Query 040848
Match_columns 641
No_of_seqs 140 out of 651
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_C Cytochrome B-C1 complex 35.7 57 0.0019 34.6 6.6 101 529-629 28-146 (385)
2 2knc_B Integrin beta-3; transm 35.6 19 0.00064 29.5 2.3 57 276-338 7-68 (79)
3 2qjy_A Cytochrome B; cytochrom 34.6 42 0.0014 36.3 5.5 101 529-629 43-161 (445)
4 1vf5_A Cytochrome B6; photosyn 28.1 44 0.0015 32.6 3.9 99 529-627 32-148 (215)
5 1pw4_A Glycerol-3-phosphate tr 25.5 75 0.0026 32.5 5.5 26 378-403 290-315 (451)
6 3o7q_A L-fucose-proton symport 25.1 41 0.0014 34.5 3.4 25 381-405 300-324 (438)
7 1pp9_C Cytochrome B; cytochrom 21.0 71 0.0024 33.8 4.1 69 561-629 72-145 (379)
8 4f4l_A ION transport protein; 14.4 1.4E+02 0.0047 25.5 3.8 43 346-388 3-50 (112)
9 3tlw_A GLR4197 protein, GLIC; 12.6 2.7E+02 0.0092 28.0 6.0 42 350-392 202-243 (321)
10 4ev6_A Magnesium transport pro 11.9 1.1E+02 0.0038 31.3 2.8 29 445-473 275-303 (339)
No 1
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=35.66 E-value=57 Score=34.59 Aligned_cols=101 Identities=11% Similarity=0.211 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHh----------hhhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFIVFV-ILLITCAEITIV----------LCYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~~~~-ilii~~a~vsI~----------~tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..+-||.++...+ +.++|-...+.- .+-...+.-||+|-.|+.-.-|++.+++.+| .+||--.|
T Consensus 28 ~~w~fGsll~~~l~iqi~TGifLam~Y~p~~~~Af~Sv~~I~~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~ 107 (385)
T 3cx5_C 28 YWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYR 107 (385)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHeeeeCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3445888776544 445444332211 1111123568999999999999999988887 36665555
Q ss_pred --ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 --LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 --~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.+....+..++++.-|+..=...-|=-|-.+|.++-.
T Consensus 108 ~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatV 146 (385)
T 3cx5_C 108 SPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATV 146 (385)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHH
T ss_pred CCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHH
Confidence 5666677778887777777777777777777776654
No 2
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.62 E-value=19 Score=29.49 Aligned_cols=57 Identities=16% Similarity=0.457 Sum_probs=32.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhccchhhhhhhhhcCccEEeccccCCCC
Q 040848 276 QIHWFSIINSLMIVLFLSGMVAMIMMRTL-----YRDIANYNQLETQEEAQEETGWKLVHGDVFRAPT 338 (641)
Q Consensus 276 ~ihw~SIiNS~~ivl~L~~~v~~Il~R~l-----~~Di~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P~ 338 (641)
..+...|+-..+..++|.|++.+++.|.+ ||..+|+++ |+....|+.-....||+|.
T Consensus 7 ~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk------E~~~~~w~~~~NPlyk~~t 68 (79)
T 2knc_B 7 GPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE------ERARAKWDTANNPLYKEAT 68 (79)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTTTCCHHHHCS
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcccccCCCCCccCCc
Confidence 34556666666666677777776666644 333444432 2334457655555677664
No 3
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=34.62 E-value=42 Score=36.28 Aligned_cols=101 Identities=16% Similarity=0.346 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHh----------hhhhhcccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFIVFV-ILLITCAEITIV----------LCYFQLCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~~~~-ilii~~a~vsI~----------~tY~~L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..+-||.++...+ +.++|-...+.- .+-...+.-||+|-.|+.-.-|++.+++.+| .+||--.|
T Consensus 43 ~~w~fGsll~~~l~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~ 122 (445)
T 2qjy_A 43 WMWIWGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYK 122 (445)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3455888776544 445444332211 1111123468999999999999999988887 36664445
Q ss_pred --ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 593 --LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 593 --~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.+....+..++++.-|+..=...-|=-|-.+|.++-.
