BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040854
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4
PE=1 SV=2
Length = 106
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 85/107 (79%), Gaps = 2/107 (1%)
Query: 1 MAKSF-AIFILALFAISMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQT 59
MAKS+ AIF+L L + MLQTMV+A++G + + K YGPG++K QCP +CD RC +T
Sbjct: 1 MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVK-WSQKRYGPGSLKRTQCPSECDRRCKKT 59
Query: 60 QYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
QY K C+ FCNKCC+KCLCVPPGYYGNK VC CYNNWKT+EGGPKCP
Sbjct: 60 QYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106
>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6
PE=3 SV=1
Length = 101
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Query: 5 FAIFILALFAISMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKP 64
A I + +++L T V + Y + YGPG++KSYQC G+C RCS T+Y KP
Sbjct: 1 MAKLITSFLLLTILFTFVCLTMSKEAE-YHPESYGPGSLKSYQCGGQCTRRCSNTKYHKP 59
Query: 65 CLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
C+FFC KCC KCLCVPPG YGNK VCPCYNNWKT++GGPKCP
Sbjct: 60 CMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101
>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1
Length = 112
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 49/66 (74%)
Query: 41 GTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKE 100
G + C KC RCS+T Y+KPC+FFC KCC KCLCVP G YGNK CPCYNNWKTK
Sbjct: 47 GRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKR 106
Query: 101 GGPKCP 106
GGPKCP
Sbjct: 107 GGPKCP 112
>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1
Length = 96
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 57/95 (60%), Gaps = 9/95 (9%)
Query: 12 LFAISMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPCLFFCNK 71
L ISM ++ +N G + ++ C +C RCS T ++KPC+FFC K
Sbjct: 11 LLLISMFLILLTFSNVVEGYN---------KLRPTDCKPRCTYRCSATSHKKPCMFFCQK 61
Query: 72 CCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
CC CLCVP G YGNK CPCYNNWKT+EG PKCP
Sbjct: 62 CCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96
>sp|Q6GKX7|GASAC_ARATH Gibberellin-regulated protein 12 OS=Arabidopsis thaliana GN=GASA12
PE=3 SV=1
Length = 106
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 8/106 (7%)
Query: 9 ILALFAISMLQTMVVAANGQGGRHYDS--------KHYGPGTVKSYQCPGKCDTRCSQTQ 60
++ L + ++ +++ A G +S K+ G G++K +CP C+ RCS T
Sbjct: 1 MMKLIVVFVISSLLFATQFSNGDELESQAQAPAIHKNGGEGSLKPEECPKACEYRCSATS 60
Query: 61 YRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
+RKPCLFFCNKCC KCLCVP G YG+K CPCYNNW TKEGGPKCP
Sbjct: 61 HRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106
>sp|A8MR46|GASAD_ARATH Gibberellin-regulated protein 13 OS=Arabidopsis thaliana GN=GASA13
PE=3 SV=1
Length = 103
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 1 MAKSFAIFILALFAISMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQ 60
MA +I + ++ + +L + + ++K P + +C +C RCS TQ
Sbjct: 1 MATKLSIIVFSIVVLHLLLSAHMHFLINVCAECETKSAIPPLL---ECGPRCGDRCSNTQ 57
Query: 61 YRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
Y+KPCLFFCNKCC KCLCVPPG YGNK VCPCYNNWKTK GGPKCP
Sbjct: 58 YKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103
>sp|Q84J95|GASA5_ARATH Gibberellin-regulated protein 5 OS=Arabidopsis thaliana GN=GASA5
PE=2 SV=1
Length = 97
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 53/68 (77%)
Query: 39 GPGTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKT 98
G G +K QC KC RCS T ++KPC+FFC KCCKKCLCVPPG +GNK CPCYNNWKT
Sbjct: 30 GGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKT 89
Query: 99 KEGGPKCP 106
KEG PKCP
Sbjct: 90 KEGRPKCP 97
>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana
GN=At2g39540 PE=2 SV=1
Length = 87
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 7 IFILALFAISMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPCL 66
+ ++ F IS+L T + + C GKC+ RCS+ + CL
Sbjct: 3 LVVVQFFIISLLLT---------------SSFSVLSSADSSCGGKCNVRCSKAGQHEECL 47
Query: 67 FFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
