BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040849
(809 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 165/559 (29%), Positives = 244/559 (43%), Gaps = 59/559 (10%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
P +G+ S L+ LD+ N + + I L+ L + +N F G IP +L+ L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 153 RLGFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI 211
L N+ G++P L G+ L L + N+ G +P FG+ S LE L+ S+N F G++
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 212 P-KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLS-SLNYFEFPVNQLQGSLPSDLGFTLPN 269
P TL +++ ++ + N+ SGE+P S+ NLS SL + N G + +L N
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 270 -LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHL 327
L+ L L N FTG IP ++SN S L+ L + N SG +P S G+L KL+ + + +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 328 GNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP 387
+L +V + LE L ++ N+ G +P + N T L + + NN+L
Sbjct: 455 EGEIPQELMYVKT------LETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRL----- 502
Query: 388 SXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
TG IP IG L L L L N F G IP+ +G+ LI L
Sbjct: 503 -------------------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543
Query: 448 SFDKNMLEGSIPSSLGK-----CQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQ 502
+ N+ G+IP+++ K E G +L + + Q
Sbjct: 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603
Query: 503 LN----------------GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
LN G F ++ LD+S N LSG IP +GS L L +
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIK 606
N G+IP LRG+ LDLS N L GRIP+ + G +P
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Query: 607 GVFSNSSAVSLDGNDNLCG 625
G F N LCG
Sbjct: 724 GQFETFPPAKFLNNPGLCG 742
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 161/545 (29%), Positives = 240/545 (44%), Gaps = 52/545 (9%)
Query: 52 VLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXX-------------------XXXXXXX 92
+L W+ +++ C + GVTC R +VT+
Sbjct: 29 LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 86
Query: 93 PHI-GNLSFLRV------LDLKNNSFRNEIPQ--EIGYLFRLQFLWLDNNTFGGQIPDNI 143
HI G++S + LDL NS + +G L+FL + +NT P +
Sbjct: 87 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 144
Query: 144 SHCVNLESLR---LGFNELVGK--VPRKLGS-LSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
S + L SL L N + G V L +L+ LA+ N +SG + S +L
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNL 202
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
E L S+N F IP L ++ + NKLSG+ +I + L NQ G
Sbjct: 203 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASH-LMRLTIPINGFSGKVPSFGNLHK 316
+P L +L+ L+L EN+FTG IP +S A L L + N F G VP F
Sbjct: 262 PIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
L ++ +GE +++L+ L++L ++ N F G LPE++ NLS L L
Sbjct: 319 LLESLALSSNNFSGELP----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 377 VGNNQLFGNI-PSXXXXXXXXXXXXXXXNQ-FTGRIPGSIGDLHKLQRLGLQGNKFLGEI 434
+ +N G I P+ N FTG+IP ++ + +L L L N G I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 435 PSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSI 494
PSS+G+L+ L L NMLEG IP L + P+ + ++L+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN- 493
Query: 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
++ LS N+L G +P G L+NL +L +S N SG IP LG C L L +N N F G
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 555 IPSSF 559
IP++
Sbjct: 554 IPAAM 558
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 154/541 (28%), Positives = 233/541 (43%), Gaps = 97/541 (17%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLF-----RLQFLWLDNNTFGGQIPDNISHCVNLESL 152
L+ L VLDL NS +G++ L+ L + N G + ++S CVNLE L
Sbjct: 150 LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 205
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
+ N +P LG S L+ L + N LSG + + L++L+ S+NQFVG IP
Sbjct: 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPF----SIYNLSSL----NYFEFPV------------ 252
LK ++++ NK +GEIP + L+ L N+F V
Sbjct: 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 253 -----NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN-ASHLMRLTIPINGFSG 306
N G LP D + L+ L+L N+F+G +P S++N ++ L+ L + N FSG
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 307 KVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVG 366
P NL + ++ +L N + +L N S L L ++ N G +P ++G
Sbjct: 383 --PILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 367 NLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQ 426
+LS +LR L++ N L G IP N TG IP + + L + L
Sbjct: 440 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEV 486
N+ GEIP IG L L L N G+IP+ LG C+
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL------------------ 540
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE----IPNS--LGSC-- 538
I+LDL+ N NGT+P+ + K G ++ N ++G+ I N C
Sbjct: 541 -------IWLDLNTNLFNGTIPA--AMFKQSG--KIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 539 ---------VRLEQLG---------MNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580
+R EQL + + G+ +F + + LD+S N LSG IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 581 K 581
K
Sbjct: 650 K 650
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 165/559 (29%), Positives = 244/559 (43%), Gaps = 59/559 (10%)
Query: 93 PHIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESL 152
P +G+ S L+ LD+ N + + I L+ L + +N F G IP +L+ L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 153 RLGFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI 211
L N+ G++P L G+ L L + N+ G +P FG+ S LE L+ S+N F G++
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 212 P-KTLSQLKRMRFIGFGVNKLSGEIPFSIYNLS-SLNYFEFPVNQLQGSLPSDLGFTLPN 269
P TL +++ ++ + N+ SGE+P S+ NLS SL + N G + +L N
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 270 -LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP-SFGNLHKLQWVSISMNHL 327
L+ L L N FTG IP ++SN S L+ L + N SG +P S G+L KL+ + + +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 328 GNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIP 387
+L +V + LE L ++ N+ G +P + N T L + + NN+L
Sbjct: 452 EGEIPQELMYVKT------LETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRL----- 499
Query: 388 SXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIPSSIGNLTLLITL 447
TG IP IG L L L L N F G IP+ +G+ LI L
Sbjct: 500 -------------------TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 448 SFDKNMLEGSIPSSLGK-----CQXXXXXXXXXXXXXXXXPTEVIGLSSLSIYLDLSQNQ 502
+ N+ G+IP+++ K E G +L + + Q
Sbjct: 541 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 600
Query: 503 LN----------------GTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
LN G F ++ LD+S N LSG IP +GS L L +
Sbjct: 601 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 660
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPKYXXXXXXXXXXXXXXXHFEGEVPIK 606
N G+IP LRG+ LDLS N L GRIP+ + G +P
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 607 GVFSNSSAVSLDGNDNLCG 625
G F N LCG
Sbjct: 721 GQFETFPPAKFLNNPGLCG 739
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 161/545 (29%), Positives = 240/545 (44%), Gaps = 52/545 (9%)
Query: 52 VLSSWNYSRHFCQWKGVTCSPRHQRVTAXXXXXX-------------------XXXXXXX 92
+L W+ +++ C + GVTC R +VT+
Sbjct: 26 LLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN 83
Query: 93 PHI-GNLSFLRV------LDLKNNSFRNEIPQ--EIGYLFRLQFLWLDNNTFGGQIPDNI 143
HI G++S + LDL NS + +G L+FL + +NT P +
Sbjct: 84 SHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 141
Query: 144 SHCVNLESLR---LGFNELVGK--VPRKLGS-LSKLRTLAVHYNNLSGQIPSSFGNLSSL 197
S + L SL L N + G V L +L+ LA+ N +SG + S +L
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNL 199
Query: 198 EVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
E L S+N F IP L ++ + NKLSG+ +I + L NQ G
Sbjct: 200 EFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASH-LMRLTIPINGFSGKVPSFGNLHK 316
+P L +L+ L+L EN+FTG IP +S A L L + N F G VP F
Sbjct: 259 PIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
L ++ +GE +++L+ L++L ++ N F G LPE++ NLS L L
Sbjct: 316 LLESLALSSNNFSGELP----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 377 VGNNQLFGNI-PSXXXXXXXXXXXXXXXNQ-FTGRIPGSIGDLHKLQRLGLQGNKFLGEI 434
+ +N G I P+ N FTG+IP ++ + +L L L N G I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 435 PSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEVIGLSSLSI 494
PSS+G+L+ L L NMLEG IP L + P+ + ++L+
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN- 490
Query: 495 YLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN 554
++ LS N+L G +P G L+NL +L +S N SG IP LG C L L +N N F G
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 555 IPSSF 559
IP++
Sbjct: 551 IPAAM 555
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 154/541 (28%), Positives = 233/541 (43%), Gaps = 97/541 (17%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLF-----RLQFLWLDNNTFGGQIPDNISHCVNLESL 152
L+ L VLDL NS +G++ L+ L + N G + ++S CVNLE L
Sbjct: 147 LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFL 202
Query: 153 RLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIP 212
+ N +P LG S L+ L + N LSG + + L++L+ S+NQFVG IP
Sbjct: 203 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Query: 213 KTLSQLKRMRFIGFGVNKLSGEIPF----SIYNLSSL----NYFEFPV------------ 252
LK ++++ NK +GEIP + L+ L N+F V
Sbjct: 262 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 253 -----NQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISN-ASHLMRLTIPINGFSG 306
N G LP D + L+ L+L N+F+G +P S++N ++ L+ L + N FSG
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 307 KVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVG 366
P NL + ++ +L N + +L N S L L ++ N G +P ++G
Sbjct: 380 --PILPNLCQNPKNTLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 367 NLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQ 426
+LS +LR L++ N L G IP N TG IP + + L + L
Sbjct: 437 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXXXXXPTEV 486
N+ GEIP IG L L L N G+IP+ LG C+
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL------------------ 537
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE----IPNS--LGSC-- 538
I+LDL+ N NGT+P+ + K G ++ N ++G+ I N C
Sbjct: 538 -------IWLDLNTNLFNGTIPA--AMFKQSG--KIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 539 ---------VRLEQLG---------MNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIP 580
+R EQL + + G+ +F + + LD+S N LSG IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 581 K 581
K
Sbjct: 647 K 647
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 134/306 (43%), Gaps = 19/306 (6%)
Query: 31 NETDQLALLEFKAKVTHDPLEVLSSWNYSRHFCQ--WKGVTCSPRHQRVTAXXXXXXXXX 88
N D+ ALL+ K + + LSSW + C W GV C Q
Sbjct: 4 NPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 89 XXXXPH-----IGNLSFLRVLDLKN-NSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDN 142
P+ + NL +L L + N+ IP I L +L +L++ + G IPD
Sbjct: 62 LPK-PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSL-EVLS 201
+S L +L +N L G +P + SL L + N +SG IP S+G+ S L ++
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 202 ASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPS 261
S N+ G+IP T + L + F+ N L G+ S+ S N + ++ + SL
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA--SVLFGSDKNTQK--IHLAKNSLAF 235
Query: 262 DLGFT--LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQW 319
DLG NL L+L N+ G +P ++ L L + N G++P GNL +
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295
Query: 320 VSISMN 325
+ + N
Sbjct: 296 SAYANN 301
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 109/278 (39%), Gaps = 42/278 (15%)
Query: 163 VPRKLGSLSKLRTLAVH-YNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRM 221
+P L +L L L + NNL G IP + L+ L L + G IP LSQ+K +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 222 RFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT 281
+ F N LSG +P SI +L +L F N++ G++P G + + N+ T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 282 GPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSL 341
G IP P+F NL+ L +V +S N L E D S
Sbjct: 188 GKIP-----------------------PTFANLN-LAFVDLSRNML---EGDASVLFGSD 220
Query: 342 VNASRLEL----LGININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXXXXXXXX 397
N ++ L L ++ G LS L L + NN+++G +P
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVG---------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 398 XXXXXXNQFTGRIPGSIGDLHKLQRLGLQGNKFLGEIP 435
N G IP G+L + NK L P
Sbjct: 272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 4/222 (1%)
Query: 361 LPEAVGNLSTRLRILRVGN-NQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHK 419
+P ++ NL L L +G N L G IP +G IP + +
Sbjct: 68 IPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 420 LQRLGLQGNKFLGEIPSSIGNLTLLITLSFDKNMLEGSIPSSLGKCQXXXXXXXXXXXXX 479
L L N G +P SI +L L+ ++FD N + G+IP S G
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 480 XXXPTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCV 539
