Query 040848
Match_columns 641
No_of_seqs 140 out of 651
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 20:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040848.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040848hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 24.5 47 0.0034 31.2 6.2 28 380-407 289-316 (447)
2 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 21.1 22 0.0016 28.1 2.3 27 36-64 31-57 (95)
3 d1ppjc2 f.21.1.2 (C:15-260) Mi 19.9 36 0.0027 31.4 4.0 98 529-629 15-131 (246)
4 d2iuba2 f.17.3.1 (A:286-349) M 13.0 49 0.0035 23.6 2.3 26 448-473 5-30 (64)
5 d1pv7a_ f.38.1.2 (A:) Lactose 12.0 29 0.0021 31.9 0.8 26 379-404 262-287 (417)
6 d1sdia_ a.198.1.1 (A:) Hypothe 10.6 49 0.0036 29.8 1.9 23 388-410 169-191 (213)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 9.0 2.1E+02 0.016 26.0 6.0 101 529-632 28-149 (261)
8 d1q90b_ f.21.1.2 (B:) Cytochro 7.3 2.3E+02 0.016 25.0 5.1 100 529-630 29-148 (212)
9 d1gy7a_ d.17.4.2 (A:) Nuclear 7.2 41 0.003 27.1 -0.2 12 323-335 106-117 (121)
10 d2asba1 b.40.4.5 (A:108-183) S 6.6 1.4E+02 0.0098 22.1 2.6 19 36-54 48-66 (76)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.50 E-value=47 Score=31.23 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhccCcc
Q 040848 380 AMVLLWVFMGLFAGYASARLYKMFKGTE 407 (641)
Q Consensus 380 ~~i~~y~~~~~isGy~S~~~yk~~~g~~ 407 (641)
....++.+.+.++...++++-+.++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (447)
T d1pw4a_ 289 WAYFLYEYAGIPGTLLCGWMSDKVFRGN 316 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred hhhhcchhhhhhhhhhhhhhhhhccccc
Confidence 3344455566666666666666555443
No 2
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.12 E-value=22 Score=28.10 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=21.1
Q ss_pred CCCCCCCceEEEEeccccCCCCccccccc
Q 040848 36 RDFQRHDPLNVKVNKLSSTKTQLPYDYYF 64 (641)
Q Consensus 36 ~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~ 64 (641)
+.|++||.|.+.+|- |...-+|+.+|+
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred eeccCCCEEEEEecC--CeecCccceeec
Confidence 689999999998775 335567888874
No 3
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.95 E-value=36 Score=31.35 Aligned_cols=98 Identities=20% Similarity=0.348 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhhh-------------cccCCCceeeheecccchhHHHHHHH-----Hhhhe
Q 040848 529 FYYIFGFLFIVFVIL-LITCAEITIVLCYFQ-------------LCSEDYHWWWRSYLTAGSSALYLFLY-----SIFYF 589 (641)
Q Consensus 529 ~yy~fgfL~~~~~il-ii~~a~vsI~~tY~~-------------L~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 589 (641)
.+|.+|.++...+++ ++|-.. +..|+. .+.-+++|-.|+.-.-|++..++.+| .+||-
T Consensus 15 ~~w~~G~ll~~~~~iqiiTGi~---L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~ 91 (246)
T d1ppjc2 15 SWWNFGSLLGICLILQILTGLF---LAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYG 91 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHH---HHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhc
Confidence 456688877665544 443322 222332 23467899999998888888877766 34443
Q ss_pred eeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 040848 590 FTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFW 629 (641)
Q Consensus 590 ~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~ 629 (641)
..|..-.-.+..++|+.-++..=...-|=.|-.||.|+-.
T Consensus 92 sy~~~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V 131 (246)
T d1ppjc2 92 SYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATV 131 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHeeccCCCcchhHHHHHH
Confidence 3343323334455555555555555555556666665544
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.99 E-value=49 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhccCC
Q 040848 448 MFALVFLWFGISVPLVFVGSYLGFKK 473 (641)
Q Consensus 448 i~~l~~lw~~vs~PL~~iG~~~g~k~ 473 (641)
.+..+..+-.+-+|++++.|++|.+-
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 34566777778899999999999753
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.01 E-value=29 Score=31.86 Aligned_cols=26 Identities=0% Similarity=-0.076 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhcc
Q 040848 379 TAMVLLWVFMGLFAGYASARLYKMFK 404 (641)
Q Consensus 379 t~~i~~y~~~~~isGy~S~~~yk~~~ 404 (641)
........+.+.+++..++++-+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~ 287 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHC
T ss_pred cccccccccccccchhhhhhhhcccc
Confidence 33444555666777777777766554
No 6
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=10.64 E-value=49 Score=29.84 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.9
Q ss_pred HhhhhhHHHHHHHHhccCcchhh
Q 040848 388 MGLFAGYASARLYKMFKGTEWKR 410 (641)
Q Consensus 388 ~~~isGy~S~~~yk~~~g~~Wk~ 410 (641)
+-.+||-=|+.++++.||++|+.
