eeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-165 Score=1284.12 Aligned_cols=554 Identities=40% Similarity=0.808 Sum_probs=527.3
Q ss_pred CCCCCCCCCCceEEEEeccccC-CCCccccccccCCcCC--CcccCCCCCccceecCCceeeCceEEEecccccccccee
Q 040848 33 VAPRDFQRHDPLNVKVNKLSST-KTQLPYDYYFLKYCKP--AKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACR 109 (641)
Q Consensus 33 ~~p~~Y~~Gd~V~l~vNkl~s~-~~~~~Y~Yy~lpfC~p--~~~~~~~~slGeiL~Gdr~~~S~y~i~f~~~~~c~~lC~ 109 (641)
.+.|.|++||+|++|+||++|+ |+||+|.||+||||++ +++++++|+|||+|.|||+..|+|+++|++|++.+++|+
T Consensus 29 e~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~ 108 (593)
T KOG1277|consen 29 ESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCE 108 (593)
T ss_pred ccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhhCCceeeecceeeeecccCCceeeeh
Confidence 4679999999999999999999 9999999999999995 467889999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHhhcceEEEEEeceeEEEEeccccCCCcceeccCceeeeecccCCCCCCcEEEeeeEEEEEEEecC
Q 040848 110 VKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKD 189 (641)
Q Consensus 110 ~~~~~~~~~~~~~~I~~~Y~~~~~iD~LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~yL~NH~~f~I~Yn~~ 189 (641)
+++++++++.++++|+|+|++||++||||+|..+|+.|++ + .+++.++||+||.+|.|.||++
T Consensus 109 ~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~-k----------------~~~~~ky~L~thk~f~i~yn~d 171 (593)
T KOG1277|consen 109 KKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDED-K----------------LDNEGKYYLYTHKKFEIGYNGD 171 (593)
T ss_pred hhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccc-c----------------CCCCCceEEEEeeeEEEeecCc
Confidence 9999999999999999999999999999999998876543 1 1256789999999999999987
Q ss_pred CCCCCcEEEEEEEEeccccccccccccCCCCcccCCCCCcccccCCCCCcccCCCceEEEEEEEEEeecCCCccchhhcc
Q 040848 190 RETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVDKDKEIVFTYDVTFKESDIKWASRWDTY 269 (641)
Q Consensus 190 ~~~~~~~IVgf~V~p~Si~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~Y 269 (641)
|||.++++.. ...++.++..++|||||+|+|+++++++|.|+|
T Consensus 172 ------rii~vnlt~~-------------------------------~~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdky 214 (593)
T KOG1277|consen 172 ------RIIDVNLTTH-------------------------------GLVDLRPDKKLTFTYSVKWKETEVEFEKRFDKY 214 (593)
T ss_pred ------eEEEEEeeec-------------------------------ccccCCCCCCCceEEEEEeeeccCcHHHHhHhh
Confidence 9999988751 223445566899999999999999999999999
Q ss_pred ccCC--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchh-----hhhhhhhcCccEEeccccCCCCCccc
Q 040848 270 LLMN--DDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLET-----QEEAQEETGWKLVHGDVFRAPTNAGL 342 (641)
Q Consensus 270 l~~~--~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~l~~Di~~Yn~~~~-----~~~~~ee~GWKlvhgDVFR~P~~~~l 342 (641)
++.. +++||||||+||++.|+||+|+|++||+|+||||.+||+++|+ |.|+|||.|||+|||||||||+|+.|
T Consensus 215 ld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~L 294 (593)
T KOG1277|consen 215 LDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLL 294 (593)
T ss_pred cccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHH
Confidence 9743 7789999999999999999999999999999999999998875 34668999999999999999999999
Q ss_pred eeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHH
Q 040848 343 LCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGI 422 (641)
Q Consensus 343 ls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~ 422 (641)
||+++|+|+|++..+++++++|++|.+.+. ||++++++|++|+++|.++||+||.+|.+.||++|.|++++|+.++|++
T Consensus 295 fsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~ 373 (593)
T KOG1277|consen 295 FSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVP 373 (593)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHH
Confidence 999999999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhhhhhccCC-CCCCCCcccCCCCCCCCCCCccccccee
Q 040848 423 LFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKK-PAIEDPVKTNKIPRQIPEQAWYMTPVFS 501 (641)
Q Consensus 423 ~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g~k~-~~~~~P~~~n~ipR~IP~~~~y~~~~~~ 501 (641)
++++++++|++++++++++|+||+|++.++++|++|..||+++|++.|.++ .++++|||++++||+||++|||++|.+.
T Consensus 374 ~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~ 453 (593)
T KOG1277|consen 374 VFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVI 453 (593)
T ss_pred HHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHH
Confidence 999999999999999999999999999999999999999999999999874 4578999999999999999999999999
Q ss_pred eeeccccceeeehhhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCceeeheecccchhHHHH
Q 040848 502 ILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYL 581 (641)
Q Consensus 502 ~l~~GilPF~~i~iEl~~i~~slW~~~~yy~fgfL~~~~~ilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~ 581 (641)
+++||+|||++||||+||||+|+|.+++||+|||++++++||+++++||||++|||||++||||||||||+++||+|+|+
T Consensus 454 ~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yv 533 (593)
T KOG1277|consen 454 MLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYV 533 (593)
T ss_pred HHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccCC
Q 040848 582 FLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 641 (641)
Q Consensus 582 flYsi~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~Fv~~IY~~iK~D 641 (641)
++||+|||++|++|+|++|+.+|||||+++|.++|+|||+|||.++..||||||.++|+|
T Consensus 534 y~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 534 YLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred hhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=6.2e-154 Score=1290.58 Aligned_cols=515 Identities=57% Similarity=1.129 Sum_probs=489.3
Q ss_pred ccccccccCCcCCCc-ccCCCCCccceecCCceeeCceEEEeccccccccceeeecCHHHHHHHHHHHhhcceEEEEEec
Q 040848 58 LPYDYYFLKYCKPAK-IVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDN 136 (641)
Q Consensus 58 ~~Y~Yy~lpfC~p~~-~~~~~~slGeiL~Gdr~~~S~y~i~f~~~~~c~~lC~~~~~~~~~~~~~~~I~~~Y~~~~~iD~ 136 (641)
+|||||+||||+|++ .++++|||||+|+|||+++|||+++|++|++|+.+|+++++++|+++++++|+|+|++||+|||
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~ 80 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDD 80 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecC
Confidence 589999999999996 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccccCCCcceeccCceeeeecccCCCCCCcEEEeeeEEEEEEEecCCCCCCcEEEEEEEEecccccccccccc
Q 040848 137 LPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSE 216 (641)
Q Consensus 137 LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~yL~NH~~f~I~Yn~~~~~~~~~IVgf~V~p~Si~~~~~~~~~ 216 (641)
||+++..++.++ ....|..|+|+|.. +++++|||||++|+|+||++++ +++|||||||+|+|++|.