+L+ ++DLS+N L G FG KN + +++N L+ ++ +G
Sbjct: 187 TGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 540 RLEQLGMNGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPK 581
L L + N G +P + L+ + +L++S NNL G IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 67/147 (45%), Gaps = 29/147 (19%)
Query: 684 PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKRSIR-- 741
P L + R S + L A+D FS +N++G G FG VYKG L TLVAVKR
Sbjct: 18 PEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADG---TLVAVKRLKEER 74
Query: 742 -------------------HRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPK 782
HRNL+++ C + + LVY +M NGS+ L +
Sbjct: 75 XQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-----PTERLLVYPYMANGSVASCLRER 129
Query: 783 PEAPRNSNLLQRLSIAVDVASALDYLH 809
PE+ + +R IA+ A L YLH
Sbjct: 130 PESQPPLDWPKRQRIALGSARGLAYLH 156
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 684 PSALLASVLRVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKR----- 738
P L + R S + L A+D F +N++G G FG VYKG L LVAVKR
Sbjct: 10 PEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADG---XLVAVKRLKEER 66
Query: 739 ----------------SIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPK 782
HRNL+++ C + + LVY +M NGS+ L +
Sbjct: 67 TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-----PTERLLVYPYMANGSVASCLRER 121
Query: 783 PEAPRNSNLLQRLSIAVDVASALDYLH 809
PE+ + +R IA+ A L YLH
Sbjct: 122 PESQPPLDWPKRQRIALGSARGLAYLH 148
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 28/137 (20%)
Query: 693 RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKRS------------- 739
RV +L +AT+ F + LIG G FG VYKG+L VA+KR
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG---AKVALKRRTPESSQGIEEFET 84
Query: 740 -------IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL 792
RH +LV +I C + N+ L+Y++M NG+L+ L+ + +
Sbjct: 85 EIETLSFCRHPHLVSLIGFCD----ERNEM-ILIYKYMENGNLKRHLYGSDLPTMSMSWE 139
Query: 793 QRLSIAVDVASALDYLH 809
QRL I + A L YLH
Sbjct: 140 QRLEICIGAARGLHYLH 156
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 28/137 (20%)
Query: 693 RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVKRS------------- 739
RV +L +AT+ F + LIG G FG VYKG+L VA+KR
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDG---AKVALKRRTPESSQGIEEFET 84
Query: 740 -------IRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLL 792
RH +LV +I C + N+ L+Y++M NG+L+ L+ + +
Sbjct: 85 EIETLSFCRHPHLVSLIGFCD----ERNEM-ILIYKYMENGNLKRHLYGSDLPTMSMSWE 139
Query: 793 QRLSIAVDVASALDYLH 809
QRL I + A L YLH
Sbjct: 140 QRLEICIGAARGLHYLH 156
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 129/292 (44%), Gaps = 54/292 (18%)
Query: 117 QEIGYLFRLQFLWLDNNTFGGQIPD--NISHCVNLESLRLGFNELVGKVPRKLGSLSKLR 174
Q I YL L++L L+ G QI D +S+ V L +L +G N++ L +L+ LR
Sbjct: 60 QGIEYLTNLEYLNLN----GNQITDISPLSNLVKLTNLYIGTNKITD--ISALQNLTNLR 113
Query: 175 TLAVHYNNLSGQIP---------------------SSFGNLSSLEVLSASANQFVGQIPK 213
L ++ +N+S P S N + L L+ + ++ P
Sbjct: 114 ELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP- 172
Query: 214 TLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERL 273
++ L + + N++ P + +L+SL+YF VNQ+ P + N RL
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISPLA--SLTSLHYFTAYVNQITDITP------VANXTRL 223
Query: 274 N---LGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNG 330
N +G N+ T P ++N S L L I N S + + +L KL+ +++ N +
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTKLKXLNVGSNQIS-- 278
Query: 331 EKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL 382
D+ +N+L S+L L +N N G E +G L T L L + N +
Sbjct: 279 ---DISVLNNL---SQLNSLFLNNNQLGNEDXEVIGGL-TNLTTLFLSQNHI 323
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 7/131 (5%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEI-GYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
L+ LR+L L +N + +P I L L+ LW+ +N VNL LRL
Sbjct: 60 LTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK--- 213
N+L PR SL+KL L++ YN L F L+SL+ L NQ + ++P+
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177
Query: 214 -TLSQLKRMRF 223
L++LK ++
Sbjct: 178 DKLTELKTLKL 188
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 139 IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLE 198
IP NI + + L L N+L + L+KLR L ++ N L F L +LE
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 199 VLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGS 258
L + N+ QL + + N+L P +L+ L Y N+LQ S
Sbjct: 89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-S 147
Query: 259 LPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVP--SFGNLHK 316
LP + L +L+ L L NQ + + L L + N +VP +F +L K
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEK 206
Query: 317 LQWVSISMN 325
L+ + + N
Sbjct: 207 LKMLQLQEN 215
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 41/249 (16%)
Query: 184 SGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLS 243
G + S N +S++ S IP +L NKLS + + L+
Sbjct: 8 DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKL------DLQSNKLSSLPSKAFHRLT 61
Query: 244 SLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPING 303
L N+LQ +LP+ + L NLE L + +N+ +L L + N
Sbjct: 62 KLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 304 FSGKVPS-FGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLP 362
P F +L KL ++S+ N L + K + + SL L L NN +P
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL---KELRL----YNNQLKRVP 173
Query: 363 EAVGNLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIP-GSIGDLHKLQ 421
E + T L+ L++ NNQL R+P G+ L KL+
Sbjct: 174 EGAFDKLTELKTLKLDNNQL-------------------------KRVPEGAFDSLEKLK 208
Query: 422 RLGLQGNKF 430
L LQ N +
Sbjct: 209 MLQLQENPW 217
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 122 LFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPR----KLGSLSKLRTLA 177
L L L LD N P L L LG+NEL +P+ KL SL +LR
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRL-- 164
Query: 178 VHYNNLSGQIPS-SFGNLSSLEVLSASANQFVGQIPK-TLSQLKRMRFIGFGVN 229
YNN ++P +F L+ L+ L NQ + ++P+ L++++ + N
Sbjct: 165 --YNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 498 LSQNQLNGTLPSN-FGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556
L+ N+L TLP+ F LKNL L V++NKL V L +L ++ N + P
Sbjct: 68 LNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126
Query: 557 SSFSSLRGIENLDLSRNNLSGRIPK 581
F SL + L L N L +PK
Sbjct: 127 RVFDSLTKLTYLSLGYNELQS-LPK 150
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLR 153
+ NL+ LR L N ++ P+ L +L +L L N +L+ LR
Sbjct: 107 QLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 154 LGFNELVGKVPR-KLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
L +N + +VP L++L+TL + N L +F +L L++L N +
Sbjct: 164 L-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 24/122 (19%)
Query: 706 FSLENLIGAGSFGSVYKG-----------ILNHDDHETLV-------AVKRSIRHRNLVK 747
+++ IGAGSFG+V++ ++ D H V A+ + +RH N+V
Sbjct: 39 LNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
+ + Q + ++V E++ GSL LH K A + +RLS+A DVA ++Y
Sbjct: 99 FMGAVT----QPPNL-SIVTEYLSRGSLYRLLH-KSGAREQLDERRRLSMAYDVAKGMNY 152
Query: 808 LH 809
LH
Sbjct: 153 LH 154
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 24/122 (19%)
Query: 706 FSLENLIGAGSFGSVYKG-----------ILNHDDHETLV-------AVKRSIRHRNLVK 747
+++ IGAGSFG+V++ ++ D H V A+ + +RH N+V
Sbjct: 39 LNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVL 98
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDY 807
+ + Q + ++V E++ GSL LH K A + +RLS+A DVA ++Y
Sbjct: 99 FMGAVT----QPPNL-SIVTEYLSRGSLYRLLH-KSGAREQLDERRRLSMAYDVAKGMNY 152
Query: 808 LH 809
LH
Sbjct: 153 LH 154
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Query: 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229
L+KL L + YN L F +L+ L L + NQ L ++ + G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 230 KLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
+L +P +++ L+ L NQLQ S+P+ L NL+ L+L NQ +
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDL 335
L +T+ N F L+ QW+ + N + +G +L
Sbjct: 176 DRLGKLQTITLFGNQFD--CSRCETLYLSQWIRENSNKVKDGTGQNL 220
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
L L L +N+L L++L TL + N L+ F +L+ L+ L NQ
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGF 265
+L +++ + N+L IP ++ L++L NQLQ S+P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Query: 266 TLPNLERLNLGENQF 280
L L+ + L NQF
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 56/143 (39%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157
L+ L L+L N + L L L L NN H L+ L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQ 217
+L L+KL+ L ++ N L +F L++L+ LS S NQ +
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDR 177
Query: 218 LKRMRFIGFGVNKLSGEIPFSIY 240
L +++ I N+ ++Y
Sbjct: 178 LGKLQTITLFGNQFDCSRCETLY 200
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
+L+ L L L NN + +L +L L+L N L+ LRL
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
N+L L+ L+TL++ N L +F L L+ ++ NQF
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 310 SFGNLHKLQWVSISMNHLGN---GEKDDLEFVNSLVNA---------------SRLELLG 351
+F L KL W+++ N L G DDL + +L A ++L+ L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113
Query: 352 ININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIP 411
+ N LP V + T+L+ LR+ NQL NQ
Sbjct: 114 LGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 412 GSIGDLHKLQRLGLQGNKF 430
G+ L KLQ + L GN+F
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D + + + R++ H N+VK C + GN K L+ EF+ +GSL+E+L P+
Sbjct: 57 DLKKEIEILRNLYHENIVKYKGICT--EDGGNGIK-LIMEFLPSGSLKEYL---PKNKNK 110
Query: 789 SNLLQRLSIAVDVASALDYL 808
NL Q+L AV + +DYL
Sbjct: 111 INLKQQLKYAVQICKGMDYL 130
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D + + + R++ H N+VK C + GN K L+ EF+ +GSL+E+L P+
Sbjct: 69 DLKKEIEILRNLYHENIVKYKGICT--EDGGNGIK-LIMEFLPSGSLKEYL---PKNKNK 122
Query: 789 SNLLQRLSIAVDVASALDYL 808
NL Q+L AV + +DYL
Sbjct: 123 INLKQQLKYAVQICKGMDYL 142
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Query: 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229
L+KL L + YN L F +L+ L L + NQ L ++ + G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 230 KLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASI 288
+L +P +++ L+ L NQLQ S+P+ L NL+ L+L NQ +
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 289 SNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDL 335
L +T+ N F L+ QW+ + N + +G +L
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCEI--LYLSQWIRENSNKVKDGTGQNL 220
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 147 VNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
L L L +N+L L++L TL + N L+ F +L+ L+ L NQ
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 207 FVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGF 265
+L +++ + N+L IP ++ L++L NQLQ S+P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Query: 266 TLPNLERLNLGENQF 280
L L+ + L NQF
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157
L+ L L+L N + L L L L NN H L+ L LG N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
+L L+KL+ L ++ N L +F L++L+ LS S NQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 45/111 (40%)
Query: 97 NLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGF 156
+L+ L L L NN + +L +L L+L N L+ LRL
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
N+L L+ L+TL++ N L +F L L+ ++ NQF
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 310 SFGNLHKLQWVSISMNHLGN---GEKDDLEFVNSLVNA---------------SRLELLG 351
+F L KL W+++ N L G DDL + +L A ++L+ L
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113
Query: 352 ININNFGGMLPEAVGNLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIP 411
+ N LP V + T+L+ LR+ NQL NQ
Sbjct: 114 LGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 412 GSIGDLHKLQRLGLQGNKF 430
G+ L KLQ + L GN+F
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 115 IPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLR 174
+P+E+ L + L NN + S+ L +L L +N L PR L LR
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 175 TLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI-PKTLSQLKRMRFIGFGVNKLSG 233
L++H N++S +F +LS+L L+ AN + LS + + G+ + +G
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAG 165
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 163 VPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMR 222
VP++L + L + + N +S SF N++ L L S N+ P+T LK +R
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 223 FIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQL 255
+ N +S +P +N LS+L++ N L
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETL-VAVK----------------------RSIRHRN 744
L ++G G FGSV +G L +D +L VAVK + H N
Sbjct: 38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN 97
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEW-LHPKPEA-PRNSNLLQRLSIAVDVA 802
+++++ C + QG ++ FM G L + L+ + E P++ L L VD+A
Sbjct: 98 VIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIA 157
Query: 803 SALDYL 808
++YL
Sbjct: 158 LGMEYL 163
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 28/125 (22%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK------RS-------------IRHRN 744