+CN CC+KC CVP G +G+K CPCY + K +GG KCP
Sbjct: 48 KYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87
>sp|P86888|PMLN_PRUPE Peamaclein OS=Prunus persica PE=1 SV=1
Length = 63
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%)
Query: 48 CPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
C KC RCS+ Y++ CL +C CC+KC CVP G YGNK CPCY + K +G PKCP
Sbjct: 5 CDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP 63
>sp|Q8LFM2|GASAA_ARATH Gibberellin-regulated protein 10 OS=Arabidopsis thaliana GN=GASA10
PE=2 SV=1
Length = 89
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 35 SKHYGPGTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKC-LCVPPGYYGNKAVCPCY 93
S + T S C GKC+ RCS+ + CL +CN CC+KC CVP G YGNK CPCY
Sbjct: 17 SSLFILSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCY 76
Query: 94 NNWKTKEGGPKCP 106
+ K +G KCP
Sbjct: 77 RDMKNSKGTSKCP 89
>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3
PE=2 SV=1
Length = 99
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCY 93
+ G G VK C G+C RCS++ CL CN CC +C CVPPG GN +CPCY
Sbjct: 28 EDSQVGEGVVK-IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCY 86
Query: 94 NNWKTKEGGPKCP 106
+ T+ G KCP
Sbjct: 87 ASITTRGGRLKCP 99
>sp|Q948Z4|SNAK1_SOLTU Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1
Length = 88
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 48 CPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
C KC RCS+ CL +C CC++C CVP G YGNK CPCY + K +G KCP
Sbjct: 30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88
>sp|O82328|GASA7_ARATH Gibberellin-regulated protein 7 OS=Arabidopsis thaliana GN=GASA7
PE=3 SV=1
Length = 108
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 35/59 (59%)
Query: 48 CPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
C KC+ RC + + CL +C CCK C CVP G YGNK C CY + + +G PKCP
Sbjct: 50 CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108
>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9
PE=2 SV=1
Length = 119
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 33/60 (55%)
Query: 47 QCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
C C RCS+T +K C C CC KC CVPPG GN A CPCY + +T KCP
Sbjct: 60 NCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119
>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14
PE=1 SV=1
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 52 CDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVC-PCYNNWKTKEGGPKCP 106
C TRC Q + C+ C CC +C CVPPG YGNK C CY N KT+ G KCP
Sbjct: 220 CGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSKCP 275
>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
Length = 104
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 1 MAKSFAIFILALFA------ISMLQTMVVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDT 54
MA S A+F L + + +QT V +N Y + K C G C
Sbjct: 1 MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAY--------SYKKIDCGGACAA 52
Query: 55 RCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
RC + + C C CC +C CVPPG GN CPCY + T KCP
Sbjct: 53 RCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104
>sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2
PE=2 SV=1
Length = 99
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 34 DSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCY 93
D G G VK C G+C RCS++ K CL CN CC +C CVPPG GN +CPCY
Sbjct: 28 DGAKVGEGVVK-IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCY 86
Query: 94 NNWKTKEGGPKCP 106
+ T G KCP
Sbjct: 87 ASITTHGGRLKCP 99
>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1
PE=2 SV=2
Length = 98
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%)
Query: 41 GTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKE 100
G K C C RC ++ + C C CC +C CVPPG YGN C CY + T
Sbjct: 33 GYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHG 92
Query: 101 GGPKCP 106
G KCP
Sbjct: 93 GRRKCP 98
>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11
PE=3 SV=1
Length = 94