T Consensus 81 LP~~~~~~~~~~-~~~~y~~G~~~g~~------~~~~~~l~NH~~f~I~Yn~~~~-~~~~IVgf~v~p~Si~~~------ 146 (521)
T PF02990_consen 81 LPIAGFIGSVDG-CDKGYPIGFPLGFK------DDNKYYLYNHLDFTIRYNQESN-GDYRIVGFEVTPRSIDHS------ 146 (521)
T ss_pred ceEEEEecccCC-cceecCCCcccCcc------cCCcceeEeEEEEEEEEECCCC-CceEEEEEEEEeccccCc------
Confidence 999998876543 34668889998876 6788999999999999998765 668999999999999874
Q ss_pred CCCCcccCCCCCcccccCCCCCcccCCCc---eEEEEEEEEEeecCCCccchhhcccc-CCCcchhhhHHHHHHHHHHHH
Q 040848 217 KNPQVTTCNKDTKNLVQGTAIPQEVDKDK---EIVFTYDVTFKESDIKWASRWDTYLL-MNDDQIHWFSIINSLMIVLFL 292 (641)
Q Consensus 217 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~---~i~fTYSV~w~~s~~~w~~Rwd~Yl~-~~~~~ihw~SIiNS~~ivl~L 292 (641)
+|+.+. ++++++++++ +|.|||||+|++++++|++|||+|++ ..++++||+||+||+++|+||
T Consensus 147 ------~C~~~~-------~~~~~l~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L 213 (521)
T PF02990_consen 147 ------TCPGNE-------SSPQELPEDKEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFL 213 (521)
T ss_pred ------cccccC-------CCCeeccCCCcccEEEEEEEEEEEecCCchhhccccccccccCCceEEEeHHHHHHHHHHH
Confidence 376541 2344444433 69999999999999999999999999 778999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccchhhhhhhhhcCccEEeccccCCCCCccceeeeeccchHHHHHHHHHHHHHHhhccCCC
Q 040848 293 SGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPS 372 (641)
Q Consensus 293 ~~~v~~Il~R~l~~Di~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~ 372 (641)
+++|++||+|+||||++|||++++++|++||+|||+|||||||||+|+++||+++|+|+|+++|+++++++|++|+++|+
T Consensus 214 ~~~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~ 293 (521)
T PF02990_consen 214 SGLVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPN 293 (521)
T ss_pred HHHHHHHHHHHhhcccccccccccccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHH
Q 040848 373 NRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALV 452 (641)
Q Consensus 373 ~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~ 452 (641)
+||+++++++++|+++|++|||+|||+||+|+|++||+++++|++++|++++++++++|+++|.++|++|+||+|++.++
T Consensus 294 ~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~ 373 (521)
T PF02990_consen 294 NRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLI 373 (521)
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhhccCCCCC-CCCcccCCCCCCCCCCCcccccceeeeeccccceeeehhhHHHHHHhhhcchhHH
Q 040848 453 FLWFGISVPLVFVGSYLGFKKPAI-EDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYY 531 (641)
Q Consensus 453 ~lw~~vs~PL~~iG~~~g~k~~~~-~~P~~~n~ipR~IP~~~~y~~~~~~~l~~GilPF~~i~iEl~~i~~slW~~~~yy 531 (641)
++|++|++||+++||++|+|+++. |+|||+|+||||||+||||+++++.++++|++||++|++||+||++|+|.+++||
T Consensus 374 ~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~ 453 (521)
T PF02990_consen 374 ALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYY 453 (521)
T ss_pred HHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceE
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCceeeheecccchhHHHHHHHHhhheeeeecccccc
Q 040848 532 IFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLV 599 (641)
Q Consensus 532 ~fgfL~~~~~ilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~g~~ 599 (641)
+||||+++++|++++|||+||++||+|||+||||||||||++|||+|+|+|+||+||+++|++|+|++
T Consensus 454 ~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 454 LFGFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
No 4
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=87.29 E-value=2.8 Score=38.14 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=54.6
Q ss_pred eeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHH
Q 040848 344 CVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGI 422 (641)
Q Consensus 344 s~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~ 422 (641)
+++-|.-.-+..+.+..+++|.+=...+-+.+.+--...+.++++.+++|++++|.- +.|.|.+= ..++.++=.+
T Consensus 6 ~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~---~~kG~l~G-~~~Gl~y~~i 80 (116)
T PF12670_consen 6 AVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRKA---GSKGWLHG-LLVGLLYFLI 80 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHH-HHHHHHHHHH
Confidence 344556666777777788888776666677788888889999999999999999874 56778753 3444443333
No 5
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=81.48 E-value=22 Score=36.63 Aligned_cols=39 Identities=15% Similarity=0.455 Sum_probs=21.3
Q ss_pred hhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhh
Q 040848 414 KTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGIS 459 (641)
Q Consensus 414 ~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs 459 (641)
++..++|+....+.++- . .++..+...++.+.++|+-+.
T Consensus 199 ln~~ll~~~~~~l~i~s----~---~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 199 LNQYLLPILYILLFIYS----L---LTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHHHH----H---HcCCccHHHHHHHHHHHHHHH
Confidence 34456677665544332 1 233455556667777777544
No 6
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=61.45 E-value=27 Score=39.90 Aligned_cols=85 Identities=13% Similarity=0.216 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHHH--hhccCCCCCc-----hHHH----HHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhc
Q 040848 349 TGVQIFGMTLVTMIFAL--LGFLSPSNRG-----GLMT----AMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAF 417 (641)
Q Consensus 349 ~G~Qll~~~~~~l~~a~--~g~lsp~~rg-----~l~t----~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~ 417 (641)
.|+-++..+.+.+++.+ -|.++..+.| -+++ ...++|.+.|++-|++++++.+ .++..+.+.-..-
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks---~~Dv~~~m~~g~~ 341 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRR---QADLPHLMIEPMK 341 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccC---HHHHHHHHHHHHH
Confidence 55655554444333321 4555432224 5677 5566667777777777765421 2333333332222
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 040848 418 MFPGILFAVFFVLNALIWG 436 (641)
Q Consensus 418 l~P~~~~~i~~~lN~i~~~ 436 (641)
-.-+.++.+++..+++.+.
T Consensus 342 ~m~~~ivl~F~~Aqfia~F 360 (508)
T PRK11339 342 EMAGFIVMVFPLAQFVAMF 360 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2223334444555555553
No 7
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=61.30 E-value=3.1 Score=47.06 Aligned_cols=146 Identities=15% Similarity=0.261 Sum_probs=91.0
Q ss_pred CCCCccceeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHH--HHHHHhhhhhHHHHHHHHhc--cCcchhhh
Q 040848 336 APTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVL--LWVFMGLFAGYASARLYKMF--KGTEWKRN 411 (641)
Q Consensus 336 ~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~--~y~~~~~isGy~S~~~yk~~--~g~~Wk~~ 411 (641)
.|.-.+.++..++++=+-+.-+++.++.--.|+.+|.-+|.++..+.+ +|.+.+.+.|-+. .+..- ....|+..
T Consensus 265 ~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~--~~g~~se~~~~~~lf 342 (518)
T KOG2568|consen 265 SPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLAR--VIGNISELSSLLILF 342 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHH--HhcCcccccchhhHH
Confidence 788889999999999998887777777778899999888777765543 3333444444322 22111 01122211
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCcccCCCCCCCCC
Q 040848 412 TLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPE 491 (641)
Q Consensus 412 ~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~ 491 (641)
. ++|+-.....+..|+++|++=|+ |.=++.|++-+
T Consensus 343 ~-----------------------------~ip~ai~d~~f~~wIF~SL~~Tl----------------k~Lr~rRn~vK 377 (518)
T KOG2568|consen 343 A-----------------------------ALPLAILDAAFIYWIFISLAKTL----------------KKLRLRRNIVK 377 (518)
T ss_pred H-----------------------------HHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH
Confidence 0 23334444567889999987443 33455677777
Q ss_pred CCcccccceeeeeccccceeeehhhHHHHH----Hhhhcch
Q 040848 492 QAWYMTPVFSILIGGILPFGAVFIELFFIL----TSIWLNQ 528 (641)
Q Consensus 492 ~~~y~~~~~~~l~~GilPF~~i~iEl~~i~----~slW~~~ 528 (641)
-.-|++..-.+.++=+.-|+-+.+|.++.- +..|...