D L LIG G +G+VYKG L+ E VAVK R + H N
Sbjct: 13 DNLKLLELIGRGRYGAVYKGSLD----ERPVAVKVFSFANRQNFINEKNIYRVPLMEHDN 68
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
+ + I V G LV E+ NGSL ++L + S+ + +A V
Sbjct: 69 IARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYL-----SLHTSDWVSSCRLAHSVTRG 123
Query: 805 LDYLH 809
L YLH
Sbjct: 124 LAYLH 128
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 17 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 76
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 77 GVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 129
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 17 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 76
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 77 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 129
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 21 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 81 GVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 133
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 26/119 (21%)
Query: 708 LENLIGAGSFGSVYKGILNHDDHETL-----------------VAVKRSIRHRNLVKIIT 750
L IG+GSFG+VYKG + D + VAV R RH N++ +
Sbjct: 40 LSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFM- 98
Query: 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ D A+V ++ SL + LH + + Q + IA A +DYLH
Sbjct: 99 -----GYMTKDNLAIVTQWCEGSSLYKHLHVQET---KFQMFQLIDIARQTAQGMDYLH 149
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 35/136 (25%)
Query: 693 RVSYQNLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------RSIRHR 743
RV + LF D IG GSFG VYKGI NH + +VA+K +
Sbjct: 14 RVDPEELFTKLDR------IGKGSFGEVYKGIDNHT--KEVVAIKIIDLEEAEDEIEDIQ 65
Query: 744 NLVKIITSCAS---VDFQGNDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLS 796
+ +++ C S + G+ K+ ++ E++ GS + L P P L+
Sbjct: 66 QEITVLSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDLLKPGP--------LEETY 117
Query: 797 IAV---DVASALDYLH 809
IA ++ LDYLH
Sbjct: 118 IATILREILKGLDYLH 133
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 29 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 88
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 89 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 141
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 21 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 81 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 133
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 21 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 81 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 133
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 10/173 (5%)
Query: 116 PQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNEL--VGKVPRKLGSLSKL 173
P +I L F NN + +N H LE+L L N+L + K+ + L
Sbjct: 320 PSKISPFLHLDF---SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 174 RTLAVHYNNLS-GQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLS 232
+ L + N++S + SL L+ S+N I + L R++ + NK+
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434
Query: 233 GEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIP 285
IP + L +L NQL+ S+P + L +L+++ L N + P
Sbjct: 435 S-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 8/120 (6%)
Query: 210 QIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPN 269
+PK LSQ + + N +S I +LS L N++Q S F
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-QE 70
Query: 270 LERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG--KVPSFGNLHKLQWVSISMNHL 327
LE L+L N+ + S +L L + N F FGN+ +L+++ +S HL
Sbjct: 71 LEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 18 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 77
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 78 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 130
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 76 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 128
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 21 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 81 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 133
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 20 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 79
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 80 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 132
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 18 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 77
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 78 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 130
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 220 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 279
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 280 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYL 331
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 18 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 77
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 78 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYL 129
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 76 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYLE 128
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 262 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 321
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C + F ++ EFM G+L ++L N+ +L L +A ++SA++YL
Sbjct: 322 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVNAVVL--LYMATQISSAMEYL 373
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 119 IGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178
I YL L L L +N P + + + L L N L K + L ++TL +
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 120
Query: 179 HYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFS 238
++ P LS+L+VL NQ P L+ L ++++ G N+++ P +
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLA 176
Query: 239 IYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLT 298
NLS L N++ P +LPNL ++L +NQ + P ++N S+L +T
Sbjct: 177 --NLSKLTTLRADDNKISDISPL---ASLPNLIEVHLKDNQISDVSP--LANLSNLFIVT 229
Query: 299 I 299
+
Sbjct: 230 L 230
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G FG VY+G+ L D E AV + I+H NLV+++
Sbjct: 14 TMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 73
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 74 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 126
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 126 QFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKL-GSLSKLRTLAVHYNNLS 184
Q L+L +N P +NL+ L LG N+L G +P + SL++L L + N L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 185 GQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LS 243
+ F L L+ L N+ ++P+ + +L + + N+L IP ++ LS
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159
Query: 244 SLNY 247
SL +
Sbjct: 160 SLTH 163
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 148 NLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF 207
N + L L N++ P SL L+ L + N L F +L+ L VL NQ
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100
Query: 208 VGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLP 260
+L ++ + NKL+ E+P I L+ L + NQL+ S+P
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK + H+N+V+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 112
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 113 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 167
Query: 805 LDYLH 809
YL
Sbjct: 168 CQYLE 172
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK + H+N+V+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKLNHQNIVR 98
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 99 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 153
Query: 805 LDYLH 809
YL
Sbjct: 154 CQYLE 158
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 169 SLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQ-IPKTLSQLKRMRFIGFG 227
SL L L + + + F LSSLEVL + N F +P ++L+ + F+
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 228 VNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIP 285
+L P + +LSSL NQL+ S+P + L +L+++ L N + P
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 543
+GL L +LD + L S F + L+NL LD+S LE
Sbjct: 393 LGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 544 LGMNGNFFQGN-IPSSFSSLRGIENLDLSRNNLSGRIP 580
L M GN FQ N +P F+ LR + LDLS+ L P
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 488 GLSSLSIYLDLSQNQLNGT-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNLSGRIPK 581
N + F L ++ + L N P+
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 139 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 193
Query: 805 LDYLH 809
YL
Sbjct: 194 CQYLE 198
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ NNL+
Sbjct: 142 PGLLTPTPKLEKLSLANNNLT 162
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 112
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 113 ----CIGVSLQSLP-RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 167
Query: 805 LDYLH 809
YL
Sbjct: 168 CQYLE 172
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 55 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 114
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 115 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 169
Query: 805 LDYLH 809
YL
Sbjct: 170 CQYLE 174
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 56 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 115
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 116 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 170
Query: 805 LDYLH 809
YL
Sbjct: 171 CQYLE 175
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 218 LKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGE 277
L +R++ G NKL ++ L++L Y NQLQ SLP+ + L NL+ L L E
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 278 NQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEF 337
NQ +P + F L L ++ + N L + K
Sbjct: 119 NQLQS-LPDGV----------------------FDKLTNLTYLYLYHNQLQSLPKG---V 152
Query: 338 VNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL 382
+ L N +RL+L NN LPE V + T+L+ L + +NQL
Sbjct: 153 FDKLTNLTRLDL----DNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 170 LSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVN 229
L +R LA+ N L S+ L++L L + NQ +L ++ + N
Sbjct: 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 230 KLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+L +P +++ L++L Y NQLQ SLP + L NL RL+L NQ
Sbjct: 120 QLQS-LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 30 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 89
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 90 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 144
Query: 805 LDYLH 809
YL
Sbjct: 145 CQYLE 149
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 98 ----CIGVSLQSLP-RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 152
Query: 805 LDYLH 809
YL
Sbjct: 153 CQYLE 157
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ NNL+
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT 161
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 45 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 104
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 105 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 159
Query: 805 LDYLH 809
YL
Sbjct: 160 CQYLE 164
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 76 GVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 128
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALIISKFNHQNIVR 112
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 113 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 167
Query: 805 LDYLH 809
YL
Sbjct: 168 CQYLE 172
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 98 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 152
Query: 805 LDYLH 809
YL
Sbjct: 153 CQYLE 157
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 14 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 73
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 74 GVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 126
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 119 IGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178
G L L L L N G P+ +++ L+LG N++ + L +L+TL +
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 179 HYNNLSGQIPSSFGNLSSLEVLSASANQF 207
+ N +S +P SF +L+SL L+ ++N F
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 225 GFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGF-TLPNLERLNLGENQFTGP 283
G G+ ++ +IP L LN E G + SD F LP+L +L L NQ TG
Sbjct: 17 GRGLKEIPRDIPLHTTELL-LNDNEL------GRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 284 IPASISNASHLMRLTI---PINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNS 340
P + ASH+ L + I S K+ F LH+L+ +++ N + E +NS
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKM--FLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 341 LV 342
L
Sbjct: 128 LT 129
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 494 IYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLG-SCVRLEQLGMNGNFFQ 552