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 29/60 (48%)
Query: 47 QCPGKCDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106
C +C RCS + C C CC +C CV PG GN CPCY + T G KCP
Sbjct: 35 DCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94
>sp|Q5IXF8|GLP2R_MOUSE Glucagon-like peptide 2 receptor OS=Mus musculus GN=Glp2r PE=2 SV=2
Length = 512
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 CSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAV-CPCYNNWKTKE 100
C + KP FCN K +C P + GN +V CP Y W KE
Sbjct: 43 CLKDLLEKPSGVFCNGTFDKYVCWPHSFPGNVSVPCPSYLPWWNKE 88
>sp|A3QP08|TS1R2_SAISC Taste receptor type 1 member 2 OS=Saimiri sciureus GN=TAS1R2 PE=3
SV=1
Length = 834
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 52 CDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKA-------VCPCYNNW 96
C RC Q +KP + CC +C+ PPG + N+ CP N W
Sbjct: 490 CSKRCQSGQKKKPVGI--HTCCFECIDCPPGTFLNQTANEYDCQACPS-NEW 538
>sp|Q925I4|TS1R2_MOUSE Taste receptor type 1 member 2 OS=Mus musculus GN=Tas1r2 PE=2 SV=1
Length = 843
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 52 CDTRCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAV 89
C C Q +KP + CC +C+ PPG Y N++V
Sbjct: 499 CSKSCQPGQMKKPIGL--HPCCFECVDCPPGTYLNRSV 534
>sp|Q9Z0W0|GLP2R_RAT Glucagon-like peptide 2 receptor OS=Rattus norvegicus GN=Glp2r PE=2
SV=1
Length = 550
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 55 RCSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAV-CPCYNNWKTKE 100
+C + + + FCN + +C P Y GN +V CP Y W E
Sbjct: 82 KCLEDLHNRLSGIFCNGTFDRYVCWPHSYPGNVSVPCPSYLPWWNAE 128
>sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor OS=Homo sapiens GN=GLP2R PE=1 SV=1
Length = 553
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 56 CSQTQYRKPCLFFCNKCCKKCLCVPPGYYGNKAV-CPCYNNWKTKE 100
C + ++P FCN + +C P GN +V CP Y W ++E
Sbjct: 83 CLRDLLKEPSGIFCNGTFDQYVCWPHSSPGNVSVPCPSYLPWWSEE 128
>sp|Q1E5A9|LMBD1_COCIM Probable lysosomal cobalamin transporter OS=Coccidioides immitis
(strain RS) GN=CIMG_02254 PE=3 SV=1
Length = 584
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 38 YGPGTVKSY-QCPGKCDTRCSQ-TQYRKPCLFFCNKCCKKCLCVP 80
YGP T Y P CS+ +Y KPC N K +C P
Sbjct: 447 YGPQTFCDYPSIPASAPLDCSKHKEYLKPCSELANNPAAKAVCTP 491
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 40 PGTVKSYQCPGKCDTRCSQTQYRKPCLFFCNKCCKKCL 77
P T + C C RC +Q +K C C+ C + C+
Sbjct: 1470 PCTGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCV 1507
>sp|A3LYL7|MYO1_PICST Myosin-1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 /
NBRC 10063 / NRRL Y-11545) GN=MYO1 PE=3 SV=2
Length = 1256
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 27 GQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKP 64
G+ G+ SK+Y G KS+ P T SQ Y+ P
Sbjct: 984 GKSGKVDYSKYYNRGVKKSFPVPSARPTAASQPSYKSP 1021
>sp|Q9DER5|TEN2_CHICK Teneurin-2 OS=Gallus gallus GN=TENM2 PE=1 SV=1
Length = 2802
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 69 CNKCCKKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKC 105
C K LC G Y +K C CY+ WK GP+C
Sbjct: 630 CAKAACPVLCSGNGQY-SKGTCLCYSGWK----GPEC 661
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 48 CPGKCDTRCSQTQYRKPCLFFCNKCCKKCL 77
C C RC +Q +K C C+ C + C+
Sbjct: 1486 CQRTCQNRCVHSQCKKKCGELCSPCVEPCV 1515
>sp|Q9DCN7|RNFT1_MOUSE RING finger and transmembrane domain-containing protein 1 OS=Mus
musculus GN=Rnft1 PE=2 SV=1
Length = 395
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 12/49 (24%)
Query: 58 QTQYRKPCLFFCNKC-CKKCLCVPPGYYGNKAVCP--------CYNNWK 97
Q +++KP L FC C++C+ + ++ + CP C N WK
Sbjct: 339 QAEFQKPVLLFCQHIFCEECITL---WFNREKTCPLCRTVISECINKWK 384
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.140 0.499
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,836,260
Number of Sequences: 539616
Number of extensions: 1700772
Number of successful extensions: 4499
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 4365
Number of HSP's gapped (non-prelim): 166
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)