T Consensus 378 l~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~ 418 (518)
T KOG2568|consen 378 LSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKER 418 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 677766554444555556667778887755 6677764
No 8
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=60.33 E-value=1.3e+02 Score=34.52 Aligned_cols=122 Identities=20% Similarity=0.412 Sum_probs=74.5
Q ss_pred eeeccccceeeehhhHHHHHHh-hhcch--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC---------------
Q 040848 502 ILIGGILPFGAVFIELFFILTS-IWLNQ--FYYIFGFLFIVFVILLITCAEITIVLCYFQLCSED--------------- 563 (641)
Q Consensus 502 ~l~~GilPF~~i~iEl~~i~~s-lW~~~--~yy~fgfL~~~~~ilii~~a~vsI~~tY~~L~~Ed--------------- 563 (641)
++-+.++|.... =.+++++. .|.++ --..|+-++.++++.+.++.-.+++..|+-...+.
T Consensus 334 ~lt~~~~P~~~~--~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~I 411 (521)
T PF02990_consen 334 ILTSLLFPGILF--SIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQI 411 (521)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcC
Confidence 344567776332 33344554 46543 23468888888888999999999999988753211
Q ss_pred --Cceeehee---cccc---hhHHHHHHHHhhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040848 564 --YHWWWRSY---LTAG---SSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFV 631 (641)
Q Consensus 564 --y~WwWrSF---~~~g---s~~~y~flYsi~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~Fv 631 (641)
-.|.=+.+ +.+| ..++|+.+|.++--+- .+ +....||+.++..+++.+.|+.|+.+.++.-.
T Consensus 412 P~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W---~~---~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 412 PPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLW---SN---KFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred CCCccccCCccceeecchHHHHHHHHHHHHHHHHhh---cC---cceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14543443 4455 3455777665442211 11 13344677777777888888888888777544
No 9
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=59.31 E-value=69 Score=32.03 Aligned_cols=46 Identities=17% Similarity=0.517 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhcc
Q 040848 356 MTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFK 404 (641)
Q Consensus 356 ~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~ 404 (641)
..+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+.
T Consensus 90 ~~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677778888877433222 333334456667776666666543
No 10
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=58.04 E-value=40 Score=31.05 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=15.6
Q ss_pred ccCcchhhhhhhhhchhhHHHHHHH
Q 040848 403 FKGTEWKRNTLKTAFMFPGILFAVF 427 (641)
Q Consensus 403 ~~g~~Wk~~~~~t~~l~P~~~~~i~ 427 (641)
+|.++|++.. ..+..+++.+..++
T Consensus 109 ~g~r~~~~~~-~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 109 LGERRWLRLL-LISVVFAAVIYFVF 132 (141)
T ss_pred hCCCcHHHHH-HHHHHHHHHHHHHH
Confidence 4478898754 55667677665554
No 11
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=57.40 E-value=1.3e+02 Score=35.23 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=36.9
Q ss_pred eccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhch
Q 040848 347 VGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFM 418 (641)
Q Consensus 347 vG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l 418 (641)
+|.|.|.+.... .--..+.+.|+--....-+.++....++|.++.++.. ..+||++..+...+
T Consensus 143 vgaG~~~~~~~~------isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 143 VGAGVQELAALA------ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIW 205 (599)
T ss_pred HhhHHHHHHHHH------HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHH
Confidence 367777654221 1223344566655544555566667778888777643 46899876665443
No 12
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=56.16 E-value=3.7 Score=42.80 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHhccCcchhhhhhhhhchhhHHHHHHHHH
Q 040848 397 ARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFV 429 (641)
Q Consensus 397 ~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~ 429 (641)
..+.+.++.+-|...+++-+.++-.+++++...
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~ 158 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVL 158 (381)
T ss_dssp ---------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667888888876666565544444444333
No 13
>COG5393 Predicted membrane protein [Function unknown]
Probab=55.90 E-value=14 Score=33.69 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHhhccC----------CCCCc-hHHHHHHHHHHHHhhhhhHHHHHHHHhc
Q 040848 351 VQIFGMTLVTMIFALLGFLS----------PSNRG-GLMTAMVLLWVFMGLFAGYASARLYKMF 403 (641)
Q Consensus 351 ~Qll~~~~~~l~~a~~g~ls----------p~~rg-~l~t~~i~~y~~~~~isGy~S~~~yk~~ 403 (641)
.|+++|..+++.|+.+|..+ |.+|= +......++|+++.+.+++ +++|..
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW---~lrks~ 108 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW---TLRKSR 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 57888888888888777654 67775 7777778888888887776 455443
No 14
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=53.38 E-value=52 Score=32.51 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhhhhhhhhccC--CCCC
Q 040848 452 VFLWFGISVPLVFVGSYLGFK--KPAI 476 (641)
Q Consensus 452 ~~lw~~vs~PL~~iG~~~g~k--~~~~ 476 (641)
+.+...+.+-..++|+++|.| ++++
T Consensus 158 ~~~~~~~~~v~a~lG~~lG~kllkKHF 184 (186)
T PF09605_consen 158 LIIIIIITFVGALLGALLGKKLLKKHF 184 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455777788999999987 4444
No 15
>PF13347 MFS_2: MFS/sugar transport protein
Probab=51.31 E-value=86 Score=34.35 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=45.1
Q ss_pred hhhcCccEEeccccCCCCCccceeeee--ccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHH
Q 040848 321 QEETGWKLVHGDVFRAPTNAGLLCVYV--GTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASAR 398 (641)
Q Consensus 321 ~ee~GWKlvhgDVFR~P~~~~lls~lv--G~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~ 398 (641)
++..++|..-..+||-|+...++.+.. ..|..+...... +.+-..+ ..+...+.....+.+.++++....++
T Consensus 209 ~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~---y~~~~vl---~~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (428)
T PF13347_consen 209 EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLP---YYFTYVL---GNEGLISIFMLIFFVASIVGSPLWGR 282 (428)
T ss_pred ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHh---cCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677888877665533322 222222222111 1111122 12245555566777888888888899
Q ss_pred HHHhccCcc
Q 040848 399 LYKMFKGTE 407 (641)
Q Consensus 399 ~yk~~~g~~ 407 (641)
+-|.+|.++
T Consensus 283 l~~r~gk~~ 291 (428)
T PF13347_consen 283 LSKRFGKKK 291 (428)
T ss_pred HHHHcccee
Confidence 998886554
No 16
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=49.95 E-value=1.6e+02 Score=33.75 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHhccC-cchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcCC
Q 040848 375 GGLMTAMVLLWVFMGLFAGYASARLYKMFKG-TEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSS 440 (641)
Q Consensus 375 g~l~t~~i~~y~~~~~isGy~S~~~yk~~~g-~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss 440 (641)
+.+++..+.+-.+.-.+.|.+=|+.-+++++ ++..+.+--..--....+...++..+++++.+.|.
T Consensus 293 SPf~~gIIpiI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Sn 359 (502)
T PF03806_consen 293 SPFMKGIIPIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSN 359 (502)
T ss_pred ChHHHhHHHHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 3455554444444444444443433333332 33333333222333444555666666666665553
No 17
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=44.44 E-value=26 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=30.4
Q ss_pred CcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcC
Q 040848 405 GTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQS 439 (641)
Q Consensus 405 g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~S 439 (641)
.++||...+++..++|.+..+....--++.|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999998888888888653
No 18
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=43.81 E-value=9.3 Score=22.73 Aligned_cols=8 Identities=38% Similarity=1.631 Sum_probs=5.9
Q ss_pred CCceeehe
Q 040848 563 DYHWWWRS 570 (641)
Q Consensus 563 dy~WwWrS 570 (641)
--||||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 35799975
No 19
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=42.34 E-value=2.1e+02 Score=31.85 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=46.5
Q ss_pred cccCCCCC-ccceeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 040848 332 DVFRAPTN-AGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKM 402 (641)
Q Consensus 332 DVFR~P~~-~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~ 402 (641)
+++|.|+- ..++..+++.|-|+..-+-+.=++.-.. .-+.+.++..+..|=+.++++....||+.+.