+ L+L +NQL G P+ F ++ L + ENK+ EI N + +L+ L + N
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQIS 115
Query: 553 GNIPSSFSSLRGIENLDLSRN 573
+P SF L + +L+L+ N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 181 NNLSGQIPSS--FGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNK---LSGEI 235
+N G+I S FG L L L NQ G P ++ + G NK +S ++
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 236 PFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
++ L +LN ++ NQ+ +P L +L LNL N F
Sbjct: 98 FLGLHQLKTLNLYD---NQISCVMPGSFEH-LNSLTSLNLASNPF 138
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 76 GVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 128
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 98
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 99 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 153
Query: 805 LDYLH 809
YL
Sbjct: 154 CQYLE 158
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 65 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 124
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 125 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 179
Query: 805 LDYLH 809
YL
Sbjct: 180 CQYLE 184
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETLVAVKR-----SIRHRNL-------VKIITSCASVDF 757
N +G G FG VYKG +N+ T VAVK+ I L +K++ C +
Sbjct: 37 NKMGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 92
Query: 758 --------QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
G+D LVY +M NGSL + L P S + R IA A+ +++LH
Sbjct: 93 VELLGFSSDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHM-RCKIAQGAANGINFLH 150
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 32/125 (25%)
Query: 712 IGAGSFGSVYKGILN---HDDHETLVAVKR---------------------SIRHRNLVK 747
+G G+FG VY+G ++ +D VAVK H+N+V+
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 98
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSLEEWLH---PKPEAPRNSNLLQRLSIAVDVASA 804
C V Q + ++ E M G L+ +L P+P P + +L L +A D+A
Sbjct: 99 ----CIGVSLQSLP-RFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 153
Query: 805 LDYLH 809
YL
Sbjct: 154 CQYLE 158
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 33/72 (45%)
Query: 126 QFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSG 185
Q LWL+NN P H VNL+ L N+L L++L L ++ N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 186 QIPSSFGNLSSL 197
+F NL SL
Sbjct: 96 IPRGAFDNLKSL 107
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 498 LSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPS 557
L+ NQ+ P F L NL L + NKL+ +L QL +N N +
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 558 SFSSLRGIENLDLSRN 573
+F +L+ + ++ L N
Sbjct: 100 AFDNLKSLTHIYLYNN 115
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETLVAVKR-----SIRHRNL-------VKIITSCASVDF 757
N +G G FG VYKG +N+ T VAVK+ I L +K++ C +
Sbjct: 37 NKMGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 92
Query: 758 --------QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
G+D LVY +M NGSL + L P S + R IA A+ +++LH
Sbjct: 93 VELLGFSSDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHM-RCKIAQGAANGINFLH 150
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 14 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 73
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 74 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 126
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 21 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 81 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 133
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETLVAVKR-----SIRHRNL-------VKIITSCASVDF 757
N +G G FG VYKG +N+ T VAVK+ I L +K++ C +
Sbjct: 31 NKMGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 86
Query: 758 --------QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
G+D LVY +M NGSL + L P S + R IA A+ +++LH
Sbjct: 87 VELLGFSSDGDDL-CLVYVYMPNGSLLDRLSCLDGTPPLSWHM-RCKIAQGAANGINFLH 144
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
++PS G+ + + LD+S N+++ + L CV L+ L + N SFSSL +
Sbjct: 19 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 76
Query: 566 ENLDLSRNNLS 576
E+LDLS N LS
Sbjct: 77 EHLDLSYNYLS 87
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG-KVPSFGNLHK 316
S+PS L ++ L+L N+ T + + +L L + NG + + SF +L
Sbjct: 19 SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
L+ + +S N+L N + ++SL + L LLG N + + ++ + T+L+ILR
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSL---TFLNLLG---NPYKTLGETSLFSHLTKLQILR 129
Query: 377 VGNNQLFGNI 386
VGN F I
Sbjct: 130 VGNMDTFTKI 139
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Query: 113 NEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSK 172
N IP G ++ L L NN ++ CVNL++L L N + SL
Sbjct: 18 NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF--VGQIPKTLSQLKRMRFIGFGVNK 230
L L + YN LS S F LSSL L+ N + +G+ S L +++ + G
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET-SLFSHLTKLQILRVGNMD 134
Query: 231 LSGEIPFSIY-NLSSLNYFEFPVNQLQGSLPSDL 263
+I + L+ L E + LQ P L
Sbjct: 135 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 168
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 76 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 128
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 16 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 76 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYLE 128
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
++PS G+ + + LD+S N+++ + L CV L+ L + N SFSSL +
Sbjct: 45 SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 566 ENLDLSRNNLS 576
E+LDLS N LS
Sbjct: 103 EHLDLSYNYLS 113
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 258 SLPSDLGFTLPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG-KVPSFGNLHK 316
S+PS L ++ L+L N+ T + + +L L + NG + + SF +L
Sbjct: 45 SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 317 LQWVSISMNHLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILR 376
L+ + +S N+L N + ++SL + L LLG N + + ++ + T+L+ILR
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSL---TFLNLLG---NPYKTLGETSLFSHLTKLQILR 155
Query: 377 VGNNQLFGNI 386
VGN F I
Sbjct: 156 VGNMDTFTKI 165
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 6/154 (3%)
Query: 113 NEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSK 172
N IP G ++ L L NN ++ CVNL++L L N + SL
Sbjct: 44 NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF--VGQIPKTLSQLKRMRFIGFGVNK 230
L L + YN LS S F LSSL L+ N + +G+ S L +++ + G
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMD 160
Query: 231 LSGEIPFSIY-NLSSLNYFEFPVNQLQGSLPSDL 263
+I + L+ L E + LQ P L
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 707 SLENLIGAGSFGSVYKGI------------LNHDDHET-----LVAVKRSIRHRNLVKII 749
++++ +G G +G VY+G+ L D E AV + I+H NLV+++
Sbjct: 223 TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 282
Query: 750 TSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
C + F ++ EFM G+L ++L ++ +L L +A ++SA++YL
Sbjct: 283 GVCT----REPPF-YIITEFMTYGNLLDYLRECNRQEVSAVVL--LYMATQISSAMEYL 334
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 712 IGAGSFGSV----YKG-------ILNHDDHETLVA---VKRSIRHRNLVKIITSCASVDF 757
IG G FG V Y+G I N + +A V +RH NLV+++ V+
Sbjct: 14 IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG--VIVEE 71
Query: 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
+G + +V E+M GSL ++L + + + L + S+ DV A++YL
Sbjct: 72 KGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSL--DVCEAMEYL 118
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 36.6 bits (83), Expect = 0.063, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 712 IGAGSFGSV----YKG-------ILNHDDHETLVA---VKRSIRHRNLVKIITSCASVDF 757
IG G FG V Y+G I N + +A V +RH NLV+++ V+
Sbjct: 20 IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG--VIVEE 77
Query: 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYL 808
+G + +V E+M GSL ++L + + + L + S+ DV A++YL
Sbjct: 78 KGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSL--DVCEAMEYL 124
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ N+L+
Sbjct: 141 PGLLTPTPKLEKLSLANNDLT 161
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
G L L L S NQ + +P L + + N+L+ ++ L L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNA-----SHLMR----LTIPIN 302
N+L+ +LP L P LE+L+L N T +PA + N + L++ TIP
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNDLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 303 GFSGKVPSFGNLHKLQWVS 321
F + F LH W+
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
G L L L S NQ + +P L + + N+L+ ++ L L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNA-----SHLMR----LTIPIN 302
N+L+ +LP L P LE+L+L NQ T +PA + N + L++ TIP
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 303 GFSGKVPSFGNLHKLQWVS 321
F + F LH W+
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 218 LKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGE 277
L +R++ G NKL ++ L++L Y NQLQ SLP+ + L NL+ L L E
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118
Query: 278 NQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEF 337
NQ +P + F L L +++++ N L + K
Sbjct: 119 NQLQS-LPDGV----------------------FDKLTNLTYLNLAHNQLQSLPKG---V 152
Query: 338 VNSLVNASRLELLGININNFGGMLPEAVGNLSTRLRILRVGNNQL 382
+ L N + L+L + N LPE V + T+L+ LR+ NQL
Sbjct: 153 FDKLTNLTELDL---SYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
I + N+ L LG N+L L L+ L L + N L F L++L+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 203 SANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPS 261
NQ +L + ++ N+L +P +++ L++L + NQLQ SLP
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPE 174
Query: 262 DLGFTLPNLERLNLGENQF 280
+ L L+ L L +NQ
Sbjct: 175 GVFDKLTQLKDLRLYQNQL 193
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 498 LSQNQLNGT----LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQG 553
L++ LNG LP+ L NL VLD+S N+L+ +P LGSC +L+ N
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMV-T 306
Query: 554 NIPSSFSSLRGIENLDLSRNNLSGRIPK 581
+P F +L ++ L + N L + K
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 26/93 (27%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
I NLS LRVLDL +N +P E+G F+L++ +
Sbjct: 266 IKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF------------------------ 300
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQI 187
F+ +V +P + G+L L+ L V N L Q
Sbjct: 301 -FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 141 DNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVL 200
D + H ++L +L++ FN + + L L ++ N+L+ ++P+ NLS+L VL
Sbjct: 223 DQLWHALDLSNLQI-FN-----ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVL 275
Query: 201 SASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQ 256
S N+ +P L ++++ F N ++ +P+ NL +L + N L+
Sbjct: 276 DLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLE 329
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
G L L L S NQ + +P L + + N+L+ ++ L L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNA-----SHLMR----LTIPIN 302
N+L+ +LP L P LE+L+L NQ T +PA + N + L++ TIP
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 303 GFSGKVPSFGNLHKLQWVS 321
F + F LH W+
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ EF+ GSL E+L E +
Sbjct: 60 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEFLPYGSLREYLQKHKERIDH 116
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 117 IKLLQYTS---QICKGMEYL 133
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 712 IGAGSFGSV----YKG-------ILNHDDHETLVA---VKRSIRHRNLVKIITSCASVDF 757
IG G FG V Y+G I N + +A V +RH NLV+++ V+
Sbjct: 29 IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG--VIVEE 86
Query: 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+G + +V E+M GSL ++L + + + L + S+ DV A++YL
Sbjct: 87 KGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSL--DVCEAMEYLE 134
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 50/216 (23%)
Query: 93 PHIGNLSFLRVLDLKNNSFRN--EIP-------------QEIGYLFRLQFL---WLDNNT 134
P + N SFL+++D+ NNS + ++P +E+ L L FL + DNN+
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206
Query: 135 FGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNL 194
++PD ++LES+ G N ++ ++P +L +L L T+ NNL +P
Sbjct: 207 L-KKLPD---LPLSLESIVAG-NNILEELP-ELQNLPFLTTIYAD-NNLLKTLPDLPP-- 257
Query: 195 SSLEVLSASANQF--VGQIPKTLSQLKRMRFIGFGVNKLSG--EIPFSIYNLSSLNYFEF 250
SLE L+ N + ++P++L+ F+ N SG E+P ++Y Y
Sbjct: 258 -SLEALNVRDNYLTDLPELPQSLT------FLDVSENIFSGLSELPPNLY------YLNA 304
Query: 251 PVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPA 286
N+++ L P+LE LN+ N+ +PA
Sbjct: 305 SSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPA 334
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
G L L L S NQ + +P L + + N+L+ ++ L L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNA-----SHLMR----LTIPIN 302
N+L+ +LP L P LE+L+L NQ T +PA + N + L++ TIP
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 303 GFSGKVPSFGNLHKLQWVS 321
F + F LH W+