T Consensus 123 ~Pr~~~W~~Gv~l~ll~m~taF~GYvLPwgQmSfWgatV 161 (445)
T 2qjy_A 123 APREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATV 161 (445)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred CCccceeeehHHHHHHHHHHHHHheeccCCccchHHHHH
Confidence 5666667777777777776666666677777766654
No 4
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=28.08 E-value=44 Score=32.55 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHh------hhhh---hc-ccCCCceeeheecccchhHHHHHHH-----Hhhheeee
Q 040848 529 FYYIFGFLFIVF-VILLITCAEITIV------LCYF---QL-CSEDYHWWWRSYLTAGSSALYLFLY-----SIFYFFTK 592 (641)
Q Consensus 529 ~yy~fgfL~~~~-~ilii~~a~vsI~------~tY~---~L-~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~~~~ 592 (641)
..+.||.++... ++.++|-...+.- ..|- ++ +.-||+|--|+.-.-|++.+++.+| .+||--.+
T Consensus 32 ~~w~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~ 111 (215)
T 1vf5_A 32 IFYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFK 111 (215)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345688876654 4445544332211 0111 12 3458999999999999999988887 35554444
Q ss_pred --ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHH
Q 040848 593 --LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYAC 627 (641)
Q Consensus 593 --~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas 627 (641)
.+....+..++++.-|+..=...-|=.|-.+|.++
T Consensus 112 ~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wga 148 (215)
T 1vf5_A 112 KPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAV 148 (215)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHH
T ss_pred cCCCceeHhHHHHHHHHHHHHHcccccCCCccchhhH
Confidence 34455555566555554444444444444555444
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=25.53 E-value=75 Score=32.54 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhc
Q 040848 378 MTAMVLLWVFMGLFAGYASARLYKMF 403 (641)
Q Consensus 378 ~t~~i~~y~~~~~isGy~S~~~yk~~ 403 (641)
.......+.+++++++..++++.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 290 SSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667778888888887776
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=25.09 E-value=41 Score=34.48 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhccC
Q 040848 381 MVLLWVFMGLFAGYASARLYKMFKG 405 (641)
Q Consensus 381 ~i~~y~~~~~isGy~S~~~yk~~~g 405 (641)
....+.+.+.++..+++++-+.++.
T Consensus 300 ~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 300 YLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444556667777777777666643
No 7
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=20.96 E-value=71 Score=33.76 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=45.7
Q ss_pred cCCCceeeheecccchhHHHHHHHH-----hhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 561 SEDYHWWWRSYLTAGSSALYLFLYS-----IFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 561 ~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
.-||+|-.|+.-.-|++.+++.+|- +||--.|..-...+..++++.-|+..=...-|=-|-.+|.++-.
T Consensus 72 dV~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatV 145 (379)
T 1pp9_C 72 DVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATV 145 (379)
T ss_dssp HSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCcceehhhHHHHHHHHHHHheeeeccCcchhHHHHHH
Confidence 4589999999999999999888873 55544444335555566666666555555555556666655543
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=14.43 E-value=1.4e+02 Score=25.54 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=24.0
Q ss_pred eeccchHHHHHHHHHHHHHHhhcc-----CCCCCchHHHHHHHHHHHH
Q 040848 346 YVGTGVQIFGMTLVTMIFALLGFL-----SPSNRGGLMTAMVLLWVFM 388 (641)
Q Consensus 346 lvG~G~Qll~~~~~~l~~a~~g~l-----sp~~rg~l~t~~i~~y~~~ 388 (641)
+.|.|-=.+++.++..++|++|.. .|.+-+++..+++.+|.++
T Consensus 3 ~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~ 50 (112)
T 4f4l_A 3 HMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVM 50 (112)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHH
Confidence 345555566666777777877754 3344466667777666554
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=12.57 E-value=2.7e+02 Score=27.99 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhh
Q 040848 350 GVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFA 392 (641)
Q Consensus 350 G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~is 392 (641)
-+|+++=.+++++++.+++. |...|+-++..+........+.
T Consensus 202 ~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~ 243 (321)
T 3tlw_A 202 IPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFN 243 (321)
T ss_dssp HHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHH
Confidence 35777777788889999999 8777766665555444443333
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=11.95 E-value=1.1e+02 Score=31.31 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhccCC
Q 040848 445 FGTMFALVFLWFGISVPLVFVGSYLGFKK 473 (641)
Q Consensus 445 f~ti~~l~~lw~~vs~PL~~iG~~~g~k~ 473 (641)
-..++..+.+|..|-+|++++.|++|.+.
T Consensus 275 ~N~~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 275 MNQIMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 35667888999999999999999999864
Done!