T Consensus 206 ~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 206 RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 56888874 4456677777777765443333333211 1256788999999999999999999999754
No 20
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.27 E-value=3.5e+02 Score=31.45 Aligned_cols=113 Identities=19% Similarity=0.381 Sum_probs=73.9
Q ss_pred eeehhhHHHHHHhhhcch--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCC----------------Cceee---h
Q 040848 511 GAVFIELFFILTSIWLNQ--FYYIFGFLFIVFVILLITCAEITIVLCYFQLCSED----------------YHWWW---R 569 (641)
Q Consensus 511 ~~i~iEl~~i~~slW~~~--~yy~fgfL~~~~~ilii~~a~vsI~~tY~~L~~Ed----------------y~WwW---r 569 (641)
|+++.-.+....=+|.++ -=--|+-++...++...+|.-.|-+.-|+--+... .+|+= .
T Consensus 408 Givf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~ 487 (628)
T KOG1278|consen 408 GIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIP 487 (628)
T ss_pred hHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhh
Confidence 555555555555579764 22457777777777888888888888887664322 37764 4
Q ss_pred eecccch---hHHHHHHHHhhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 570 SYLTAGS---SALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 570 SF~~~gs---~~~y~flYsi~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
+-+.+|. -++|+.++.|+ ..+=++ |.-+.||+.++.-+++-+.|.-|+.+.++.
T Consensus 488 ~ili~GilPFg~ifIELfFI~---~SiW~~---qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 488 SILIAGILPFGAIFIELFFIL---SSIWLN---QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred HHHhhcccchHHHHHHHHHHH---HHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455654 34566665443 222223 567779999988888888998888888765
No 21
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.49 E-value=48 Score=33.13 Aligned_cols=60 Identities=18% Similarity=0.456 Sum_probs=30.9
Q ss_pred cCCCceeeheeccc-chhHHHHHHHHhhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040848 561 SEDYHWWWRSYLTA-GSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRK 633 (641)
Q Consensus 561 ~Edy~WwWrSF~~~-gs~~~y~flYsi~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~Fv~~ 633 (641)
.+..++||+.+..+ ++..+++.++.+..++. ..++- . ++-...+..|.+.+.+.+++-||
T Consensus 140 ~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp-~~inp---~---------l~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 140 KKKRPSWWKYILISVLAMVLWIVIFVLTSFLP-PVINP---V---------LPPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHcc-ccCCc---C---------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899998644 44455556655444321 11211 1 22234445566666666554443
No 22
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=37.35 E-value=1.1e+02 Score=31.93 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHhc
Q 040848 382 VLLWVFMGLFAGYASARLYKMF 403 (641)
Q Consensus 382 i~~y~~~~~isGy~S~~~yk~~ 403 (641)
...+.+.+.++..+++++-+..
T Consensus 258 ~~~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 258 FTLYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHHHcchhHHHHHHHHHHH
Confidence 3445566677777777766543
No 23
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=36.85 E-value=32 Score=27.37 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=30.7
Q ss_pred cCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcC
Q 040848 404 KGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQS 439 (641)
Q Consensus 404 ~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~S 439 (641)
+++.||...+++..++|.+..+++..--++.|..+-
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999888888887653
No 24
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=36.81 E-value=32 Score=26.35 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=30.2
Q ss_pred CcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcC
Q 040848 405 GTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQS 439 (641)
Q Consensus 405 g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~S 439 (641)
.++||...+++..++|.+..+....--++.|..+-
T Consensus 7 ~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 7 SNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999988888888887653
No 25
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=35.88 E-value=1.4e+02 Score=34.43 Aligned_cols=128 Identities=21% Similarity=0.215 Sum_probs=61.4
Q ss_pred chhhhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhccchh-hhhhhhhcCccE----------------Eecc-----
Q 040848 276 QIHWFSIINSLMIVL-FLSGMVAMIMMRTLYRDIANYNQLET-QEEAQEETGWKL----------------VHGD----- 332 (641)
Q Consensus 276 ~ihw~SIiNS~~ivl-~L~~~v~~Il~R~l~~Di~~Yn~~~~-~~~~~ee~GWKl----------------vhgD----- 332 (641)
..+|++.+|++-+.+ +|..++.+|.+-.-+++-...|+.+. -.+.+.++|||. .--|
T Consensus 195 p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~ 274 (550)
T KOG1289|consen 195 PTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHM 274 (550)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHH
Confidence 447888888875554 34444555655444443111232211 123345677771 1001
Q ss_pred -------ccCCCC---CccceeeeeccchHHHHHHHHH-HHHHHhhcc--C---------CCCCchHHH--HHHHHHHHH
Q 040848 333 -------VFRAPT---NAGLLCVYVGTGVQIFGMTLVT-MIFALLGFL--S---------PSNRGGLMT--AMVLLWVFM 388 (641)
Q Consensus 333 -------VFR~P~---~~~lls~lvG~G~Qll~~~~~~-l~~a~~g~l--s---------p~~rg~l~t--~~i~~y~~~ 388 (641)
=.+.|+ .....+.++|-++++.++..+. -+=++++-- . --+||++.- ..++.=.++
T Consensus 275 aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~ 354 (550)
T KOG1289|consen 275 AEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFM 354 (550)
T ss_pred HHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHh
Confidence 123443 2334555666666666554444 222222211 1 134554332 223333457
Q ss_pred hhhhhHHHHHHHHhc
Q 040848 389 GLFAGYASARLYKMF 403 (641)
Q Consensus 389 ~~isGy~S~~~yk~~ 403 (641)
|..+.-.++|+--.|
T Consensus 355 gi~s~~a~SR~v~af 369 (550)
T KOG1289|consen 355 GISSLTASSRLVYAF 369 (550)
T ss_pred hHHHHHHHHHHHhhh
Confidence 777778888885444
No 26
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=35.41 E-value=5.8e+02 Score=27.24 Aligned_cols=121 Identities=18% Similarity=0.259 Sum_probs=72.4
Q ss_pred cchHHHHHH---HHHHHHHHhhccCCCCCchHHHHHHHHH--HHHhhhhhHHHHHHHHhccC---cchhhhhhhhhchhh
Q 040848 349 TGVQIFGMT---LVTMIFALLGFLSPSNRGGLMTAMVLLW--VFMGLFAGYASARLYKMFKG---TEWKRNTLKTAFMFP 420 (641)
Q Consensus 349 ~G~Qll~~~---~~~l~~a~~g~lsp~~rg~l~t~~i~~y--~~~~~isGy~S~~~yk~~~g---~~Wk~~~~~t~~l~P 420 (641)
+++|+.... .+.++-+..|+.- ...|+..+..+.-- ++..+++||+|--..|.+.| ++-.-..+....++|
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQl-~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p 196 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQL-WEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLP 196 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeee-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Confidence 556766533 3444445666653 45676665544322 23445667777767776655 222223445567899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhhhhhc
Q 040848 421 GILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLG 470 (641)
Q Consensus 421 ~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g 470 (641)
++.+.+++++..++-..-=-.--|.+.++.-.+++..-++-.-.++-.+.
T Consensus 197 ~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC 246 (293)
T PF12271_consen 197 AIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHIC 246 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 99999999988887665555566777777666665555555444444444
No 27
>MTH00033 CYTB cytochrome b; Provisional
Probab=34.49 E-value=68 Score=35.45 Aligned_cols=101 Identities=19% Similarity=0.385 Sum_probs=62.4
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHhhh----------hhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFIV-FVILLITCAEITIVLC----------YFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~~-~~ilii~~a~vsI~~t----------Y~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..+-+|.++.. +++.++|....+.--+ ....+.-+++|..|+.-.-|++.+++.+| .+||-..+
T Consensus 26 ~~w~~Gsll~~~~~~qiiTGi~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~gsY~ 105 (383)
T MTH00033 26 YWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYS 105 (383)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 34668887644 4444555533221111 11223567899999999999998888776 45554445
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 ~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.+....+..++++.-++..=...-|-.|-.||.++-.