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LDLS NQL +LP L L VLDVS N+L+ +L L++L + GN +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 556 PSSFSSLRGIENLDLSRNNLS 576
P + +E L L+ N L+
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT 161
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 12/139 (8%)
Query: 192 GNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFP 251
G L L L S NQ + +P L + + N+L+ ++ L L
Sbjct: 74 GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 252 VNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPASISNA-----SHLMR----LTIPIN 302
N+L+ +LP L P LE+L+L NQ T +PA + N + L++ TIP
Sbjct: 133 GNELK-TLPPGLLTPTPKLEKLSLANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 303 GFSGKVPSFGNLHKLQWVS 321
F + F LH W+
Sbjct: 191 FFGSHLLPFAFLHGNPWLC 209
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 33/124 (26%)
Query: 709 ENLIGAGSFGSVYKGILNHD--DHETLVAVKRSIRHRNLVKIITSCASVDFQG------- 759
+ +IGAG FG VYKG+L E VA+K L T VDF G
Sbjct: 49 QKVIGAGEFGEVYKGMLKTSSGKKEVPVAIK------TLKAGYTEKQRVDFLGEAGIMGQ 102
Query: 760 -------------NDFKAL--VYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
+ +K + + E+M NG+L+++L E ++LQ + + +A+
Sbjct: 103 FSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLR---EKDGEFSVLQLVGMLRGIAAG 159
Query: 805 LDYL 808
+ YL
Sbjct: 160 MKYL 163
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 712 IGAGSFGSV----YKG-------ILNHDDHETLVA---VKRSIRHRNLVKIITSCASVDF 757
IG G FG V Y+G I N + +A V +RH NLV+++ V+
Sbjct: 201 IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG--VIVEE 258
Query: 758 QGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+G + +V E+M GSL ++L + + + L + S+ DV A++YL
Sbjct: 259 KGGLY--IVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSL--DVCEAMEYLE 306
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK---------RSIRHRNLVKIITSCAS---VDFQG 759
IG GSFG V+KGI N + +VA+K + + +++ C S + G
Sbjct: 35 IGKGSFGEVFKGIDNRT--QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYG 92
Query: 760 NDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ K ++ E++ GS + L P P + Q +I ++ LDYLH
Sbjct: 93 SYLKDTKLWIIMEYLGGGSALDLLEPGP-----LDETQIATILREILKGLDYLH 141
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 543
+GL L +LD + L S F + L+NL LD+S LE
Sbjct: 417 LGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 473
Query: 544 LGMNGNFFQGN-IPSSFSSLRGIENLDLSRNNLSGRIP 580
L M GN FQ N +P F+ LR + LDLS+ L P
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 488 GLSSLSIYLDLSQNQLNGT-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 467 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
+ N F + L ++ LD S N++
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 25/116 (21%)
Query: 191 FGNLSSLEVLSASANQFVGQ-IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL---- 245
F LSSLEVL + N F +P ++L+ + F+ +L P + +LSSL
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 246 ----NYF----------------EFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT 281
N+F ++ +N + S +L +L LNL +N F
Sbjct: 525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 487 IGLSSLSIYLDLSQNQLNGTLPSNFGI---LKNLGVLDVSENKLSGEIPNSLGSCVRLEQ 543
+GL L +LD + L S F + L+NL LD+S LE
Sbjct: 393 LGLEQLE-HLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 544 LGMNGNFFQGN-IPSSFSSLRGIENLDLSRNNLSGRIP 580
L M GN FQ N +P F+ LR + LDLS+ L P
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 488 GLSSLSIYLDLSQNQLNGT-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 443 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
+ N F + L ++ LD S N++
Sbjct: 502 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 125 LQFLWLDNNTFGGQ-IPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNL 183
L+ L + N+F +PD + NL L L +L P SLS L+ L + +NN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 184 SGQIPSSFGNLSSLEVLSASANQFV 208
+ L+SL+VL S N +
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIM 531
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 25/116 (21%)
Query: 191 FGNLSSLEVLSASANQFVGQ-IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL---- 245
F LSSLEVL + N F +P ++L+ + F+ +L P + +LSSL
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 246 ----NYF----------------EFPVNQLQGSLPSDLGFTLPNLERLNLGENQFT 281
N+F ++ +N + S +L +L LNL +N F
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK---------RSIRHRNLVKIITSCAS---VDFQG 759
IG GSFG V+KGI N + +VA+K + + +++ C S + G
Sbjct: 15 IGKGSFGEVFKGIDNRT--QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYG 72
Query: 760 NDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ K ++ E++ GS + L P P + Q +I ++ LDYLH
Sbjct: 73 SYLKDTKLWIIMEYLGGGSALDLLEPGP-----LDETQIATILREILKGLDYLH 121
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 23/114 (20%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK---------RSIRHRNLVKIITSCAS---VDFQG 759
IG GSFG V+KGI N + +VA+K + + +++ C S + G
Sbjct: 15 IGKGSFGEVFKGIDNRT--QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYG 72
Query: 760 NDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ K ++ E++ GS + L P P + Q +I ++ LDYLH
Sbjct: 73 SYLKDTKLWIIMEYLGGGSALDLLEPGP-----LDETQIATILREILKGLDYLH 121
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------RSIRHRNLVKIITSCAS-- 754
F+ IG GSFG V+KGI N + +VA+K + + +++ C S
Sbjct: 24 FTKLEKIGKGSFGEVFKGIDNRT--QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 81
Query: 755 -VDFQGNDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ G+ K ++ E++ GS + L P P + Q +I ++ LDYLH
Sbjct: 82 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP-----LDETQIATILREILKGLDYLH 136
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 19/183 (10%)
Query: 119 IGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAV 178
+ YL L L L +N P + + + L L N L K + L ++TL +
Sbjct: 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114
Query: 179 HYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFS 238
++ P LS+L+VL NQ P L+ L ++++ G ++S P +
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLA 170
Query: 239 IYNLSSLNYFEFPVNQLQGSLPSDLG--FTLPNLERLNLGENQFTGPIPASISNASHLMR 296
NLS L + N++ SD+ +LPNL ++L NQ + P ++N S+L
Sbjct: 171 --NLSKLTTLKADDNKI-----SDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221
Query: 297 LTI 299
+T+
Sbjct: 222 VTL 224
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
IS+ NL L L FN + P + SL+KL+ L YNN + SS NL+++ LSA
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSA 356
Query: 203 SANQFVGQIPKTLSQLKRMRFIGF 226
NQ P L+ L R+ +G
Sbjct: 357 GHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
IS+ NL L L FN + P + SL+KL+ L YNN + SS NL+++ LSA
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSA 356
Query: 203 SANQFVGQIPKTLSQLKRMRFIGF 226
NQ P L+ L R+ +G
Sbjct: 357 GHNQISDLTP--LANLTRITQLGL 378
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
IS+ NL L L FN + P + SL+KL+ L YNN + SS NL+++ LSA
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSA 355
Query: 203 SANQFVGQIPKTLSQLKRMRFIGF 226
NQ P L+ L R+ +G
Sbjct: 356 GHNQISDLTP--LANLTRITQLGL 377
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + IRH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 509 SNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGN-IPSSFSSLRGIEN 567
S F L+NL LD+S LE L M GN FQ N +P F+ LR +
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 568 LDLSRNNLSGRIP 580
LDLS+ L P
Sbjct: 180 LDLSQCQLEQLSP 192
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 488 GLSSLSIYLDLSQNQLNGT-LPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGM 546
GLSSL + L ++ N LP F L+NL LD+S+ +L P + S L+ L M
Sbjct: 148 GLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 547 NGNFFQGNIPSSFSSLRGIENLDLSRNNL 575
+ N F + L ++ LD S N++
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 25/115 (21%)
Query: 191 FGNLSSLEVLSASANQFVGQ-IPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL---- 245
F LSSLEVL + N F +P ++L+ + F+ +L P + +LSSL
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 246 ----NYF----------------EFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
N+F ++ +N + S +L +L LNL +N F
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
IS+ NL L L FN + P + SL+KL+ L YNN + SS NL+++ LSA
Sbjct: 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSA 360
Query: 203 SANQFVGQIPKTLSQLKRMRFIGF 226
NQ P L+ L R+ +G
Sbjct: 361 GHNQISDLTP--LANLTRITQLGL 382
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 22/119 (18%)
Query: 706 FSLENLIGAGSFGSVYKGILNHDDHETLVAVKRSIRHRNLVKIITS------CAS---VD 756
F + +G GS+GSVYK I H + +VA+K+ +L +II C S V
Sbjct: 31 FDVLEKLGEGSYGSVYKAI--HKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVK 88
Query: 757 FQGNDFK----ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQR--LSIAVDVASALDYLH 809
+ G+ FK +V E+ GS+ + + RN L + +I L+YLH
Sbjct: 89 YYGSYFKNTDLWIVMEYCGAGSVSDIIR-----LRNKTLTEDEIATILQSTLKGLEYLH 142
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 72/184 (39%), Gaps = 4/184 (2%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG-F 156
L L L+L +N Q YL +L+ LWL NN + +L L LG
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLS 216
L L LR L + NL IP + L LE L S N+ P +
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 217 QLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLG 276
L +R + +++ + +L SL N L SLP DL L LER++L
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLN 258
Query: 277 ENQF 280
N +
Sbjct: 259 HNPW 262
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 24 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 83
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 84 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 143
Query: 807 YL 808
YL
Sbjct: 144 YL 145
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ--- 552
LDL N++ +F LKNL L + NK+S P + V+LE+L ++ N +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 553 GNIPSSFSSLRGIEN 567
+P + LR EN
Sbjct: 117 EKMPKTLQELRVHEN 131
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 12/229 (5%)
Query: 103 VLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGK 162
+LDL+NN + L L L L NN P + V LE L L N+L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 163 VPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF--VGQIPKTLSQLKR 220
+P K+ L+ L VH N ++ S F L+ + V+ N G +K+
Sbjct: 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+ +I ++ IP + SL N++ + L L NL +L L N
Sbjct: 173 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSI 228
Query: 281 TGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN 329
+ S++N HL L + N KVP G L +++ + H N
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVP--GGLADHKYIQVVYLHNNN 274
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 22 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 81
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 82 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 141
Query: 807 YL 808
YL
Sbjct: 142 YL 143
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 34/123 (27%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETL---VAVK---------------------RSIRHRNL 745
++G+G+FG+VYKGI + ET+ VA+K S+ H +L
Sbjct: 44 KVLGSGAFGTVYKGIWVPEG-ETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 102
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
V+++ C S Q LV + M +G L E++H E N L+ V +A +
Sbjct: 103 VRLLGVCLSPTIQ------LVTQLMPHGCLLEYVH---EHKDNIGSQLLLNWCVQIAKGM 153
Query: 806 DYL 808
YL
Sbjct: 154 MYL 156
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQ--- 552
LDL N++ +F LKNL L + NK+S P + V+LE+L ++ N +
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 553 GNIPSSFSSLRGIEN 567
+P + LR EN
Sbjct: 117 EKMPKTLQELRVHEN 131
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 12/229 (5%)
Query: 103 VLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGK 162
+LDL+NN + L L L L NN P + V LE L L N+L +
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 163 VPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF--VGQIPKTLSQLKR 220
+P K+ L+ L VH N ++ S F L+ + V+ N G +K+
Sbjct: 115 LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+ +I ++ IP + SL N++ + L L NL +L L N
Sbjct: 173 LSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSI 228
Query: 281 TGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGN 329
+ S++N HL L + N KVP G L +++ + H N
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLV-KVP--GGLADHKYIQVVYLHNNN 274
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 75 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 131
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 132 IKLLQYTS---QICKGMEYL 148
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 75 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 131
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 132 IKLLQYTS---QICKGMEYL 148
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 26 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 85
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 86 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 145
Query: 807 YL 808
YL
Sbjct: 146 YL 147