T Consensus 169 ALLLAGIRaavLWrQ~GG~Rwql 191 (213)
T d1sdia_ 169 ATLLAGIRAAVLWHQVGGGRLQL 191 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhH
Confidence 45678889999999999999974
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.98 E-value=2.1e+02 Score=26.02 Aligned_cols=101 Identities=10% Similarity=0.230 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhc-------------ccCCCceeeheecccchhHHHHHHH-----Hhhhe
Q 040848 529 FYYIFGFLFIVFVIL-LITCAEITIVLCYFQL-------------CSEDYHWWWRSYLTAGSSALYLFLY-----SIFYF 589 (641)
Q Consensus 529 ~yy~fgfL~~~~~il-ii~~a~vsI~~tY~~L-------------~~Edy~WwWrSF~~~gs~~~y~flY-----si~y~ 589 (641)
..|-+|.++...+++ ++|-.. +..|++- +.-+++|-.|+.-.-|++.+++.+| .+||-
T Consensus 28 ~~w~~G~ll~~~~~iqiiTGi~---L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~g 104 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTGIF---MAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYG 104 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHH---HHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhc
Confidence 445678877665544 444322 2233332 2345799999999999988887776 23333
Q ss_pred eee--ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040848 590 FTK--LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVR 632 (641)
Q Consensus 590 ~~~--~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~Fv~ 632 (641)
..| .++.-.+..++++.-++..=....|-.|-.+|.++-....
T Consensus 105 sy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~ 149 (261)
T d3cx5c2 105 SYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITN 149 (261)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHH
T ss_pred cccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHH
Confidence 333 2455566677777777777777788888888887766544
No 8
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.33 E-value=2.3e+02 Score=25.03 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-------------ccCCCceeeheecccchhHHHHHHHH-----hhhee
Q 040848 529 FYYIFGFLFIVFVILLITCAEITIVLCYFQL-------------CSEDYHWWWRSYLTAGSSALYLFLYS-----IFYFF 590 (641)
Q Consensus 529 ~yy~fgfL~~~~~ilii~~a~vsI~~tY~~L-------------~~Edy~WwWrSF~~~gs~~~y~flYs-----i~y~~ 590 (641)
..|.+|.++...+++-+++. -.+..|++- +.-+++|--|+.-.-|+...++.+|- .+|-.
T Consensus 29 ~~~~~Gsll~~~~~iqi~TG--i~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gs 106 (212)
T d1q90b_ 29 IFYCIGGITFTCFLVQVATG--FAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGG 106 (212)
T ss_dssp SGGGHHHHHHHHHHHHHHHH--HHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCc
Confidence 45678887766555544332 122233332 23478999999998888888776662 22221
Q ss_pred ee--ecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 040848 591 TK--LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWF 630 (641)
Q Consensus 591 ~~--~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~F 630 (641)
.| .+..-.+..++++.-++..=...-|-.|-.+|.|+-..
T Consensus 107 yk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 107 FKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIV 148 (212)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHH
T ss_pred ccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 22 23445555566665555555555666666666665543
No 9
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.22 E-value=41 Score=27.10 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=8.7
Q ss_pred hcCccEEeccccC
Q 040848 323 ETGWKLVHGDVFR 335 (641)
Q Consensus 323 e~GWKlvhgDVFR 335 (641)
+.||+ |+.|+||
T Consensus 106 ~~~y~-I~nD~FR 117 (121)
T d1gy7a_ 106 GNSYY-VFNDIFR 117 (121)
T ss_dssp TTEEE-EEEEEEE
T ss_pred CCEEE-EEEEEEE
Confidence 45687 6788887
No 10
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.62 E-value=1.4e+02 Score=22.09 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=16.7
Q ss_pred CCCCCCCceEEEEeccccC
Q 040848 36 RDFQRHDPLNVKVNKLSST 54 (641)
Q Consensus 36 ~~Y~~Gd~V~l~vNkl~s~ 54 (641)
..|+.||.|.+++-++...
T Consensus 48 E~y~~Gdrik~~i~~V~~~ 66 (76)
T d2asba1 48 ESYEHGNRLRCYVVGVTRG 66 (76)
T ss_dssp CCCCTTCEEEEEEEEEECC
T ss_pred cccCCCCEEEEEEEEEEec
Confidence 5699999999999998755
Done!