T Consensus 106 r~~~W~~Gv~ll~l~m~~aF~GYvLpw~qms~w~~~V 142 (383)
T MTH00033 106 RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATV 142 (383)
T ss_pred ChHHHHHhHHHHHHHHHHHHhhhcccccchhhHHHHH
Confidence 5556666667776666666555666666666666544
No 28
>MTH00119 CYTB cytochrome b; Provisional
Probab=33.36 E-value=97 Score=34.24 Aligned_cols=101 Identities=17% Similarity=0.277 Sum_probs=63.1
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHh----------hhhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFI-VFVILLITCAEITIV----------LCYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~-~~~ilii~~a~vsI~----------~tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..|.+|.++. ++++.++|....+.- .+....+.-+++|.-|+.-.-|++..++.+| .++|-..|
T Consensus 30 ~~~~~G~ll~~~~~~qiitG~~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~ 109 (380)
T MTH00119 30 AWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYL 109 (380)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhceec
Confidence 4578898764 444455555433211 1122234567899999999988888887766 34555556
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 ~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.+..-.+..++++.-+...=....|-.|-.||.|+-.
T Consensus 110 ~~~~W~~Gv~l~~l~~~~~f~Gy~Lpw~q~s~wa~~v 146 (380)
T MTH00119 110 YKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATV 146 (380)
T ss_pred ccchhhhhhHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 5666666677777666665555556666666665543
No 29
>TIGR00901 2A0125 AmpG-related permease.
Probab=33.32 E-value=2.6e+02 Score=29.33 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=11.4
Q ss_pred HhhhhhHHHHHHHHhccCcch
Q 040848 388 MGLFAGYASARLYKMFKGTEW 408 (641)
Q Consensus 388 ~~~isGy~S~~~yk~~~g~~W 408 (641)
.+++++..++++.+.++.+++
T Consensus 257 ~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 257 GAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 444555666666665544443
No 30
>MTH00053 CYTB cytochrome b; Provisional
Probab=32.80 E-value=87 Score=34.63 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=61.5
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHH----------HhhhhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFI-VFVILLITCAEIT----------IVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~-~~~ilii~~a~vs----------I~~tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..+-||.++. ++++.++|....+ --.+....+.-|++|.-|+.-.-|++.+++.+| .+||-..|
T Consensus 30 ~~w~~Gsll~~~~~~qiiTGi~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~ 109 (381)
T MTH00053 30 YLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYT 109 (381)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHheccCChHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4467887764 4444455543322 111222234567999999999999999988877 45665555
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 040848 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACF 628 (641)
Q Consensus 593 ~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~ 628 (641)
.+....+..++++.-++..=...-|-.|=.||.++-
T Consensus 110 ~~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~t 145 (381)
T MTH00053 110 KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAAT 145 (381)
T ss_pred CchHHHhhHHHHHHHHHHHHHHhccchhhhhhHHHH
Confidence 555566666666666655555555555666665544
No 31
>TIGR00895 2A0115 benzoate transport.
Probab=32.35 E-value=58 Score=34.26 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhccC
Q 040848 380 AMVLLWVFMGLFAGYASARLYKMFKG 405 (641)
Q Consensus 380 ~~i~~y~~~~~isGy~S~~~yk~~~g 405 (641)
.....+.+++.+++.+++++-+.++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLGP 314 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 33445556667777777777666653
No 32
>TIGR00893 2A0114 d-galactonate transporter.
Probab=31.60 E-value=1.4e+02 Score=31.07 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=13.4
Q ss_pred HHHHHhhhhhHHHHHHHHhccCcc
Q 040848 384 LWVFMGLFAGYASARLYKMFKGTE 407 (641)
Q Consensus 384 ~y~~~~~isGy~S~~~yk~~~g~~ 407 (641)
...+.+.++....+++.+.++.++
T Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 259 LPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455566666666666555544
No 33
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=29.24 E-value=2.5e+02 Score=32.38 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHHHHHHh---hccCCCC--C-------chHHHHHHHHHHHHhhhhhHHHHHH
Q 040848 349 TGVQIFGMTLVTMIFALL---GFLSPSN--R-------GGLMTAMVLLWVFMGLFAGYASARL 399 (641)
Q Consensus 349 ~G~Qll~~~~~~l~~a~~---g~lsp~~--r-------g~l~t~~i~~y~~~~~isGy~S~~~ 399 (641)
.|+-++..+.+.+ +.++ |.++... . +++......+|.+.|++.|.+++++
T Consensus 267 Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~i 328 (513)
T TIGR00819 267 AGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRSI 328 (513)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 5666665444433 4455 6665321 1 4566777778888888888887753
No 34
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.26 E-value=1e+02 Score=35.16 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=34.9
Q ss_pred cccCCCCCc--cceeeeeccchHHHH----HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccC
Q 040848 332 DVFRAPTNA--GLLCVYVGTGVQIFG----MTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKG 405 (641)
Q Consensus 332 DVFR~P~~~--~lls~lvG~G~Qll~----~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g 405 (641)
|++|-|+++ ++....+..+-|+.. ..-.+-++--.|+- +..--..-.+.-++..+++++|.+.-=|. |
T Consensus 260 ~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~-~~~a~~an~~~g~v~~~~t~~~~~lid~~-----g 333 (485)
T KOG0569|consen 260 QLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFT-PEEAQYANLGIGIVNLLSTLVSPFLIDRL-----G 333 (485)
T ss_pred HHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C
Confidence 788888653 444544555555432 12223344445533 22212222233344555666666555544 5
Q ss_pred cchhh
Q 040848 406 TEWKR 410 (641)
Q Consensus 406 ~~Wk~ 410 (641)
+|+..
T Consensus 334 RRpLl 338 (485)
T KOG0569|consen 334 RRPLL 338 (485)
T ss_pred CcHHH
Confidence 66654
No 35
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=28.12 E-value=78 Score=35.47 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHHHHhhhhhHHHHHHHHhcc
Q 040848 372 SNRGGLMTAMVLLWVFMGLFAGYASARLYKMFK 404 (641)
Q Consensus 372 ~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~ 404 (641)
...+.+.+..-+.=+++.+++|+.|-|+-+..+
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 333444444334445677788888888766543
No 36
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=27.07 E-value=3e+02 Score=29.54 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhhcCccEEeccccCCCCCcccee-------eeeccchHHH--H-H
Q 040848 287 MIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLC-------VYVGTGVQIF--G-M 356 (641)
Q Consensus 287 ~ivl~L~~~v~~Il~R~l~~Di~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls-------~lvG~G~Qll--~-~ 356 (641)
.-+++|.+.+.+...-++-+|..-|.+-.|++++....++-++...=- +|+-...++ +++|..++.. . .
T Consensus 45 ~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~-k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~ 123 (303)
T COG1575 45 VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSM-KPALILSLALFLLAGLALLGVILAALSDWLV 123 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444555555556666677777766666544433333344443322100 121111111 1222221111 0 1
Q ss_pred HHHHHHHHHhhccC---CCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchh
Q 040848 357 TLVTMIFALLGFLS---PSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWK 409 (641)
Q Consensus 357 ~~~~l~~a~~g~ls---p~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk 409 (641)
..+.++..+.|.++ |..-|..--.-++.++++|.++ +.+..|-+-+.-.|-
T Consensus 124 l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~--v~g~~yiqt~~~~~~ 177 (303)
T COG1575 124 LLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLI--VLGAYYIQTGRLSWA 177 (303)
T ss_pred HHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHH--HHHHHHHhcccchHH
Confidence 22222333344443 2233444445566777777766 666677664444444
No 37
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=25.76 E-value=1.7e+02 Score=32.38 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 375 GGLMTAMVLLWVFMGLFAGYASARLY 400 (641)
Q Consensus 375 g~l~t~~i~~y~~~~~isGy~S~~~y 400 (641)
|.+.....+.-++++.++|+.+.|+.