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 85 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 144
Query: 807 YL 808
YL
Sbjct: 145 YL 146
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 57 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 113
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 114 IKLLQYTS---QICKGMEYL 130
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 8 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 64
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 65 LVQLYAVVSEEPI------XIVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 116
Query: 805 LDYLH 809
+ Y+
Sbjct: 117 MAYVE 121
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 85 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 144
Query: 807 YL 808
YL
Sbjct: 145 YL 146
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 85 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 144
Query: 807 YL 808
YL
Sbjct: 145 YL 146
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 85 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 144
Query: 807 YL 808
YL
Sbjct: 145 YL 146
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 58 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 114
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 115 IKLLQYTS---QICKGMEYL 131
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 25/122 (20%)
Query: 712 IGAGSFGSVYKG---ILNHDDHETLVAVKR-----SIRHR-------NLVKIITSCASVD 756
+G GSFG VY+G + + ET VAVK S+R R +++K T V
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVR 84
Query: 757 FQGNDFKA----LVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRLSIAVDVASALD 806
G K +V E M +G L+ +L +PEA N L + + +A ++A +
Sbjct: 85 LLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA 144
Query: 807 YL 808
YL
Sbjct: 145 YL 146
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 33/134 (24%)
Query: 700 FKATDGFSLENL-------IGAGSFGSVYKGI------------LNHDDHETL-----VA 735
F++ D + +E +G G +G VY G+ L D E A
Sbjct: 21 FQSMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAA 80
Query: 736 VKRSIRHRNLVKIITSCA-SVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQR 794
V + I+H NLV+++ C F +V E+M G+L ++L + +L
Sbjct: 81 VMKEIKHPNLVQLLGVCTLEPPFY------IVTEYMPYGNLLDYLRECNREEVTAVVL-- 132
Query: 795 LSIAVDVASALDYL 808
L +A ++SA++YL
Sbjct: 133 LYMATQISSAMEYL 146
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 267 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 323
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 324 LVQLYAVVSEEPIY------IVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 375
Query: 805 LDYLH 809
+ Y+
Sbjct: 376 MAYVE 380
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 88 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 144
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 145 IKLLQYTS---QICKGMEYL 161
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 57 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 113
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 114 IKLLQYTS---QICKGMEYL 130
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 83/213 (38%), Gaps = 32/213 (15%)
Query: 169 SLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQI-PKTLSQLKRMRFIGFG 227
S L L +H N L+G ++F L+ LE L S N + + P T L + +
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD 112
Query: 228 VNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGPIPAS 287
L P L++L Y N LQ +LP + L NL L L N+ IP
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNR----IP-- 165
Query: 288 ISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHLGNGEKDDLEFVNSLVNASRL 347
++P + F G LH L + + NH+ ++ + RL
Sbjct: 166 ----------SVPEHAFRG-------LHSLDRLLLHQNHVARVHP------HAFRDLGRL 202
Query: 348 ELLGININNFGGMLPEAVGNLSTRLRILRVGNN 380
L + NN MLP V L+ LR+ +N
Sbjct: 203 MTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDN 234
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 55 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 111
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 112 IKLLQYTS---QICKGMEYL 128
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 64 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 120
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 121 IKLLQYTS---QICKGMEYL 137
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 72/184 (39%), Gaps = 4/184 (2%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLG-F 156
L L L+L +N Q YL +L+ LWL NN + +L L LG
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 157 NELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLS 216
L L LR L + NL IP + L LE L S N+ P +
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLK-DIP-NLTALVRLEELELSGNRLDLIRPGSFQ 199
Query: 217 QLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLG 276
L +R + +++ + +L SL N L SLP DL L LER++L
Sbjct: 200 GLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLN 258
Query: 277 ENQF 280
N +
Sbjct: 259 HNPW 262
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 62 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 118
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 119 IKLLQYTS---QICKGMEYL 135
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 60 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 116
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 117 IKLLQYTS---QICKGMEYL 133
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 63 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 119
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 120 IKLLQYTS---QICKGMEYL 136
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 57 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 113
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 114 IKLLQYTS---QICKGMEYL 130
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 60 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQAHAERIDH 116
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 117 IKLLQYTS---QICKGMEYL 133
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 11 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 67
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 68 LVQLYAVVSEEPIY------IVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 119
Query: 805 LDYLH 809
+ Y+
Sbjct: 120 MAYVE 124
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 56 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 112
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 113 IKLLQYTS---QICKGMEYL 129
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 240
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 241 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 292
Query: 805 LDYLH 809
+ Y+
Sbjct: 293 MAYVE 297
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 240
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 241 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 292
Query: 805 LDYLH 809
+ Y+
Sbjct: 293 MAYVE 297
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVIEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVIEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 729 DHETLVAVKRSIRHRNLVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRN 788
D E + + +S++H N+VK C S G L+ E++ GSL ++L E +
Sbjct: 61 DFEREIEILKSLQHDNIVKYKGVCYSA---GRRNLKLIMEYLPYGSLRDYLQKHKERIDH 117
Query: 789 SNLLQRLSIAVDVASALDYL 808
LLQ S + ++YL
Sbjct: 118 IKLLQYTS---QICKGMEYL 134
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 185 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEK 241
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 242 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 293
Query: 805 LDYLH 809
+ Y+
Sbjct: 294 MAYVE 298
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 8 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 67
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 68 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 126
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 127 QMAGEIADGMAYLN 140
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVCEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 85/227 (37%), Gaps = 10/227 (4%)
Query: 103 VLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFNELVGK 162
+LDL+NN + L L L L NN S L+ L + N LV
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 163 VPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQF--VGQIPKTLSQLKR 220
P SL +LR +H N + F L ++ + N G P LK
Sbjct: 118 PPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK- 173
Query: 221 MRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQF 280
+ ++ KL+G IP + +LN N++Q DL L RL LG NQ
Sbjct: 174 LNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQI 229
Query: 281 TGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNHL 327
S+S L L + N S +L LQ V + N++
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 34/124 (27%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETLVAVKR------------------------SIRHRNL 745
N G G FG VYKG +N+ T VAVK+ +H NL
Sbjct: 28 NKXGEGGFGVVYKGYVNN----TTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENL 83
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
V+++ + G+D LVY + NGSL + L P S R IA A+ +
Sbjct: 84 VELLGFSSD----GDDL-CLVYVYXPNGSLLDRLSCLDGTPPLS-WHXRCKIAQGAANGI 137
Query: 806 DYLH 809
++LH
Sbjct: 138 NFLH 141
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 34/124 (27%)
Query: 710 NLIGAGSFGSVYKGILNHDDHETL---VAVK---------------------RSIRHRNL 745
++G+G+FG+VYKGI + ET+ VA+K S+ H +L
Sbjct: 21 KVLGSGAFGTVYKGIWVPEG-ETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHL 79
Query: 746 VKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASAL 805
V+++ C S Q LV + M +G L E++H E N L+ V +A +
Sbjct: 80 VRLLGVCLSPTIQ------LVTQLMPHGCLLEYVH---EHKDNIGSQLLLNWCVQIAKGM 130
Query: 806 DYLH 809
YL
Sbjct: 131 MYLE 134
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 7 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 63
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 64 LVQLYAVVSEEPIY------IVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 115
Query: 805 LDYLH 809
+ Y+
Sbjct: 116 MAYVE 120
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 9 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 65
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 66 LVQLYAVVSEEPI------YIVTEYMSKGSLLDFL--KGEMGKYLRLPQLVDMAAQIASG 117
Query: 805 LDYLH 809
+ Y+
Sbjct: 118 MAYVE 122
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 91
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH + + + + IA A +DYLH
Sbjct: 92 PQLAIVTQWCEGSSLYHHLHA---SETKFEMKKLIDIARQTARGMDYLH 137
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
+ +L+ L LDL NN N P + L +L L L N P ++ L +L L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 290
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP--------------------SSFGNL 194
N+L P + +L L L +++NN+S P SS NL
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANL 348
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGF 226
+++ LSA NQ P L+ L R+ +G
Sbjct: 349 TNINWLSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 76
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 77 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 135
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 136 QMAGEIADGMAYLN 149
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 69
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 70 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 128
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 129 QMAGEIADGMAYLN 142
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 10 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 69
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 70 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 128
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 129 QMAGEIADGMAYLN 142
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
IS+ NL L L FN + P + SL+KL+ L N +S SS NL+++ LSA
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSA 355
Query: 203 SANQFVGQIPKTLSQLKRMRFIGF 226
NQ P L+ L R+ +G
Sbjct: 356 GHNQISDLTP--LANLTRITQLGL 377
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 28/152 (18%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRL 154
+ +L+ L LDL NN N P + L +L L L N P ++ L +L L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 293
Query: 155 GFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIP--------------------SSFGNL 194
N+L P + +L L L +++NN+S P SS NL
Sbjct: 294 NENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANL 351
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGF 226
+++ LSA NQ P L+ L R+ +G
Sbjct: 352 TNINWLSAGHNQISDLTP--LANLTRITQLGL 381
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 14 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 73
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 74 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 132
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 133 QMAGEIADGMAYLN 146