T Consensus 300 g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 300 GLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334455566666666553
No 38
>PRK12307 putative sialic acid transporter; Provisional
Probab=25.63 E-value=2.2e+02 Score=30.70 Aligned_cols=24 Identities=4% Similarity=-0.068 Sum_probs=15.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhcc
Q 040848 381 MVLLWVFMGLFAGYASARLYKMFK 404 (641)
Q Consensus 381 ~i~~y~~~~~isGy~S~~~yk~~~ 404 (641)
....+.+.+.++....+++-+.++
T Consensus 271 ~~~~~~~~~~~g~~~~g~l~dr~~ 294 (426)
T PRK12307 271 LMTAAAFGTVLGNIVWGLCADRIG 294 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555667777777777776664
No 39
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=25.00 E-value=3.2e+02 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=13.7
Q ss_pred HHHHHhhhhhhhhhhhhccC
Q 040848 453 FLWFGISVPLVFVGSYLGFK 472 (641)
Q Consensus 453 ~lw~~vs~PL~~iG~~~g~k 472 (641)
.+++...+=..++|+++|.|
T Consensus 162 ~~~~~~t~v~~~iG~~iG~k 181 (189)
T TIGR02185 162 VIMIVLTAVAGIAGVLIGKK 181 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555667889999877
No 40
>MTH00086 CYTB cytochrome b; Provisional
Probab=24.71 E-value=1.6e+02 Score=32.16 Aligned_cols=101 Identities=18% Similarity=0.468 Sum_probs=61.5
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHh----------hhhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLF-IVFVILLITCAEITIV----------LCYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~-~~~~ilii~~a~vsI~----------~tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..+-+|.++ +++++.++|....+.- .+....+.-+++|--|+.-.-|++.+++.+| .+||-..|
T Consensus 18 ~~w~~Gsll~~~l~iQiiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~ 97 (355)
T MTH00086 18 YWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR 97 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccC
Confidence 446788775 4444555555433221 1122234567899999999999998888877 45554444
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 ~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.+..-.+..++++.-++..=...-|-.|-.||.++-.
T Consensus 98 ~~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~~V 134 (355)
T MTH00086 98 LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVV 134 (355)
T ss_pred CchHHHHhHHHHHHHHHHHHhhhhcccCchhHHHHHH
Confidence 4445555566666655555555556566666665543
No 41
>KOG4770 consensus NADH dehydrogenase subunit 1 [Energy production and conversion]
Probab=24.66 E-value=3.5e+02 Score=28.45 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=73.0
Q ss_pred cCccEEeccccCCCCCccceeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHH-HHHhhhhhHHHHHHHHh
Q 040848 324 TGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLW-VFMGLFAGYASARLYKM 402 (641)
Q Consensus 324 ~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y-~~~~~isGy~S~~~yk~ 402 (641)
.|=|++.-+=-|| .+....+-.++-|+-+..+.+.=..+-....+..-|-|-+.-.++... +.+-.+|||.|-.-|..
T Consensus 54 Dg~KL~~KE~l~P-~~sn~~lf~i~P~~s~~~~ll~w~~lPf~~~l~~lnig~lf~la~ssl~vy~ilisGw~SnskYa~ 132 (315)
T KOG4770|consen 54 DGVKLLTKEQLTP-LNSNEVLFLIAPGISFVLSLLEWFVLPFFNVLISLNIGLLFFLAISSLAVYTILISGWSSNSKYAF 132 (315)
T ss_pred HHHHHHhcCCCCC-CcCCceeeeeccHHHHHHHHHHHhhcCccchhhhhhHHHHHHHHHhhhhhhhheeeecccCchhHH
Confidence 4567655554444 444445556778887765543322222222222234444333322222 33456899999999999
Q ss_pred ccCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhh---hhhhhhhccCCCCCCCC
Q 040848 403 FKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPL---VFVGSYLGFKKPAIEDP 479 (641)
Q Consensus 403 ~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL---~~iG~~~g~k~~~~~~P 479 (641)
.||-|=...++-.-..+-.+++.+.+..|...... =+.+-.-+ =|..+..|+ -++.+..-.+|.|++.|
T Consensus 133 lGaLRA~AQsISYEvsl~LilLsiii~~gs~n~~~------i~~aQ~~l--W~li~~~P~~~m~~issLAEtnR~PFDl~ 204 (315)
T KOG4770|consen 133 LGALRAAAQSISYEVSLALILLSIIILSGSFNLSD------IFVAQFNL--WLLIILFPFAIMFFISSLAETNRAPFDLP 204 (315)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHcCCcchHH------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 99865433333322233333333333322221100 00111111 134456676 44455555678888877
Q ss_pred ccc
Q 040848 480 VKT 482 (641)
Q Consensus 480 ~~~ 482 (641)
-..
T Consensus 205 EgE 207 (315)
T KOG4770|consen 205 EGE 207 (315)
T ss_pred ccH
Confidence 443
No 42
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=24.17 E-value=1e+02 Score=34.11 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=11.7
Q ss_pred HHHHHHhhhhhHHHHHHHHhc
Q 040848 383 LLWVFMGLFAGYASARLYKMF 403 (641)
Q Consensus 383 ~~y~~~~~isGy~S~~~yk~~ 403 (641)
.++.+.++++..+.|.+-..+
T Consensus 296 ~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 296 FLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666665444
No 43
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=24.13 E-value=2e+02 Score=29.67 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=31.3
Q ss_pred eccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHH
Q 040848 347 VGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASAR 398 (641)
Q Consensus 347 vG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~ 398 (641)
||++.-++..+++..+|-.+||+ +.|+++--.||-..|+
T Consensus 157 vGnd~~F~~af~vAflFnwIGFl-------------ltycl~tT~agRYGA~ 195 (262)
T KOG4812|consen 157 VGNDGIFMWAFIVAFLFNWIGFL-------------LTYCLTTTHAGRYGAI 195 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHH-------------HHHHHHhhHhhhhhhh
Confidence 89999999999999999988875 5778876666666554
No 44
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=24.13 E-value=2.5e+02 Score=31.60 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=38.4
Q ss_pred HhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHHHHHHHHHHHH-HHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhh
Q 040848 388 MGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNA-LIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVG 466 (641)
Q Consensus 388 ~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~-i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG 466 (641)
+++++||.|=++ |+|+|+..+.+... ...+-+ ..|...+. -+.-....++.+=++|.-|=.++|
T Consensus 304 G~Ll~GwlSDkl---fkgrR~p~~~i~~~----------~i~~~~~~~w~~~~~--~~~l~~~~l~~iGf~IyGPqmLiG 368 (448)
T COG2271 304 GTLLAGWLSDKL---FKGRRGPMALIFML----------LITASLVLYWLAPNG--SYLLDAILLFIIGFLIYGPQMLIG 368 (448)
T ss_pred HHHHHHHHHHHh---cccccchHHHHHHH----------HHHHHHHHHHcCCCc--cHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455666666655 67888775543211 111111 22332222 445566677888889999987777
Q ss_pred hhh
Q 040848 467 SYL 469 (641)
Q Consensus 467 ~~~ 469 (641)
-..
T Consensus 369 l~a 371 (448)
T COG2271 369 LAA 371 (448)
T ss_pred HHH
Confidence 654
No 45
>PRK03735 cytochrome b6; Provisional
Probab=23.69 E-value=1.2e+02 Score=31.03 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=54.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHh----------hhhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLF-IVFVILLITCAEITIV----------LCYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~-~~~~ilii~~a~vsI~----------~tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..|.+|.++ +++++.++|-...+.- .+....+.-+++|-.|+.-.-|++.+++.+| .++|-..|
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk 119 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK 119 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 346788765 4445555554433321 1111223448999999999888888887776 34443334
Q ss_pred --ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHH
Q 040848 593 --LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYAC 627 (641)
Q Consensus 593 --~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas 627 (641)
.++...+..++++.-++..=....|--|-.||.+.
T Consensus 120 ~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~wa~ 156 (223)
T PRK03735 120 KPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFAT 156 (223)
T ss_pred CCCCceeHHHHHHHHHHHHHHhccccCCcccchhhHH
Confidence 34555555666655444433333333444444443
No 46
>COG2322 Predicted membrane protein [Function unknown]
Probab=23.62 E-value=7.1e+02 Score=24.44 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhh--cCCCccChHHHHHHH-
Q 040848 376 GLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGE--QSSGAVPFGTMFALV- 452 (641)
Q Consensus 376 ~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~--~Ss~aipf~ti~~l~- 452 (641)
..+++....+.+..+.+|..-= .-|..+|-|..++|++.+-.+.++++..--.+.-.. +-++.+-..-.+.++
T Consensus 46 p~lnai~~~~s~~~llag~~~I----krg~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~ 121 (177)
T COG2322 46 PMLNAIFNSLSFIFLLAGWRLI----KRGNIEKHKRAMLTAFTLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILIT 121 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHH
Confidence 3456666666777777776332 235677777778887665544444443321111111 222222222222222
Q ss_pred -HHHHHhhhhhhhhhhhhccCCC
Q 040848 453 -FLWFGISVPLVFVGSYLGFKKP 474 (641)
Q Consensus 453 -~lw~~vs~PL~~iG~~~g~k~~ 474 (641)
.+...+++||.+.--+.|.|++
T Consensus 122 Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 122 HIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHhcch
Confidence 3456789999999999999875
No 47
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=23.42 E-value=3.5e+02 Score=23.31 Aligned_cols=65 Identities=17% Similarity=0.456 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhh
Q 040848 380 AMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGIS 459 (641)
Q Consensus 380 ~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs 459 (641)
.+++.+.+..++.|-+..++.|. --.-|.+.++++++++..... .-+..|..+.
T Consensus 6 fvlfi~Plli~i~sI~Gt~l~k~-------------~yimPivtf~i~Lil~~t~fn-------------~SFf~WvvvY 59 (82)
T PF10852_consen 6 FVLFILPLLIIIISIIGTYLFKK-------------VYIMPIVTFAISLILTFTLFN-------------PSFFFWVVVY 59 (82)
T ss_pred hHHHHhhHHHHHHHHHHhhhcce-------------eehHHHHHHHHHHHHHHHhhC-------------hHHHHHHHHH
Confidence 34556677777777777666442 234588888888888776642 2357899999
Q ss_pred hhhhhhhhhhc
Q 040848 460 VPLVFVGSYLG 470 (641)
Q Consensus 460 ~PL~~iG~~~g 470 (641)
.=+++++|++.
T Consensus 60 T~~s~i~S~iT 70 (82)
T PF10852_consen 60 TIFSFIVSYIT 70 (82)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 48
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.37 E-value=3.1e+02 Score=29.52 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHH
Q 040848 378 MTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFG 457 (641)
Q Consensus 378 ~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~ 457 (641)
+..++++|.++..+++|+-. .+|.+ ++|.+-+-.+..++-++-+++.+++-.+..+--++..+||-.-+ +-++
T Consensus 45 ligai~~~li~~~~~~~~~~-~~~~l--e~~i~k~~~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~i----i~vi 117 (356)
T COG4956 45 LIGAIIFFLISFWFGKYVLN-WLKRL--EEQIRKLPVTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTI----IPVI 117 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhH----HHHH
Confidence 45667777888777777654 45544 44433333444455444444444443344334455566654322 2234
Q ss_pred hhhhhhhhhhhhccCCC
Q 040848 458 ISVPLVFVGSYLGFKKP 474 (641)
Q Consensus 458 vs~PL~~iG~~~g~k~~ 474 (641)
+++-|+++|.-+|.|+.
T Consensus 118 ~t~il~y~G~~~~~k~~ 134 (356)
T COG4956 118 LTIILAYFGFQLADKKR 134 (356)
T ss_pred HHHHHHHHhhHHhhhhh
Confidence 67777888888887654
No 49
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=23.31 E-value=3e+02 Score=30.84 Aligned_cols=110 Identities=24% Similarity=0.332 Sum_probs=67.3
Q ss_pred cceeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHH-Hhhhh-hHHHHHHHHhc--cCcchhhhhhhhh
Q 040848 341 GLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVF-MGLFA-GYASARLYKMF--KGTEWKRNTLKTA 416 (641)
Q Consensus 341 ~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~-~~~is-Gy~S~~~yk~~--~g~~Wk~~~~~t~ 416 (641)
.+.|--+|-|.-+..+++++.+++.+.-.+|+-- ..++++.+ +..++ +-+.+.+|..+ +.++|+..... +
T Consensus 134 ~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~-----~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~ 207 (528)
T KOG0253|consen 134 GLSADTIGRRKGFNLTFLVTGVFGVISGASPNFA-----SLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-F 207 (528)
T ss_pred heehhhhhcchhhhhhHHHHHHHHHhhcCCCCee-----hhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-H
Confidence 3455566777777788888888887766666532 22334433 33344 44677788765 46889875544 6
Q ss_pred chhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhhhhh
Q 040848 417 FMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYL 469 (641)
Q Consensus 417 ~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~ 469 (641)
.-.||-++ -|.++|..-+.. ..=-+|++.++||.++--+.
T Consensus 208 ~waig~v~-----ea~law~vm~~~--------gwr~~l~~~~~pl~~~a~f~ 247 (528)
T KOG0253|consen 208 FWAIGQVF-----EALLAWGVMSNF--------GWRYLLFTSSTPLMFAARFL 247 (528)
T ss_pred HHHHHHHH-----HHHHHHHHHHhh--------hHHHHHHHHHhHHHHHHHHH
Confidence 66666654 345555543332 23356778889988875544
No 50
>MTH00034 CYTB cytochrome b; Validated
Probab=22.40 E-value=1.5e+02 Score=32.76 Aligned_cols=98 Identities=21% Similarity=0.364 Sum_probs=57.8
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHhhhhhh-------------cccCCCceeeheecccchhHHHHHHH-----Hhhhe
Q 040848 529 FYYIFGFLFIV-FVILLITCAEITIVLCYFQ-------------LCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYF 589 (641)
Q Consensus 529 ~yy~fgfL~~~-~~ilii~~a~vsI~~tY~~-------------L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 589 (641)
..|.+|.++.. +++.++|.... ..|++ .+.-+++|.-|+.-.-|++.+++++| .++|-
T Consensus 29 ~~~~~G~ll~~~~~~qiiTG~~L---~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~g 105 (379)
T MTH00034 29 IWWNFGSLLGLCLIIQIITGIFL---AMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYG 105 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCccchHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678887644 44445554322 22332 23456899999999989888887766 34444
Q ss_pred eeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 590 FTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 590 ~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
..|.+..-.+..++++.-+...=...-|-.|-.||.+.-.
T Consensus 106 sy~~~~~W~~G~~l~~l~~~~af~Gy~Lpw~q~s~w~~~v 145 (379)
T MTH00034 106 SYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATV 145 (379)
T ss_pred ccCCchHHHHhHHHHHHHHHHHHhhcCcchhhhhhHHHHH
Confidence 4444444445556666555555555555566666666543
No 51
>MTH00145 CYTB cytochrome b; Provisional
Probab=22.09 E-value=1.3e+02 Score=33.12 Aligned_cols=101 Identities=18% Similarity=0.318 Sum_probs=58.9
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHhh----------hhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFIV-FVILLITCAEITIVL----------CYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~~-~~ilii~~a~vsI~~----------tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..|-||.++.. +++.++|....+.-- +....+.-+++|..|+.-.-|++.+++.+| .+||--.|
T Consensus 30 ~~w~~G~ll~~~~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~ 109 (379)
T MTH00145 30 IWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYL 109 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 45778877644 444454443222111 111223457899999999999999888777 34554444
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 ~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
....-.+..++++.-++..=...-|-.|-.+|.++-.