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 21 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 80
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 81 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 126
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 75
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 76 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 134
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 135 QMAGEIADGMAYLN 148
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 75
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 76 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 121
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 75
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 76 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 121
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 20 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 79
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH + + + + IA A +DYLH
Sbjct: 80 PQLAIVTQWCEGSSLYHHLHA---SETKFEMKKLIDIARQTARGMDYLH 125
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 17 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 76
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 77 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 135
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 136 QMAGEIADGMAYLN 149
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 184 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 240
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + +A +AS
Sbjct: 241 LVQLYAVVSEEPI------YIVGEYMSKGSLLDFL--KGETGKYLRLPQLVDMAAQIASG 292
Query: 805 LDYLH 809
+ Y+
Sbjct: 293 MAYVE 297
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 103
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 104 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 149
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 184
Query: 327 LGNGEKDDLEFVNSLVNASRLEL 349
+ DL + L N LEL
Sbjct: 185 IS-----DLRALAGLKNLDVLEL 202
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 16 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 75
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 76 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 134
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 135 QMAGEIADGMAYLN 148
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 488 GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
G+ + + LDL +N++ F +L L+++EN +S P + + L LG+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 548 GNFFQGNIPSSFSSLRGIENLDLSRNNL 575
N + F+ L + LD+S N +
Sbjct: 89 SNRLKLIPLGVFTGLSNLTKLDISENKI 116
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 94 HIGNLSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLR 153
H+ L LR+ L N+ R+ L+RL+ L + + + + N + +NL SL
Sbjct: 174 HLHGLIVLRLRHLNINAIRD---YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 154 LGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPK 213
+ L + L LR L + YN +S S L L+ + Q P
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290
Query: 214 TLSQLKRMRFIGFGVNKLS 232
L +R + N+L+
Sbjct: 291 AFRGLNYLRVLNVSGNQLT 309
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 103
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 104 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 149
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 21 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 80
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 81 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 126
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 26/115 (22%)
Query: 712 IGAGSFGSVYKGILNHDDHETL-----------------VAVKRSIRHRNLVKIITSCAS 754
IG+GSFG+VYKG + D + V V R RH N++ + +
Sbjct: 16 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA 75
Query: 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 76 PQL------AIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 121
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 45 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 104
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 105 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 163
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 164 QMAGEIADGMAYLN 177
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 18 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 77
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 78 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 123
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 43 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 102
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 103 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 148
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 26/115 (22%)
Query: 712 IGAGSFGSVYKGILNHD-----------------DHETLVAVKRSIRHRNLVKIITSCAS 754
IG+GSFG+VYKG + D + V V R RH N++ + +
Sbjct: 32 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA 91
Query: 755 VDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH + + + + IA A +DYLH
Sbjct: 92 PQL------AIVTQWCEGSSLYHHLHA---SETKFEMKKLIDIARQTARGMDYLH 137
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVKRSIRH-----RNLVKIITSCASVD---FQGNDFK 763
IG+GSFG+VYKG + D ++ V +N V ++ V+ F G K
Sbjct: 36 IGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK 95
Query: 764 ---ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
A+V ++ SL LH +++ + IA A +DYLH
Sbjct: 96 PQLAIVTQWCEGSSLYHHLHI---IETKFEMIKLIDIARQTAQGMDYLH 141
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR----NLVKI- 748
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R N +
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 82
Query: 749 -------ITSCASVDFQGNDFKALVYEFMVNGSLEEWLHP-KPEAPRN-----SNLLQRL 795
+ V QG ++ E M G L+ +L +PE N +L + +
Sbjct: 83 KEFNCHHVVRLLGVVSQGQP-TLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 141
Query: 796 SIAVDVASALDYLH 809
+A ++A + YL+
Sbjct: 142 QMAGEIADGMAYLN 155
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 143 ISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSA 202
SH +LE L L NE+ L+ L L + N L F NL LEVL
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354
Query: 203 SANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLP 260
S N ++ L ++ + N+L +P I++ L+SL N S P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 497 DLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIP 556
DLS++++ L S F +L L +++N+++ N+ L +L ++ NF G+I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSID 339
Query: 557 SS-FSSLRGIENLDLSRNNLSG 577
S F +L +E LDLS N++
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA 361
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 269 NLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMNH 326
+LE+L L +N+ + +HL++L + N F G + S F NL KL+ + +S NH
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 327 L 327
+
Sbjct: 359 I 359
>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g
pdb|2HW7|A Chain A, Crystal Structure Of Mnk2-D228g In Complex With
Staurosporine
Length = 316
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
LV+E M GS+ +H + R+ N L+ + DVASALD+LH
Sbjct: 88 LVFEKMRGGSILSHIHKR----RHFNELEASVVVQDVASALDFLH 128
>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain
Length = 316
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 765 LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
LV+E M GS+ +H + R+ N L+ + DVASALD+LH
Sbjct: 88 LVFEKMRGGSILSHIHKR----RHFNELEASVVVQDVASALDFLH 128
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 207
Query: 327 LGNGEKDDLEFVNSLVNASRLEL 349
+ DL + L N LEL
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 207
Query: 327 LGNGEKDDLEFVNSLVNASRLEL 349
+ DL + L N LEL
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 207
Query: 327 LGNGEKDDLEFVNSLVNASRLEL 349
+ DL + L N LEL
Sbjct: 208 IS-----DLRALAGLKNLDVLEL 225
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 17/62 (27%)
Query: 710 NLIGAGSFGSVYKGI-----------LNHDDHETLVAVKRSI------RHRNLVKIITSC 752
LIG G FG VY G + D+ + L A KR + RH N+V + +C
Sbjct: 39 ELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGAC 98
Query: 753 AS 754
S
Sbjct: 99 MS 100
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 153 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 209
Query: 327 LGNGEKDDLEFVNSLVNASRLELLG 351
+ DL + L N LEL
Sbjct: 210 IS-----DLRALAGLKNLDVLELFS 229
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M G L ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVMEYMSKGCLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 187
Query: 327 LGNGEKDDLEFVNSLVNASRLELL 350
+ DL + L N LEL
Sbjct: 188 IS-----DLRALAGLKNLDVLELF 206
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 189
Query: 327 LGNGEKDDLEFVNSLVNASRLELL 350
+ DL + L N LEL
Sbjct: 190 IS-----DLRALAGLKNLDVLELF 208
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 5/195 (2%)
Query: 134 TFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGN 193
T Q ++ C N S + + + +VP + + ++L L +H N + +SF +
Sbjct: 29 TGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRL--LNLHENQIQIIKVNSFKH 86
Query: 194 LSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVN 253
L LE+L S N + L + + N+L+ + LS L N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146
Query: 254 QLQGSLPSDLGFTLPNLERLNLGENQFTGPI-PASISNASHLMRLTIPINGFSGKVPSFG 312
++ S+PS +P+L RL+LGE + I + S+L L + + ++P+
Sbjct: 147 PIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLT 204
Query: 313 NLHKLQWVSISMNHL 327
L KL + +S NHL
Sbjct: 205 PLIKLDELDLSGNHL 219
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 488 GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
GLS+L YL+L+ L +P N L L LD+S N LS P S + L++L M
Sbjct: 183 GLSNLR-YLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 548 GNFFQGNIPSSFSSLRGIENLDLSRNNLS 576
+ Q ++F +L+ + ++L+ NNL+
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 4/184 (2%)
Query: 98 LSFLRVLDLKNNSFRNEIPQEIGYLFRLQFLWLDNNTFGGQIPDNISHCVNLESLRLGFN 157
L+ L L+L +N YL +L+ LWL NN + +L L LG
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 158 ELVGKVPR-KLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLS 216
+ + + LS LR L + NL +IP + L L+ L S N P +
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ 228
Query: 217 QLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLG 276
L ++ + +++ + NL SL N L LP DL L +LER++L
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287
Query: 277 ENQF 280
N +
Sbjct: 288 HNPW 291
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 698 NLFKATDGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK---------RSIRHRNLVKI 748
N+ + F+ IG GSFG V+KGI N + +VA+K + + +
Sbjct: 17 NIADPEELFTKLERIGKGSFGEVFKGIDNRT--QQVVAIKIIDLEEAEDEIEDIQQEITV 74
Query: 749 ITSCAS---VDFQGNDFKA----LVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDV 801
++ C S + G+ K ++ E++ GS + L P + Q ++ ++
Sbjct: 75 LSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDLLRAGP-----FDEFQIATMLKEI 129
Query: 802 ASALDYLH 809
LDYLH
Sbjct: 130 LKGLDYLH 137
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 20/119 (16%)
Query: 706 FSLENLIGAGSFGSVYKGIL----------NHDDHETLVAVKRSIRHR-NLVKIITSCAS 754
+LE +IG G FG VY+ HD E + ++R L ++
Sbjct: 9 LTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNI 68
Query: 755 VDFQGNDFK----ALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
+ +G K LV EF G L L K P ++L ++ AV +A ++YLH
Sbjct: 69 IALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPP---DIL--VNWAVQIARGMNYLH 122
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 186
Query: 327 LGNGEKDDLEFVNSLVNASRLELL 350
+ DL + L N LEL
Sbjct: 187 IS-----DLRALAGLKNLDVLELF 205
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 18 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 74
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M G L ++L K E + L Q + +A +AS
Sbjct: 75 LVQLYAVVSEEPI------YIVTEYMSKGCLLDFL--KGEMGKYLRLPQLVDMAAQIASG 126
Query: 805 LDYLH 809
+ Y+
Sbjct: 127 MAYVE 131
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP G L KLQ + +S NH
Sbjct: 133 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAG-LTKLQNLYLSKNH 189
Query: 327 LGNGEKDDLEFVNSLVNASRLELL 350
+ DL + L N LEL
Sbjct: 190 IS-----DLRALAGLKNLDVLELF 208
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 706 FSLENLIGAGSFG----SVYKG--------------ILNHDDHETLVAVKRSIRHRNLVK 747
++LEN IG GS+G +V KG + + D + + + +S+ H N+++
Sbjct: 28 YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIR 87
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSL-EEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
+ + F+ N LV E G L E +H + R S+ + I DV SA+
Sbjct: 88 LYET-----FEDNTDIYLVMELCTGGELFERVVHKR--VFRESDAAR---IMKDVLSAVA 137
Query: 807 YLH 809
Y H
Sbjct: 138 YCH 140
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 71
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + ++ +AS
Sbjct: 72 LVQLYAVVSEEPI------YIVTEYMNKGSLLDFL--KGETGKYLRLPQLVDMSAQIASG 123
Query: 805 LDYLH 809
+ Y+
Sbjct: 124 MAYVE 128
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 30/125 (24%)
Query: 704 DGFSLENLIGAGSFGSVYKGILNHDDHETLVAVK-------------------RSIRHRN 744
+ LE +G G FG V+ G N T VA+K + +RH
Sbjct: 15 ESLRLEVKLGQGCFGEVWMGTWNGT---TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK 71
Query: 745 LVKIITSCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASA 804
LV++ + +V E+M GSL ++L K E + L Q + ++ +AS
Sbjct: 72 LVQLYAVVSEEPI------YIVTEYMNKGSLLDFL--KGETGKYLRLPQLVDMSAQIASG 123
Query: 805 LDYLH 809
+ Y+
Sbjct: 124 MAYVE 128
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 31/119 (26%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIIT 750
IG G+FG V+ G L D+ TLVAVK + H N+V++I
Sbjct: 122 IGRGNFGEVFSGRLRADN--TLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
Query: 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C +V E + G +L + R LLQ + D A+ ++YL
Sbjct: 180 VCTQ-----KQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVG---DAAAGMEYLE 230
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 706 FSLENLIGAGSFG----SVYKG--------------ILNHDDHETLVAVKRSIRHRNLVK 747
++LEN IG GS+G +V KG + + D + + + +S+ H N+++
Sbjct: 11 YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIR 70
Query: 748 IITSCASVDFQGNDFKALVYEFMVNGSL-EEWLHPKPEAPRNSNLLQRLSIAVDVASALD 806
+ + F+ N LV E G L E +H + R S+ + I DV SA+
Sbjct: 71 LYET-----FEDNTDIYLVMELCTGGELFERVVHKR--VFRESDAAR---IMKDVLSAVA 120
Query: 807 YLH 809
Y H
Sbjct: 121 YCH 123
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 31/119 (26%)
Query: 712 IGAGSFGSVYKGILNHDDHETLVAVK---------------------RSIRHRNLVKIIT 750
IG G+FG V+ G L D+ TLVAVK + H N+V++I
Sbjct: 122 IGRGNFGEVFSGRLRADN--TLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIG 179
Query: 751 SCASVDFQGNDFKALVYEFMVNGSLEEWLHPKPEAPRNSNLLQRLSIAVDVASALDYLH 809
C +V E + G +L + R LLQ + D A+ ++YL
Sbjct: 180 VCTQ-----KQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVG---DAAAGMEYLE 230
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR 743
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R
Sbjct: 23 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRER 72
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 186 QIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSL 245
Q P LS L+ + A ++P T Q + + N L +P SI +L+ L
Sbjct: 95 QFPDQAFRLSHLQHXTIDAAGLX-ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRL 152
Query: 246 NYFEFPVNQLQGSLPSDLGFT--------LPNLERLNLGENQFTG--PIPASISNASHLM 295
LP L T L NL+ L L ++TG +PASI+N +L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL---EWTGIRSLPASIANLQNLK 209
Query: 296 RLTIPINGFSGKVPSFGNLHKLQ 318
L I + S P+ +L KL+
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLE 232
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 702 ATDGFSLENLIGAGSFGSVYKGILN---HDDHETLVAVKR-----SIRHR 743
A + ++ +G GSFG VY+G+ D+ ET VA+K S+R R
Sbjct: 13 AREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRER 62
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 488 GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
GL LS L L+ N + P +F L +L L E KL+ +G + L++L +
Sbjct: 78 GLHHLS-NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 548 GNFFQG-NIPSSFSSLRGIENLDLSRN 573
NF +P+ FS+L + ++DLS N
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 488 GLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMN 547
GL LS L L+ N + P +F L +L L E KL+ +G + L++L +
Sbjct: 73 GLHHLS-NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 548 GNFFQG-NIPSSFSSLRGIENLDLSRN 573
NF +P+ FS+L + ++DLS N
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N S VP L KLQ + +S NH
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-LACLTKLQNLYLSKNH 184
Query: 327 LGNGEKDDLEFVNSLVNASRLELLG 351
+ DL + L N LEL
Sbjct: 185 IS-----DLRALCGLKNLDVLELFS 204
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 26/103 (25%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLG----------------SCV 539
+DLS NQ++ P F L++L L + NK++ E+P SL +C+
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL 119
Query: 540 RLEQ---------LGMNGNFFQGNIPSSFSSLRGIENLDLSRN 573
R++ L + N Q +FS LR I+ + L++N
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 217 QLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNL 275
+L + + G NKL +P ++N L+SL Y NQLQ SLP+ + L L+ L L
Sbjct: 50 ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107
Query: 276 GENQFTGPIPASISNASHLMRLTIPINGFSGKVPS--FGNLHKLQWVSISMN 325
NQ + L L + N VP F L LQ++ + N
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 195 SSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYN-LSSLNYFEFPVN 253
++ +VL NQ P L ++ ++ VN+L+ +P +++ L+ L + +N
Sbjct: 40 TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLTKLTHLALHIN 98
Query: 254 QLQGSLPSDLGFTLPNLERLNLGENQF 280
QL+ S+P + L +L + L N +
Sbjct: 99 QLK-SIPMGVFDNLKSLTHIYLFNNPW 124
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 168 GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFG 227
G + + L ++ N ++ P F +L+ L L+ + NQ +L ++ +
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 228 VNKLSGEIPFSIY-NLSSLNYF 248
+N+L IP ++ NL SL +
Sbjct: 97 INQLK-SIPMGVFDNLKSLTHI 117
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
++PS G+ + LD+S NK++ L +C L+ L + + +F SL +
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 566 ENLDLSRNNLSG 577
E+LDLS N+LS
Sbjct: 103 EHLDLSDNHLSS 114
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 95 IGNLSFLRVLDLKNNSFRNEIP---QEIGYLFRLQFLWLDNNTFGGQIPDNISHC----- 146
+GN S LR LDL +N + P Q IG LF L L+N + + + C
Sbjct: 168 LGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFAL---LLNNAQLNPHLTEKL--CWELSN 221
Query: 147 VNLESLRLGFNELVGKVPRKLGSL--SKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASA 204
++++L L N+L+ L + L L + YNNL SF L SL LS
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 205 NQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEF--PVNQLQGSLPS- 261
N + +LS P S Y LS+L Y + SL S
Sbjct: 282 N---------------------NIQRLS---PRSFYGLSNLRYLSLKRAFTKQSVSLASH 317
Query: 262 ----DLGFT-LPNLERLNLGENQFTGPIPASISNA 291
D F L LE LN+ +N IP++ SN
Sbjct: 318 PNIDDFSFQWLKYLEYLNMDDNN----IPSTKSNT 348
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 267 LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH 326
LP LE L LG N+ T +S + L L++ N VP L KLQ + +S NH
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIRRIVP-LARLTKLQNLYLSKNH 187
Query: 327 LGNGEKDDLEFVNSLVNASRLELLG 351
+ DL + L N LEL
Sbjct: 188 IS-----DLRALRGLKNLDVLELFS 207
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 506 TLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNIPSSFSSLRGI 565
++PS G+ + LD+S NK++ L +C L+ L + + +F SL +
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 566 ENLDLSRNNLSG 577
E+LDLS N+LS
Sbjct: 77 EHLDLSDNHLSS 88
>pdb|3I2C|L Chain L, Crystal Structure Of Anti-Il-23 Antibody Cnto4088
Length = 218
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 177 AVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQL 218
A +Y SG++P +FG+ + LE+ A A V P + QL
Sbjct: 88 ATYYCQHSGELPFTFGSGTKLEIKRADAAPTVSIFPPSSEQL 129
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 148 NLESLRLGFNELVGKVPRKL-GSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQ 206
NLES+ G N+L ++PR + G + KL+ L + N L F L+SL+ + N
Sbjct: 171 NLESIEFGSNKL-RQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229
Query: 207 FVGQIPK 213
+ P+
Sbjct: 230 WDCSCPR 236
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 145/408 (35%), Gaps = 109/408 (26%)
Query: 131 DNNTFGGQIPDNISHCVNLESLRLGFNELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSS 190
D NTF G ++ H L L + R +L L+ L + YN ++ +
Sbjct: 256 DQNTFAGLARSSVRH------LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 191 FGNLSSLEVLSASANQFVGQIPKTLSQLKRMRFIGFGVNKLSGEIPFS-IYNLSSLNYFE 249
F L +L+VL+ S N L GE+ S Y L + Y +
Sbjct: 310 FYGLDNLQVLNLSYN-------------------------LLGELYSSNFYGLPKVAYID 344
Query: 250 FPVNQLQGSLPSDLGFT-LPNLERLNLGENQFTGPIPASISNASHLMRLTIPINGFSGKV 308
N + ++ D F L L+ L+L +N T H + +IP SG
Sbjct: 345 LQKNHI--AIIQDQTFKFLEKLQTLDLRDNALT---------TIHFIP-SIPDIFLSG-- 390
Query: 309 PSFGNLHKLQWVSISMN--HLGNGEKDDLEFVNSLVNASRLELLGININNFGGMLPEAVG 366
L L ++++ N HL ++L+ + L+ L++L +N N F +
Sbjct: 391 ---NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 367 NLSTRLRILRVGNNQLFGNIPSXXXXXXXXXXXXXXXNQFTGRIPGSIGDLHKLQRLGLQ 426
+ + L L +G N L + F G L LQ L L
Sbjct: 448 SENPSLEQLFLGENML-----------QLAWETELCWDVFEG--------LSHLQVLYLN 488
Query: 427 GNKFLGEIPSSIGNLTLLITLSFDKNML----EGSIPSSLGKCQXXXXXXXXXXXXXXXX 482
N P +LT L LS + N L +P++L
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL-------------------- 528
Query: 483 PTEVIGLSSLSIYLDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGE 530
E+ LD+S+NQL L N + +L VLD++ NK E
Sbjct: 529 --EI---------LDISRNQL---LAPNPDVFVSLSVLDITHNKFICE 562
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LD+ N ++ P L L VL++ N+LS + C L +L + N Q
Sbjct: 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113
Query: 556 PSSFSSLRGIENLDLSRNNLSG 577
+ F + + LDLS N LS
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSS 135
>pdb|3M84|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3M84|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis
pdb|3QTY|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
pdb|3QTY|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Synthetase From Francisella Tularensis Complexed With
Pyrophosphate
Length = 350
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 706 FSLENLIGAGSFGSVY--KGILNHDDHETLVAVKRSIRHRNLVKIITSCASVDFQGND-F 762
F+ + L G GSFGS+Y K I+N+ D LV + + K+ C + G D F
Sbjct: 34 FTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTK--TKVAVXCGKFENLGYDLF 91
Query: 763 KALVYEFMVNGS-----LEEWLHPKPEAPRNSNLLQRLSIA 798
A + +V G+ L+ H K + L++ S A
Sbjct: 92 SAATNDIVVXGAKPITFLDYVAHDKLDPAIXEELVKGXSKA 132
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 27/179 (15%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASAN-QFVGQIPKTLSQLKRMRFIGFGVNKL 231
L L +H N L+ ++F L+ LE L S N Q P T L R+ + L
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 232 SGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL--------------------- 270
P L++L Y N LQ +LP D L NL
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 175
Query: 271 ---ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG-KVPSFGNLHKLQWVSISMN 325
+RL L +N+ P + + LM L + N S + L LQ++ ++ N
Sbjct: 176 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LD+ N ++ P L L VL++ N+LS + C L +L + N Q
Sbjct: 59 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 118
Query: 556 PSSFSSLRGIENLDLSRNNLSG 577
+ F + + LDLS N LS
Sbjct: 119 NNPFVKQKNLITLDLSHNGLSS 140
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%)
Query: 496 LDLSQNQLNGTLPSNFGILKNLGVLDVSENKLSGEIPNSLGSCVRLEQLGMNGNFFQGNI 555
LD+ N ++ P L L VL++ N+LS + C L +L + N Q
Sbjct: 64 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 123
Query: 556 PSSFSSLRGIENLDLSRNNLSG 577
+ F + + LDLS N LS
Sbjct: 124 NNPFVKQKNLITLDLSHNGLSS 145
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 27/179 (15%)
Query: 173 LRTLAVHYNNLSGQIPSSFGNLSSLEVLSASAN-QFVGQIPKTLSQLKRMRFIGFGVNKL 231
L L +H N L+ ++F L+ LE L S N Q P T L R+ + L
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 232 SGEIPFSIYNLSSLNYFEFPVNQLQGSLPSDLGFTLPNL--------------------- 270
P L++L Y N LQ +LP D L NL
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176
Query: 271 ---ERLNLGENQFTGPIPASISNASHLMRLTIPINGFSG-KVPSFGNLHKLQWVSISMN 325
+RL L +N+ P + + LM L + N S + L LQ++ ++ N
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008
pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
Parvula Dsm 2008 In Complex With Nadp
Length = 221
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 158 ELVGKVPRKLGSLSKLRTLAVHYNNLSGQIPSSFGNLSSLEVLSASANQFVGQIPKTLSQ 217
+L ++P ++ ++ + + N G++ + N + V + + + I K LS+
Sbjct: 39 QLKTRIPPEIIDHERVTVIEGSFQN-PGKLEQAVTNAEVVFVGAMESGSDMASIVKALSR 97
Query: 218 LKRMRFIGFGVNKLSGEIPFSIYNLSSLNYFEFPVNQLQG 257
R IG + LSGE P + L + P++ +QG
Sbjct: 98 KNIRRVIGVSMAGLSGEFPVA---LEKWTFDNLPISYVQG 134
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 241 NLSSLNYFEFPVNQLQGSLPSDLGFTLPNLERLNLGENQFTGP--------IPASISNAS 292
+L + E N L ++ D LP +RLN+G P A++ S
Sbjct: 362 SLRDTEFIELYENFLSTTVKDDGSELLPVSDRLNIGIVHVGAPSAALNAATRAATLYCLS 421
Query: 293 HLMRLTIPINGFSGKVPSFGNLHKLQWVSISMNH-LGNGE 331
H + +NGFSG + + G + +L W+ + H LG E
Sbjct: 422 HGHKPYAIMNGFSGLIQT-GEVKELSWIDVENWHNLGGSE 460
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,617,222
Number of Sequences: 62578
Number of extensions: 862544
Number of successful extensions: 3175
Number of sequences better than 100.0: 252
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 2367
Number of HSP's gapped (non-prelim): 642
length of query: 809
length of database: 14,973,337
effective HSP length: 107
effective length of query: 702
effective length of database: 8,277,491
effective search space: 5810798682
effective search space used: 5810798682
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)