T Consensus 110 ~~~~W~~Gv~l~~l~~~~af~GYvLpw~q~s~w~~~v 146 (379)
T MTH00145 110 MQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATV 146 (379)
T ss_pred CchHHHHhHHHHHHHHHHHHHhhccCccccchHHHHH
Confidence 4444555556666555555555555566666665543
No 52
>MTH00016 CYTB cytochrome b; Validated
Probab=21.41 E-value=1.7e+02 Score=32.37 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=53.9
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHhh----------hhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFI-VFVILLITCAEITIVL----------CYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~-~~~ilii~~a~vsI~~----------tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..|-||.++. ++++.++|....+.-- +....+.-+++|..|+.-.-|++.+++.+| .+||--.|
T Consensus 30 ~~w~~Gsll~~~~~~qiitG~~L~~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~ 109 (378)
T MTH00016 30 IWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYF 109 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4577888764 4444455443222111 111123457899999999999998888777 34444444
Q ss_pred ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 040848 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACF 628 (641)
Q Consensus 593 ~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~ 628 (641)
.+-.-.+..++++.-++..=...-|-.|-.+|.++-
T Consensus 110 ~~~~W~~Gv~l~~l~m~~af~GYvLpw~q~s~w~a~ 145 (378)
T MTH00016 110 LMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGAT 145 (378)
T ss_pred cchHHHhhHHHHHHHHHHHHhhhccchhhhhHHHHH
Confidence 333344444555444444433444444444554443
No 53
>COG3371 Predicted membrane protein [Function unknown]
Probab=21.14 E-value=6.7e+02 Score=24.84 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchhhhhhhhhchhhHHHHHHHHHHHHHHH
Q 040848 356 MTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIW 435 (641)
Q Consensus 356 ~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk~~~~~t~~l~P~~~~~i~~~lN~i~~ 435 (641)
+.+..++++++|.+.... .--.-..+.+|+++.....-.|.+.++..+..-|.. .....++|..++. .
T Consensus 82 l~is~lfLaLVGVFpEgt-~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~--~i~i~~~~l~lf~---------~ 149 (181)
T COG3371 82 LIISGLFLALVGVFPEGT-PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLI--AISIGIFSLALFI---------L 149 (181)
T ss_pred HHHHHHHHHheeeCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHHH---------h
Confidence 455678889999985433 333334455566666666667777666532222221 1112222222221 3
Q ss_pred hhcCCCccChHHHHHHHHHHHHh
Q 040848 436 GEQSSGAVPFGTMFALVFLWFGI 458 (641)
Q Consensus 436 ~~~Ss~aipf~ti~~l~~lw~~v 458 (641)
....+-|+|=.--..++..|..+
T Consensus 150 ~~~~gvAv~E~i~i~~i~i~~i~ 172 (181)
T COG3371 150 IKWVGVAVPETIGIVLILIWVII 172 (181)
T ss_pred ccCCccchHHHHHHHHHHHHHHH
Confidence 34455566666555666666544
No 54
>smart00767 DCD DCD is a plant specific domain in proteins involved in development and programmed cell death. The domain is shared by several proteins in the Arabidopsis and the rice genomes, which otherwise show a different protein architecture. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone.
Probab=21.07 E-value=48 Score=30.98 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=44.3
Q ss_pred EEeccccCCCCccccccc--cC--C--cCCCcccCCCCCcc-ceecCCceeeCceEEEeccccccccceeeecCHHHHHH
Q 040848 47 KVNKLSSTKTQLPYDYYF--LK--Y--CKPAKIVNSAENLG-EVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKN 119 (641)
Q Consensus 47 ~vNkl~s~~~~~~Y~Yy~--lp--f--C~p~~~~~~~~slG-eiL~Gdr~~~S~y~i~f~~~~~c~~lC~~~~~~~~~~~ 119 (641)
+|-+|++..+..-|||.+ |. | +... ..|+- +...|++-..=|.+++|.....|.+|.+ ++
T Consensus 33 ~V~~IkpG~~LFLfn~~~r~L~GifeA~S~G-----~~ni~p~Af~~~~~s~fPaQVrf~i~~~C~PL~E-----~~--- 99 (132)
T smart00767 33 FVRNIKPGLPLFLYNYDTRKLHGIFEATSFG-----GLNIDPNAFEGKKESRFPAQVRFRIRKDCKPLPE-----SE--- 99 (132)
T ss_pred hhheeCCCCEEEEEecCCceeeeEEEeccCC-----cCCcChhHhcCCCCCccCcEEEEEEeeeecCCCH-----HH---
Confidence 467788887888888875 32 2 1111 11221 2233443233367899999999988753 22
Q ss_pred HHHHHhhcceE
Q 040848 120 FKEKIDDEYRV 130 (641)
Q Consensus 120 ~~~~I~~~Y~~ 130 (641)
++.+|++||..
T Consensus 100 f~~aI~~nY~~ 110 (132)
T smart00767 100 FRSAILENYDG 110 (132)
T ss_pred HHHHHHHhCcC
Confidence 89999999954
No 55
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=21.03 E-value=3e+02 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHHHHhhhhhHHHHHHHHhccCcchhh
Q 040848 383 LLWVFMGLFAGYASARLYKMFKGTEWKR 410 (641)
Q Consensus 383 ~~y~~~~~isGy~S~~~yk~~~g~~Wk~ 410 (641)
..+.+.+...|...+-+||..+++++|+
T Consensus 74 ~~~~l~~~l~gl~~g~~~~~~~~~~~~~ 101 (172)
T PF12822_consen 74 PGFTLPAALFGLIAGLLYKKLKKKSKKR 101 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SS-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 6788888888999998998877777664
No 56
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=20.45 E-value=5.6e+02 Score=22.10 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.9
Q ss_pred HhhhhhhhhhhhhccCCCCCCCCcc
Q 040848 457 GISVPLVFVGSYLGFKKPAIEDPVK 481 (641)
Q Consensus 457 ~vs~PL~~iG~~~g~k~~~~~~P~~ 481 (641)
.+.+-+++.|.+-+.|.+++++|..
T Consensus 81 l~~~v~~I~~~~~a~~g~~~~~P~~ 105 (109)
T PF09685_consen 81 LLSLVLSIIGAIKANKGEPYRYPFI 105 (109)
T ss_pred HHHHHHHHHHHHHHHCCCeeecCee
Confidence 4556667788888888777777754
No 57
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=20.09 E-value=2e+02 Score=28.83 Aligned_cols=101 Identities=22% Similarity=0.415 Sum_probs=59.2
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHh----------hhhhhcccCCCceeeheecccchhHHHHHHHH-----hhheeee
Q 040848 529 FYYIFGFLFI-VFVILLITCAEITIV----------LCYFQLCSEDYHWWWRSYLTAGSSALYLFLYS-----IFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~-~~~ilii~~a~vsI~----------~tY~~L~~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~ 592 (641)
..|.+|+++. ++++.++|-...+.- .+..-...-+++|..|+.-.-|++.+++++|. ++|-..|
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~gsY~ 100 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYK 100 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567887754 455555554333221 11112234668999999998888888877662 3332233
Q ss_pred --ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 --LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 --~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.+....+..++++.-+...=....|-.|-.||.+.-.
T Consensus 101 ~pre~~W~~G~~l~~l~~~~af~GY~Lpw~q~s~w~~~v 139 (200)
T cd00284 101 KPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATV 139 (200)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHH
Confidence 2555555666666665555555556666666666544
Done!